RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14699
(195 letters)
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase
B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 156
Score = 28.8 bits (64), Expect = 0.24
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 28 LKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVP-------FAVCGANTVLE 80
LK+++++ +KQ G D D+DY + G+ +
Sbjct: 15 LKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQ 74
Query: 81 VGGNKVRGRQYPWGVVEVENPEHCDFTK 108
+ NKV G + + + +
Sbjct: 75 IAANKVPGAR----CALAWSVQTAALAR 98
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit
{Klebsiella pneumoniae [TaxId: 573]}
Length = 113
Score = 27.0 bits (60), Expect = 0.83
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 113 LVTHMQDLQE------VTQEIHYENYRS-----ERLVKGVPVPKR 146
+ L + R+ +LVK +P+ +R
Sbjct: 68 IALTHAQLPADAPLATGHVTDSDDQLRTLGANAGQLVKVLPLSER 112
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 27.1 bits (60), Expect = 1.4
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 17/60 (28%)
Query: 55 EDYKEQVRQLKEAVPFAVCGANTV-LEVGGNKVRGRQYPWGVVEVENPEHCDFTKLRTML 113
E ++ +R K+ G + ++ WG +E + DF+ +
Sbjct: 29 ETFENDLRWAKQN------GFYAITVDF----------WWGDMEKNGDQQFDFSYAQRFA 72
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 27.0 bits (58), Expect = 1.5
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 7 KVNIVPVIAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKE 66
+ + P + R+E+ R+ K +M + +E + + ++++LKE
Sbjct: 396 RAALRPRAGDDGLVRREEVARVVKGLM----------------EGEEGKGVRNKMKELKE 439
Query: 67 AVPFAV 72
A +
Sbjct: 440 AACRVL 445
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 201
Score = 26.4 bits (58), Expect = 1.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 13 VIAKADCLTRKEIQRLKKK 31
V+ KA + ++ LK K
Sbjct: 178 VLTKALRVEAGVVELLKSK 196
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 146
Score = 26.2 bits (57), Expect = 2.0
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 30 KKVMDEIKQNGIT-IYPLPDCDSDEDEDYKEQVRQLKEAV 68
K ++ + G + D D + E ++ +A+
Sbjct: 103 KDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDAL 142
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 25.6 bits (55), Expect = 3.6
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 31 KVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVP 69
++ +K G L + + + V+++ +VP
Sbjct: 166 IIIPTLKSRGYEFVTLTELFTLKGVPIDPSVKRMYNSVP 204
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 190
Score = 24.8 bits (53), Expect = 6.7
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 14 IAKADCLTRKEIQRLKKKVMDEIKQNGITIYPLPDC 49
+ ++ R+EIQ+ K + + +
Sbjct: 16 LKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKI 51
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.6 bits (53), Expect = 8.6
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 90 QYPWGVVEVENPEHCDFTKLRTMLVTHMQDLQEVTQEIHYENYRSERLVKGVP 142
E ++R + + + +E+ ENY+ R G P
Sbjct: 188 VKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYP 240
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 24.7 bits (52), Expect = 8.7
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 16/53 (30%)
Query: 20 LTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAV 72
+ R+E+ +L +V+ D+ + K++ +LK+
Sbjct: 417 VKREELAKLINEVIAG----------------DKGKKMKQKAMELKKKAEENT 453
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 24.5 bits (52), Expect = 8.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 28 LKKKVMDEIKQNGITIYPLPDCDSDEDEDY 57
L +K++D +K G + +C D E++
Sbjct: 188 LTQKLIDTLKSKGYRAVTVGECLGDAPENW 217
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 24.7 bits (52), Expect = 8.9
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 18/53 (33%)
Query: 20 LTRKEIQRLKKKVMDEIKQNGITIYPLPDCDSDEDEDYKEQVRQLKEAVPFAV 72
+ +EI++ K +MD+ D ++V+++KE AV
Sbjct: 408 VAAEEIEKGLKDLMDK------------------DSIVHKKVQEMKEMSRNAV 442
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 706,845
Number of extensions: 33023
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 40
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)