RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy147
(378 letters)
>gnl|CDD|217776 pfam03878, YIF1, YIF1. YIF1 (Yip1 interacting factor) is an
integral membrane protein that is required for membrane
fusion of ER derived vesicles. It also plays a role in
the biogenesis of ER derived COPII transport vesicles.
Length = 240
Score = 237 bits (606), Expect = 5e-77
Identities = 114/251 (45%), Positives = 166/251 (66%), Gaps = 19/251 (7%)
Query: 116 ISNPLVSNVMKEYGKNIIESAGGQMLGQ-------VGGLKYYFAVDTRYVMKKLKLILFP 168
+ P+ + + +YG++I + G + + + V LKYYFAVDT YV KLKL+LFP
Sbjct: 2 LRQPMGNAMAMQYGQSIA-NQGKEYVEKNFSRWVSVSKLKYYFAVDTAYVGNKLKLLLFP 60
Query: 169 FLHKEWSVQYEQDQPVQPRYEINAPDLYIPTMAYVTYILLAGLVLGIQNRFSPEKLGMHA 228
+LH++W Y+++ P+ PRY++NAPDLYIPTMA++TYILLAGL+LG+Q RFSPE LG+ A
Sbjct: 61 YLHRDWERIYDRESPLPPRYDVNAPDLYIPTMAFITYILLAGLLLGLQGRFSPELLGLQA 120
Query: 229 STATGCALVELVLQYIFLYVTNIQSNLKTWDLLSYSGYKYVGIILAILVGQLFQWTGYLV 288
S+A +E++ + LY+ N+ S+L T DLL+YSGYK+VG+ILA+L LF GY +
Sbjct: 121 SSALAWVFLEVLALKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAVLTKLLFGPYGYYL 180
Query: 289 SISYCGLALAFFMMRSLKSRVMETPVQHGGVAQTDIYGQPVPPQMLQGTKRRMYFLVFVA 348
++Y LA FF++RSLK+ ++ A YG PV K+R+YFL F+A
Sbjct: 181 VLAYTCLATGFFLLRSLKTALLS--------APAAAYGAPVIS---SQRKKRLYFLFFIA 229
Query: 349 LSQPVLMLWVS 359
QP+ + W+S
Sbjct: 230 AVQPLFLYWLS 240
>gnl|CDD|227524 COG5197, COG5197, Predicted membrane protein [Function unknown].
Length = 284
Score = 148 bits (375), Expect = 4e-42
Identities = 76/213 (35%), Positives = 112/213 (52%), Gaps = 11/213 (5%)
Query: 147 LKYYFAVDTRYVMKKLKLILFPFLHKEWSVQYEQDQPVQPRYEINAPDLYIPTMAYVTYI 206
+ YF V RYV+ KLKLILFPFL+K W + + + PR ++N+PD+Y+P M +VTYI
Sbjct: 83 ISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYI 142
Query: 207 LLAGLVLGIQNRFSPEKLGMHASTATGCALVELVLQYIFLYVTNIQSNLKTWDLLSYSGY 266
LL G++ F+PE LG S+ V+L++ + LY+ DLL+YSGY
Sbjct: 143 LLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGY 202
Query: 267 KYVGIILAILVGQLFQWTGYLVSISYCGLALAFFMMRSLKSRVMETPVQHGGVAQTDIYG 326
K+V +ILA L+ + + I Y +A F++RSLK V+ + +
Sbjct: 203 KFVPLILAQLLKNVTMPFVLNILIFYLYIAFGVFLLRSLKFNVLSRSGAEIHASISK--- 259
Query: 327 QPVPPQMLQGTKRRMYFLVFVALSQPVLMLWVS 359
KRR YFL + + Q VLM +S
Sbjct: 260 --------STRKRRNYFLFVIFIWQNVLMWLLS 284
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 35.1 bits (81), Expect = 0.059
Identities = 19/108 (17%), Positives = 23/108 (21%), Gaps = 2/108 (1%)
Query: 4 QQGGGGQFPQQGPRKLLKQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQDAT 63
Q G Q PQ P ++ Q+ A P P PP
Sbjct: 199 QPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPP 258
Query: 64 PQFQSANMYNTYNAPNQFQPQ--LQPQQQFAQTPFMMPQQATNFPGIP 109
P Q PQ P Q +P
Sbjct: 259 PPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLP 306
Score = 31.7 bits (72), Expect = 0.68
Identities = 27/120 (22%), Positives = 33/120 (27%), Gaps = 13/120 (10%)
Query: 1 MNFQQGGGGQFPQQGPRKLLKQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQ 60
QQ Q P Q+V + P + Q P PPG+ PQ + + Q
Sbjct: 161 AQLQQRQQAPQLPQPP-----QQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQ 215
Query: 61 DAT----PQFQSANMYNTYNAPNQFQP----QLQPQQQFAQTPFMMPQQATNFPGIPAGY 112
P A P Q P Q Q P P Q P P
Sbjct: 216 PQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275
Score = 31.7 bits (72), Expect = 0.78
Identities = 16/95 (16%), Positives = 21/95 (22%)
Query: 1 MNFQQGGGGQFPQQGPRKLLKQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQ 60
+ Q G P Q+ P P P P L
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQP 302
Query: 61 DATPQFQSANMYNTYNAPNQFQPQLQPQQQFAQTP 95
P Q + QL QQ+ A +
Sbjct: 303 QLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQ 337
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 32.7 bits (75), Expect = 0.27
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 30 PAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAPNQFQPQLQPQQ 89
