BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14698
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila
melanogaster GN=CG3527 PE=3 SV=2
Length = 252
Score = 280 bits (716), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 132/197 (67%), Positives = 154/197 (78%), Gaps = 8/197 (4%)
Query: 18 QTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKN 77
+ N FELLNCDDH +++K+ R+PGSCRPDI HQCLLML DSPLNRAGLLQV++ TE N
Sbjct: 56 KVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNRAGLLQVFVRTEHN 115
Query: 78 VLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIG 137
VLIE+NPQTRIPRTFKRFAGLMVQLLHKF +RA+DS+ +L+ VIKNPIT H+PVG +K
Sbjct: 116 VLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKNPITDHVPVGCKKYA 175
Query: 138 TSFSSSKLTKPADLVP--------ADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAA 189
SFS L DLVP DEP+VIVIGA AHG + TDYTE SISN+PLSAA
Sbjct: 176 MSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYPLSAA 235
Query: 190 LTCTKLCSAFEEAWGVT 206
+ C+K+CSAFEE WGV
Sbjct: 236 IACSKICSAFEEVWGVV 252
>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus
GN=Emg1 PE=1 SV=1
Length = 244
Score = 274 bits (701), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 128/185 (69%), Positives = 149/185 (80%)
Query: 21 NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
+ELLNCD H +L K+GR+PG RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLI
Sbjct: 59 KTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLI 118
Query: 81 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
EVNPQTRIPRTF RF GLMVQLLHK SVRA+D KLLKVIKNP++ H PVG KIGTSF
Sbjct: 119 EVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSF 178
Query: 141 SSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFE 200
S ++ +LVP+ +P+V V+GA AHG+V +YTE +SISN+PLSAALTC K+ +AFE
Sbjct: 179 SVEDISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFE 238
Query: 201 EAWGV 205
E WGV
Sbjct: 239 EVWGV 243
>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens
GN=EMG1 PE=1 SV=4
Length = 244
Score = 274 bits (700), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/183 (70%), Positives = 149/183 (81%)
Query: 23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
+ELLNCD H +L K+GR+PG RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct: 61 YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
NPQTRIPRTF RF GLMVQLLHK SVRA+D KLLKVIKNP++ H PVG K+GTSFS
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSI 180
Query: 143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
++ +LVP+ +PIV V+GA AHG+V +YTE +SISN+PLSAALTC KL +AFEE
Sbjct: 181 PVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240
Query: 203 WGV 205
WGV
Sbjct: 241 WGV 243
>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1
OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1
Length = 231
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 139/202 (68%), Gaps = 2/202 (0%)
Query: 6 YKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRA 65
Y V + + + + +L+ D H L+K ++P RPDI+HQCLL L+DSPLNRA
Sbjct: 29 YVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRA 88
Query: 66 GLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPI 125
G L+V+ T KNVL++V+PQ RIPRTF RF GLMVQLLHK S+RA+++ KL+ V+KNP+
