Query psy14699
Match_columns 195
No_of_seqs 195 out of 662
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:22:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qag_B Septin-6, protein NEDD5 100.0 3.7E-51 1.3E-55 375.1 5.7 185 1-189 170-380 (427)
2 3sop_A Neuronal-specific septi 100.0 6.1E-49 2.1E-53 338.6 12.9 136 1-137 134-270 (270)
3 2qag_C Septin-7; cell cycle, c 100.0 5.7E-45 1.9E-49 332.5 9.4 185 1-188 161-375 (418)
4 2qag_A Septin-2, protein NEDD5 100.0 2.8E-45 9.5E-50 326.5 6.9 178 2-191 169-346 (361)
5 2qnr_A Septin-2, protein NEDD5 100.0 1.3E-42 4.5E-47 302.2 11.3 142 2-143 150-291 (301)
6 3t5d_A Septin-7; GTP-binding p 100.0 3.5E-39 1.2E-43 274.4 8.8 135 2-139 139-274 (274)
7 1h65_A Chloroplast outer envel 98.1 1E-06 3.4E-11 73.9 2.9 72 8-95 155-233 (270)
8 1wf3_A GTP-binding protein; GT 97.0 0.00032 1.1E-08 60.3 2.8 55 62-125 203-258 (301)
9 1nrj_B SR-beta, signal recogni 85.1 0.076 2.6E-06 41.5 -2.1 79 5-84 118-201 (218)
10 4dhe_A Probable GTP-binding pr 78.6 1.9 6.6E-05 33.3 3.9 33 6-38 143-175 (223)
11 3pqc_A Probable GTP-binding pr 74.5 2.1 7.1E-05 31.9 2.9 40 7-46 133-173 (195)
12 3nmd_A CGMP dependent protein 71.8 6.5 0.00022 27.5 4.7 32 160-191 21-52 (72)
13 1svi_A GTP-binding protein YSX 67.5 3 0.0001 31.3 2.5 39 7-45 134-173 (195)
14 3sjy_A Translation initiation 59.9 6.9 0.00024 34.1 3.7 34 8-41 130-163 (403)
15 3s9g_A Protein hexim1; cyclin 59.0 21 0.00071 26.4 5.5 16 127-142 17-32 (104)
16 3nmd_A CGMP dependent protein 53.7 8.6 0.00029 26.8 2.6 26 160-185 42-67 (72)
17 1wb1_A Translation elongation 49.2 12 0.00041 33.8 3.5 33 7-39 125-157 (482)
18 2yv5_A YJEQ protein; hydrolase 47.6 40 0.0014 28.2 6.3 40 7-47 110-149 (302)
19 3ial_A Prolyl-tRNA synthetase; 47.3 44 0.0015 30.9 7.1 124 7-135 301-435 (518)
20 3plt_A Sphingolipid long chain 46.1 36 0.0012 28.6 5.7 43 90-135 53-95 (234)
21 1nj1_A PROR, proline-tRNA synt 45.2 78 0.0027 28.8 8.3 64 7-78 316-380 (501)
22 1hc7_A Prolyl-tRNA synthetase; 42.0 1.2E+02 0.0042 27.3 9.1 77 7-90 289-366 (477)
23 3bma_A D-alanyl-lipoteichoic a 41.6 16 0.00054 33.0 3.0 41 10-50 296-340 (407)
24 1zxa_A CGMP-dependent protein 39.4 20 0.00067 24.6 2.5 30 160-189 20-49 (67)
25 3r07_C Putative lipoate-protei 38.4 11 0.00039 26.7 1.3 39 86-124 9-66 (91)
26 2w6a_A ARF GTPase-activating p 37.1 39 0.0013 22.8 3.6 18 170-187 39-56 (63)
27 2qpt_A EH domain-containing pr 36.6 32 0.0011 31.7 4.3 28 7-34 218-245 (550)
28 2j69_A Bacterial dynamin-like 36.4 2.2E+02 0.0074 26.8 10.1 31 160-190 361-391 (695)
29 1zxa_A CGMP-dependent protein 35.5 57 0.002 22.2 4.4 32 158-189 25-56 (67)
30 1kk1_A EIF2gamma; initiation o 35.2 29 0.001 30.1 3.7 38 8-45 138-178 (410)
31 1v95_A Nuclear receptor coacti 34.7 19 0.00066 27.5 2.1 72 6-89 9-82 (130)
32 3twe_A Alpha4H; unknown functi 34.3 46 0.0016 18.5 3.1 19 172-190 8-26 (27)
33 1pui_A ENGB, probable GTP-bind 33.5 34 0.0012 25.7 3.4 33 8-40 138-170 (210)
34 1qf6_A THRRS, threonyl-tRNA sy 33.4 64 0.0022 30.3 5.9 71 7-90 541-612 (642)
35 2rcn_A Probable GTPase ENGC; Y 33.3 82 0.0028 27.5 6.3 39 7-46 160-198 (358)
36 3ikl_A DNA polymerase subunit 32.5 55 0.0019 29.9 5.1 65 23-90 361-427 (459)
37 2akf_A Coronin-1A; coiled coil 31.8 60 0.0021 18.9 3.4 20 170-189 4-23 (32)
38 3lxx_A GTPase IMAP family memb 31.4 26 0.00089 27.5 2.5 41 8-48 146-190 (239)
39 3h2y_A GTPase family protein; 31.2 63 0.0022 27.9 5.1 35 7-41 96-131 (368)
40 1use_A VAsp, vasodilator-stimu 30.6 53 0.0018 20.8 3.3 20 19-38 3-22 (45)
41 2qag_B Septin-6, protein NEDD5 30.5 11 0.00036 34.2 0.0 24 157-180 325-348 (427)
42 3llu_A RAS-related GTP-binding 30.0 51 0.0017 24.6 3.9 28 5-32 127-154 (196)
43 3o1l_A Formyltetrahydrofolate 29.7 76 0.0026 27.2 5.3 77 8-100 133-211 (302)
44 3r7w_A Gtpase1, GTP-binding pr 29.3 65 0.0022 26.7 4.7 42 5-46 113-161 (307)
45 2fh5_B SR-beta, signal recogni 29.0 31 0.0011 26.0 2.5 32 6-37 114-145 (214)
46 1zun_B Sulfate adenylate trans 29.0 45 0.0015 29.2 3.9 32 9-40 159-192 (434)
47 2c78_A Elongation factor TU-A; 28.6 61 0.0021 28.0 4.6 34 8-41 128-163 (405)
48 2l5g_B Putative uncharacterize 28.4 1.1E+02 0.0038 19.0 4.7 29 162-190 6-34 (42)
49 1nj8_A Proline-tRNA synthetase 27.9 2.6E+02 0.0088 24.9 8.7 64 7-79 284-348 (459)
50 2qag_C Septin-7; cell cycle, c 27.3 13 0.00045 33.2 0.0 28 156-183 320-347 (418)
51 1v54_G Cytochrome C oxidase po 26.5 15 0.00053 26.2 0.3 11 85-95 54-64 (85)
52 2h57_A ADP-ribosylation factor 26.0 11 0.00036 28.2 -0.8 16 6-21 125-140 (190)
53 1f60_A Elongation factor EEF1A 25.6 57 0.002 29.0 3.9 33 9-41 147-181 (458)
54 3ec1_A YQEH GTPase; atnos1, at 25.4 1E+02 0.0035 26.5 5.4 36 7-42 98-134 (369)
55 1s0u_A EIF-2-gamma, translatio 24.8 21 0.00073 31.0 0.9 38 8-45 136-176 (408)
56 1jny_A EF-1-alpha, elongation 24.5 62 0.0021 28.4 3.9 34 8-41 145-182 (435)
57 3ica_A Phenylalanyl-tRNA synth 24.2 17 0.00058 29.2 0.1 69 22-120 3-73 (213)
58 2ce2_X GTPase HRAS; signaling 24.0 31 0.0011 24.2 1.5 15 7-21 108-122 (166)
59 3ec1_A YQEH GTPase; atnos1, at 23.9 10 0.00035 33.0 -1.4 36 6-44 273-308 (369)
60 2y69_G Cytochrome C oxidase po 23.0 20 0.00067 26.3 0.3 11 85-95 66-76 (97)
61 2efe_B Small GTP-binding prote 22.6 47 0.0016 23.9 2.3 38 7-46 117-154 (181)
62 2l2l_A Transcriptional repress 22.4 1.5E+02 0.005 18.4 4.6 29 161-190 4-32 (43)
63 3n5l_A Binding protein compone 21.5 2.3E+02 0.0079 23.2 6.7 27 161-187 278-304 (310)
64 2qu8_A Putative nucleolar GTP- 21.3 30 0.001 26.8 1.0 16 7-22 142-157 (228)
65 3h2y_A GTPase family protein; 21.2 19 0.00066 31.2 -0.1 36 6-44 272-307 (368)
66 1u0l_A Probable GTPase ENGC; p 21.0 1.5E+02 0.005 24.5 5.4 19 7-25 115-133 (301)
67 1d2e_A Elongation factor TU (E 20.7 1.1E+02 0.0036 26.4 4.6 34 8-41 119-154 (397)
68 3bas_A Myosin heavy chain, str 20.5 1.5E+02 0.0052 20.6 4.6 29 160-188 9-37 (89)
No 1
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-51 Score=375.05 Aligned_cols=185 Identities=38% Similarity=0.621 Sum_probs=106.9
Q ss_pred CCccCCccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeee
Q psy14699 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLE 80 (195)
Q Consensus 1 Mk~L~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~ 80 (195)
|+.|+..+||||||+|+|+||++|+..++..|+++|..+||.||.|+.++ ++..+.+..++..+|||||||++.++