P + S P +P P S+ P + + P + N P P P Q
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDT--PPPSPESPTNPSPPPGPAAPPPPPVQ 249
Query: 90 QFAQTPFMMP--QQATNFPGIPAGYTD 114
Q P A+ P G T
Sbjct: 250 QVPPLSTAKPTPPSASATPAPIGGITL 276
>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure
with malate dehydrogenase enzymatic activity. The
LDH-like MDH proteins have a lactate
dehyhydrogenase-like (LDH-like) structure and malate
dehydrogenase (MDH) enzymatic activity. This subgroup is
composed of some archaeal LDH-like MDHs that prefer
NADP(H) rather than NAD(H) as a cofactor. One member,
MJ0490 from Methanococcus jannaschii, has been observed
to form dimers and tetramers during crystalization,
although it is believed to exist primarilly as a
tetramer in solution. In addition to its MDH activity,
MJ0490 also possesses
fructose-1,6-bisphosphate-activated LDH activity.
Members of this subgroup have a higher sequence
similarity to LDHs than to other MDHs. LDH catalyzes the
last step of glycolysis in which pyruvate is converted
to L-lactate. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate. The
LDH-like MDHs are part of the NAD(P)-binding Rossmann
fold superfamily, which includes a wide variety of
protein families including the NAD(P)- binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenase,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 309
Score = 32.0 bits (73), Expect = 0.40
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 95 PFMMPQ-QATNFPGIP----AGYTDIISNPLVSNVMKEYGKNIIESAGGQMLG 142
M+P +T+ GIP Y D +V V K G+NII GG G
Sbjct: 179 DSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETV-KNAGQNIISLKGGSEYG 230
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 31.6 bits (71), Expect = 0.62
Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 39 TYNPPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAPNQFQ---PQLQPQQQFAQTP 95
TY PP PP + P L F S++ + +AP Q Q QQ Q P
Sbjct: 170 TYIPPNPPREAPAPGL--------PKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNP 221
Query: 96 FMMPQQATNFPGIPAGYTDIISNPLVSNVMKEYGKNIIESAGGQ 139
PQQ + NP E G G Q
Sbjct: 222 AQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQGNQ 265
>gnl|CDD|220533 pfam10034, Dpy19, Q-cell neuroblast polarisation. Dyp-19, formerly
known as DUF2211, is a transmembrane domain family that
is required to orient the neuroblast cells, QR and QL
accurately on the anterior-posterior axis: QL and QR are
born in the same anterior-posterior position, but
polarise and migrate left-right asymmetrically, QL
migrating towards the posterior and QR migrating towards
the anterior. It is also required, with unc-40, to
express mab-5 correctly in the Q cell descendants. The
Dpy-19 protein derives from the C. elegans DUMPY mutant.
Length = 637
Score = 31.5 bits (72), Expect = 0.69
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 238 ELVLQYIFLYVTNIQSNLKTWDLLSYSGYKYVGII---LAILVGQLFQWTGYLVSISYCG 294
E++L ++ I + L Y YV + I++ LF TG L+S S G
Sbjct: 84 EVILAILYRVFRGIMNKLGE------PVYFYVYFVFLLNGIMMTALF-ITGTLLSGSILG 136
Query: 295 LALA---FFMMRSLKSRVMETP 313
L FF +RVM TP
Sbjct: 137 GLLTVLCFFFNHGETTRVMWTP 158
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 30.1 bits (67), Expect = 2.4
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 9 GQFPQQGPRKLLKQRVFHKDGPAMTSTPYQTYNP----PPPPGFSVTPQLNDDWAQDATP 64
P Q P++ + + ++ + Q P P P + Q Q P
Sbjct: 748 IVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 807
Query: 65 QFQSA--NMYNTYNAPNQFQPQL-QPQQQFAQTP 95
Q A Y P QPQ QPQQ A P
Sbjct: 808 QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein. The YppG-like protein family
includes the B. subtilis YppG protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are typically
between 115 and 181 amino acids in length. There are two
completely conserved residues (F and G) that may be
functionally important.
