Query psy147
Match_columns 378
No_of_seqs 137 out of 231
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 18:23:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 8.6 1.9E+02 0.014 17.3 3.5 19 289-307 13-31 (32)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 8.3 1E+02 0.0072 18.5 2.0 14 201-214 2-15 (30)
3 d1zcea1 b.122.1.8 (A:2-147) Hy 7.8 11 0.00082 30.8 -3.5 44 135-179 91-134 (146)
4 d1oede_ f.36.1.1 (E:) Acetylch 7.7 1.1E+02 0.0083 25.0 3.0 42 194-238 7-48 (260)
5 d1jb0j_ f.23.18.1 (J:) Subunit 6.2 85 0.0062 20.4 1.0 26 198-224 12-37 (41)
6 d1xq5a_ a.1.1.2 (A:) Hemoglobi 5.9 2.4E+02 0.017 21.0 3.9 36 203-240 102-137 (142)
7 d1d5ya1 a.4.1.8 (A:3-56) Rob t 5.2 86 0.0062 20.0 0.6 32 131-163 10-41 (54)
8 d1q90m_ f.23.25.1 (M:) PetM su 5.2 3.4E+02 0.025 16.4 3.4 17 288-304 13-29 (34)
9 d1u5sb1 g.39.1.3 (B:72-102) Pi 4.7 99 0.0072 19.0 0.6 15 17-35 12-26 (31)
10 d1tf4a2 b.2.2.2 (A:461-605) En 4.5 1E+02 0.0075 24.4 0.7 13 143-155 35-47 (145)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.62 E-value=1.9e+02 Score=17.33 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy147 289 SISYCGLALAFFMMRSLKS 307 (378)
Q Consensus 289 ~llY~~~a~~fFLlRSLK~ 307 (378)
++++....-.+|-.+|+|.
T Consensus 13 alffgiavgiifaiksikl 31 (32)
T d2e74e1 13 ALFFGIAVGIIFAIKSIKL 31 (32)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhheeeEEEEee
Confidence 3433333335678888874
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.30 E-value=1e+02 Score=18.46 Aligned_cols=14 Identities=14% Similarity=0.536 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhh
Q psy147 201 AYVTYILLAGLVLG 214 (378)
Q Consensus 201 afvTYILL~g~~~G 214 (378)
--+|||++.+.+.|
T Consensus 2 e~i~yv~ifac~i~ 15 (30)
T d2axtt1 2 ETITYVFIFACIIA 15 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHH
Confidence 34666666655444
No 3
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.82 E-value=11 Score=30.79 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=38.9
Q ss_pred hccccccccccCceeeeeeChHHHHHhhceeecccccCCceeeec
Q psy147 135 SAGGQMLGQVGGLKYYFAVDTRYVMKKLKLILFPFLHKEWSVQYE 179 (378)
Q Consensus 135 ~n~~ry~~~~~~LkyYFaVdnsYV~~KL~LlLFPf~hk~Wsr~~~ 179 (378)
+.|.+-+ +.+.||-..+..+.-+++.=||-+.|-+.++|....+
T Consensus 91 ~~~~~~V-sL~eLK~~~~L~~m~Lvk~~RLSV~PVt~~ew~~I~~ 134 (146)
T d1zcea1 91 CDMPQPV-SLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCR 134 (146)
T ss_dssp EEEEEEE-EHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHH
T ss_pred cccCcee-eHHHhhcCcchhhCcchhcCccCeEecCHHHHHHHHH
Confidence 4577778 8899999999999999999999999999999997654
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.71 E-value=1.1e+02 Score=24.97 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=25.4
Q ss_pred ccccchhHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHHHHH
Q psy147 194 DLYIPTMAYVTYILLAGLVLGIQNRFSPEKLGMHASTATGCALVE 238 (378)
Q Consensus 194 DLYIPlMafvTYILL~g~~~G~~g~FsPE~Lg~~aS~al~~~~lE 238 (378)
.||||.. +++-+-+.++.+-... ++|-++...+..|+..++-
T Consensus 7 ~lilP~~-li~~ls~~~F~lp~~~--~g~Rv~l~it~lLs~~~~~ 48 (260)
T d1oede_ 7 NIIAPCV-LISSLVVLVYFLPAQA--GGQKCTLSISVLLAQTIFL 48 (260)
T ss_dssp HHHTHHH-HHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHheEecCCC--CCCcEEeehhHHHHHHHHH