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d----~~~~~~~~~~~~~~PFavvgs~~~~~ 245 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD----ESVAEINGTMNAHLPFAVIGSTEELK 245 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---------CCSHHHHHTTC-CCBCCC------
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc----hhHHHHHhhhcCCCCeEEECCCCeee
Confidence 46788999999999999999999999999999999999999999998532 23334577889999999999999999
Q ss_pred eCCeeeeeccCCCeeeeecCCCCCchHHHHHHHH-hhHHHHHHHhHHHHHHhhHHHHHhcCCCCCCCCC-----------
Q psy14699 81 VGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQDLQEVTQEIHYENYRSERLVKGVPVPKRTV----------- 148 (195)
Q Consensus 81 ~~g~~vrgR~YpWG~veVen~~HsDF~~LR~~Li-thlqdLkd~T~~~~YE~yR~~~L~~~~~~~~~~~----------- 148 (195)
++|+.||||+||||+|+|+|++||||.+||++|| |||+||++.|+++|||+||+++|..++......+
T Consensus 246 ~~g~~vrgR~ypWG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 2qag_B 246 IGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYE 325 (427)
T ss_dssp --CCCC-----CCCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC------------------
T ss_pred eCCcEEEEecCCCceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999998764211110
Q ss_pred -------------cccCCCCccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy14699 149 -------------SLTEDSKPTANNLEKDRILQEKEAEL-QRMQEMIAKMQAQMQ 189 (195)
Q Consensus 149 -------------~~~~~~~~~~~~~e~~~~l~~ke~el-~r~~em~~~~q~q~~ 189 (195)
+..|...|+.++.+++..|++.|++| +++.+|..++++|.+
T Consensus 326 ~~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~ 380 (427)
T 2qag_B 326 AKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKK 380 (427)
T ss_dssp -------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888888888888 566666666776654
No 2
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=100.00 E-value=6.1e-49 Score=338.56 Aligned_cols=136 Identities=49% Similarity=0.865 Sum_probs=121.7
Q ss_pred CCccCCccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeee
Q psy14699 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLE 80 (195)
Q Consensus 1 Mk~L~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~ 80 (195)
|++|++++||||||+|||+||++|+..+|..|++.|..+||++|+||++++| +++..+.....++.+|||||||+..++
T Consensus 134 l~~L~~~~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~pfavv~s~~~~~ 212 (270)
T 3sop_A 134 MKHLSKVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDED-LEDKTENDKIRQESMPFAVVGSDKEYQ 212 (270)
T ss_dssp HHHHHTTSEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSSCSCC----CHHHHHHHHHHHTTCSEECCCCCCEEE
T ss_pred HHHHHhcCcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecceEEE
Confidence 4567778999999999999999999999999999999999999999876533 444444445556999999999999999
Q ss_pred eCCeeeeeccCCCeeeeecCCCCCchHHHHHHHH-hhHHHHHHHhHHHHHHhhHHHHH
Q psy14699 81 VGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQDLQEVTQEIHYENYRSERL 137 (195)
Q Consensus 81 ~~g~~vrgR~YpWG~veVen~~HsDF~~LR~~Li-thlqdLkd~T~~~~YE~yR~~~L 137 (195)
++|+.|+||+||||+|+|||++||||.+||++|| |||+||||+|+++|||+||+++|
T Consensus 213 ~~g~~~~~r~y~wg~~~v~n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 213 VNGKRVLGRKTPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp ETTEEEEEECCCC-CEESSCTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred eCCcEEEEeecCceEEEeCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 99999999999999999999986
No 3
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-45 Score=332.50 Aligned_cols=185 Identities=49% Similarity=0.823 Sum_probs=100.0
Q ss_pred CCccCCccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeee
Q psy14699 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLE 80 (195)
Q Consensus 1 Mk~L~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~ 80 (195)
|+.|+..+||||||+|+|++|+.|+..+|..|++.+..+||++|.||.++.++++ +....+...+|||||||+..++
T Consensus 161 lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~---~~~~~l~~~iPfavv~s~~~~~ 237 (418)
T 2qag_C 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN---KLVKKIKDRLPLAVVGSNTIIE 237 (418)
T ss_dssp HHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC--------------------CCEEECC------
T ss_pred HHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHH---HHHHHHHhhCCcceeecceeEe
Confidence 3567788999999999999999999999999999999999999999976533322 2466788999999999999999
Q ss_pred eCCeeeeeccCCCeeeeecCCCCCchHHHHHHHH-hhHHHHHHHhHHHHHHhhHHHHHhcC---CCCCCCC------C--
Q psy14699 81 VGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQDLQEVTQEIHYENYRSERLVKG---VPVPKRT------V-- 148 (195)
Q Consensus 81 ~~g~~vrgR~YpWG~veVen~~HsDF~~LR~~Li-thlqdLkd~T~~~~YE~yR~~~L~~~---~~~~~~~------~-- 148 (195)
.+|+.++||+||||+|+|+|+.||||..||++|| +||+||+++|+++|||+||+++|..+ +...... +
T Consensus 238 ~~g~~vr~R~y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~~~~~~~~~~~~~~~~~~~~ 317 (418)
T 2qag_C 238 VNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPL 317 (418)
T ss_dssp -------CEECSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC---------------------
T ss_pred cCCceeecccccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCccccccccccCCChH
Confidence 9999999999999999999999999999999999 99999999999999999999999987 3211110 0
Q ss_pred -----------------cccCCCCccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy14699 149 -----------------SLTEDSKPTANNLEKDRILQEKEAEL-QRMQEMIAKMQAQM 188 (195)
Q Consensus 149 -----------------~~~~~~~~~~~~~e~~~~l~~ke~el-~r~~em~~~~q~q~ 188 (195)
+..|..+|++++.+++.+|++.|++| +++.+|...+++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~ 375 (418)
T 2qag_C 318 AQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQH 375 (418)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888 66666665566553
No 4
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-45 Score=326.53 Aligned_cols=178 Identities=68% Similarity=1.037 Sum_probs=113.4
Q ss_pred CccCCccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeeee
Q psy14699 2 KQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLEV 81 (195)
Q Consensus 2 k~L~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~~ 81 (195)
+.|+..+|+|||++|+|+++..++..+|..+.+.+..+||++|.++..+.+.++.+......+...+|||||||+..++.
