Query psy14698
Match_columns 206
No_of_seqs 107 out of 235
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:20:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oii_A Essential for mitotic g 100.0 1.3E-83 4.4E-88 559.6 16.9 202 3-205 40-252 (253)
2 3bbd_A Ribosome biogenesis pro 100.0 1.1E-78 3.8E-83 516.4 13.3 186 5-201 3-205 (205)
3 3o7b_A Ribosome biogenesis NEP 100.0 4.6E-76 1.6E-80 509.9 10.2 190 4-202 27-238 (244)
4 2qmm_A UPF0217 protein AF_1056 100.0 3.2E-30 1.1E-34 217.8 5.9 148 36-200 22-193 (197)
5 3aia_A UPF0217 protein MJ1640; 99.9 6.6E-28 2.3E-32 205.5 8.9 145 43-200 31-204 (211)
6 2qwv_A UPF0217 protein VC_A105 96.9 0.016 5.6E-07 49.0 12.4 152 42-199 30-201 (208)
7 4fak_A Ribosomal RNA large sub 96.3 0.0017 5.9E-08 52.9 2.5 75 126-203 68-153 (163)
8 1o6d_A Hypothetical UPF0247 pr 95.6 0.0068 2.3E-07 49.4 3.0 76 125-203 58-143 (163)
9 1to0_A Hypothetical UPF0247 pr 95.1 0.011 3.7E-07 48.3 2.7 73 128-203 66-149 (167)
10 1ns5_A Hypothetical protein YB 94.4 0.0095 3.2E-07 48.1 0.7 73 127-203 62-144 (155)
11 2kw3_C Regulatory factor X-ass 56.5 7.8 0.00027 26.5 2.6 20 42-61 9-32 (62)
12 4e8b_A Ribosomal RNA small sub 51.4 26 0.00088 29.4 5.8 77 124-204 155-240 (251)
13 1dd4_C 50S ribosomal protein L 36.5 24 0.00081 22.0 2.4 15 192-206 18-32 (40)
14 4h3z_A TRNA (guanine-N(1)-)-me 35.4 8.5 0.00029 33.6 0.2 66 132-201 106-179 (276)
15 1oey_J P40-PHOX, neutrophil cy 33.7 70 0.0024 24.1 5.0 56 66-123 6-68 (107)
16 3ief_A TRNA (guanine-N(1)-)-me 31.9 20 0.00068 30.6 1.9 77 120-200 65-152 (233)
17 1oy5_A TRNA (guanine-N(1)-)-me 31.3 32 0.0011 29.7 3.1 67 133-201 84-155 (257)
18 3knu_A TRNA (guanine-N(1)-)-me 29.9 15 0.00052 31.7 0.9 63 133-199 102-172 (253)
19 1ual_A TRNA (guanine-N(1)-)-me 28.7 15 0.00051 32.0 0.6 64 133-200 102-173 (274)
20 3ky7_A TRNA (guanine-N(1)-)-me 26.7 40 0.0014 29.3 3.0 63 133-199 104-174 (269)
21 4fmw_A RNA (guanine-9-)-methyl 25.4 44 0.0015 27.3 2.9 44 118-167 87-130 (197)
22 2faz_A Ubiquitin-like containi 24.2 44 0.0015 21.9 2.3 39 66-111 1-43 (78)
23 3quv_A TRNA (guanine-N(1)-)-me 23.6 53 0.0018 28.2 3.1 65 132-199 81-156 (246)
24 2ve8_A FTSK, DNA translocase F 22.8 66 0.0022 22.6 3.0 24 91-114 37-60 (73)
25 2dk7_A Transcription elongatio 20.9 54 0.0019 23.1 2.2 21 67-87 20-40 (73)
26 2vlg_A Sporulation kinase A; h 20.1 48 0.0017 23.3 1.9 17 70-86 12-28 (111)
No 1
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=100.00 E-value=1.3e-83 Score=559.59 Aligned_cols=202 Identities=51% Similarity=0.875 Sum_probs=190.6
Q ss_pred CceEEEeccCceeeEee------cCceEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEecC
Q psy14698 3 GGHYKVAQNYFIFNFQT------KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK 76 (206)
Q Consensus 3 ~~~~~~l~~a~le~~k~------~~~~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~ 76 (206)
...+|||++|+||++|. +++|+|||+++||++|++++++++||||||||||||++|||||||+|+|||||||.|
T Consensus 40 ~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~VYIhT~~ 119 (253)
T 3oii_A 40 KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSR 119 (253)
T ss_dssp CCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEEEEEEETT
T ss_pred ceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceEEEEEecC
Confidence 35899999999999996 578999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCCCeEEEEeccCCcccCCCccCC---
Q psy14698 77 NVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVP--- 153 (206)
Q Consensus 77 ~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~~~~i~ls~~g~~~v~~~~~~~--- 153 (206)
|++|+|||++||||||+||+|||+|||++++|++.+++++||++++|||++|||+|+++|+||++|+ .+++.++++
T Consensus 120 ~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~g~-~v~~~~~~~~l~ 198 (253)
T 3oii_A 120 GILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLD 198 (253)
T ss_dssp SCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTTSC-BCCHHHHHHTSC
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccCCC-ccCHHHHHHhcc
Confidence 9999999999999999999999999999999999877789999999999999999999999999997 889988764
Q ss_pred CCCCeEEEECccccC--CCCCCCcceeEEecCCCCCHHHHHHHHHHHHHHHhCC
Q psy14698 154 ADEPIVIVIGAMAHG--QVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGV 205 (206)
Q Consensus 154 ~~~~~~~~IGafp~G--d~~~~~~~~~isIs~~~Lsa~~v~~ri~~~~E~~~gi 205 (206)
++.++||+||||||| +|+++|.++.||||+||||||+||++||++||++|||
T Consensus 199 ~~~~i~vvVGafahG~~~f~~~~~~e~iSIs~ypLsa~~~c~kic~a~E~~w~i 252 (253)
T 3oii_A 199 DDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI 252 (253)
