BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14699
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/176 (63%), Positives = 136/176 (77%), Gaps = 12/176 (6%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK +HNKVNIVPVIAKAD LT KE +RLKK+++DEI+++ I IY LPD +SDEDED+KEQ
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQ 227
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDL 120
R LK ++PF+V G+N ++E G KVRGR YPWGVVEVENPEH DF KLRTML+THMQDL
Sbjct: 228 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDL 287
Query: 121 QEVTQEIHYENYRSERLVKGVPVPKRTVSLTEDSKPTANNLEKDRILQEKEAELQR 176
QEVTQ++HYEN+RSERL +G K ++ KD+IL EKEAEL+R
Sbjct: 288 QEVTQDLHYENFRSERLKRG------------GRKVENEDMNKDQILLEKEAELRR 331
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 213 bits (543), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 118/137 (86%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK +HNKVNIVPVIAKAD LT KE +RLKK+++DEI+++ I IY LPD +SDEDED+KEQ
Sbjct: 136 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHSIKIYHLPDAESDEDEDFKEQ 195
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDL 120
R LK ++PF+V G+N ++E G KVRGR YPWGVVEVENPEH DF KLRTML+THMQDL
Sbjct: 196 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDL 255
Query: 121 QEVTQEIHYENYRSERL 137
QEVTQ++HYEN+RSERL
Sbjct: 256 QEVTQDLHYENFRSERL 272
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/139 (69%), Positives = 117/139 (84%)
Query: 2 KQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQV 61
K +HNKVNIVPVIAKAD LT KE +RLKK+++DEI+++ I IY LPD +SDEDED+KEQ
Sbjct: 150 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQT 209
Query: 62 RQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQ 121
R LK ++PF+V G+N ++E G KVRGR YPWGVVEVENPEH DF KLRT L+TH QDLQ
Sbjct: 210 RLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTXLITHXQDLQ 269
Query: 122 EVTQEIHYENYRSERLVKG 140
EVTQ++HYEN+RSERL +G
Sbjct: 270 EVTQDLHYENFRSERLKRG 288
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/139 (69%), Positives = 117/139 (84%)
Query: 2 KQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQV 61
K +HNKVNIVPVIAKAD LT KE +RLKK+++DEI+++ I IY LPD +SDEDED+KEQ
Sbjct: 169 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQT 228
Query: 62 RQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQ 121
R LK ++PF+V G+N ++E G KVRGR YPWGVVEVENPEH DF KLRT L+TH QDLQ
Sbjct: 229 RLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTXLITHXQDLQ 288
Query: 122 EVTQEIHYENYRSERLVKG 140
EVTQ++HYEN+RSERL +G
Sbjct: 289 EVTQDLHYENFRSERLKRG 307
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 108/139 (77%), Gaps = 4/139 (2%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+LH KVNI+P+IAKAD LT +E Q+ KK++M EI+++ I IY P+ D DE+ +
Sbjct: 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD---DEEENKL 217
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
V+++K+ +P AV G+NT++EV G +VRGRQYPWGV EVEN EHCDFT LR ML+ THMQD
Sbjct: 218 VKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQD 277
Query: 120 LQEVTQEIHYENYRSERLV 138
L++VT +HYENYRS +L
Sbjct: 278 LKDVTNNVHYENYRSRKLA 296
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 108/139 (77%), Gaps = 4/139 (2%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+LH KVNI+P+IAKAD LT +E Q+ KK++M EI+++ I IY P+ D DE+ +
Sbjct: 138 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD---DEEENKL 194
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
V+++K+ +P AV G+NT++EV G +VRGRQYPWGV EVEN EHCDFT LR ML+ THMQD
Sbjct: 195 VKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQD 254
Query: 120 LQEVTQEIHYENYRSERLV 138
L++VT +HYENYRS +L
Sbjct: 255 LKDVTNNVHYENYRSRKLA 273
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 108/139 (77%), Gaps = 4/139 (2%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+LH KVNI+P+IAKAD LT +E Q+ KK++M EI+++ I IY P+ D DE+ +
Sbjct: 133 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETD---DEEENKL 189
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
V+++K+ +P AV G+NT++EV G +VRGRQYPWGV EVEN EHCDFT LR ML+ THMQD
