RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14699
(195 letters)
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 178 bits (453), Expect = 2e-55
Identities = 123/190 (64%), Positives = 149/190 (78%), Gaps = 12/190 (6%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK +HNKVNIVPVIAKAD LT KE +RLKK+++DEI+++ I IY LPD +SDEDED+KEQ
Sbjct: 168 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQ 227
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDL 120
R LK ++PF+V G+N ++E G KVRGR YPWGVVEVENPEH DF KLRTML+THMQDL
Sbjct: 228 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDL 287
Query: 121 QEVTQEIHYENYRSERLVKGVPVPKRTVSLTEDSKPTANNLEKDRILQEKEAELQRMQEM 180
QEVTQ++HYEN+RSERL +G K ++ KD+IL EKEAEL+RMQEM
Sbjct: 288 QEVTQDLHYENFRSERLKRG------------GRKVENEDMNKDQILLEKEAELRRMQEM 335
Query: 181 IAKMQAQMQQ 190
IA+MQAQMQ
Sbjct: 336 IARMQAQMQM 345
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 162 bits (411), Expect = 3e-50
Identities = 80/138 (57%), Positives = 108/138 (78%), Gaps = 4/138 (2%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+LH KVNI+P+IAKAD LT +E Q+ KK++M EI+++ I IY P+ D +E+ +
Sbjct: 138 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN---KL 194
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
V+++K+ +P AV G+NT++EV G +VRGRQYPWGV EVEN EHCDFT LR ML+ THMQD
Sbjct: 195 VKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQD 254
Query: 120 LQEVTQEIHYENYRSERL 137
L++VT +HYENYRS +L
Sbjct: 255 LKDVTNNVHYENYRSRKL 272
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 163 bits (412), Expect = 4e-50
Identities = 99/140 (70%), Positives = 120/140 (85%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK +HNKVNIVPVIAKAD LT KE +RLKK+++DEI+++ I IY LPD +SDEDED+KEQ
Sbjct: 149 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQ 208
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLVTHMQDL 120
R LK ++PF+V G+N ++E G KVRGR YPWGVVEVENPEH DF KLRTML+THMQDL
Sbjct: 209 TRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDL 268
Query: 121 QEVTQEIHYENYRSERLVKG 140
QEVTQ++HYEN+RSERL +G
Sbjct: 269 QEVTQDLHYENFRSERLKRG 288
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 164 bits (416), Expect = 2e-49
Identities = 73/198 (36%), Positives = 106/198 (53%), Gaps = 7/198 (3%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+L +KVNI+P+IAKAD +++ E+ + K K+ E+ NG+ IY P +DE E
Sbjct: 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT----DDESVAEI 225
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
+ +PFAV G+ L++G +R RQYPWG V+VEN HCDF KLR ML+ +M+D
Sbjct: 226 NGTMNAHLPFAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMED 285
Query: 120 LQEVTQEIHYENYRSERLVKGVPVPKRTVSLTED--SKPTANNLEKDRILQEKEAELQRM 177
L+E T HYE YR +L + S A E LQ+KE E+++M
Sbjct: 286 LREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQM 345
Query: 178 QEMIAKMQAQMQQAQSGQ 195
K + + +
Sbjct: 346 FVQRVKEKEAELKEAEKE 363
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 158 bits (400), Expect = 5e-47
Identities = 84/193 (43%), Positives = 128/193 (66%), Gaps = 5/193 (2%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQ 60
MK+LH KVNI+P+IAKAD LT +E Q+ KK++M EI+++ I IY P+ D +E+ +
Sbjct: 161 MKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN---KL 217
Query: 61 VRQLKEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTMLV-THMQD 119
V+++K+ +P AV G+NT++EV G +VRGRQYPWGV EVEN EHCDFT LR ML+ THMQD
Sbjct: 218 VKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQD 277
Query: 120 LQEVTQEIHYENYRSERLVKGVPVPKRTVSLTEDSKPTANNLEKDRILQEKEAELQRMQE 179
L++VT +HYENYRS +L V + + + + + +E A++++M+
Sbjct: 278 LKDVTNNVHYENYRSRKL-AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEM 336
Query: 180 MIAKMQAQMQQAQ 192
+ ++ + +
Sbjct: 337 EMEQVFEMKVKEK 349