T ss_dssp TTCEEEEEEECSSSCCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEeeeCCCCCcccchhcceeEEEeCCChhHHHHHHHHHHHHHHHhCc
Confidence 346899999999999 6888999999999999999999999999999999997
No 2
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=100.00 E-value=1.1e-78 Score=516.42 Aligned_cols=186 Identities=26% Similarity=0.387 Sum_probs=177.6
Q ss_pred eEEEeccCceeeE--------eecC--ceEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEe
Q psy14698 5 HYKVAQNYFIFNF--------QTKN--AFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHT 74 (206)
Q Consensus 5 ~~~~l~~a~le~~--------k~~~--~~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT 74 (206)
.+|||++|+||++ |+|| +|+|||+++||++|++++++++||||||||||||++|||||||+|+|||||||
T Consensus 3 l~vvL~~a~LE~vP~ei~~a~k~gk~p~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~llDSpLNk~G~L~VYIhT 82 (205)
T 3bbd_A 3 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHT 82 (205)
T ss_dssp EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEEEEEEE
T ss_pred EEEEECCCccccChhhhhhhHhcCCCCcceecchHHHHHHHHhcccchhccCCcHHHHHHHHHhcChHHHCCCeEEEEEe
Confidence 5799999999999 9988 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCC--CeEEEEeccCCcccCCCccC
Q psy14698 75 EKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVG--VRKIGTSFSSSKLTKPADLV 152 (206)
Q Consensus 75 ~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~--~~~i~ls~~g~~~v~~~~~~ 152 (206)
.||++|+|||++||||||+||+|||+|||++++ ++|||++++|+++|+|++ +++|+||++|+ .+++.+++
T Consensus 83 ~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~-------~~Llkvik~~l~~~lp~~~~~~~i~ls~~g~-~v~~~~~~ 154 (205)
T 3bbd_A 83 YDDKVLKINPETRLPRNYFRFLGVMEKVLKGER-------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGK-LTHPKLLK 154 (205)
T ss_dssp TTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCC-------CSSEEEEECCHHHHHHHTTCCEEEEEEEEEE-ECCGGGGG
T ss_pred cCCEEEEECCCCCCCCCHHHHHHHHHHHHHhCc-------hhheEEEcCCHHHhcCCCCCceEEEEcCCCc-ccCHHHHh
Confidence 999999999999999999999999999999997 579999999999999987 79999999997 88999987
Q ss_pred CCCCCeEEEECccccCCCCCC---Cccee--EEecCCCCCHHHHHHHHHHHHHH
Q psy14698 153 PADEPIVIVIGAMAHGQVDTD---YTEGN--ISISNFPLSAALTCTKLCSAFEE 201 (206)
Q Consensus 153 ~~~~~~~~~IGafp~Gd~~~~---~~~~~--isIs~~~Lsa~~v~~ri~~~~E~ 201 (206)
.+ . +|+|||||||||+.+ ++++. ||||+||||||+||+|||++||.
T Consensus 155 -~~-~-~~~IGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v~~ri~~~~~~ 205 (205)
T 3bbd_A 155 -EY-D-TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF 205 (205)
T ss_dssp -GC-S-EEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHHHHHHHHHHHC
T ss_pred -CC-C-EEEEccccCCCcchhhhhhhccccEEEEeCCChhHHHHHHHHHHHhhC
Confidence 33 3 999999999999988 89999 99999999999999999999983
No 3
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.6e-76 Score=509.93 Aligned_cols=190 Identities=26% Similarity=0.370 Sum_probs=178.0
Q ss_pred ceEEEeccCceeeEe---------------ecCc--eEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCC
Q psy14698 4 GHYKVAQNYFIFNFQ---------------TKNA--FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAG 66 (206)
Q Consensus 4 ~~~~~l~~a~le~~k---------------~~~~--~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G 66 (206)
+.++||.+|+||+++ .||+ |+|||+++||+||++++++++||||||||||||++|||||||
T Consensus 27 ~l~vVL~ea~LElvp~ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~~amkkl~~~~krgRPDIvHq~LL~llDSpLNk-- 104 (244)
T 3o7b_A 27 GSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRD-- 104 (244)
T ss_dssp CEEEEEEEESCCBCCGGGTTSHHHHHHHHHHTSCGGGSBCCHHHHGGGCTTCTTGGGCSCHHHHHHHHHHHHTCSCCS--
T ss_pred EEEEEECCCcccccchhhccCcchhhhhhhcCCCccccccchHHHHHHHHHCCChhhccCccHHHHHHHHHhhChhhh--
Confidence 467999999999996 3444 999999999999999999999999999999999999999998
Q ss_pred cceEEEEecCCEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCCCeEEEEeccCCccc
Q psy14698 67 LLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLT 146 (206)
Q Consensus 67 ~L~VyIhT~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~~~~i~ls~~g~~~v 146 (206)
|||||||.||+||+|||++||||||+||+|||+|||++++|++. +++||++++|||++++|++ ++|+||++|+ .+
T Consensus 105 -L~VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~~--~~~LLkvik~~l~~~lp~~-~~I~lS~~G~-~v 179 (244)
T 3o7b_A 105 -FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAG--DTTLIEFKDVGLRDIVRGR-DVLLFREKGG-RF 179 (244)
T ss_dssp -EEEEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEET--TEEEEEEESSCHHHHTTTS-EEEEEEEEEE-CC