Sbjct: 89 GKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPV 148
Query: 126 TQHLPVGVRKIGTSFSSSKLTKPADLVP--ADEPIVIVIGAMAHGQVDTDYTEGNISISN 183
+ HLPVG RK+ SF+ +LT LV DEP+V++IG +A G++ DY + ISN
Sbjct: 149 SNHLPVGSRKMLMSFNVPELTMANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 208
Query: 184 FPLSAALTCTKLCSAFEEAWGV 205
+PLSAALTC K+ S EE WG+
Sbjct: 209 YPLSAALTCAKVTSGLEEIWGI 230
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1
Length = 229
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 135/184 (73%), Gaps = 4/184 (2%)
Query: 25 LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
LLNCDDH +L+K GR+ RPDI HQCLL L+DSP+N+AGLLQVYI T+KNVLIEVNP
Sbjct: 46 LLNCDDHQGILRKMGRDIAEARPDITHQCLLTLLDSPINKAGLLQVYILTKKNVLIEVNP 105
Query: 85 QTRIPRTFKRFAGLMVQLLHKFSVRASD-SNIKLLKVIKNPITQHLPVGVRKIGTSFSSS 143
RIPRTFKRF+GLMVQLLHK S+R+ + SN LL+V+KNP+T++LP RK+ SF +
Sbjct: 106 SVRIPRTFKRFSGLMVQLLHKLSIRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSF-DA 164
Query: 144 KLTKPADLVPADEPIVIVIGAMA--HGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEE 201
++ +P + + + + + +GAMA H +Y + I+ISN+PLSA++ C+K C E+
Sbjct: 165 EVMRPQEYLGDKQSVCVFVGAMARGHDSFADEYVDDKIAISNYPLSASVACSKFCHGAED 224
Query: 202 AWGV 205
AW +
Sbjct: 225 AWAI 228
>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1
SV=1
Length = 252
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 133/189 (70%), Gaps = 4/189 (2%)
Query: 21 NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
+ + LLNCDDH LLKK GR+ RPDI HQCLL L+DSP+N+AG LQVYI T + +LI
Sbjct: 63 DKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILI 122
Query: 81 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
EVNP RIPRTFKRF+GLMVQLLHK S+R+ +S KLLKVIKNPIT HLP RK+ SF
Sbjct: 123 EVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF 182
Query: 141 SSS--KLTKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLC 196
+ ++ + + DE I + +GAMA G+ + +Y + + +SN+PLSA++ C+K C
Sbjct: 183 DAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFC 242
Query: 197 SAFEEAWGV 205
E+AW +
Sbjct: 243 HGAEDAWNI 251
>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
albicans GN=NEP1 PE=3 SV=1
Length = 267
Score = 209 bits (532), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 133/190 (70%), Gaps = 6/190 (3%)
Query: 21 NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
+ F LLNCDDH LL+K GR+ RPDI HQCLL L+DSP+N+AG LQVYI T + VLI
Sbjct: 78 DRFALLNCDDHQGLLRKMGRDIAEARPDITHQCLLTLLDSPINKAGRLQVYIQTARGVLI 137
Query: 81 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
EVNP RIPRTFKRF+GLMVQLLHK S+R+ +S LLKVIKNPIT HLP RK+ SF
Sbjct: 138 EVNPSVRIPRTFKRFSGLMVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSF 197
Query: 141 SSSKLTKPADLVPA---DEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKL 195
++L + D V +E I + +GAMA G+ + ++ + I +S++PLSA++ C+K
Sbjct: 198 -DAELKRVQDYVTTLDENESICVFVGAMARGKDNFADEFVDEKIGLSDYPLSASVACSKF 256
Query: 196 CSAFEEAWGV 205
C E+ WG+
Sbjct: 257 CHGCEDVWGI 266
>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mra1 PE=1 SV=2
Length = 359
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 4/187 (2%)
Query: 23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
++LLNCDDH +LKK R RPDI HQCLL L+DSPLN+AG LQVYIHT K VLIEV
