RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14698
(206 letters)
>gnl|CDD|217628 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members of this
family are essential for 40S ribosomal biogenesis. The
structure of EMG1 has revealed that it is a novel member
of the superfamily of alpha/beta knot fold
methyltransferases.
Length = 200
Score = 257 bits (658), Expect = 6e-88
Identities = 96/187 (51%), Positives = 122/187 (65%), Gaps = 8/187 (4%)
Query: 20 KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
K +ELL+ DDH +KK ++ RPDIVHQCLLML+DSPLN+AGLL+VYIHT VL
Sbjct: 16 KPGYELLDSDDHYAAMKKLKKKEKRGRPDIVHQCLLMLLDSPLNKAGLLRVYIHTRDGVL 75
Query: 80 IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
IEV+P+TR+PR + RF GLM QLL K V A LLKV+KNP+T LP G +KI S
Sbjct: 76 IEVSPETRVPRNYNRFVGLMEQLLKKGRVPAEGGE-PLLKVVKNPLTDLLPEGAKKILLS 134
Query: 140 FSSSKLTKPADLVPA--DEPIVIVIGAMAHGQ--VDTDYTE--GNISISNFPLSAALTCT 193
K P +LV ++P+ VIGA HG + DY + + SISN+PLSA C+
Sbjct: 135 EKGEK-VSPKELVSELLNKPVAFVIGAFPHGDFSDEVDYKKADESYSISNYPLSAWTVCS 193
Query: 194 KLCSAFE 200
++C AFE
Sbjct: 194 RICHAFE 200
>gnl|CDD|224670 COG1756, Mra1, Uncharacterized conserved protein [Function
unknown].
Length = 223
Score = 184 bits (468), Expect = 7e-59
Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 25 LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
L + H + K + RE RPDIVHQCLL L+DSPLN+ G L+VYIHT + +IEVNP
Sbjct: 41 LDSSYHHTAMKKLEDRERRG-RPDIVHQCLLTLLDSPLNKEGKLRVYIHTRNDYVIEVNP 99
Query: 85 QTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLP-VGVRKIGTSFS-S 142
+TR+PR + RF GLM QLL K + S+ LL+V KNP+T LP I
Sbjct: 100 ETRLPRNYNRFIGLMEQLLKKGRIP-SNGGETLLEVEKNPLTDLLPENNKVTI--LLHEK 156
Query: 143 SKLTKPADLVPADEP-IVIVIGAMAHG--QVDTDYTEGNISISNFPLSAALTCTKLCSAF 199
+L P +L+ I ++IG HG + +T++ SI + PLSA C+K+ A+
Sbjct: 157 GELIPPKELISLLLKGIAVIIGGFPHGDFREETEFVAEKYSIYDEPLSAWSVCSKIVYAY 216
Query: 200 EEAWG 204
E A G
Sbjct: 217 ERALG 221
>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional.
Length = 222
Score = 128 bits (324), Expect = 4e-37
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 46 RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
RPDIVH LL+ +DSPLN+ G L+VYIHT + +I VNP+TR+P+ + RF GLM QLL +
Sbjct: 60 RPDIVHISLLVALDSPLNKEGKLRVYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKE 119
Query: 106 FSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS----FSSS-KLTKPADLVPADEPIVI 160
V + + L I+N + L + +IG S +L KP +L +E I +
Sbjct: 120 GRVPPNG---EPLLEIENKSLEEL---LEEIGPDRIILLSEKGELVKPKELGKENENIAV 173
Query: 161 VIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLCSAFEEAWG 204
IG HG + SI PL+A ++ +A+E G
Sbjct: 174 GIGGFPHGDFSEKVLELAKKKYSIYGEPLTAWTVVCRVIAAYERLLG 220
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS.
Length = 134
Score = 28.2 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 66 GLLQVYIHTEKNVLIEVNPQT 86
GL+ VYI K VL+EVN +T
Sbjct: 4 GLVAVYIDGNKGVLVEVNCET 24
>gnl|CDD|240618 cd12219, UBL_TBK1_like, Ubiquitin-Like Domain Of Human Tbk1 and
similar proteins. This family contains ubiquitin-like
domain (UBL) found in TANK-binding kinase 1 (TBK1) and
similar proteins. TBK1 regulates factors such as IRF3
and IRF7, promoting antiviral activity in the
interferon signaling pathways. In addition to the
central UBL, these proteins have an N-terminal kinase
domain and a C-terminal elongated helical domain. The
ubiquitin-like domain acts as a protein-protein
interaction domain, and has been implicated in
regulating kinase activity, which modulates
interactions in the IFN pathway.
Length = 89
Score = 26.1 bits (58), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 62 LNRAGLLQVYIHTEK---NVLIEVNPQTRIP 89
+N+A +VYIH E+ N V QT +P
Sbjct: 20 VNQATSHKVYIHPEETLVNFQELVFEQTEVP 50
>gnl|CDD|216792 pfam01927, DUF82, Protein of unknown function DUF82. This
prokaryotic protein family has no known function. The
protein contains four conserved cysteines that may be
involved in metal binding or disulphide bridges.
Length = 146
Score = 26.4 bits (59), Expect = 8.3
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 62 LNRAGLLQVYIHTEKNV---LIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLL 118
L R L + + L EV +RF GL + L +FS R N L
Sbjct: 53 LKRRLLTGGVLVRSLDPEEQLREV---------IERF-GLKLSLKPEFS-RCLKCNGPLE 101
Query: 119 KVIKNPITQHLPVGVRKIGTSFS 141
V K + +P V + F
Sbjct: 102 PVSKEEVAGRVPPYVYERYDEFW 124
>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 26.6 bits (59), Expect = 8.4
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 53 CLLMLMDSPLNRAGLLQVYIH--TEKNVLIEVNPQTRIPRTFKR 94
C ++++D PL L + + T+ V++ V+P+T++ R R
Sbjct: 107 CKVIVLDIPL----LFETKMDKWTKPVVVVWVDPETQLERLMAR 146
>gnl|CDD|222891 PHA02585, 16, small terminase protein; Provisional.
Length = 161
Score = 26.3 bits (58), Expect = 9.2
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 23/67 (34%)
Query: 56 MLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNI 115
MLMD ++ + KN + PR + FA LM Q+ +++N
Sbjct: 61 MLMD-------AAKIALENAKN--------SESPRHVEVFATLMGQM--------TNTNK 97
Query: 116 KLLKVIK 122
++LK+ K
Sbjct: 98 EILKIHK 104
>gnl|CDD|222991 PHA03119, PHA03119, helicase-primase primase subunit; Provisional.
Length = 1085
Score = 26.8 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 31 HGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
L+ + G S P+ L L R GL +Y H E+ VL
Sbjct: 162 TKQLVPRLGCTTDSANPE---TSLKTLSKKMNGRRGLTSLYAHYERAVL 207
>gnl|CDD|234876 PRK00960, PRK00960, seryl-tRNA synthetase; Provisional.
Length = 517
Score = 26.9 bits (60), Expect = 9.5
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 108 VRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAH 167
VRA ++ ++L K + + + +G+R I ++ +PAD VI + +
Sbjct: 70 VRAHEALLRLRKPLAEKLGRKYRIGIRGI-------EIDNYVITIPADGEKVIELEGLKV 122
Query: 168 GQ--VDTDYTEGNISISNFPLSAA 189
V+ + +G I + + +
Sbjct: 123 PPCVVEIEGEKGTIILIFKDVGES 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,325,978
Number of extensions: 936273
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 13
Length of query: 206
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 114
Effective length of database: 6,857,034
Effective search space: 781701876
Effective search space used: 781701876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)