T ss_pred -eEEEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCCC--CCeeEEEEcCCHHHhcCCC-cEEEEccCCC-cC
Confidence 99999999999999999999999999999999999999999993 5899999999999999998 9999999997 88
Q ss_pred CCCccCCCCCCeEEEECccccCCCCCCCc-----ceeEEecCCCCCHHHHHHHHHHHHHHH
Q psy14698 147 KPADLVPADEPIVIVIGAMAHGQVDTDYT-----EGNISISNFPLSAALTCTKLCSAFEEA 202 (206)
Q Consensus 147 ~~~~~~~~~~~~~~~IGafp~Gd~~~~~~-----~~~isIs~~~Lsa~~v~~ri~~~~E~~ 202 (206)
++.++++... +|+|||||||||+++|. ++.||||+||||||+||+|+|++||++
T Consensus 180 ~~~~~~~~~~--~~vIGafphGdf~~~~~~~~~~~~~iSIs~~pLsa~~v~~ri~~a~E~~ 238 (244)
T 3o7b_A 180 EFSELLDGDV--AVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERV 238 (244)
T ss_dssp CHHHHTSSSE--EEEEECSSSSCCCHHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhcCC--EEEECcccCCCccHhhhhhccCccEEEEeCCChHHHHHHHHHHHHHHHh
Confidence 9999986533 99999999999998873 679999999999999999999999987
No 4
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=99.96 E-value=3.2e-30 Score=217.82 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=130.6
Q ss_pred HhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEecC------------CEEEEEcCCCCCCCChhHHHHHHHHHh
Q psy14698 36 KKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK------------NVLIEVNPQTRIPRTFKRFAGLMVQLL 103 (206)
Q Consensus 36 ~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~------------~~lI~V~P~~RiPRty~rF~gLM~qLL 103 (206)
++++. +|||||+|+||+++|.|++|..|.++||+||.+ ++|++|+|+.| ||.|||+|+|
T Consensus 22 ~~Lpg---~GR~DIl~r~l~~al~~s~~~R~dv~vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR------~~~gli~kaL 92 (197)
T 2qmm_A 22 NDLPG---AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSILIKGDEVRRMSPDER------NVAGHIKKAL 92 (197)
T ss_dssp TCTTT---TTSHHHHHHHHHHHHEETTEECTTEEEEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHH
T ss_pred hhcCC---CCCceeHHHHHHHHHhhhhcccCCeEEEEEECCCCCCCeeEEecCCeEEEcChhHH------HHHHHHHHHH
Confidence 34544 999999999999999999999999999999999 99999999999 9999999999
Q ss_pred hh--CceecCCCCccceEEEeccccccccC-C--CeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCCC-----
Q psy14698 104 HK--FSVRASDSNIKLLKVIKNPITQHLPV-G--VRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTD----- 173 (206)
Q Consensus 104 ~~--~~V~~~~~~~~Llkv~~~~l~~~lp~-~--~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~~----- 173 (206)
++ +++++. .+|++++.+.++++++.. + .++|.|+++|+ .+...++ ..+.+|++|+ ||+|+++
T Consensus 93 ~~~~~~~~~~--~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~-~i~~~~~---~~~~~fvlGd--H~~f~~e~~~~l 164 (197)
T 2qmm_A 93 AVECGKSWKK--VHSGVYVSRKGLEELIEELSEKYSIIYLKEDGV-DISNAQL---PPNPLFVIGD--HEGLTEEQEKVV 164 (197)
T ss_dssp HSCCCSSCEE--EETTEEEECCCHHHHHHHHHHHSEEEEEEEEEE-EGGGSCC---CSSEEEEEEC--TTCCCHHHHHHH
T ss_pred HhccCcccCC--CCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCC-CCchhhc---CCCCEEEEeC--CCCCCHHHHHHH
Confidence 99 888765 468999999999999985 2 36999999998 6555565 2468999999 9999876
Q ss_pred --CcceeEEecCCCCCHHHHHHHHHHHHH
Q psy14698 174 --YTEGNISISNFPLSAALTCTKLCSAFE 200 (206)
Q Consensus 174 --~~~~~isIs~~~Lsa~~v~~ri~~~~E 200 (206)
.+++.|||++.+|.||+|++++-+.+-
T Consensus 165 ~~~~~~~iSigp~~L~A~~vi~~vh~~ld 193 (197)
T 2qmm_A 165 ERYAALKLSLSPLSLLAEQCVVIAHHHLD 193 (197)
T ss_dssp HTTCSEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHhcCeEEEECCchhHHHHHHHHHHHHHh
Confidence 477999999999999999999987763
No 5
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=99.94 E-value=6.6e-28 Score=205.49 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=127.3
Q ss_pred CCCCCChHHHHHHHhhCchhhcCCcceEEEEecCC----EEEE--------EcCCCCCCCChhHHHHHHHHHhhhCc---
Q psy14698 43 GSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKN----VLIE--------VNPQTRIPRTFKRFAGLMVQLLHKFS--- 107 (206)
Q Consensus 43 ~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~~----~lI~--------V~P~~RiPRty~rF~gLM~qLL~~~~--- 107 (206)
.+|||||+|+||+++|.+++|..|.++||+||.++ ++|+ |+|+.| ||.|||+|+|++++
T Consensus 31 ~~GR~DIl~r~l~~Al~~s~~~R~dv~vyl~l~~~p~p~~~I~f~g~~lr~v~PdeR------s~~~li~kaL~~~~~~~ 104 (211)
T 3aia_A 31 SCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDER------NIAIFIKKALKKFEELD 104 (211)
T ss_dssp TTTSHHHHHHHHHHHHBCSSSBCTTEEEEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHHHHHSC
T ss_pred CCCCeehHHHHHHHHHhhhhcccCCeEEEEEECCCCCCceEEEEcCccccccChhHH------HHHHHHHHHHHhccccc
Confidence 58999999999999999999999999999999999 9999 999999 99999999999976