Confidence 3678864 4445556666665542 2688877777666665543
No 5
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=6.18 E-value=85 Score=20.39 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCccch
Q psy147 198 PTMAYVTYILLAGLVLGIQNRFSPEKL 224 (378)
Q Consensus 198 PlMafvTYILL~g~~~G~~g~FsPE~L 224 (378)
|+.+.+-+.+++|+...++ ||=|+.|
T Consensus 12 PVla~~w~~~tAG~lIEiN-RFfPD~L 37 (41)
T d1jb0j_ 12 PVLAAIWMTITAGILIEFN-RFYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHH-hhCchhh
Confidence 6677777777777776664 6666655
No 6
>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca flavescens) [TaxId: 8167]}
Probab=5.90 E-value=2.4e+02 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhcCCCCccchHHHHHHHHHHHHHHHH
Q psy147 203 VTYILLAGLVLGIQNRFSPEKLGMHASTATGCALVELV 240 (378)
Q Consensus 203 vTYILL~g~~~G~~g~FsPE~Lg~~aS~al~~~~lEv~ 240 (378)
+.=+|+..+...+.+.|+||. ..|+.-+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~--~~AW~k~~~~v~~~l 137 (142)
T d1xq5a_ 102 LSHCILVLLAVKFPKDFTPEV--HISYDKFFSALARAL 137 (142)
T ss_dssp HHHHHHHHHHHHCGGGCCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCHHH--HHHHHHHHHHHHHHH
Confidence 344566666777778899995 456666666665554
No 7
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.23 E-value=86 Score=20.00 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=27.2
Q ss_pred HHHHhccccccccccCceeeeeeChHHHHHhhc
Q psy147 131 NIIESAGGQMLGQVGGLKYYFAVDTRYVMKKLK 163 (378)
Q Consensus 131 s~vq~n~~ry~~~~~~LkyYFaVdnsYV~~KL~ 163 (378)
.|+++|+++=+ +++.|-..+.++.+|..+..+
T Consensus 10 ~yi~~~~~~~i-tl~~lA~~~~~S~~~l~r~Fk 41 (54)
T d1d5ya1 10 IWLEGHLDQPL-SLDNVAAKAGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHTTSSSSC-CCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHccCCCC-CHHHHHHHHCcCHHHHHHHHH
Confidence 48899988777 889999999999999887755
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.20 E-value=3.4e+02 Score=16.43 Aligned_cols=17 Identities=35% Similarity=0.794 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy147 288 VSISYCGLALAFFMMRS 304 (378)
Q Consensus 288 ~~llY~~~a~~fFLlRS 304 (378)
+..-.+.+|.+|.|+|-
T Consensus 13 ig~tl~glaigfvllrv 29 (34)
T d1q90m_ 13 VGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheee
Confidence 34455677888888874
No 9
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.74 E-value=99 Score=18.98 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=11.7
Q ss_pred cccccccccccCCCCCCCC
Q psy147 17 RKLLKQRVFHKDGPAMTST 35 (378)
Q Consensus 17 ~~~~~~r~~~~d~~am~~~ 35 (378)
||++..|| |+|||-+
T Consensus 12 ~~PI~~~~----vtAlgk~ 26 (31)
T d1u5sb1 12 RRPIEGRV----VNAMGKQ 26 (31)
T ss_dssp TEECCSCE----ECCTTSB
T ss_pred CCchhhhH----hhhhccc
Confidence 66666777 8999976
No 10
>d1tf4a2 b.2.2.2 (A:461-605) Endo/exocellulase:cellobiose E-4, C-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Probab=4.53 E-value=1e+02 Score=24.43 Aligned_cols=13 Identities=31% Similarity=0.905 Sum_probs=10.5
Q ss_pred cccCceeeeeeCh
Q psy147 143 QVGGLKYYFAVDT 155 (378)
Q Consensus 143 ~~~~LkyYFaVdn 155 (378)
+--++||||++|-
T Consensus 35 ~~l~~RYyft~d~ 47 (145)
T d1tf4a2 35 DKGTFRYWFTLDE 47 (145)
T ss_dssp CSEEEEEEEECCT
T ss_pred CCeEEEEEEECCC
Confidence 4457999999996
Done!