Query psy147
Match_columns 378
No_of_seqs 137 out of 231
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pk8_A RAT synapsin I; ATP bin 17.8 27 0.00091 35.4 0.0 16 20-37 5-20 (422)
2 1jb0_J Photosystem 1 reaction 9.3 1.1E+02 0.0038 21.5 1.1 26 198-224 12-37 (41)
3 1jdm_A Sarcolipin; helix, memb 9.1 2.1E+02 0.0071 18.8 2.3 24 339-362 6-29 (31)
4 2lx0_A Membrane fusion protein 7.8 3.5E+02 0.012 17.6 2.9 17 290-306 14-30 (32)
5 4aq5_B Acetylcholine receptor 6.8 6.7E+02 0.023 25.1 6.1 44 193-240 246-289 (493)
6 3rhw_A Avermectin-sensitive gl 6.1 1.3E+03 0.045 21.3 7.5 39 194-235 219-257 (347)
7 1bin_A Leghemoglobin A; heme, 5.5 6E+02 0.02 20.0 4.0 36 203-240 105-140 (143)
8 1zce_A Hypothetical protein AT 5.3 40 0.0014 29.8 -3.5 43 136-179 93-135 (155)
9 4aq5_C Acetylcholine receptor 5.3 4.7E+02 0.016 26.5 3.9 79 195-280 253-331 (522)
10 3o71_B Peptide of deleted in c 5.2 1.9E+02 0.0064 18.5 0.6 9 189-197 8-16 (27)
No 1
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=17.77 E-value=27 Score=35.37 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCC
Q psy147 20 LKQRVFHKDGPAMTSTPY 37 (378)
Q Consensus 20 ~~~r~~~~d~~am~~~p~ 37 (378)
||+|. ||-|-|..-|.
T Consensus 5 l~rr~--sd~~~~~~lp~ 20 (422)
T 1pk8_A 5 LRRRL--SDSNFMANLPN 20 (422)
T ss_dssp ------------------
T ss_pred hhhhh--ccchhhhcCCc
Confidence 67999 99999965563
No 2
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=9.29 E-value=1.1e+02 Score=21.49 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCccch
Q psy147 198 PTMAYVTYILLAGLVLGIQNRFSPEKL 224 (378)
Q Consensus 198 PlMafvTYILL~g~~~G~~g~FsPE~L 224 (378)
|+++.+-..+++|+...++ ||-|+.|
T Consensus 12 PVla~~w~~~tAg~lIEiN-RffPD~L 37 (41)
T 1jb0_J 12 PVLAAIWMTITAGILIEFN-RFYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHSCCCS
T ss_pred hHHHHHHHHHHHHHHHHHH-HhCcccc
Confidence 7788888888888887775 5777766
No 3
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=9.07 E-value=2.1e+02 Score=18.83 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=16.8
Q ss_pred eeeehhhHHHHHHHHHHHHhhhcc
Q psy147 339 RRMYFLVFVALSQPVLMLWVSYHL 362 (378)
Q Consensus 339 rr~YfLf~iAv~Q~~lm~wLt~~l 362 (378)
+.+++=|-+.++-.++||.|.|..
T Consensus 6 qELf~NFt~vLI~vlLi~llVrsy 29 (31)
T 1jdm_A 6 RELFLNFTIVLITVILMWLLVRSY 29 (31)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555667778888998887653
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=7.78 E-value=3.5e+02 Score=17.59 Aligned_cols=17 Identities=24% Similarity=0.424 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy147 290 ISYCGLALAFFMMRSLK 306 (378)
Q Consensus 290 llY~~~a~~fFLlRSLK 306 (378)
.+-+++|++|+|.+-|.
T Consensus 14 alltflafgfwlfkylq 30 (32)
T 2lx0_A 14 ALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34567788888887664
No 5
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=6.81 E-value=6.7e+02 Score=25.11 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=29.3
Q ss_pred CccccchhHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHHHHHHH
Q psy147 193 PDLYIPTMAYVTYILLAGLVLGIQNRFSPEKLGMHASTATGCALVELV 240 (378)
Q Consensus 193 PDLYIPlMafvTYILL~g~~~G~~g~FsPE~Lg~~aS~al~~~~lEv~ 240 (378)
=.+|||.+. ++.+-+.++.+-.. ++|.++...+..|+..++-..
T Consensus 246 i~l~iP~~l-iv~Ls~lsF~Lp~~---s~eRvsLgiT~LLt~tvfl~~ 289 (493)
T 4aq5_B 246 VYTIVPCIL-ISILAILVFYLPPD---AGEKMSLSISALLALTVFLLL 289 (493)
T ss_dssp TTTHHHHHH-HHHHHHHHHHSTTT---CGGGGTHHHHHHHHHHHHHHH
T ss_pred ehhhhhHHH-HHHHHHhEEecCCC---CCceEEehHHHHHHHHHHHHH
Confidence 458999865 44555666777655 589888777777666554443
No 6
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=6.08 E-value=1.3e+03 Score=21.32 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=17.1
Q ss_pred ccccchhHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHH
Q psy147 194 DLYIPTMAYVTYILLAGLVLGIQNRFSPEKLGMHASTATGCA 235 (378)
Q Consensus 194 DLYIPlMafvTYILL~g~~~G~~g~FsPE~Lg~~aS~al~~~ 235 (378)
.+|||.+. ++.+-+.++.+.... .||.++...+..|+..