Q ss_pred --eecCC-CCccceEEEeccccccccC---CC-eEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCCC-------
Q psy14698 108 --VRASD-SNIKLLKVIKNPITQHLPV---GV-RKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTD------- 173 (206)
Q Consensus 108 --V~~~~-~~~~Llkv~~~~l~~~lp~---~~-~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~~------- 173 (206)
+++.+ +.+|++++.+.++++++.. .. ++|.|+++|+ .+...++ .+.+|++|+ ||+|+++
T Consensus 105 ~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~~v~~L~E~G~-~i~~~~~----~~~~fvlGd--H~~f~~e~~~~L~~ 177 (211)
T 3aia_A 105 EEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGE-DVENVDI----ENPVFIIGD--HIGIGEEDERFLDE 177 (211)
T ss_dssp TTGGGSCEEEETTEEEECCCHHHHHHHHHHTTCEEEEEEEEEE-EGGGCCC----CSEEEEEEC--SSCSCHHHHHHHHH
T ss_pred ccCCcccccCCCCeEEEcCCHHHHHHHHhhcCCcEEEEcCCCC-CCccccc----CCcEEEEEC--CCCCCHHHHHHHHh
Confidence 77621 2469999999999999985 23 6999999998 5555555 467999999 9999876
Q ss_pred CcceeEEecCCCCCHHHHHHHHHHHHH
Q psy14698 174 YTEGNISISNFPLSAALTCTKLCSAFE 200 (206)
Q Consensus 174 ~~~~~isIs~~~Lsa~~v~~ri~~~~E 200 (206)
.+.+.|||++.+|.||+|++++-+.+-
T Consensus 178 ~~~~~iSigp~~L~A~hvi~~vh~~LD 204 (211)
T 3aia_A 178 IKAKRISLSPLELHANHCITIIHNVLD 204 (211)
T ss_dssp TTCEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred hCCeEEEECCcchHHHHHHHHHHHHhc
Confidence 367999999999999999999877653
No 6
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=96.88 E-value=0.016 Score=48.98 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=98.2
Q ss_pred CCCCCCChHHHHHHHhhCchhhcCCcceEEEEecCC----EEEEEcC-CCCC-C-CChhHHHHHHHHHhhhCceecCC--
Q psy14698 42 PGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKN----VLIEVNP-QTRI-P-RTFKRFAGLMVQLLHKFSVRASD-- 112 (206)
Q Consensus 42 ~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~~----~lI~V~P-~~Ri-P-Rty~rF~gLM~qLL~~~~V~~~~-- 112 (206)
-..||.||+=.|+.+++=--=.-..-.+||+.-.++ +.|.+.. ++|- - ..-....+++..-|+++.....+
T Consensus 30 G~~GR~DvLcR~v~sAlflSh~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~ 109 (208)
T 2qwv_A 30 GGKCHTEILAHCMMNSLFTAQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQT 109 (208)
T ss_dssp TSSSCTHHHHHHHHHHHBCSSSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCE
T ss_pred CccCceehHHHHHHHHHHHhccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccc
Confidence 457999999999997763222233345788886664 5665544 3433 2 24567889999999885432211
Q ss_pred -CCccceEEEeccccccccC---CCeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCC-------CCcceeEEe
Q psy14698 113 -SNIKLLKVIKNPITQHLPV---GVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDT-------DYTEGNISI 181 (206)
Q Consensus 113 -~~~~Llkv~~~~l~~~lp~---~~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~-------~~~~~~isI 181 (206)
...|=+.|-+.++++++.. ...++-|+++|+ . .+++.- ..+.+|+.| -|-++++ +.+.+.||+
T Consensus 110 ~~~~pGi~v~~~~fe~ll~e~~~~~~ly~L~e~G~-d--i~~~~~-~~~~~FvLg--DH~g~~~eee~~L~~~~~~~iSl 183 (208)
T 2qwv_A 110 RVVQPGLTVRTISFEALLGELAEHHSLYMMDKKGD-S--IRDIKI-GPNPCFILT--DHIPMPKKSGNSMKRLGVEKISL 183 (208)
T ss_dssp EEEETTEEEECCCHHHHHHHHHTTSEEEEEEEEEE-E--TTTSCC-CSSEEEEEC--C----------CTTTTTCEEEEC
T ss_pred cccCCCEEEecCCHHHHHHHHHhcCcEEEEeCCCc-C--HhhccC-CCCCEEEEc--CCCCCCHHHHHHHHhcCCeEEEe
Confidence 1123378888999999974 225899999998 3 233321 246899999 3434432 246799999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy14698 182 SNFPLSAALTCTKLCSAF 199 (206)
Q Consensus 182 s~~~Lsa~~v~~ri~~~~ 199 (206)
+..+|-||+|+.-+-+.+
T Consensus 184 GP~~l~A~hcI~~vhn~L 201 (208)
T 2qwv_A 184 GPKMLFASQCVTLIHNEI 201 (208)
T ss_dssp CSSCCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 999999999997776655
No 7
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=96.29 E-value=0.0017 Score=52.91 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=51.3
Q ss_pred cccccCCCeEEEEeccCCcccCCCccCC-------C-CCCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHH
Q psy14698 126 TQHLPVGVRKIGTSFSSSKLTKPADLVP-------A-DEPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTK 194 (206)
Q Consensus 126 ~~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~-~~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~r 194 (206)
-..+|+++.+|+|+++|+ ..+-.+|+. . ...++|+||| |.|- +++. ++..+|+|.-.++-..+=--
T Consensus 68 l~~i~~~~~vI~LD~~Gk-~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl-~~~v~~rA~~~lSlS~mTfpHqL~Rli 144 (163)
T 4fak_A 68 LAKIKPQSTVITLEIQGK-MLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGL-HKDVLQRSNYALSFSKMTFPHQMMRVV 144 (163)