Sbjct: 172 YQLLNCDDHQGILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEV 231
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
NP RIPRTFKRF+GLMVQLLHK S+R+ + N KLLKVIKNP+T +LP RK SF +
Sbjct: 232 NPSVRIPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDA 291
Query: 143 SKL--TKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLCSA 198
+ K + + ++ + I IGAMAHG D + + ISIS++PLSA++ C+K +
Sbjct: 292 PTVPPRKYLETLQPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYPLSASIACSKFLHS 351
Query: 199 FEEAWGV 205
E+ G+
Sbjct: 352 MEDFLGI 358
>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=nep1 PE=3 SV=1
Length = 220
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 25 LLNCDDHGYLLKK--DGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
+L+ H LKK DG G RPDIVH CLL ++S N+ G L+VY+HT + +I +
Sbjct: 39 ILDSTYHHAALKKLPDGDRRG--RPDIVHICLLNALESIANKEGFLRVYVHTRNDEVIHI 96
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLP-VGVRKIGTSFS 141
P+TR+PR + RF GLM L K +V ++LL++ K P+ + + +
Sbjct: 97 KPETRLPRNYNRFLGLMESLFKKGAV---PEGLELLRIEKKPLESLIEDINPDTVFIMHE 153
Query: 142 SSKLTKP---ADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSA 198
+L +P +++ + + V+V+G HG +S+ PL A +++
Sbjct: 154 EGELIRPRSFGEILASHQNPVVVVGGFPHGDFMRPIEGTKVSLYREPLMAWTVVSEVIVN 213
Query: 199 FEEAWGV 205
FE A G+
Sbjct: 214 FEAALGL 220
>sp|A3DNG9|NEP1_STAMF Ribosomal RNA small subunit methyltransferase Nep1
OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1) GN=nep1 PE=3 SV=1
Length = 230
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 25 LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
LL+ H + +KK + RPDIVH LL ++SPLN+ G L++YIHT +I V P
Sbjct: 44 LLDVSLHYHAMKKLKDKEKRGRPDIVHISLLNALESPLNKEGYLRIYIHTYPGHIIFVKP 103
Query: 85 QTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF--SS 142
+TRIPR + RF GLM QLL V DS+ LL V I+ L + K G
Sbjct: 104 ETRIPRNYNRFVGLMEQLLIHGKV-PPDSDDPLLYVKTMTISDLLE-KINKNGIILLREH 161
Query: 143 SKLTKPADLV--PADEPIVIVIGAMAHGQVDTDYTEGNISIS-------NFPLSAALTCT 193
+ KP ++V + I IG HG DY++ ISIS N PL+ +T +
Sbjct: 162 GEKEKPENIVKYAVENNYAIGIGGFPHG----DYSQEIISISKAEFSIYNKPLTTWITIS 217
Query: 194 KLCSAFEEAWGV 205
++ E + +
Sbjct: 218 RVIVGAEHLYNI 229
>sp|B6YTM6|NEP1_THEON Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
onnurineus (strain NA1) GN=nep1 PE=3 SV=1
Length = 219
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 25 LLNCDDHGYLLKK--DGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
LL+ H LKK DG G RPDIVH CLL ++S N+ G L+VY+HT + +I +
Sbjct: 39 LLDSTYHHSALKKLEDGERRG--RPDIVHVCLLNALESIANKEGKLRVYVHTRNDEVIYI 96
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL----PVGVRKIGT 138
P+TRIPR + RF GLM L F ++LL++ + + + + P GV +
Sbjct: 97 KPETRIPRNYNRFVGLMESL---FKNGVVPEGLELLRMEEKSLAELIDEIKPDGVFVMHE 153
Query: 139 SFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSA 198
+ S K + ++ + ++V+G HG ++ IS+ PL A ++
Sbjct: 154 NGESMKPQEFGKVLAGLQSPLVVVGGFPHGDFRSEIPGKKISLYKAPLMAWTVVNEIIIN 213
Query: 199 FE 200
FE
Sbjct: 214 FE 215
>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1
Length = 229
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 11/173 (6%)
Query: 37 KDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFA 96
+DG G RPDIVH CLL +DS LN+ L+VY+HT + +I + P+TR+PR + RF