T Consensus 219 ~l~iP~~l-i~~ls~~sF~lp~~~--~~~Rv~lgit~lLt~t 257 (347)
T 3rhw_A 219 QLYIPSCM-LVIVSWVSFWFDRTA--IPARVTLGVTTLLTMT 257 (347)
T ss_dssp HTHHHHHH-HHHHHHTTTTSCTTC--HHHHHHHHHHHHHHHH
T ss_pred EeehhHHH-HHHHhheEEeccCCC--CcceEEEEeehHHHHH
Confidence 36777653 333333344433221 1555554444444433
No 7
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=5.50 E-value=6e+02 Score=20.01 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhcCCCCccchHHHHHHHHHHHHHHHH
Q psy147 203 VTYILLAGLVLGIQNRFSPEKLGMHASTATGCALVELV 240 (378)
Q Consensus 203 vTYILL~g~~~G~~g~FsPE~Lg~~aS~al~~~~lEv~ 240 (378)
+.=.|+..+...+...|+||.. .++..+.+.+.+++
T Consensus 105 ~~~~Ll~~l~~~lg~~~t~e~~--~AW~~~~~~ia~~l 140 (143)
T 1bin_A 105 VKEALLKTIKAAVGDKWSDELS--RAWEVAYDELAAAI 140 (143)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHH
Confidence 4445666666656677999863 45655555555544
No 8
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=5.32 E-value=40 Score=29.84 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=37.4
Q ss_pred ccccccccccCceeeeeeChHHHHHhhceeecccccCCceeeec
Q psy147 136 AGGQMLGQVGGLKYYFAVDTRYVMKKLKLILFPFLHKEWSVQYE 179 (378)
Q Consensus 136 n~~ry~~~~~~LkyYFaVdnsYV~~KL~LlLFPf~hk~Wsr~~~ 179 (378)
.|.+-+ +.+.||......+..++++=+|-++|-+..+|....+
T Consensus 93 ~~~~pv-tL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~ 135 (155)
T 1zce_A 93 DMPQPV-SLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCR 135 (155)
T ss_dssp EEEEEE-EHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHH
T ss_pred ccCCcc-cHHHHhcCCCcccCeeeeccCCCceeeCHHHHHHHHH
Confidence 456667 7889999999999999999999999999999987654
No 9
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=5.25 E-value=4.7e+02 Score=26.53 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeeeeecccchhhHHHH
Q psy147 195 LYIPTMAYVTYILLAGLVLGIQNRFSPEKLGMHASTATGCALVELVLQYIFLYVTNIQSNLKTWDLLSYSGYKYVGIILA 274 (378)
Q Consensus 195 LYIPlMafvTYILL~g~~~G~~g~FsPE~Lg~~aS~al~~~~lEv~ilkl~lYll~i~~~~~~lDLlAysGYKfV~ii~~ 274 (378)
+|||. .+++.+-+.++.+-.. ++|.++...+..|+..++-.++-.. +=..+..++.+|..-...+-+|.+++.
T Consensus 253 l~iP~-~liv~Ls~lsF~Lp~d---~~eRisLgIT~LLt~tvfl~~v~~~---LP~tS~~vPlI~~y~~~~m~lv~lSll 325 (522)
T 4aq5_C 253 FITPC-VLISFLAALAFYLPAE---SGEKMSTAICVLLAQAVFLLLTSQR---LPETALAVPLIGKYLMFIMSLVTGVVV 325 (522)
T ss_dssp HHHHH-HHHHHHHHHHTTHHHH---HTTCHHHHHHHHHHHHHHHHHHHHH---HHHHTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhHH-HHHHHHHHheeecCCC---cCceEEehHHHHHHHHHHHHHHHhc---CCcccCCccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q psy147 275 ILVGQL 280 (378)
Q Consensus 275 ll~~~l 280 (378)
..+-.+
T Consensus 326 ~tviVl 331 (522)
T 4aq5_C 326 NCGIVL 331 (522)
T ss_dssp HHHHHH
T ss_pred HHheEE
No 10
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=5.22 E-value=1.9e+02 Score=18.54 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=0.0
Q ss_pred cCCCCcccc
Q psy147 189 EINAPDLYI 197 (378)
Q Consensus 189 DiNAPDLYI 197 (378)
|+--|||.|
T Consensus 8 Dlkppdlwi 16 (27)
T 3o71_B 8 DLRPPDLWI 16 (27)
T ss_pred CCCCcceee
Done!