T ss_dssp HHTCCTTSEEEEEEEEEE-ECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBC-CHHHHHHCSEEEESCSSCCCHHHHHHH
T ss_pred HHhCCCCCEEEEEcCCCC-cCCHHHHHHHHHHHHhcCCcceEEEEEC-CCcc-CHHHHHhcCceEEEecCCCCHHHHHHH
Confidence 345666778999999997 555555542 1 2469999999 7774 4443 88999999998887665444
Q ss_pred HHHHHHHHh
Q psy14698 195 LCSAFEEAW 203 (206)
Q Consensus 195 i~~~~E~~~ 203 (206)
++.-+-++|
T Consensus 145 L~EQlYRA~ 153 (163)
T 4fak_A 145 LIEQVYRAF 153 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 8
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=95.58 E-value=0.0068 Score=49.40 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=50.3
Q ss_pred ccccccCCCeEEEEeccCCcccCCCccCC-------CCCCeEEEECccccCCCCCC---CcceeEEecCCCCCHHHHHHH
Q psy14698 125 ITQHLPVGVRKIGTSFSSSKLTKPADLVP-------ADEPIVIVIGAMAHGQVDTD---YTEGNISISNFPLSAALTCTK 194 (206)
Q Consensus 125 l~~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~~~~~~~IGafp~Gd~~~~---~~~~~isIs~~~Lsa~~v~~r 194 (206)
+...+|++..+|+|+++|+ ..+-.+|+. ....++|+||| |.|- +++ -++..+|+|.-.++-..+=--
T Consensus 58 il~~i~~~~~vI~LD~~Gk-~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl-~~~v~~rAd~~lSlS~mTfpHqL~Rli 134 (163)
T 1o6d_A 58 LTNRILPGSFVMVMDKRGE-EVSSEEFADFLKDLEMKGKDITILIGG-PYGL-NEEIFAKAHRVFSLSKMTFTHGMTVLI 134 (163)
T ss_dssp HHTTCCTTCEEEEEEEEEE-ECCHHHHHHHHHHHHHHTCCEEEEECC-TTCC-CGGGGGGCSEEEECCSSCCCHHHHHHH
T ss_pred HHHhcCCCCEEEEEcCCCC-cCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC-CHHHHHhhCceEEccCCCCcHHHHHHH
Confidence 3344555556899999997 555555542 13579999999 6663 444 378899999988887655444
Q ss_pred HHHHHHHHh
Q psy14698 195 LCSAFEEAW 203 (206)
Q Consensus 195 i~~~~E~~~ 203 (206)
++.-+-++|
T Consensus 135 L~EQiYRA~ 143 (163)
T 1o6d_A 135 VLEQIFRAF 143 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444344444
No 9
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=95.08 E-value=0.011 Score=48.32 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=48.4
Q ss_pred cccCCCeEEEEeccCCcccCCCccCC-------CC-CCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHHHH
Q psy14698 128 HLPVGVRKIGTSFSSSKLTKPADLVP-------AD-EPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLC 196 (206)
Q Consensus 128 ~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~-~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~ri~ 196 (206)
.+|++..+|+|++.|+ ..+-.+|+. .+ ..++|+||| |.|- +++. ++..+|+|.-.++-..+=--++
T Consensus 66 ~i~~~~~vI~LD~~Gk-~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl-~~~v~~rA~~~lSlS~mTfpHqL~RliL~ 142 (167)
T 1to0_A 66 KISPDAHVIALAIEGK-MKTSEELADTIDKLATYGKSKVTFVIGG-SLGL-SDTVMKRADEKLSFSKMTFPHQLMRLILV 142 (167)
T ss_dssp TSCTTSEEEEEEEEEE-ECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCC-CHHHHHHCSEEEESCSSCCCHHHHHHHHH
T ss_pred hcCCCCEEEEEcCCCC-cCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCC-CHHHHHhhCcEEEccCCCCcHHHHHHHHH
Confidence 4455556899999997 555555542 12 469999999 6663 4443 8899999998888765544444
Q ss_pred HHHHHHh
Q psy14698 197 SAFEEAW 203 (206)
Q Consensus 197 ~~~E~~~ 203 (206)
.-+-++|
T Consensus 143 EQiYRA~ 149 (167)
T 1to0_A 143 EQIYRAF 149 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4344444
No 10
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=94.40 E-value=0.0095 Score=48.08 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=48.2
Q ss_pred ccccCCCeEEEEeccCCcccCCCccCC-------CCCCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHHHH
Q psy14698 127 QHLPVGVRKIGTSFSSSKLTKPADLVP-------ADEPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLC 196 (206)
Q Consensus 127 ~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~ri~ 196 (206)
..+|++ .+|+|++.|+ ..+-.+|+. ....++|+||| |.|- +++. ++..+|+|.-.++-..+=--++
T Consensus 62 ~~i~~~-~vi~Ld~~Gk-~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl-~~~v~~rA~~~lSlS~mT~pHql~RliL~ 137 (155)
T 1ns5_A 62 AAAGKN-RIVTLDIPGK-PWDTPQLAAELERWKLDGRDVSLLIGG-PEGL-SPACKAAAEQSWSLSALTLPHPLVRVLVA 137 (155)
T ss_dssp HHHTTS-EEEEEEEEEE-CCCHHHHHHHHHHHHHHCSCEEEEECB-TTBC-CHHHHHHCSEEECCCSSCCCHHHHHHHHH
T ss_pred HhcCCC-cEEEEcCCCC-cCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC-CHHHHHhhCceEEccCCCCcHHHHHHHHH
Confidence 344555 6899999997 555555542 13579999999 6663 4443 7889999998888765543444
Q ss_pred HHHHHHh
Q psy14698 197 SAFEEAW 203 (206)
Q Consensus 197 ~~~E~~~ 203 (206)
.-+-++|
T Consensus 138 EQiYRA~ 144 (155)
T 1ns5_A 138 ESLYRAW 144 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 11