T Consensus 169 ~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~vv~s~~~~~~ 248 (361)
T 2qag_A 169 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEA 248 (361)
T ss_dssp HHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCSCEECCCSEEC--
T ss_pred HHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCCEeCCCCcccc
Confidence 56788999999999999999999999999999999999999999986554445667777888999999999999999999
Q ss_pred CCeeeeeccCCCeeeeecCCCCCchHHHHHHHHhhHHHHHHHhHHHHHHhhHHHHHhcCCCCCCCCCcccCCCCccccch
Q psy14699 82 GGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPVPKRTVSLTEDSKPTANNL 161 (195)
Q Consensus 82 ~g~~vrgR~YpWG~veVen~~HsDF~~LR~~LithlqdLkd~T~~~~YE~yR~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 161 (195)
+|+.++||.||||+|+|+|++||||..||++||+||+||++.|+++|||+||+++|.+++... .....
T Consensus 249 ~g~~~~gr~ypwg~~~ven~~h~df~~Lr~~l~~~~~dl~~~t~~~~ye~yr~~~l~~~~~~~------------~~~~~ 316 (361)
T 2qag_A 249 KGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKV------------ENEDM 316 (361)
T ss_dssp ----CEEECCSSCCEESSCC-CCTHHHHHHHHHHCCGGGTHHHHTTTHHHHHTTTC------------------------
T ss_pred CCeEEEEEecCCceEecCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------------cccch
Confidence 999999999999999999999999999999999999999999999999999999999876431 01123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14699 162 EKDRILQEKEAELQRMQEMIAKMQAQMQQA 191 (195)
Q Consensus 162 e~~~~l~~ke~el~r~~em~~~~q~q~~~~ 191 (195)
++++.++++|+|+++|++|+++|+++|++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (361)
T 2qag_A 317 NKDQILLEKEAELRRMQEMIARMQAQMQMQ 346 (361)
T ss_dssp ------------------------------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999875
No 5
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=100.00 E-value=1.3e-42 Score=302.21 Aligned_cols=142 Identities=69% Similarity=1.091 Sum_probs=119.0
Q ss_pred CccCCccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeeee
Q psy14699 2 KQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLEV 81 (195)
Q Consensus 2 k~L~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~~ 81 (195)
++++..+|+|||++|+|++|..|+..+|..|++.+..+||.+|.++..+.+.|+.+....+.+...+|||||||+..++.
T Consensus 150 ~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~~v~e~f~~l~~~i~~~~p~avigs~~~~~~ 229 (301)
T 2qnr_A 150 KAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEA 229 (301)
T ss_dssp HHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------CHHHHHHHHTTCSEECCCCCCBCC-
T ss_pred HHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccccccHHHHHHHHHhhcCCCceEECCCceEec
Confidence 56778899999999999999999999999999999999999999986554555667777888999999999999999999
Q ss_pred CCeeeeeccCCCeeeeecCCCCCchHHHHHHHHhhHHHHHHHhHHHHHHhhHHHHHhcCCCC
Q psy14699 82 GGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPV 143 (195)
Q Consensus 82 ~g~~vrgR~YpWG~veVen~~HsDF~~LR~~LithlqdLkd~T~~~~YE~yR~~~L~~~~~~ 143 (195)
+|+.+|||+||||+|+|+|++||||.+||++||+||+|||+.|+++|||+||+++|.+++..
T Consensus 230 ~g~~~~~r~y~wg~~~v~n~~h~df~~lr~~l~~~~~~l~~~t~~~~ye~~r~~~l~~~~~~ 291 (301)
T 2qnr_A 230 KGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRK 291 (301)
T ss_dssp ----CBEEEETTEEEETTCTTTCSHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHC----
T ss_pred CCcEEeeEcCCCceEeeCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 6
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=100.00 E-value=3.5e-39 Score=274.38 Aligned_cols=135 Identities=59% Similarity=1.030 Sum_probs=110.7
Q ss_pred CccCCccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeeee
Q psy14699 2 KQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLEV 81 (195)
Q Consensus 2 k~L~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~~ 81 (195)
+.|+..+|+|||++|+|+++++|+..++..|++.+..+||++|.|+..+. +...+....+...+|||||||+..+..
T Consensus 139 ~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~---~~~~~l~~~l~~~~p~~vv~s~~~~~~ 215 (274)
T 3t5d_A 139 KRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDD---EEENKLVKKIKDRLPLAVVGSNTIIEV 215 (274)
T ss_dssp HHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------------CHHHHHTCSEECCCCCCC---
T ss_pred HHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCC---hhHHHHHHHHhcCCCcEEEEeeeEEee
Confidence 45667899999999999999999999999999999999999999986542 233345677889999999999999999
Q ss_pred CCeeeeeccCCCeeeeecCCCCCchHHHHHHHH-hhHHHHHHHhHHHHHHhhHHHHHhc
Q psy14699 82 GGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQDLQEVTQEIHYENYRSERLVK 139 (195)
Q Consensus 82 ~g~~vrgR~YpWG~veVen~~HsDF~~LR~~Li-thlqdLkd~T~~~~YE~yR~~~L~~ 139 (195)
+|+.+|||.||||+|+|+|+.||||..||++|| +||+||++.|+++|||+||+++|.+
T Consensus 216 ~~~~~~~r~y~wg~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~~ 274 (274)
T 3t5d_A 216 NGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAA 274 (274)
T ss_dssp -----CEEECSSCEEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CCeEEEeeecccceEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999 9999999999999999999999964
No 7
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.12 E-value=1e-06 Score=73.90 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=52.5
Q ss_pred cceeeeeecCCCCCHH--HHHHHHHHHHHHHHH---cCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeee--
Q psy14699 8 VNIVPVIAKADCLTRK--EIQRLKKKVMDEIKQ---NGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLE-- 80 (195)
Q Consensus 8 VNIIPVIaKADtLT~~--El~~~K~~I~~~l~~---~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~-- 80 (195)
+++|+|++|+|..+++ ++..++..+...|.+ .|..+.+... ...+||+++++...+.
T Consensus 155 ~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~~~~p~~~v~~~~~~~~~ 218 (270)
T 1h65_A 155 NKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQ----------------ASDIPVVLIENSGRCNKN 218 (270)
T ss_dssp GGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTSG----------------GGCCCEEECCCCTTCCBC
T ss_pred cCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh----------------hccCCEEEEeCCCccccc
Confidence 6999999999988776 577777766666654 3444432210 2568999999975433
Q ss_pred eCCeeeeeccCCCee
Q psy14699 81 VGGNKVRGRQYPWGV 95 (195)
Q Consensus 81 ~~g~~vrgR~YpWG~ 95 (195)
..|+.+++|.||||.
T Consensus 219 ~~~~~v~~~~~~w~~ 233 (270)
T 1h65_A 219 DSDEKVLPNGIAWIP 233 (270)
T ss_dssp TTSCBBCTTSCBHHH
T ss_pred CCCceECCCCCCcHH
Confidence 457899999999997
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.97 E-value=0.00032 Score=60.33 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=43.0
Q ss_pred HhhhCCCceEEEecCeeeeeCCeeeeeccCCCeeeeecCCCCCchHHHHHHHH-hhHHHHHHHhH
Q psy14699 62 RQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQDLQEVTQ 125 (195)
Q Consensus 62 ~~l~~~~PFaVvgs~~~~~~~g~~vrgR~YpWG~veVen~~HsDF~~LR~~Li-thlqdLkd~T~ 125 (195)
..+.+.+||+|..+...++.+++ |+.|+|+++.||++.|+. +|| ..=+-||..-.