Sbjct: 58 EDGERRG--RPDIVHICLLNALDSILNKEDRLRVYVHTRNDYVIYIKPETRLPRNYNRFI 115
Query: 97 GLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPAD----LV 152
GLM L K +V +++ K N + + + V + +L P + L
Sbjct: 116 GLMENLFEKGAVPEDLELLRMEKKTLNELIEEINPDV--VFIMHEEGELMIPKNFGKLLD 173
Query: 153 PADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGV 205
+P VIV G HG + IS+ PL A ++ ++E W V
Sbjct: 174 KFKKPTVIV-GGFPHGDFKSKVDGVKISLYREPLMAWTIVNEVIVSYE--WEV 223
>sp|Q57977|NEP1_METJA Ribosomal RNA small subunit methyltransferase Nep1
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nep1 PE=1
SV=1
Length = 205
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
+++L+ + H ++K + RPDI+H LL ++DSP+N L +YIHT + ++++
Sbjct: 31 YDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKI 90
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL-PVGVRKIGTSFS 141
NP+TR+PR + RF G+M ++L + N L+K+ + + L + +KI
Sbjct: 91 NPETRLPRNYFRFLGVMEKVL------KGERN-HLIKMEEKTLEDLLNEINAKKIAIMTK 143
Query: 142 SSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLC 196
+ KLT P L D +IG +G++ + + ISI N L A C +C
Sbjct: 144 TGKLTHPKLLKEYD---TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIIC 200
Query: 197 SAF 199
+
Sbjct: 201 YSL 203
>sp|C6A116|NEP1_THESM Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=nep1 PE=3 SV=1
Length = 220
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 25 LLNCDDHGYLLK--KDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
LL+ H LK KDG G RPDIVH CL+ ++S LN+ G L+VY+HT N +I +
Sbjct: 39 LLDSTYHHTALKSLKDGERRG--RPDIVHLCLINALESILNKEGKLRVYVHTRNNEVIYI 96
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL-PVGVRKIGTSFS 141
P+TR+PR + RF GLM L F R ++ LL++ +++ + +G +
Sbjct: 97 KPETRLPRNYNRFVGLMESL---FKNRVIPKDLALLRIENKTLSEIIGDIGPDAVFIMHE 153
Query: 142 SSKLTKPAD----LVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCS 197
+ L P L P VIV G HG + ISI PL A ++
Sbjct: 154 NGVLMSPQSFGRKLNEYISPAVIV-GGFPHGDFLSVLEGEKISIYKEPLMAWSVVNEVLI 212
Query: 198 AFE 200
+E
Sbjct: 213 NYE 215
>sp|Q9V0M0|NEP1_PYRAB Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=nep1 PE=3 SV=1
Length = 232
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 25 LLNCDDHGYLLKK--DGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
+L+ H LK+ DG G RPDIVH CLL +DS LN+ L+VY+HT + +I +
Sbjct: 44 ILDSTYHHAALKQLEDGERRG--RPDIVHICLLNALDSILNKEDRLRVYVHTRNDYVIYI 101
Query: 83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL-PVGVRKIGTSFS 141
P+TR+PR + RF GLM L K +V +++LL++ + + + + + +
Sbjct: 102 KPETRLPRNYNRFIGLMESLFEKGAV---PEDLELLRLERKTLQELINEINPDAVFVMHE 158
Query: 142 SSKLTKPAD---LVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSA 198
+L P + L+ + ++IG HG + IS+ PL A ++ +
Sbjct: 159 EGELMIPKNFGKLLDKFKKPAVIIGGFPHGDFRSRVEGVKISLYKEPLMAWTIVNEVIVS 218
Query: 199 FEEAWGV 205
+E W V
Sbjct: 219 YE--WEV 223
>sp|Q8U1E6|NEP1_PYRFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=nep1 PE=3 SV=2
Length = 223
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 37 KDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFA 96
+DG G RPDIVH CLL +DS LN+ L+VY+HT + +I V+P TR+PR + RF
Sbjct: 56 EDGERRG--RPDIVHICLLNALDSILNKEDRLRVYVHTRNDEVIYVDPSTRLPRNYNRFI 113
Query: 97 GLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL-PVGVRKIGTSFSSSKLTKP---ADLV 152