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=56.50 E-value=7.8 Score=26.45 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=16.5
Q ss_pred CCCCCCChHHHHH----HHhhCch
Q psy14698 42 PGSCRPDIVHQCL----LMLMDSP 61 (206)
Q Consensus 42 ~~~gRPDIvH~~L----L~lldSp 61 (206)
.+-.||||+|+.| +.||-||
T Consensus 9 d~~~rp~l~eqVLNqKk~SLLRsP 32 (62)
T 2kw3_C 9 DRPARPTLLEQVLNQKRLSLLRSP 32 (62)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCccHHHHHHHHHHHHHhcCH
Confidence 4478999999998 6788887
No 12
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=51.44 E-value=26 Score=29.44 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=50.2
Q ss_pred cccccccC--CCeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCCCC-------cceeEEecCCCCCHHHHHHH
Q psy14698 124 PITQHLPV--GVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDY-------TEGNISISNFPLSAALTCTK 194 (206)
Q Consensus 124 ~l~~~lp~--~~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~~~-------~~~~isIs~~~Lsa~~v~~r 194 (206)
++.+++.. ...++.+++.+... +.++....++++++|| |.|.|+++. .-..+|++..-|-|-|++--
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~l~IG--PEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~ 230 (251)
T 4e8b_A 155 DLEAWCAEQDEGLKLNLHPRASNS--INTLPLPVERVRLLIG--PEGGLSADEIAMTARYQFTDILLGPRVLRTETTALT 230 (251)
T ss_dssp EHHHHHHCCCSSEEEEECTTCSCB--GGGSCSCCCEEEEEEC--CTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHH
T ss_pred CHHHHHhhcCcCceEeechhhhCc--hhhccccCCcEEEEEC--CCCCCCHHHHHHHHHCCCEEecCCCCceeHHHHHHH
Confidence 45555543 22456666665422 2233333456889998 889998653 22578999999999887777
Q ss_pred HHHHHHHHhC
Q psy14698 195 LCSAFEEAWG 204 (206)
Q Consensus 195 i~~~~E~~~g 204 (206)
.++++-..||
T Consensus 231 als~l~~~~G 240 (251)
T 4e8b_A 231 AITALQVRFG 240 (251)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHHc
Confidence 7777776765
No 13
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=36.51 E-value=24 Score=22.03 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhCCC
Q psy14698 192 CTKLCSAFEEAWGVT 206 (206)
Q Consensus 192 ~~ri~~~~E~~~gi~ 206 (206)
++.++.++|+.||+|
T Consensus 18 ~~eLvk~leekfGVs 32 (40)
T 1dd4_C 18 LAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 468899999999986
No 14
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=35.42 E-value=8.5 Score=33.65 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=39.4
Q ss_pred CCeEEEEeccCCcccCC---CccCCCCCCeEEEECccccCCCC----CCCcceeEEecCCCCCHH-HHHHHHHHHHHH
Q psy14698 132 GVRKIGTSFSSSKLTKP---ADLVPADEPIVIVIGAMAHGQVD----TDYTEGNISISNFPLSAA-LTCTKLCSAFEE 201 (206)
Q Consensus 132 ~~~~i~ls~~g~~~v~~---~~~~~~~~~~~~~IGafp~Gd~~----~~~~~~~isIs~~~Lsa~-~v~~ri~~~~E~ 201 (206)
++++|.||+.|+ ..+- .++.. .+.++|+-|-+ .| ++ +.++++.|||++|-||.= ..+.-++.|.-+
T Consensus 106 ~~~vI~lsP~G~-~f~Q~~a~~La~-~~~liliCGrY-EG-iDeRvie~~vdeEiSIGDyVLsGGElaAmvliDav~R 179 (276)
T 4h3z_A 106 GARVVMMSPQGA-TLNHDKVMRFAA-EPGLILLCGRY-EA-IDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVR 179 (276)
T ss_dssp SCEEEEEEEEEE-ECCHHHHHHHHT-SSEEEEECCCS-SE-ECHHHHHHHCCEEEESSSSCCSCSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCC-eeehHHHHHhhc-cCCEEEEeccc-cc-hhHHHHhccCCeEEEecCEEeeCccHHHHHHHHHHHH
Confidence 357899999997 3221 12332 34555555544 23 12 235889999999999973 444445555433
No 15
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=33.65 E-value=70 Score=24.10 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=43.4
Q ss_pred CcceEEEEecCCEE---EEEcCCCCCCCChhHHHHHHHHHhhhCce----ecCCCCccceEEEec
Q psy14698 66 GLLQVYIHTEKNVL---IEVNPQTRIPRTFKRFAGLMVQLLHKFSV----RASDSNIKLLKVIKN 123 (206)
Q Consensus 66 G~L~VyIhT~~~~l---I~V~P~~RiPRty~rF~gLM~qLL~~~~V----~~~~~~~~Llkv~~~ 123 (206)
..|+-|.++..+.. |.|..+++.=-+|+.-..||-+-|+.--| +..+|+ |+++..+
T Consensus 6 ~~lrcy~~~~~~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGD--LIrildd 68 (107)
T 1oey_J 6 NWLRVYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD--LVRLLSD 68 (107)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSC--EEECCSH
T ss_pred ceeeeEEecccCceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCC--EEEEcch
Confidence 37899999988875 67999999888999999999999996543 223444 6666554
No 16
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=31.86 E-value=20 Score=30.59 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=45.1
Q ss_pred EEeccccccccC---CCeEEEEeccCCcccC---CCccCCCCCCeEEEECccccCCCC----CCCcceeEEecCCCCCHH
Q psy14698 120 VIKNPITQHLPV---GVRKIGTSFSSSKLTK---PADLVPADEPIVIVIGAMAHGQVD----TDYTEGNISISNFPLSAA 189 (206)