Sbjct: 190 VKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQD 249
Query: 120 LQEVTQEIHYENYRSERLV 138
L++VT +HYENYRS +L
Sbjct: 250 LKDVTNNVHYENYRSRKLA 268
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 4/139 (2%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSD-EDEDYKE 59
MK L VNI+PVIAKAD +T +E K++V E++ NGI YP + D D ED+ +
Sbjct: 134 MKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDEDLEDKTEND 193
Query: 60 QVRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQ 118
++RQ E++PFAV G++ +V G +V GR+ PWG++EVEN HC+F LR ++ TH+Q
Sbjct: 194 KIRQ--ESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLNHCEFALLRDFVIRTHLQ 251
Query: 119 DLQEVTQEIHYENYRSERL 137
DL+EVT IHYE YR++RL
Sbjct: 252 DLKEVTHNIHYETYRAKRL 270
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 11/181 (6%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+L +KVNI+P+IAKAD +++ E+ + K K+ E+ NG+ IY P +DE E
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT----DDESVAEI 225
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
+ +PFAV G+ L++G +R RQYPWG V+VEN HCDF KLR ML+ +M+D
Sbjct: 226 NGTMNAHLPFAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMED 285
Query: 120 LQEVTQEIHYENYRSERL----VKGVPVPKRTVSLTEDSKPTANNLEKDRILQEKEAELQ 175
L+E T HYE YR +L K + SL E + N + LQ+KE E++
Sbjct: 286 LREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGE--LQKKEEEMR 343
Query: 176 R 176
+
Sbjct: 344 Q 344
>pdb|1G5H|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 24 EIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKE-----AVPFAVCGANTV 78
E++++ + +++E+ +NGI+++P E + QL +V F+V T
Sbjct: 352 ELRQVCQGLLNELLENGISVWP------GYSETVHSSLEQLHSKYDEXSVLFSVLVTETT 405
Query: 79 LEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEI 127
LE G ++R R + E +KLR LV ++ V +
Sbjct: 406 LENGLIQLRSR-------DTTXKEXXHISKLRDFLVKYLASASNVAAAL 447
>pdb|1G5I|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 24 EIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKE-----AVPFAVCGANTV 78
E++++ + +++E+ +NGI+++P E + QL +V F+V T
Sbjct: 352 ELRQVCQGLLNELLENGISVWP------GYSETVHSSLEQLHSKYDEMSVLFSVLVTETT 405
Query: 79 LEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEI 127
LE G ++R R + E +KLR LV ++ V +
Sbjct: 406 LENGLIQLRSR-------DTTMKEMMHISKLRDFLVKYLASASNVAAAL 447
>pdb|2JXM|B Chain B, Ensemble Of Twenty Structures Of The Prochlorothrix
Hollandica Plastocyanin- Cytochrome F Complex
Length = 249
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 6 NKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSD-------EDEDYK 58
+ +N+ V+ + +R+ +++M+E+ + P + D + EDY+
Sbjct: 67 SGLNVGAVLMLPEGFKLAPPERVDEELMEEVGDFYYLVTPYSETDENILLAGPLPGEDYQ 126
Query: 59 EQVRQLKEAVPFAVCG---ANTVLEVGGNKVRGRQYPWG 94
E + + P G + +GGN+ RG+ YP G
Sbjct: 127 EMIFPILSPNPATDAGVYFGKYSIHLGGNRGRGQVYPTG 165
>pdb|1CI3|M Chain M, Cytochrome F From The B6f Complex Of Phormidium Laminosum
Length = 249
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 37 KQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVV 96
KQN + + PLP DE E+ V A +V + +G N+ RG+ YP G
Sbjct: 110 KQNIVLVGPLP---GDEYEEIVFPVLSPNPATNKSVAFGKYSIHLGANRGRGQIYPTG-- 164
Query: 97 EVENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPV-PKRTVSLTED 153
E + + ++T + + + E+ +V +P P+ VS E+
Sbjct: 165 --EKSNNAVYNASAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEE 220
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed
With Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed
With Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed
With Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed
With Fad From Bacillus Anthracis
Length = 597
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 46 LPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLEVGG 83
LP+ + E ++ VR LKEA + GA+ E GG
Sbjct: 53 LPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGG 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,082,478
Number of Sequences: 62578
Number of extensions: 198348
Number of successful extensions: 439
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 28
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)