GLM L F + +++LL++ K + + + + + + + P L+
Sbjct: 114 GLMESL---FEKKVVPEDLQLLRLEKKTLAELINEISPDAVFIMHENGEFMIPKHFGKLL 170
Query: 153 PADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGV 205
+ + V+++G HG + IS+ PL A ++ ++E W V
Sbjct: 171 ASFKKPVVIVGGFPHGDFRSKVEGVKISLYREPLMAWTIVNEVIVSYE--WEV 221
>sp|B1YD95|NEP1_PYRNV Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=nep1 PE=3 SV=1
Length = 221
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 37 KDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFA 96
+DG G RPDIVHQ LL+ S LNR GL +VYIHT + +I+V PQTRIP+ + F
Sbjct: 52 EDGARRG--RPDIVHQVLLVFQYSLLNRRGLGRVYIHTRGDYIIQVKPQTRIPKNYNNFV 109
Query: 97 GLMVQLLHKFSV-RASDSNIKLLKVIKNPITQHLP-VGVRKIGTSFSSSKLTKPADLVPA 154
LM QL +++ RA L+++ + + L +G R + ++ + A+L A
Sbjct: 110 SLMEQL---YALGRAPPHGDSLMELHRGSLAGLLEQLGGRWVVLHERGAR-RRFAELGAA 165
Query: 155 DEPIVIVIGAMAHGQVDTDY----TEGNISISNFPLSAALTCTK 194
V+V+G HG + E S+ + PL AA +
Sbjct: 166 LLNSVVVVGGFPHGDFSNRWVLEKAEAVYSVGDEPLDAAQAVCR 209
>sp|A0B5L3|NEP1_METTP Ribosomal RNA small subunit methyltransferase Nep1 OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=nep1 PE=3 SV=1
Length = 226
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVH LL+ ++S LNR G L+VYIHT N +I ++P TRIP+ + RF GLM L K
Sbjct: 60 RPDIVHVFLLVALESVLNRVGQLRVYIHTRNNEMITIDPTTRIPKNYPRFVGLMESLFEK 119
Query: 106 FSV 108
SV
Sbjct: 120 GSV 122
>sp|O29524|NEP1_ARCFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=nep1 PE=1 SV=1
Length = 219
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVHQCLL+L+DSPL +VY+HT +I VN +TR+PR + RF GLM +L +
Sbjct: 61 RPDIVHQCLLLLLDSPLRD---FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEE 117
Query: 106 FSVRASDSNIKLLKVI--KNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIG 163
+ A D+ + K + ++ + + R+ G F S+L D + + IG
Sbjct: 118 RRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELL--------DGDVAVCIG 169
Query: 164 AMAHG 168
A HG
Sbjct: 170 AFPHG 174
>sp|Q9HJ48|NEP1_THEAC Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=nep1 PE=3 SV=2
Length = 222
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDI++ L M +S LN L+ Y+HT N +I ++P TR+P+++ RF GL L K
Sbjct: 62 RPDIIYLLLEMTQESILNHKNQLRTYVHTRNNQVIRISPITRMPKSYNRFIGLFEDLFEK 121
Query: 106 FSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSK--LTKPADLVPADEPIVIVIG 163
R +N K L ++ L +R+ T K + KP++ + ++ I+IVIG
Sbjct: 122 ---RIITNNGKELLSMEESSLGDLINSIRRDRTILLHPKGEMRKPSEFI-SNANILIVIG 177
Query: 164 AMAHGQV--DTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT 206
+ G DT + +I + L+ ++ + +E A G+T
Sbjct: 178 GFSEGDFISDTSFINERYAIFDQELTIWSVANEMVANYERAVGLT 222
>sp|Q979E4|NEP1_THEVO Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=nep1 PE=3 SV=1
Length = 222
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 39 GREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGL 98
G RPDI++ L M +S LNR LL+ YIHT + +I+++P TR+P+++ RF GL
Sbjct: 55 GESKRRGRPDIIYILLEMAQESILNRKNLLRTYIHTRNDFVIKISPITRMPKSYNRFIGL 114
Query: 99 MVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSK--LTKPADLVPADE 156
L K + +N K L ++ L ++K T K KP++ + + E
Sbjct: 115 FEDLFEKEII---TNNGKTLLSLERMKLDELLESLKKDRTILLHPKGEFKKPSEFI-STE 170
Query: 157 PIVIVIGAMAHGQVDTDYTE--GNISISNFPLSAALTCTKLCSAFEEAWGV 205