T Consensus 203 ~~l~~eiP~~~~v~i~~~~~~~~---~~~~i~~~i~ve~~~~k~------iiig~~g~~lk~i~~ 258 (301)
T 1wf3_A 203 KRLWHEVPYAVATKVEEVAEREN---GVLYIKAILYVERPSQKA------IVIGEGGRKIKEIGQ 258 (301)
T ss_dssp HTCCTTHHHHCEEEEEEEEEETT---TEEEEEEEEEESSHHHHH------HHHCGGGHHHHHHHH
T ss_pred HHhhcccCceEEEEEEEEEecCC---CeEEEEEEEEEeeCCceE------EEEeCCchHHHHHHH
Confidence 35678999999988887775433 789999999999999965 567 77777776654
No 9
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.14 E-value=0.076 Score=41.49 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=38.0
Q ss_pred CCccceeeeeecCCCCCHHHHHHHHHHHHHHHH----HcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEE-EecCeee
Q psy14699 5 HNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIK----QNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAV-CGANTVL 79 (195)
Q Consensus 5 ~~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~----~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaV-vgs~~~~ 79 (195)
...+.+|.|+.|+|.....++...+..+.+++. .+++.+|...... .++++.......+....+|++ +.+..+.
T Consensus 118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~-~~~~~~~~~~~~l~~~~~f~~~~~~~~v~ 196 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKI-NEEDYAENTLDVLQSTDGFKFANLEASVV 196 (218)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------CTTC----CCCGGGSSSCEE
T ss_pred cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc-ccccchhhhcccccCCCCccccccCCceE
Confidence 356789999999999987766666665555443 3466666543221 122222223334444567765 4444433
Q ss_pred eeCCe
Q psy14699 80 EVGGN 84 (195)
Q Consensus 80 ~~~g~ 84 (195)
.+.|.
T Consensus 197 ~~~~s 201 (218)
T 1nrj_B 197 AFEGS 201 (218)
T ss_dssp EEECB
T ss_pred EEecc
Confidence 34443
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=78.56 E-value=1.9 Score=33.28 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.7
Q ss_pred CccceeeeeecCCCCCHHHHHHHHHHHHHHHHH
Q psy14699 6 NKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQ 38 (195)
Q Consensus 6 ~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~ 38 (195)
..+++|.|+.|+|.+...++......+.+.+..
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 357899999999999999988888888777765
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=74.47 E-value=2.1 Score=31.93 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=31.1
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHH-cCCCccCC
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQ-NGITIYPL 46 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~-~~I~iy~f 46 (195)
.+++|.|+.|+|.++.+++......+.+.+.. .++++|..
T Consensus 133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPT 173 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEEC
T ss_pred CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 47889999999999888888888888877776 33566644
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.84 E-value=6.5 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14699 160 NLEKDRILQEKEAELQRMQEMIAKMQAQMQQA 191 (195)
Q Consensus 160 ~~e~~~~l~~ke~el~r~~em~~~~q~q~~~~ 191 (195)
+.+-...|++|.+||++-.+.++.+++++.+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777653
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=67.54 E-value=3 Score=31.28 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.0
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHH-cCCCccC
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQ-NGITIYP 45 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~-~~I~iy~ 45 (195)
.+++|.|+.|+|.+...++......+.+.+.. .++.+|.
T Consensus 134 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 134 GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 56788888999988887777666666666643 3444443
No 14
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=59.85 E-value=6.9 Score=34.14 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy14699 8 VNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGI 41 (195)
Q Consensus 8 VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I 41 (195)
.++|.|+.|+|..+.++.......+.+.+...+.
T Consensus 130 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred CCEEEEEECccccchHHHHHHHHHHHHHHHhhCC
Confidence 3789999999999999988888888888766543
No 15
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.05 E-value=21 Score=26.42 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.1
Q ss_pred HHHHhhHHHHHhcCCC
Q psy14699 127 IHYENYRSERLVKGVP 142 (195)
Q Consensus 127 ~~YE~yR~~~L~~~~~ 142 (195)
.-||.|+++.|..|+.
T Consensus 17 e~YE~~h~ErL~~mSK 32 (104)
T 3s9g_A 17 ETYERYHTESLQNMSK 32 (104)
T ss_dssp HHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHhccH
Confidence 3599999999999975
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.70 E-value=8.6 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14699 160 NLEKDRILQEKEAELQRMQEMIAKMQ 185 (195)
Q Consensus 160 ~~e~~~~l~~ke~el~r~~em~~~~q 185 (195)
+.+.++.|+++|++++..+..+.|.|
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666665543
No 17
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=49.20 E-value=12 Score=33.77 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.7
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHc
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQN 39 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~ 39 (195)
.+++|.|++|+|....+++...+..+.+.+...
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 366799999999999888888888898888877
No 18
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=47.55 E-value=40 Score=28.18 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=26.6
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCC
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLP 47 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp 47 (195)
.+.+|-|++|+|.+++.+... ...+.+.....|+++|...
T Consensus 110 ~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNEEEKKE-LERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp TCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEEcccCCCccccHH-HHHHHHHHHHCCCeEEEEE
Confidence 467889999999998865321 2334455566788776543
No 19
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=47.35 E-value=44 Score=30.87 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=59.7
Q ss_pred ccceeeeeecCCCCCH---HHHHHHHHHHHHHHHHc-CCCccCCCCCCCCccHHH-HHHHHhhhCCCceEEEecCeeeee
Q psy14699 7 KVNIVPVIAKADCLTR---KEIQRLKKKVMDEIKQN-GITIYPLPDCDSDEDEDY-KEQVRQLKEAVPFAVCGANTVLEV 81 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~---~El~~~K~~I~~~l~~~-~I~iy~fp~~~~dede~~-~~~~~~l~~~~PFaVvgs~~~~~~ 81 (195)
.|=||||-.| |..+. +++...-..|.+.|..+ ||.+.- |+.+++.. ......-...+||.|+-+...++.
T Consensus 301 qV~IiPi~~~-~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~----Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~ 375 (518)
T 3ial_A 301 HVVIIPIGCG-KKNNQESDQQVLGKVNEIADTLKSKLGLRVSI----DDDFSKSMGDKLYYYELKGVPLRIEVGQRDLAN 375 (518)
T ss_dssp SEEEEEESCS-CTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEE----CCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHT
T ss_pred EEEEEEeecC-ccccccchHHHHHHHHHHHHHHHhccCeEEEE----ECCCCCCHHHHHHHHHHcCCCEEEEECcchhhC
Confidence 5778998654 33332 45667778899999999 998852 11111111 112222235789988655433332
Q ss_pred CCeeeeeccCCC---eeeeecCC--CCCchHHHHHHHH-hhHHHHHHHhHHHHHHhhHHH
Q psy14699 82 GGNKVRGRQYPW---GVVEVENP--EHCDFTKLRTMLV-THMQDLQEVTQEIHYENYRSE 135 (195)
Q Consensus 82 ~g~~vrgR~YpW---G~veVen~--~HsDF~~LR~~Li-thlqdLkd~T~~~~YE~yR~~ 135 (195)
+--.++-|.-.= +.|.+++- .-+.=+.=|.+++ +.+.+|-+.-++..|++=+..
T Consensus 376 g~V~vr~Rd~~~~~k~~v~~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~~ 435 (518)
T 3ial_A 376 GQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAF 435 (518)
T ss_dssp TEEEEEETTTCGGGCEEEEHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccceeEeeHHHHhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344443211 12322211 0000012244444 667777666666777754443
No 20
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=46.06 E-value=36 Score=28.64 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=30.1
Q ss_pred cCCCeeeeecCCCCCchHHHHHHHHhhHHHHHHHhHHHHHHhhHHH
Q psy14699 90 QYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSE 135 (195)
Q Consensus 90 ~YpWG~veVen~~HsDF~~LR~~LithlqdLkd~T~~~~YE~yR~~ 135 (195)
-+.||.-+ ++.-+|..-==..|+.|+-++-+.= -.+|+.||..
T Consensus 53 Ls~WG~~e--dddl~DIsdklgvLl~e~ge~e~~~-a~~~d~yR~~ 95 (234)
T 3plt_A 53 LSLWGADN--DDDVSDVTDKLGVLIYELGELQDQF-IDKYDQYRVT 95 (234)
T ss_dssp HHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHhcCC--CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 46799875 5566666554455668888876654 5699999984
No 21
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=45.19 E-value=78 Score=28.77 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=37.7
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHH-HHHhhhCCCceEEEecCee
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKE-QVRQLKEAVPFAVCGANTV 78 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~-~~~~l~~~~PFaVvgs~~~ 78 (195)
.|=|||++++.+. ++....=..|.+.|+.+||.+.- | +.+..... ....-...+||.||-+...