Q Consensus 120 v~~~~l~~~lp~---~~~~i~ls~~g~~~v~---~~~~~~~~~~~~~~IGafp~Gd~~----~~~~~~~isIs~~~Lsa~ 189 (206)
+...|+.+-+.. ..++|.||+.|+ ..+ ..+++. .+.++|+-|-+- | ++ +.++++.+||.+|-||.-
T Consensus 65 m~~ePl~~al~~~~~~~~vI~lsP~G~-~f~Q~~a~eLa~-~~~lillCGrYE-G-iDeRv~~~~vdeEiSIGDyVLtGG 140 (233)
T 3ief_A 65 MRADVLAAALDSCPNDSPRLLMSPRGR-LLNQAYARSLAR-SSGVTLVCGRFE-G-VDERIIEARELEEVSIGDYILSGG 140 (233)
T ss_dssp ECHHHHHHHHTTSCCCSCEEEEEEEEE-ECCHHHHHHHTT-SSEEEEEECCSS-C-BBHHHHHHTTCEEEESSSSCCSCH
T ss_pred eeHHHHHHHHHHhhcCCCEEEECCCCC-ccCHHHHHHHHC-CCCEEEEecccc-c-HHHHHHHhhCceEeeeccEEeeCc
Confidence 333455544432 246899999997 322 112443 355677666552 2 22 236889999999999974
Q ss_pred -HHHHHHHHHHH
Q psy14698 190 -LTCTKLCSAFE 200 (206)
Q Consensus 190 -~v~~ri~~~~E 200 (206)
..+.-++.|.-
T Consensus 141 ElaAmv~iDAv~ 152 (233)
T 3ief_A 141 ETAALVLLDAIV 152 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 33334455543
No 17
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Probab=31.31 E-value=32 Score=29.71 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.7
Q ss_pred CeEEEEeccCCcccC---CCccCCCCCCeEEEECccccCCCC-CCCcceeEEecCCCCCHH-HHHHHHHHHHHH
Q psy14698 133 VRKIGTSFSSSKLTK---PADLVPADEPIVIVIGAMAHGQVD-TDYTEGNISISNFPLSAA-LTCTKLCSAFEE 201 (206)
Q Consensus 133 ~~~i~ls~~g~~~v~---~~~~~~~~~~~~~~IGafp~Gd~~-~~~~~~~isIs~~~Lsa~-~v~~ri~~~~E~ 201 (206)
.++|.||+.|+ ..+ ..+++. .+.++|+-|-+--=|=. .+++++.+||.+|-||.- ..+.-++.|.-+
T Consensus 84 ~~vI~lsP~G~-~f~Q~~a~eLa~-~~~lillCGrYEGiDeRv~e~vdeEiSIGDyVLtGGElaAmvliDAv~R 155 (257)
T 1oy5_A 84 PFVLITEPWGE-KLNQKLVNELSK-KERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVIDAVSR 155 (257)
T ss_dssp CEEEEECTTBC-CCCHHHHHHHHT-CSEEEEEECBTTCBCGGGGGGCCEECCBCSSCCSBSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCC-cCCHHHHHHHhC-CCCEEEEeccccchhHHHHhhcceEeecccEEecCccHHHHHHHHHHHH
Confidence 36899999998 322 111333 35567766655321211 127899999999999973 334444555433
No 18
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} PDB: 4ig6_A*
Probab=29.95 E-value=15 Score=31.66 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=38.5
Q ss_pred CeEEEEeccCCcccC---CCccCCCCCCeEEEECccccCCCC----CCCcceeEEecCCCCCHH-HHHHHHHHHH
Q psy14698 133 VRKIGTSFSSSKLTK---PADLVPADEPIVIVIGAMAHGQVD----TDYTEGNISISNFPLSAA-LTCTKLCSAF 199 (206)
Q Consensus 133 ~~~i~ls~~g~~~v~---~~~~~~~~~~~~~~IGafp~Gd~~----~~~~~~~isIs~~~Lsa~-~v~~ri~~~~ 199 (206)
.++|.||+.|+ ..+ ..+++. .+.++|+-|-+- | ++ +.++++.|||.+|-||.- ..+.-++.|.
T Consensus 102 ~~vI~lsP~G~-~f~Q~~a~eLa~-~~~lillCGrYE-G-iDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv 172 (253)
T 3knu_A 102 TKLMFTSPRGV-SFTQDIARQTMN-FDNITLLCGRFE-G-IDERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTC 172 (253)
T ss_dssp CEEEEEEEEEE-ECCHHHHHHHHT-CSEEEEEECCTT-C-BCHHHHHHHTCEEEESSSSCCSSSHHHHHHHHHHH
T ss_pred CcEEEECCCCC-ccCHHHHHHHhC-CCCEEEEecccc-c-HHHHHHHhhCceEeeeccEEeeCchHHHHHHHHHH
Confidence 47899999997 322 112433 355667666552 2 22 225889999999999973 3333344443
No 19
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A*
Probab=28.70 E-value=15 Score=32.04 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=38.7
Q ss_pred CeEEEEeccCCcccC---CCccCCCCCCeEEEECccccCCCC----CCCcceeEEecCCCCCHH-HHHHHHHHHHH
Q psy14698 133 VRKIGTSFSSSKLTK---PADLVPADEPIVIVIGAMAHGQVD----TDYTEGNISISNFPLSAA-LTCTKLCSAFE 200 (206)
Q Consensus 133 ~~~i~ls~~g~~~v~---~~~~~~~~~~~~~~IGafp~Gd~~----~~~~~~~isIs~~~Lsa~-~v~~ri~~~~E 200 (206)
.++|.||+.|+ ..+ ..+++. .+.++|+-|-+ .| ++ +.++++.|||.+|-||.- ..+.-++.|.-
T Consensus 102 ~~vI~lsP~G~-~f~Q~~a~eLa~-~~~lillCGrY-EG-iDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~ 173 (274)
T 1ual_A 102 AKVIYLSPQGR-KLDQGGVTELAQ-NQKLILVCGRY-EG-IDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVA 173 (274)
T ss_dssp CEEEEEEEEEE-ECCHHHHHHHTT-CSEEEEECCCT-TC-CCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHH
T ss_pred CeEEEECCCCC-cCCHHHHHHHHC-CCCEEEEeccc-cc-hHHHHHhhcCcEEEecccEEecCccHHHHHHHHHHH
Confidence 37899999997 322 112443 34555555544 23 22 235889999999999973 44444555543
No 20
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=26.67 E-value=40 Score=29.26 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=37.8
Q ss_pred CeEEEEeccCCcccC---CCccCCCCCCeEEEECccccCCCC----CCCcceeEEecCCCCCHH-HHHHHHHHHH
Q psy14698 133 VRKIGTSFSSSKLTK---PADLVPADEPIVIVIGAMAHGQVD----TDYTEGNISISNFPLSAA-LTCTKLCSAF 199 (206)
Q Consensus 133 ~~~i~ls~~g~~~v~---~~~~~~~~~~~~~~IGafp~Gd~~----~~~~~~~isIs~~~Lsa~-~v~~ri~~~~ 199 (206)
+++|.||+.|+ ..+ ..+++. .+.++|+-|-+ .| ++ +.++++.|||.+|-||.- ..+.-++.|.