I +IG + G +D + SI L+ ++ +++E A G+
Sbjct: 171 DIAAIIGGFSEGDFRSDVSNIPEKYSIFRDELTIWSVGLEIVASYERAIGL 221
>sp|Q96YP4|NEP1_SULTO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=nep1 PE=3 SV=1
Length = 219
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVH LLM + + G +VYIHT +I VN R P+ + RF GL QLL
Sbjct: 61 RPDIVHLALLMFLTEKVPIKG--EVYIHTIDGKIIYVNSDMRPPKNYNRFIGLAEQLLLH 118
Query: 106 FSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAM 165
V +D+N L+K++ +T KIG K KP +L E ++ +GA
Sbjct: 119 GQVPINDAN-PLMKILNIKLTDL--KSKYKIGVLSEDGKKVKPEELCNLGENWLLGVGAF 175
Query: 166 AHGQVDTD---YTEGNISISNFPLSAALTCTKLCSA 198
HG + + SISN+ L ++ SA
Sbjct: 176 PHGDFSEEIKGVADEYFSISNYKLETHQVICRIISA 211
>sp|Q97WJ0|NEP1_SULSO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=nep1 PE=3 SV=2
Length = 218
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 25 LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
LL+ H + +K RPDI+HQ LL+++ P+ + ++IHT ++ +I+VNP
Sbjct: 40 LLDISLHYHAMKYLENSHKRGRPDILHQALLVILTDPVIKG---DIFIHTIQSKIIKVNP 96
Query: 85 QTRIPRTFKRFAGLMVQLLH--KFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
R P+ + RF GLM QLL K + ++ +++ + + I + I S
Sbjct: 97 NMRPPKNYLRFIGLMEQLLKYGKIPINGDETLMEVTNLTLDNIVNRYDL----ILLSEKG 152
Query: 143 SKLTKPADLVPADEPIVIVIGAMAHGQVDT---DYTEGNISISNFPLSAALTCTKLCSAF 199
K+ P ++ DE ++ IGA HG + + SIS FPL ++ SA
Sbjct: 153 EKIN-PEEICKLDEKWLLGIGAFPHGDFSDKILNLAKKIYSISGFPLETQQVLCRIFSAC 211
Query: 200 EEAWG 204
G
Sbjct: 212 NSILG 216
>sp|A1RVH0|NEP1_PYRIL Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=nep1 PE=3
SV=1
Length = 221
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVHQ LL+ S LN+ GL ++YIHT+ + I V +TRIP+ + F LM QL
Sbjct: 59 RPDIVHQVLLVFQYSLLNKRGLGRIYIHTQGDYTIYVRWETRIPKNYNNFVSLMEQLYA- 117
Query: 106 FSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF---SSSKLTKP-ADLVPADEPIVIV 161
+ R L+++ K ++ L R++G + S + KP +L A V+V
Sbjct: 118 -TGRVPPKGEPLIELYKKDLSTLL----RELGGRWVVLHESGVKKPFIELGAALLNSVVV 172
Query: 162 IGAMAHGQVDTDY----TEGNISISNFPLSAALTCTKLCSAFEEAWGV 205
IG HG + + I + + AA + +A E A G+
Sbjct: 173 IGGFPHGDFTNKWVLEKADAIYKIGDETMDAAQVVYRAITAAEVAAGL 220
>sp|A3MWJ1|NEP1_PYRCJ Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=nep1 PE=3 SV=1
Length = 221
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 25 LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
LL+ H + K + RPDIVHQ LL S LNRAG + ++HT + +I V P
Sbjct: 38 LLDRARHHVAMAKLDKAERRGRPDIVHQVLLAFQYSLLNRAGRGRAFVHTVGDYIISVKP 97
Query: 85 QTRIPRTFKRFAGLMVQLL 103
+TR+P+ + F LM QL
Sbjct: 98 ETRVPKNYNNFVSLMEQLF 116
>sp|Q9YES9|NEP1_AERPE Ribosomal RNA small subunit methyltransferase Nep1 OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=nep1 PE=3 SV=1
Length = 224
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLL 103
RPDI+H LL DSPL GLL++Y L EV R+P+ ++RF GL+ QLL
Sbjct: 59 RPDILHVALLTTTDSPLYNEGLLRIYFQVYDGRLFEVGTGVRVPKNYERFRGLVAQLL 116
>sp|Q8ZW45|NEP1_PYRAE Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=nep1 PE=3 SV=1
Length = 221
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVHQ LL S L + GL + YIHT + +I V+P+ R+P+ + F L+ QL
Sbjct: 59 RPDIVHQVLLAFQYSLLAKRGLGKAYIHTRDDYVIAVSPEARVPKNYNNFVALIEQL--- 115