T Consensus 316 qV~Iipi~~~~~~---~~~~~~a~~l~~~Lr~~Gi~v~~----D-~~~~s~g~k~~~a~~~G~p~~iiiG~~e 380 (501)
T 1nj1_A 316 QVVIVPIIFKKAA---EEVMEACRELRSRLEAAGFRVHL----D-DRDIRAGRKYYEWEMRGVPLRVEIGPRD 380 (501)
T ss_dssp SEEEEECCSSSSH---HHHHHHHHHHHHHHHTTTCCEEE----C-CCSSCHHHHHHHHHHEECSEEEEECHHH
T ss_pred eEEEEEeccCCch---HHHHHHHHHHHHHHHhCCCEEEE----E-CCCCCHHHHHHHHHhcCCCEEEEECcch
Confidence 4678887432211 46667778899999999999742 1 11222221 2222346799998755443
No 22
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=42.03 E-value=1.2e+02 Score=27.25 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=43.2
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHH-HHHhhhCCCceEEEecCeeeeeCCee
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKE-QVRQLKEAVPFAVCGANTVLEVGGNK 85 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~-~~~~l~~~~PFaVvgs~~~~~~~g~~ 85 (195)
.|-|||+-.+.+ .++....=..|.+.|+.+||.+.- .+ . .+..... ....-...+||+||-+...++.+--.
T Consensus 289 qV~Iipi~~~~~---~~~~~~~a~~l~~~Lr~~Gi~v~~-D~--~-~~~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~ 361 (477)
T 1hc7_A 289 QVVIVPIYKDES---RERVLEAAQGLRQALLAQGLRVHL-DD--R-DQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAV 361 (477)
T ss_dssp SEEEEECCCTTT---HHHHHHHHHHHHHHHHHTTCCEEE-CC--C-SSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEE
T ss_pred eEEEEEcCCcch---HHHHHHHHHHHHHHHHhCCEEEEE-eC--C-CCCCHHHHHHHHhhcCCCEEEEECcchhcCCEEE
Confidence 467888754322 236777778899999999999752 11 1 0121211 22333568999986554443332223
Q ss_pred eeecc
Q psy14699 86 VRGRQ 90 (195)
Q Consensus 86 vrgR~ 90 (195)
++.|.
T Consensus 362 vr~r~ 366 (477)
T 1hc7_A 362 LASRL 366 (477)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 55554
No 23
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=41.61 E-value=16 Score=33.03 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=34.8
Q ss_pred eeeeeecCC---CCCHHHHHHHHHHHHHHHHHcCC-CccCCCCCC
Q psy14699 10 IVPVIAKAD---CLTRKEIQRLKKKVMDEIKQNGI-TIYPLPDCD 50 (195)
Q Consensus 10 IIPVIaKAD---tLT~~El~~~K~~I~~~l~~~~I-~iy~fp~~~ 50 (195)
|+||=+|-= .|+.+..+.+=++|+..|+.+|+ +|++|.+++
T Consensus 296 i~PVNgkWydytGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~~~ 340 (407)
T 3bma_A 296 IPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDG 340 (407)
T ss_dssp ECCCCHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCCEEECTTCT
T ss_pred EeCCchHHHHhcCCCHHHHHHHHHHHHHHHHHCCCcceeeccccC
Confidence 457777643 59999999999999999999999 999997654
No 24
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.37 E-value=20 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14699 160 NLEKDRILQEKEAELQRMQEMIAKMQAQMQ 189 (195)
Q Consensus 160 ~~e~~~~l~~ke~el~r~~em~~~~q~q~~ 189 (195)
...|+..+.+.|.+|+.-.+-++.++.++.
T Consensus 20 i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 20 LMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 25
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=38.40 E-value=11 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.323 Sum_probs=24.0
Q ss_pred eeeccCCCeeeeec----CCC------------C--CchHHHHHHHH-hhHHHHHHHh
Q psy14699 86 VRGRQYPWGVVEVE----NPE------------H--CDFTKLRTMLV-THMQDLQEVT 124 (195)
Q Consensus 86 vrgR~YpWG~veVe----n~~------------H--sDF~~LR~~Li-thlqdLkd~T 124 (195)
.+.++||||.|+|. +.. . .++..|-+.|. .-..+|...-
T Consensus 9 ~~~~kf~~G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~~l 66 (91)
T 3r07_C 9 SKNWKAKKGLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKINDII 66 (91)
T ss_dssp EEEEECSSCEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHHHH
T ss_pred EEEEEcCCcEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHHHH
Confidence 45689999998764 221 1 23667777777 5555555444
No 26
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.07 E-value=39 Score=22.75 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14699 170 KEAELQRMQEMIAKMQAQ 187 (195)
Q Consensus 170 ke~el~r~~em~~~~q~q 187 (195)
.-.|||.||-++.++|..
T Consensus 39 ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 456888999888888753
No 27
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=36.62 E-value=32 Score=31.66 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.5
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHH
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMD 34 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~ 34 (195)
.+++|.|++|+|.++.+++..+...++-
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~~~~l~~ 245 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRVYGALMW 245 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHHHHHhhc
Confidence 4789999999999999999888888763
No 28
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=36.40 E-value=2.2e+02 Score=26.80 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14699 160 NLEKDRILQEKEAELQRMQEMIAKMQAQMQQ 190 (195)
Q Consensus 160 ~~e~~~~l~~ke~el~r~~em~~~~q~q~~~ 190 (195)
..+..+.+.+.+.+++++....++++..+..
T Consensus 361 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 361 VNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777776666666666555543
No 29
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=35.45 E-value=57 Score=22.23 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=23.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14699 158 ANNLEKDRILQEKEAELQRMQEMIAKMQAQMQ 189 (195)
Q Consensus 158 ~~~~e~~~~l~~ke~el~r~~em~~~~q~q~~ 189 (195)
...++.+..|..+++|++..+..+.|.|+=+.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678888888899999999999988876554
No 30
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=35.19 E-value=29 Score=30.08 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=28.3
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHH---cCCCccC
Q psy14699 8 VNIVPVIAKADCLTRKEIQRLKKKVMDEIKQ---NGITIYP 45 (195)
Q Consensus 8 VNIIPVIaKADtLT~~El~~~K~~I~~~l~~---~~I~iy~ 45 (195)
.++|.|++|+|....++.......|.+.+.. .+++++.
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~ 178 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIP 178 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEE
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEE
Confidence 4689999999999988776666677777765 3555553
No 31
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=34.69 E-value=19 Score=27.48 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=43.2
Q ss_pred CccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccC-CCCCCCCccHHHHHH-HHhhhCCCceEEEecCeeeeeCC
Q psy14699 6 NKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYP-LPDCDSDEDEDYKEQ-VRQLKEAVPFAVCGANTVLEVGG 83 (195)
Q Consensus 6 ~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~-fp~~~~dede~~~~~-~~~l~~~~PFaVvgs~~~~~~~g 83 (195)
.-|-||||= | +...+=+.|.+.|...||.+=- ++ .+++..... -..-...+||.+|-+...++.+.
T Consensus 9 ~Qv~IlpVs---~-----~~~~YA~~V~~~L~~~GiRvevD~~----r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~s 76 (130)
T 1v95_A 9 VDCSVIVVN---K-----QTKDYAESVGRKVRDLGMVVDLIFL----NTEVSLSQALEDVSRGGSPFAIVITQQHQIHRS 76 (130)
T ss_dssp CTEEEEESS---S-----GGGHHHHHHHHHHHTTTCCEEEEEC----TTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTE
T ss_pred CeEEEEEeC---c-----chHHHHHHHHHHHHHCCCEEEEecC----CCCCcHHHHHHHHHHcCCCEEEEEechHHhcCe
Confidence 357788882 2 2347778899999999998731 11 002222211 22235789999988777666544
Q ss_pred eeeeec
Q psy14699 84 NKVRGR 89 (195)
Q Consensus 84 ~~vrgR 89 (195)
-.||-|
T Consensus 77 VsVR~r 82 (130)
T 1v95_A 77 CTVNIM 82 (130)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 344433
No 32
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.27 E-value=46 Score=18.48 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy14699 172 AELQRMQEMIAKMQAQMQQ 190 (195)
Q Consensus 172 ~el~r~~em~~~~q~q~~~ 190 (195)
.||+..||.+.++.+.++.