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 8e-06
Identities = 33/179 (18%), Positives = 52/179 (29%), Gaps = 61/179 (34%)
Query: 3 QLHNKVNIVPVIAKA-----DCLTRKEIQRLKKKVM--DEIKQNGITIYPLPDCDSDEDE 55
Q K +I+ V A DC K++Q + K ++ +EI I D
Sbjct: 15 QYQYK-DILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDH----IIMSKDAV----- 61
Query: 56 DYKEQVRQL--------KEAVPFAVCGANTVLEVGGNKVRGRQYPWGVVEVENPEHCDFT 107
+L +E V V VL Y + + +
Sbjct: 62 ---SGTLRLFWTLLSKQEEMVQKFV---EEVLR--------INYKFLM-----------S 96
Query: 108 KLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPV-PKRTVSLTEDSKPTANNLEKDR 165
++T + Q Y R +RL V K VS + L + R
Sbjct: 97 PIKT------EQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Score = 36.0 bits (82), Expect = 0.006
Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 71/240 (29%)
Query: 5 HNKV-NIVPVIAKADCLTRKE-IQRLKKKVMDEIKQNGITIY------------------ 44
+++ N V AK + ++R + +L++ +++ + I
Sbjct: 116 RDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 45 ----PLPD---------CDSDED-----EDYKEQVRQLKEAVPFAVCGANTVLEVGGNKV 86
+ C+S E + Q+ + + ++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 87 R----GRQYPWGVV---EVENPEHCDFTKLR-TMLVTHMQDLQEVTQEIHYENYRSERLV 138
R + Y ++ V+N + + L +L+T T+ ++ S
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--------TRFKQVTDFLSAATT 286
Query: 139 KGVPVPKRTVSLTEDSKPTANNLEKDRILQEKEAELQRMQE----------MIAKMQAQM 188
+ + +++LT D + L K L + +L R E +IA+
Sbjct: 287 THISLDHHSMTLTPDE--VKSLLLK--YLDCRPQDLPR--EVLTTNPRRLSIIAESIRDG 340
Score = 35.2 bits (80), Expect = 0.011
Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 70/214 (32%)
Query: 1 MKQLHNKVNIVPVIAKADCLTRKEI----QRLKKKVMDEIK--QNGITIYPLPDCDSDED 54
+ +LH ++ K + I LK K+ +E ++ + Y +P +D
Sbjct: 408 VNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 55 -----ED---YK------EQVRQLKEAVPFAVCGANTVLEVG--GNKVRGRQYPWGVVEV 98
D Y + + + F L+ K+R W
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLDFRFLEQKIRHDSTAWNA--- 516
Query: 99 ENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPVPKRTVSLTEDSKPTA 158
++ +Q L+ Y+ Y + P +R V+ D P
Sbjct: 517 -----------SGSILNTLQQLKF------YKPY----ICDNDPKYERLVNAILDFLPKI 555
Query: 159 N-NL---------------EKDRILQEKEAELQR 176
NL E + I +E ++QR
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 27.9 bits (61), Expect = 2.4
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 116 HMQDLQEVTQEIHYENYRS------ERLVKGVPVPKRTVSLTEDS-KPTANNLEKDRILQ 168
H D + T E Y Y+ + V +D K + E D I+
Sbjct: 5 HHMDFE--TGEHQY-QYKDILSVFEDAFVDNFDCKD-----VQDMPKSILSKEEIDHIIM 56
Query: 169 EKEAELQ--RMQEMIAKMQAQMQQA 191
K+A R+ + Q +M Q
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQK 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.038
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 18/56 (32%)
Query: 8 VNI-VP----VIA---KA-DCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDED 54
VN V V A +A D +T V++ IK I I L S E+
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVT---------NVLNFIKLQKIDIIELQKSLSLEE 1890
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone
reductase, flavodoxin, oligomerization, flavoprotein,
oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis}
PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Length = 174
Score = 29.5 bits (67), Expect = 0.39
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 41 ITIYPLPDCDSDEDEDYKEQVRQLKEAV 68
++ + LP + + ++ +V++LK+ V
Sbjct: 34 LSEFVLPVFNGEAEQSELLKVQELKQRV 61
>1wjx_A Small protein B, SSRA-binding protein; RNA binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.70A {Thermus
thermophilus} SCOP: b.111.1.1 PDB: 3iz4_B 2czj_A*
Length = 122
Score = 29.0 bits (66), Expect = 0.42
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 20 LTRKEIQRLKKKVMDEIKQNGITIYPL 46
L + E++RL KV +Q G+T+ PL