T Consensus 104 ~~vI~lsP~G~-~f~Q~~a~eLa~-~~~lillCGrY-EG-iDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv 174 (269)
T 3ky7_A 104 ARVILMCPQGE-PFSHQKAVELSK-ADHIVFICGHY-EG-YDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAI 174 (269)
T ss_dssp SEEEEEEEEEE-ECCHHHHHHHTT-CSEEEEECCCC-SC-BCHHHHHHTCCEEEESSSSCCSCSHHHHHHHHHHH
T ss_pred CcEEEECCCCC-ccCHHHHHHHHC-CCCEEEEeccc-cc-HHHHHHHhhCcEEeeeccEEeeCchHHHHHHHHHH
Confidence 47899999997 322 112443 34555555544 33 22 236889999999999973 3333344443
No 21
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=25.38 E-value=44 Score=27.28 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=30.9
Q ss_pred eEEEeccccccccCCCeEEEEeccCCcccCCCccCCCCCCeEEEECcccc
Q psy14698 118 LKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAH 167 (206)
Q Consensus 118 lkv~~~~l~~~lp~~~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~ 167 (206)
+.+...+..+++|.. .+|-||.+++.. ++++- ..-++||||+=.
T Consensus 87 ~~~~~~~~~~~f~~~-~iVYLtpDs~~~--L~~~~---~~~vYIIGGiVD 130 (197)
T 4fmw_A 87 IHIKPEHYSELIKKE-DLIYLTSDSPNI--LKELD---ESKAYVIGGLVD 130 (197)
T ss_dssp CEECSSCHHHHSCGG-GEEEECTTCSCB--CCSCC---TTSEEEEECCCC
T ss_pred eeecCccHHHhCCcc-cEEEECCCchhh--hhccC---CCCEEEEEEEEe
Confidence 566667888888764 588899998733 44542 345899999853
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.21 E-value=44 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=25.7
Q ss_pred CcceEEEEecCCEE---EE-EcCCCCCCCChhHHHHHHHHHhhhCceecC
Q psy14698 66 GLLQVYIHTEKNVL---IE-VNPQTRIPRTFKRFAGLMVQLLHKFSVRAS 111 (206)
Q Consensus 66 G~L~VyIhT~~~~l---I~-V~P~~RiPRty~rF~gLM~qLL~~~~V~~~ 111 (206)
|.++|+|+|.+|+- ++ |+|+. |...+...+++. -.|+++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~----tv~~lK~~i~~~---~gip~~ 43 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLT----KVEELRRKIQEL---FHVEPG 43 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTC----BHHHHHHHHHHH---HCCCGG
T ss_pred CcEEEEEEECCCCEEEEEeccCCCC----CHHHHHHHHHHH---HCcChh
Confidence 56899999998864 56 77764 556666666653 346654
No 23
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus}
Probab=23.60 E-value=53 Score=28.17 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=38.6
Q ss_pred CCeEEEEeccCCcccC---CCccCCCCCCeEEEECccccCCC---CC----CCcceeEEecCCCCCHH-HHHHHHHHHH
Q psy14698 132 GVRKIGTSFSSSKLTK---PADLVPADEPIVIVIGAMAHGQV---DT----DYTEGNISISNFPLSAA-LTCTKLCSAF 199 (206)
Q Consensus 132 ~~~~i~ls~~g~~~v~---~~~~~~~~~~~~~~IGafp~Gd~---~~----~~~~~~isIs~~~Lsa~-~v~~ri~~~~ 199 (206)
.+++|.||+.|+ ..+ ..+++. .+.++|+-|-+ .|=. .+ .++++.|||.+|-||.= ..+.-++.|.
T Consensus 81 ~~~vI~lsP~G~-~f~Q~~a~eLa~-~~~lillCGrY-EGiDeRv~e~~~~~~vdeEiSIGDyVLtGGElaAmvliDAv 156 (246)
T 3quv_A 81 ETLLVVPTPAGY-PFTQETAWQWST-EDHLVIACGRY-EGIDQRVADDAATRMRVREVSIGDYVLNGGEAAALVIIEAV 156 (246)
T ss_dssp TCEEEEEEEEEE-ECCHHHHHHHTT-CSEEEEECCBT-TCBCHHHHHHHTTTSEEEEEESSSSCCSBSHHHHHHHHHHH
T ss_pred CCcEEEECCCCC-ccCHHHHHHHhC-CCCEEEEeccc-cchhHHHHhccccccceEEEeeccEEeeCchHHHHHHHHHH
Confidence 347899999997 322 112443 34555555544 3311 13 47899999999999973 3333344443
No 24
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=22.76 E-value=66 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHhhhCceecCCCC
Q psy14698 91 TFKRFAGLMVQLLHKFSVRASDSN 114 (206)
Q Consensus 91 ty~rF~gLM~qLL~~~~V~~~~~~ 114 (206)
-|||=..||+||=..|-|.|.++.
T Consensus 37 GYnRAArlid~lE~~GiVgp~~gs 60 (73)
T 2ve8_A 37 GYNRAARMIEAMEMAGVVTPMNTN 60 (73)
T ss_dssp CHHHHHHHHHHHHHTTSBCCCCTT
T ss_pred ChHHHHHHHHHHHHCCcCCcccCC
Confidence 599999999999999999886543
No 25
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.93 E-value=54 Score=23.07 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.6
Q ss_pred cceEEEEecCCEEEEEcCCCC
Q psy14698 67 LLQVYIHTEKNVLIEVNPQTR 87 (206)
Q Consensus 67 ~L~VyIhT~~~~lI~V~P~~R 87 (206)
-.=.-++|.||++++-||.+|
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk 40 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTR 40 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTT
T ss_pred CCcEEEECCCCCEEEecCccc
Confidence 344667899999999999987
No 26
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=20.08 E-value=48 Score=23.33 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=15.2
Q ss_pred EEEEecCCEEEEEcCCC
Q psy14698 70 VYIHTEKNVLIEVNPQT 86 (206)
Q Consensus 70 VyIhT~~~~lI~V~P~~ 86 (206)
|++.+.+|++++|||.+
T Consensus 12 i~v~d~~G~i~yvn~~~ 28 (111)
T 2vlg_A 12 HAVLASNGRIIYISANS 28 (111)
T ss_dssp EEEECTTSBEEEECTTH
T ss_pred EEEEcCCCeEEEEChHH
Confidence 88999999999999963
Done!