T Consensus 8 keledlqerlrklrkklrs 26 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4688899999999888763
No 33
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=33.45 E-value=34 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=19.2
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHHcC
Q psy14699 8 VNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNG 40 (195)
Q Consensus 8 VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~ 40 (195)
+.++.|..|+|.++..+.+.....++..+.+.+
T Consensus 138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 138 IAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred CCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 345666777777777665543444555554444
No 34
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=33.39 E-value=64 Score=30.29 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=43.4
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHH-HHHhhhCCCceEEEecCeeeeeCCee
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKE-QVRQLKEAVPFAVCGANTVLEVGGNK 85 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~-~~~~l~~~~PFaVvgs~~~~~~~g~~ 85 (195)
.|=||||- ++....=..|.+.|+++||.+.- | +.++.... ....-...+||+||-+...++.+--.
T Consensus 541 qv~vipi~--------~~~~~~a~~v~~~L~~~Gi~v~~----D-~~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~ 607 (642)
T 1qf6_A 541 QVVIMNIT--------DSQSEYVNELTQKLSNAGIRVKA----D-LRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVA 607 (642)
T ss_dssp CEEEEESS--------HHHHHHHHHHHHHHHTTTCCEEE----E-CCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEE
T ss_pred eEEEEEeC--------HHHHHHHHHHHHHHHhCCCEEEE----E-CCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEE
Confidence 46678873 56677788999999999999851 1 11222222 12223578999988766555443334
Q ss_pred eeecc
Q psy14699 86 VRGRQ 90 (195)
Q Consensus 86 vrgR~ 90 (195)
||.|.
T Consensus 608 vr~r~ 612 (642)
T 1qf6_A 608 VRTRR 612 (642)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 55444
No 35
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=33.27 E-value=82 Score=27.51 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=26.9
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCC
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPL 46 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~f 46 (195)
...+|-|++|+|.+++++.... ..+...+...|++++-.
T Consensus 160 ~~~~iivlNK~DL~~~~~~~~~-~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEGMDFV-NEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp TCEEEEEEECGGGCCHHHHHHH-HHHHHHHHTTTCCEEEC
T ss_pred CCCEEEEEECccCCCchhHHHH-HHHHHHHHhCCCcEEEE
Confidence 3567889999999998764333 33445567778887644
No 36
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=32.55 E-value=55 Score=29.88 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcc-CCCCCCCCccHHHHH-HHHhhhCCCceEEEecCeeeeeCCeeeeecc
Q psy14699 23 KEIQRLKKKVMDEIKQNGITIY-PLPDCDSDEDEDYKE-QVRQLKEAVPFAVCGANTVLEVGGNKVRGRQ 90 (195)
Q Consensus 23 ~El~~~K~~I~~~l~~~~I~iy-~fp~~~~dede~~~~-~~~~l~~~~PFaVvgs~~~~~~~g~~vrgR~ 90 (195)
+++..+=..|.+.|+++||.+. .+.+. .++.... ....-...+||+||-+...++.+--.+|-|.
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr---~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rd 427 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLET---MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRD 427 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSS---SCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCC---cCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECC
Confidence 5677888899999999999985 22211 0222221 1222245799998766554443222344443
No 37
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.82 E-value=60 Score=18.85 Aligned_cols=20 Identities=15% Similarity=0.511 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14699 170 KEAELQRMQEMIAKMQAQMQ 189 (195)
Q Consensus 170 ke~el~r~~em~~~~q~q~~ 189 (195)
.|+++|..+....++|+.+-
T Consensus 4 lee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776653
No 38
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=31.44 E-value=26 Score=27.51 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=22.6
Q ss_pred cceeeeeecCCCCCHHHHHHHH----HHHHHHHHHcCCCccCCCC
Q psy14699 8 VNIVPVIAKADCLTRKEIQRLK----KKVMDEIKQNGITIYPLPD 48 (195)
Q Consensus 8 VNIIPVIaKADtLT~~El~~~K----~~I~~~l~~~~I~iy~fp~ 48 (195)
.++|.|+.|+|.+...++..+- ..+...++..|..++.|..
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~ 190 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNN 190 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCT
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEEC
Confidence 4789999999998877766443 3455566667777665543
No 39
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=31.21 E-value=63 Score=27.88 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=25.0
Q ss_pred ccceeeeeecCCCCCHHH-HHHHHHHHHHHHHHcCC
Q psy14699 7 KVNIVPVIAKADCLTRKE-IQRLKKKVMDEIKQNGI 41 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~E-l~~~K~~I~~~l~~~~I 41 (195)
...+|-|+.|+|.+..+. ....+..+...++..|+
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~ 131 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGL 131 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCC
Confidence 467899999999987542 33455566666777888
No 40
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=30.59 E-value=53 Score=20.81 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14699 19 CLTRKEIQRLKKKVMDEIKQ 38 (195)
Q Consensus 19 tLT~~El~~~K~~I~~~l~~ 38 (195)
+.|..++..||+-|+++++.
T Consensus 3 ~~~~~dle~~KqEIL~E~Rk 22 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKK 22 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 56788899999988887753
No 41
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.45 E-value=11 Score=34.17 Aligned_cols=24 Identities=33% Similarity=0.223 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q psy14699 157 TANNLEKDRILQEKEAELQRMQEM 180 (195)
Q Consensus 157 ~~~~~e~~~~l~~ke~el~r~~em 180 (195)
+.++.+++.+++++|+||+++|++
T Consensus 325 ~~~~~~~~~~~~~~e~~~~~~f~~ 348 (427)
T 2qag_B 325 EAKRNEFLGELQKKEEEMRQMFVQ 348 (427)
T ss_dssp ------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999888763
No 42
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=29.99 E-value=51 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.0
Q ss_pred CCccceeeeeecCCCCCHHHHHHHHHHH
Q psy14699 5 HNKVNIVPVIAKADCLTRKEIQRLKKKV 32 (195)
Q Consensus 5 ~~~VNIIPVIaKADtLT~~El~~~K~~I 32 (195)
...+.+|-|..|+|.+..++...-.+.|
T Consensus 127 ~~~~piilv~nK~Dl~~~~~~~~~~~~v 154 (196)
T 3llu_A 127 NPDMNFEVFIHKVDGLSDDHKIETQRDI 154 (196)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeccccCchhhhhHHHhHH
Confidence 3567899999999999976654433333
No 43
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=29.71 E-value=76 Score=27.18 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=41.2
Q ss_pred cceeeeee-cCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCc-eEEEecCeeeeeCCee
Q psy14699 8 VNIVPVIA-KADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVP-FAVCGANTVLEVGGNK 85 (195)
Q Consensus 8 VNIIPVIa-KADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~P-FaVvgs~~~~~~~g~~ 85 (195)
+.|.=||+ +.|. ..-.+++||++|.+|....+..+...+....+.+.-| +.|+.+-..+ ....