Sbjct: 80 LHKHELRRLLGKV----EQKGLTLVPL 102
>1j1h_A Small protein B; SMPB, SSRA associated protein, OB fold, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Thermus thermophilus} SCOP:
b.111.1.1 PDB: 4abr_2* 3iyq_B 3iyr_B
Length = 144
Score = 28.2 bits (64), Expect = 0.88
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 20 LTRKEIQRLKKKVMDEIKQNGITIYPL 46
L + E++RL KV +Q G+T+ PL
Sbjct: 81 LHKHELRRLLGKV----EQKGLTLVPL 103
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure
initiative, structural genomics, midwest for structural
genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Length = 382
Score = 28.9 bits (65), Expect = 1.1
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 17 ADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQ 63
D + ++I+ + K M+E G + D+D+ Y +++
Sbjct: 236 RDAILDEKIRAVVKGAMEES---GAVLIKRYGFDADKHAAYIQKILG 279
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 28.6 bits (63), Expect = 1.4
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 109 LRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPVPKRTVSLTEDSKPTANNLEKDRILQ 168
++ L + +L T+ + R + +V + R + L K ++LQ
Sbjct: 307 VQHTLTSVTDELAVATEMVF----RRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQ 362
Query: 169 EKEAELQRMQEMIAKMQAQ 187
E LQ AK+QAQ
Sbjct: 363 EALQGLQVALCSQAKLQAQ 381
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 28.4 bits (64), Expect = 1.6
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 92 PWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVPVPKRTVSLT 151
PW VVE + + T R +L + + + + + V
Sbjct: 209 PWYVVEGADERYRALTVGRILL-------EGLQAALATKERAKRQPHAAPLVSSLDNRGL 261
Query: 152 EDSKPTANNLEKDRILQEKEAELQRMQEMIAKMQAQMQQ 190
DS L+KD + +L Q +A + +
Sbjct: 262 LDSLDLGQYLDKD----AYKEQLAAEQARLAGLIRDKRF 296
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.2
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 29/58 (50%)
Query: 24 EIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVP-FAVCGANTVLE 80
E Q LKK Q + +Y D + P A+ +E
Sbjct: 18 EKQALKK------LQASLKLYA-DD------------------SAPALAI---KATME 47
>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA
complex, RNA binding protein/RNA complex; 3.20A {Aquifex
aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A 1zc8_K
Length = 156
Score = 27.1 bits (61), Expect = 3.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 20 LTRKEIQRLKKKVMDEIKQNGITIYPL 46
L ++EI RL KV ++ G TI PL
Sbjct: 87 LHKREIMRLYGKV----QEKGYTIIPL 109
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase;
BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A
4g0b_A
Length = 439
Score = 27.4 bits (61), Expect = 3.4
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 12 PVIAKADCLTRKEIQRLKKKVMDEIKQNGITIY 44
LTR++I LK K ++ + Y
Sbjct: 228 ETAVSIFKLTREQISALKAKSKEDGNTISYSSY 260
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; NMR {Nitrosomonas europaea} SCOP:
d.375.1.1
Length = 109
Score = 26.4 bits (58), Expect = 3.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 25 IQRLKKKVMDEIKQNGITIYPLPDCD 50
++ +V++ IKQNG IY + C+
Sbjct: 82 SEKAPDEVIEAIKQNGYFIYKMEGCN 107
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Length = 241
Score = 27.2 bits (61), Expect = 3.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 30 KKVMDEIKQNGITIYPLP 47
+ + + + IT+ PLP
Sbjct: 78 RTLTKDFEDGVITLLPLP 95
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 27.0 bits (60), Expect = 4.2
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 162 EKDRILQEKEAELQRMQEMIAKMQAQMQQAQS 193
E++R ++EK L +++ I+ ++ +M++
Sbjct: 86 EQERQIREKLDFLSALEQTISLVKKRMKRQME 117
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 25.6 bits (57), Expect = 5.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 171 EAELQRMQEMIAKMQAQMQQA 191
