RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14698
         (206 letters)



>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 227

 Score =  249 bits (638), Expect = 2e-85
 Identities = 101/190 (53%), Positives = 130/190 (68%), Gaps = 4/190 (2%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
            + + LLNCDDH  LLKK GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + +L
Sbjct: 38  GDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGIL 97

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           IEVNP  RIPRTFKRF+GLMVQLLHK S+R+ +S  KLLKVIKNPIT HLP   RK+  S
Sbjct: 98  IEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLS 157

Query: 140 FSSSKLT--KPADLVPADEPIVIVIGAMAHG--QVDTDYTEGNISISNFPLSAALTCTKL 195
           F +  +      + +  DE I + +GAMA G      +Y +  + +SN+PLSA++ C+K 
Sbjct: 158 FDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKF 217

Query: 196 CSAFEEAWGV 205
           C   E+AW +
Sbjct: 218 CHGAEDAWNI 227


>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1
           {Methanococcus jannaschii [TaxId: 2190]}
          Length = 204

 Score =  234 bits (598), Expect = 2e-79
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 14/186 (7%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
              +++L+ + H   ++K   +    RPDI+H  LL ++DSP+N    L +YIHT  + +
Sbjct: 27  VYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKV 86

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           +++NP+TR+PR + RF G+M ++L            K L+ + N I         KI   
Sbjct: 87  LKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEINAK------KIAIM 140

Query: 140 FSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTK 194
             + KLT P  L    E    +IG   +G++  +  +       ISI N  L A   C  
Sbjct: 141 TKTGKLTHPKLL---KEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGI 197

Query: 195 LCSAFE 200
           +C +  
Sbjct: 198 ICYSLS 203


>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),
           dimerisation domain {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 29.4 bits (66), Expect = 0.069
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 66  GLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPI 125
           G+++  I     +++EVN QT        F         K    A    I  ++V+K   
Sbjct: 5   GVIKTKIDGNYGIILEVNCQTDFVAKDAGF----QAFADKVLDAAVAGKITDVEVLKAQF 60

Query: 126 TQHLPVGVRKIG 137
            +     V KIG
Sbjct: 61  EEERVALVAKIG 72


>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 25.8 bits (57), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 152 VPADEPIVIVIGAMAHGQVDTDYTEG---NISISNFPLS--AAL 190
           +   + +++V+GA    +V  +  E    NISI   P S  AAL
Sbjct: 93  IKRADKVLVVVGA---EKVPPEVYELCDLNISIGTQPHSEVAAL 133


>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase {Legionella
           pneumophila [TaxId: 446]}
          Length = 250

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 148 PADLVPADEPIVIVIGAMAHGQVDTDYTEGNISI 181
           P D+   +  +      M       DYTE    +
Sbjct: 54  PPDMELLEPVVKFEFIRMPDSTGFGDYTESGQVV 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 757,326
Number of extensions: 32972
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 7
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)