T Consensus 133 ~~I~~Visn~~~~-------------~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~I-L~~~- 197 (302)
T 3o1l_A 133 CDIACVISNHQDL-------------RSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQI-LPPQ- 197 (302)
T ss_dssp SEEEEEEESSSTT-------------HHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCSC-CCTT-
T ss_pred cEEEEEEECcHHH-------------HHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhhh-cCHH-
Confidence 56777888 6762 1225689999999875321111111123344544434 5555443222 1121
Q ss_pred eeeccCCCeeeeecC
Q psy14699 86 VRGRQYPWGVVEVEN 100 (195)
Q Consensus 86 vrgR~YpWG~veVen 100 (195)
--..||.|++++--
T Consensus 198 -~l~~~~~~~INiHp 211 (302)
T 3o1l_A 198 -LCREYAHQVINIHH 211 (302)
T ss_dssp -HHHHTTTCEEEEES
T ss_pred -HHhhhhCCeEEeCc
Confidence 23678889988753
No 44
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=29.26 E-value=65 Score=26.68 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=30.0
Q ss_pred CCccceeeeeecCCCCCHHHHH----HHHHHHHHHHHHcC---CCccCC
Q psy14699 5 HNKVNIVPVIAKADCLTRKEIQ----RLKKKVMDEIKQNG---ITIYPL 46 (195)
Q Consensus 5 ~~~VNIIPVIaKADtLT~~El~----~~K~~I~~~l~~~~---I~iy~f 46 (195)
...+++|-|+.|+|...+++.. .....+.+.....| +.+|..
T Consensus 113 ~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 113 SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3468999999999999977776 44456666666777 555543
No 45
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=29.02 E-value=31 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=26.4
Q ss_pred CccceeeeeecCCCCCHHHHHHHHHHHHHHHH
Q psy14699 6 NKVNIVPVIAKADCLTRKEIQRLKKKVMDEIK 37 (195)
Q Consensus 6 ~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~ 37 (195)
..+++|-|+.|+|..........+..+.+.+.
T Consensus 114 ~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp TCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 35789999999999887777778888877775
No 46
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=28.99 E-value=45 Score=29.20 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=25.3
Q ss_pred ceeeeeecCCCCC--HHHHHHHHHHHHHHHHHcC
Q psy14699 9 NIVPVIAKADCLT--RKEIQRLKKKVMDEIKQNG 40 (195)
Q Consensus 9 NIIPVIaKADtLT--~~El~~~K~~I~~~l~~~~ 40 (195)
++|.|+.|+|... ++.+...+..+.+.+...|
T Consensus 159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC
Confidence 5899999999986 4556667777877777777
No 47
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=28.58 E-value=61 Score=27.96 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=25.8
Q ss_pred cc-eeeeeecCCCCC-HHHHHHHHHHHHHHHHHcCC
Q psy14699 8 VN-IVPVIAKADCLT-RKEIQRLKKKVMDEIKQNGI 41 (195)
Q Consensus 8 VN-IIPVIaKADtLT-~~El~~~K~~I~~~l~~~~I 41 (195)
+. +|.|++|+|... .+.+...+..+.+.+...|+
T Consensus 128 ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 128 VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp CCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 45 889999999985 44456677788888887774
No 48
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.43 E-value=1.1e+02 Score=19.05 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14699 162 EKDRILQEKEAELQRMQEMIAKMQAQMQQ 190 (195)
Q Consensus 162 e~~~~l~~ke~el~r~~em~~~~q~q~~~ 190 (195)
|.-.++.+-++|+....+.++.+|+++++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667789999999999999988765
No 49
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=27.92 E-value=2.6e+02 Score=24.88 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=36.4
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHH-HHHhhhCCCceEEEecCeee
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKE-QVRQLKEAVPFAVCGANTVL 79 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~-~~~~l~~~~PFaVvgs~~~~ 79 (195)
.|=|||+++|.|. +++...=..|.+.|+.+ |.+.- | +.+..... ....-...+||.||-+...+
T Consensus 284 qv~Iipi~~~~~~---~~~~~~a~~l~~~Lr~~-i~v~~----D-~~~~~~g~k~~~a~~~G~p~~iiiG~~el 348 (459)
T 1nj8_A 284 QVVIVPLIFKGKE---DIVMEKAKEIYEKLKGK-FRVHI----D-DRDIRPGRKFNDWEIKGVPLRIEVGPKDI 348 (459)
T ss_dssp SEEEEECCCSSCH---HHHHHHHHHHHHHHHTT-SCEEE----C-CSCSCHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred cEEEEecccCCcH---HHHHHHHHHHHHHHhhh-cEEEE----E-CCCCCHHHHHHHHHHcCCCEEEEECcchh
Confidence 4678887432211 46667778899999987 77641 1 11222221 22233568999987554433
No 50
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.32 E-value=13 Score=33.25 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy14699 156 PTANNLEKDRILQEKEAELQRMQEMIAK 183 (195)
Q Consensus 156 ~~~~~~e~~~~l~~ke~el~r~~em~~~ 183 (195)
.++++.+++.+++++|+||+++|++.=+
T Consensus 320 ~~~~~~~~~~~~~~~e~~~~~~f~~~v~ 347 (418)
T 2qag_C 320 MEEERREHVAKMKKMEMEMEQVFEMKVK 347 (418)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999988886443
No 51
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=26.47 E-value=15 Score=26.20 Aligned_cols=11 Identities=27% Similarity=1.069 Sum_probs=9.3
Q ss_pred eeeeccCCCee
Q psy14699 85 KVRGRQYPWGV 95 (195)
Q Consensus 85 ~vrgR~YpWG~ 95 (195)
.+|...||||-
T Consensus 54 ~IR~K~FPWGd 64 (85)
T 1v54_G 54 RIRTKPFSWGD 64 (85)
T ss_dssp SCCSSCCSSTT
T ss_pred heecCCCCCCC
Confidence 58889999984
No 52
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=25.97 E-value=11 Score=28.24 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=10.9
Q ss_pred CccceeeeeecCCCCC
Q psy14699 6 NKVNIVPVIAKADCLT 21 (195)
Q Consensus 6 ~~VNIIPVIaKADtLT 21 (195)
..+++|-|+.|+|...
T Consensus 125 ~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 125 RRIPILFFANKMDLRD 140 (190)
T ss_dssp SCCCEEEEEECTTSTT
T ss_pred CCCeEEEEEeCcCccc
Confidence 3566777777777654
No 53
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=25.62 E-value=57 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=26.6
Q ss_pred ceeeeeecCCCC--CHHHHHHHHHHHHHHHHHcCC
Q psy14699 9 NIVPVIAKADCL--TRKEIQRLKKKVMDEIKQNGI 41 (195)
Q Consensus 9 NIIPVIaKADtL--T~~El~~~K~~I~~~l~~~~I 41 (195)
++|.|+.|.|.. ..+.+...+..+.+.+...|+
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 489999999998 467777788888888877764
No 54
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=25.41 E-value=1e+02 Score=26.51 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=25.3
Q ss_pred ccceeeeeecCCCCCHHH-HHHHHHHHHHHHHHcCCC
Q psy14699 7 KVNIVPVIAKADCLTRKE-IQRLKKKVMDEIKQNGIT 42 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~E-l~~~K~~I~~~l~~~~I~ 42 (195)
...+|-|+.|+|.+..+. ....+..+.+.++..|++
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 457888999999987532 334555666667788874
No 55
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=24.79 E-value=21 Score=31.03 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=25.6
Q ss_pred cceeeeeecCCCCCHHHHHHHHHHHHHHHHHc---CCCccC
Q psy14699 8 VNIVPVIAKADCLTRKEIQRLKKKVMDEIKQN---GITIYP 45 (195)
Q Consensus 8 VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~---~I~iy~ 45 (195)
.++|.|++|+|....++.......|.+.+... +++++.