E Q+ I ++Q ++Q
Sbjct: 25 AVEAANYQDTIGRLQDEIQNM 45
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase
activating factor-I, PPAF-I, serine proteas hydrolase;
HET: NAG; 1.70A {Holotrichia diomphalia}
Length = 278
Score = 26.5 bits (59), Expect = 5.5
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 72 VCGANTVLE--VGGNKVRGRQYPW 93
CG + + G+ ++PW
Sbjct: 13 DCGYQVEADKILNGDDTVPEEFPW 36
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.30A {Streptococcus mutans}
Length = 192
Score = 26.2 bits (58), Expect = 6.1
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 41 ITIYPLPDCDSDEDEDYKEQVRQLKEAV 68
++ +P + D + +V +E V
Sbjct: 38 LSYDRVPFFNQDLETSVHPEVAHAREEV 65
>2f99_A Aklanonic acid methyl ester cyclase, AKNH;
anthracycline,polyketide cyclase,stereoselectivity,
aklavino biosynthetic protein; HET: AKV; 1.90A
{Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Length = 153
Score = 25.6 bits (56), Expect = 7.5
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 55 EDYKEQVRQLKEAVPFAVCGANTVLEVGGNKVRGR 89
E + V +K+ +E + VR R
Sbjct: 55 ELFAINVAWVKKTFSEEARLEEVGIEERADWVRAR 89
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 7.5
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 12/43 (27%)
Query: 162 EKDRILQEKEAELQ------------RMQEMIAKMQAQMQQAQ 192
E D + E E + R E + K + + A
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 26.4 bits (59), Expect = 7.9
Identities = 7/52 (13%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 142 PVPKRTVSLTEDSKPTANNLEKDRILQEKEAELQR--MQEMIAKMQAQMQQA 191
+ K + + + E K +++ + Q+++ +M+ +M++A
Sbjct: 587 TINKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEA 638
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 25.0 bits (55), Expect = 8.0
Identities = 2/19 (10%), Positives = 9/19 (47%)
Query: 174 LQRMQEMIAKMQAQMQQAQ 192
++ ++ M+ + Q +
Sbjct: 5 FSQLGGLLDGMKKEFSQLE 23
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 25.8 bits (57), Expect = 8.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 52 DEDEDYKEQVRQLKEAVPFAVCGANTVLEVG 82
D DYK+ + E + L++
Sbjct: 15 RADVDYKKWSDFIIEKCVENNLVFDDYLDLA 45
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 26.0 bits (58), Expect = 8.1
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 129 YENYRSERLV----KGVPVPKR------T-VSLTEDSKPTANNLEKDRILQEKEAELQRM 177
Y +SE +V K KR T +L + + + RI++E E L+R+
Sbjct: 57 YGFGQSEEIVGKAIKEYM--KRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRL 114
Query: 178 Q 178
Q
Sbjct: 115 Q 115
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 25.7 bits (56), Expect = 8.3
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 23 KEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLK 65
+LK V+ IK I +P + ++ K+ V+ ++
Sbjct: 12 SNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVR 54
>2pfy_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Length = 301
Score = 26.1 bits (58), Expect = 8.6
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 15 AKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAV 68
AKA+ + + +++ D + +NG+++ PLP + ++L+
Sbjct: 234 AKAEIRGWQTARAKTRELTDTLARNGMSVEPLPP----------QLAKELQAIG 277
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase,
hneil1 ortholog, DNA lesion, thymine glycol zincless
finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga
mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Length = 295
Score = 26.1 bits (58), Expect = 8.9
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 16 KADCLTRKEIQRLK---KKVMDE-IKQNGITI 43
LT +EI+ L K N I
Sbjct: 190 LGSNLTDQEIENLWYWIKYETKLAYDSNHIGY 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,917,947
Number of extensions: 170621
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 83
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.0 bits)