Query: 106 FSV-RASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPAD-EPIVIVIG 163
F++ + L+++ + + L + + F S KP + ++ V+V+G
Sbjct: 116 FALGKVPPKGEPLMELYRKDLATLLQ-ELGGVWAVFHESGARKPLSQMGSELLKSVVVVG 174
Query: 164 AMAHGQVDTDYTEGNI----SISNFPLSAALTCTKLCSAFEEAWGV 205
HG + S+ L AA K +A E A G+
Sbjct: 175 GFPHGDFQNKWVVEKAAVVYSLGEESLDAAQVICKAVTAAEVAAGL 220
>sp|A4WMI3|NEP1_PYRAR Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=nep1 PE=3
SV=1
Length = 221
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 38 DGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAG 97
D R G RPDIVHQ LL+ S L GL ++YIHT + +I V+P TR+P+ + F
Sbjct: 53 DSRRRG--RPDIVHQALLVFQYSLLAARGLGRMYIHTLGDYVISVDPSTRVPKNYNNFVS 110
Query: 98 LMVQL 102
L+ QL
Sbjct: 111 LVEQL 115
>sp|Q8R500|MFN2_RAT Mitofusin-2 OS=Rattus norvegicus GN=Mfn2 PE=1 SV=1
Length = 757
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 117 LLKVIKNPITQHLPVGV-----RKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVD 171
+LKV KN + +H+ G+ + T+ +SS T D++ +P++ V Q+D
Sbjct: 458 VLKVYKNELHRHIEEGLGRNMSDRCSTAIASSLQTMQQDMIDGLKPLLPV---SVRNQID 514
Query: 172 TDYTEGNISISNFPLSAALTCTKLCSAFEE 201
+ F LS L C KLC+ F+E
Sbjct: 515 M-----LVPRQCFSLSYDLNCDKLCADFQE 539
>sp|Q80U63|MFN2_MOUSE Mitofusin-2 OS=Mus musculus GN=Mfn2 PE=1 SV=3
Length = 757
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 117 LLKVIKNPITQHLPVGV-----RKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVD 171
+LKV KN + +H+ G+ + T+ +SS T D++ +P++ V Q+D
Sbjct: 458 VLKVYKNELHRHIEEGLGRNLSDRCSTAIASSLQTMQQDMIDGLKPLLPV---SMRNQID 514
Query: 172 TDYTEGNISISNFPLSAALTCTKLCSAFEE 201
+ F LS L C KLC+ F+E
Sbjct: 515 M-----LVPRQCFSLSYDLNCDKLCADFQE 539
>sp|Q4K441|SSUB2_PSEF5 Aliphatic sulfonates import ATP-binding protein SsuB 2
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=ssuB2 PE=3 SV=1
Length = 268
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 125 ITQHLPVGVRKIGTSFSSSKLTKPADL-VPADEPIVIVIGAMAHGQVD--------TDYT 175
+ Q +P+ VRK+ +F S ++ + DL +PA + V V+G G+ +
Sbjct: 9 LLQGIPLAVRKLQKTFGSRQVLREIDLHIPAGQ-FVAVVGRSGCGKSTLLRLLAGLDQPS 67
Query: 176 EGNISISNFPLSAALTCTKLCSAFEEA 202
G + + PLSAA+ T+L F+EA
Sbjct: 68 AGELLAGSAPLSAAIEDTRLM--FQEA 92
>sp|O95140|MFN2_HUMAN Mitofusin-2 OS=Homo sapiens GN=MFN2 PE=1 SV=3
Length = 757
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 93 KRFAGLMVQLLHKFSVRASDSNIK------LLKVIKNPITQHLPVGV-----RKIGTSFS 141
++ + M + + + SV D + +LKV KN + +H+ G+ + T+ +
Sbjct: 428 RQVSTAMAEEIRRLSVLVDDYQMDFHPSPVVLKVYKNELHRHIEEGLGRNMSDRCSTAIT 487
Query: 142 SSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEE 201
+S T D++ +P++ V Q+D + F L+ L C KLC+ F+E
Sbjct: 488 NSLQTMQQDMIDGLKPLLPV---SVRSQIDM-----LVPRQCFSLNYDLNCDKLCADFQE 539
>sp|P47134|BIR1_YEAST Protein BIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=BIR1 PE=1 SV=1
Length = 954
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 5 HYKVAQNYFIFNFQTKNAFELLNCDD 30
HYKV+QN + FQT+N FE + D+
Sbjct: 228 HYKVSQNGNCYFFQTRNRFERIKNDN 253
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,418,383
Number of Sequences: 539616
Number of extensions: 3019185
Number of successful extensions: 5914
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5866
Number of HSP's gapped (non-prelim): 35
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)