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~ 176 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIP 176 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEE
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEE
Confidence 36899999999998766544455666666543 455543
No 56
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=24.46 E-value=62 Score=28.36 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=27.7
Q ss_pred cceeeeeecCCCCC----HHHHHHHHHHHHHHHHHcCC
Q psy14699 8 VNIVPVIAKADCLT----RKEIQRLKKKVMDEIKQNGI 41 (195)
Q Consensus 8 VNIIPVIaKADtLT----~~El~~~K~~I~~~l~~~~I 41 (195)
.++|.|+.|.|... .+.+...+..+.+.+...|+
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF 182 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 36899999999987 56667888888888888774
No 57
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=24.24 E-value=17 Score=29.16 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCCCCCCccHHHHHHHHhhhCCCceEEEecCeeeeeCCeeeeeccCCC-eeeeecC
Q psy14699 22 RKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPW-GVVEVEN 100 (195)
Q Consensus 22 ~~El~~~K~~I~~~l~~~~I~iy~fp~~~~dede~~~~~~~~l~~~~PFaVvgs~~~~~~~g~~vrgR~YpW-G~veVen 100 (195)
+++.+.+.++|++.|...|. .+.+.|+.+++...-.. + ..|. ..|.+.|
T Consensus 3 ~d~~~~~~~~ir~~L~~~G~-----------------------~Evitysf~s~~~~~~~-~------~~~~~~~v~l~N 52 (213)
T 3ica_A 3 ADRRYKWQTVVSEQLVGAGF-----------------------NEILNNSLTAGSYYEGL-K------SHPREMAVELMN 52 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-----------------------EECCCCSEEEGGGGTTC-S------SSCGGGCCBCSS
T ss_pred cCHHHHHHHHHHHHHHHCCC-----------------------ceeeeccCCCHHHHhhh-c------ccCcCCeEEecC
Confidence 45677888999999887763 23555555554311001 0 0111 3588999
Q ss_pred CCCCchHHHHHHHH-hhHHHH
Q psy14699 101 PEHCDFTKLRTMLV-THMQDL 120 (195)
Q Consensus 101 ~~HsDF~~LR~~Li-thlqdL 120 (195)
|--.|+..||..|+ .-|+-+
T Consensus 53 Pls~e~~vmRtsLlpgLL~~~ 73 (213)
T 3ica_A 53 PLSQELNCMRQTLLFGGLETL 73 (213)
T ss_dssp BSCSSEEEECSSSHHHHHHHH
T ss_pred CccHHHHHHHHHhHHHHHHHH
Confidence 99999999999999 666554
No 58
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=24.01 E-value=31 Score=24.18 Aligned_cols=15 Identities=33% Similarity=0.270 Sum_probs=7.8
Q ss_pred ccceeeeeecCCCCC
Q psy14699 7 KVNIVPVIAKADCLT 21 (195)
Q Consensus 7 ~VNIIPVIaKADtLT 21 (195)
.+++|-|+.|+|...
T Consensus 108 ~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAA 122 (166)
T ss_dssp CCCEEEEEECTTCSC
T ss_pred CCcEEEEEEchhhhh
Confidence 345555555555443
No 59
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=23.88 E-value=10 Score=32.99 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=28.5
Q ss_pred CccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q psy14699 6 NKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIY 44 (195)
Q Consensus 6 ~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy 44 (195)
.++++++|++|+|.++.+++......+.+.+ |..++
T Consensus 273 ~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~---g~~l~ 308 (369)
T 3ec1_A 273 GRRSFVCYMANELTVHRTKLEKADSLYANQL---GELLS 308 (369)
T ss_dssp SSEEEEEEECTTSCEEEEEGGGHHHHHHHHB---TTTBC
T ss_pred CCceEEEEecCCcccccccHHHHHHHHHHhc---CCccC
Confidence 4578999999999999999988877776654 55554
No 60
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.00 E-value=20 Score=26.28 Aligned_cols=11 Identities=27% Similarity=1.069 Sum_probs=9.3
Q ss_pred eeeeccCCCee
Q psy14699 85 KVRGRQYPWGV 95 (195)
Q Consensus 85 ~vrgR~YpWG~ 95 (195)
.+|...||||-
T Consensus 66 ~IR~K~FPWGD 76 (97)
T 2y69_G 66 RIRTKPFSWGD 76 (97)
T ss_dssp SCCSSCCSSTT
T ss_pred hhccCCCCCCC
Confidence 57889999984
No 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=22.56 E-value=47 Score=23.94 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=20.8
Q ss_pred ccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCccCC
Q psy14699 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPL 46 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy~f 46 (195)
.+.+|-|+.|+|.....++. ...+.+.+..+|+.+|..
T Consensus 117 ~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 154 (181)
T 2efe_B 117 NMVMALAGNKSDLLDARKVT--AEDAQTYAQENGLFFMET 154 (181)
T ss_dssp TCEEEEEEECTTCTTTCCSC--HHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEECCcccccccCC--HHHHHHHHHHcCCEEEEE
Confidence 56678888888876432211 122333344567766643
No 62
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=22.44 E-value=1.5e+02 Score=18.44 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14699 161 LEKDRILQEKEAELQRMQEMIAKMQAQMQQ 190 (195)
Q Consensus 161 ~e~~~~l~~ke~el~r~~em~~~~q~q~~~ 190 (195)
.|+++.|++..+||| ..||.=-+-+.+++
T Consensus 4 ~ere~~i~~LreeLR-~EEaKLvLLKKlrq 32 (43)
T 2l2l_A 4 EERERMIKQLKEELR-LEEAKLVLLKKLRQ 32 (43)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 578999999999983 23433333334443
No 63
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=21.53 E-value=2.3e+02 Score=23.21 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14699 161 LEKDRILQEKEAELQRMQEMIAKMQAQ 187 (195)
Q Consensus 161 ~e~~~~l~~ke~el~r~~em~~~~q~q 187 (195)
.++.++|.+-+++|++.+.+++.|++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (310)
T 3n5l_A 278 EEKAAKLKALDEELAKLEKRMAEREQK 304 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888888888888888887777654
No 64
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=21.30 E-value=30 Score=26.83 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=8.6
Q ss_pred ccceeeeeecCCCCCH
Q psy14699 7 KVNIVPVIAKADCLTR 22 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~ 22 (195)
.+++|-|+.|+|.+..
T Consensus 142 ~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNM 157 (228)
T ss_dssp CCCEEEEEECGGGCC-
T ss_pred CCcEEEEEeCcccCCc
Confidence 4555666666665544
No 65
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=21.18 E-value=19 Score=31.22 Aligned_cols=36 Identities=6% Similarity=0.102 Sum_probs=27.9
Q ss_pred CccceeeeeecCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q psy14699 6 NKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIY 44 (195)
Q Consensus 6 ~~VNIIPVIaKADtLT~~El~~~K~~I~~~l~~~~I~iy 44 (195)
.++++++|++|+|.++..++........+. .|..++
T Consensus 272 ~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~---~g~~l~ 307 (368)
T 3h2y_A 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNH---AGDLLS 307 (368)
T ss_dssp SSEEEEEEECTTSCEEEEEHHHHHHHHHHH---BTTTBC
T ss_pred CCceEEEEecCccccccccHHHHHHHHHHH---hCCccC
Confidence 357899999999999999987777666654 455555
No 66
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=20.99 E-value=1.5e+02 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.5
Q ss_pred ccceeeeeecCCCCCHHHH
Q psy14699 7 KVNIVPVIAKADCLTRKEI 25 (195)
Q Consensus 7 ~VNIIPVIaKADtLT~~El 25 (195)
.+.+|-|+.|+|.....+.
T Consensus 115 ~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp TCEEEEEECCGGGCCHHHH
T ss_pred CCCEEEEEeHHHcCCchhH
Confidence 5778899999999887654
No 67
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=20.71 E-value=1.1e+02 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=25.7
Q ss_pred cc-eeeeeecCCCCC-HHHHHHHHHHHHHHHHHcCC
Q psy14699 8 VN-IVPVIAKADCLT-RKEIQRLKKKVMDEIKQNGI 41 (195)
Q Consensus 8 VN-IIPVIaKADtLT-~~El~~~K~~I~~~l~~~~I 41 (195)
+. +|.|+.|+|... .+.+...+..+.+.+...|+
T Consensus 119 vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY 154 (397)
T ss_dssp CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 44 789999999985 44456677788888888774
No 68
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.51 E-value=1.5e+02 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14699 160 NLEKDRILQEKEAELQRMQEMIAKMQAQM 188 (195)
Q Consensus 160 ~~e~~~~l~~ke~el~r~~em~~~~q~q~ 188 (195)
++..+..+..++.++..+++.+++..+..
T Consensus 9 ~~~~eeEm~~~eeel~~lke~l~k~e~~r 37 (89)
T 3bas_A 9 IARQEEEMKEQLKQMDKMKEDLAKTERIK 37 (89)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888887655543
Done!