Length = 110
Score = 28.1 bits (63), Expect = 2.7
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 36 PYQTYNPPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAPNQFQPQLQPQQQFAQTP 95
Y N P + PQ Q + P + Q QQQ Q
Sbjct: 9 QYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFM--PPQPQPYPKQSPQQQQPPQFS 66
Query: 96 FMMPQ 100
+ Q
Sbjct: 67 SFLSQ 71
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 29.7 bits (67), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 260 LLSYSGYKYVGIILAILVGQLFQWTGYLVSISYCGLALAFFMMRSLKSR 308
L +Y G G LA V +++ WTG+ V IS A ++ L ++
Sbjct: 380 LFAYLGAALSGYPLA-KVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 29.3 bits (65), Expect = 3.2
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 1 MNFQQGGGGQFPQQGPRKLLKQRVFHKDG--PAMTSTPY-QTYNPPPPPGFSVTPQLNDD 57
+N Q+ G P G R Q H G P + PP PGF+ P + +
Sbjct: 169 INPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQMRPGFNPMPGMPPRPGFNQNPNMMPN 228
Query: 58 WAQDA-TPQFQSANMYNTYNAPN-QFQPQLQPQQQFAQTPFMMPQQA 102
+ PQ N T PN Q +P P Q P M +A
Sbjct: 229 MNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPHMAGPRA 275
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.1 bits (65), Expect = 4.4
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 30 PAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAPNQFQPQLQPQQ 89
PA++ + PP P PQ PQ Q P QPQ P
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQA----PPPPQPQPQ---------PPPPPQPQPPPPP 2935
Query: 90 QFAQTPFMMPQQATNFPGIPAG 111
P + P G P+G
Sbjct: 2936 PPRPQPPLAPTTDPAGAGEPSG 2957
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like
subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was
identified as a novel human bromodomain gene by cDNA
library screening. The Drosophila homologue, Acf1, is
part of the CHRAC (chromatin accessibility complex) and
regulates ISWI-induced nucleosome remodeling.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 115
Score = 27.7 bits (62), Expect = 4.4
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 95 PFMMPQQATNFPGIPAGYTDIISNPLVSNVMKE 127
PF+ P P Y DII P+ +KE
Sbjct: 32 PFLRPVSKIEVPD----YYDIIKKPMDLGTIKE 60
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 28.7 bits (65), Expect = 5.0
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 278 GQLFQWTGYLVSISY--CGLALAFFMMRSLKSRVMETPVQHG 317
G G V ++Y G+ F +MR+L ++ PV
Sbjct: 38 GSAIAMAGPSVLLAYLIAGI-FVFLIMRALGEMLVANPVSGS 78
>gnl|CDD|140204 PTZ00176, PTZ00176, erythrocyte membrane protein 1 (PfEMP1);
Provisional.
Length = 1317
Score = 28.8 bits (64), Expect = 6.5
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 53 QLNDDWAQDATPQFQSANMYNTYNAPNQFQPQLQPQQQFAQTPFMM 98
QL DD+ P + N Y + N+P + PF+M
Sbjct: 1033 QLKDDFISQYLPNTEPNNNYRSGNSPTNTNNTTTSHDNMGEKPFIM 1078
>gnl|CDD|200510 cd11249, Sema_3A, The Sema domain, a protein interacting module, of
semaphorin 3A (Sema3A). Sema3A has been reported to
inhibit the growth of certain experimental tumors and to
regulate endothelial cell migration and apoptosis in
vitro, as well as arteriogenesis in the muscle, skin
vessel permeability, and tumor angiogenesis in vivo. The
function of Sema3A is mediated through receptors
neuropilin-1 (NP1) and plexins, although little is known
about the requirement of specific plexins in its
receptor complex. It is known however that Plexin-A4 is
the receptor for Sema3A in the Toll-like receptor- and
sepsis-induced cytokine storm during immune response.
Sema3A is a member of the Class 3 semaphorin family of
secreted proteins. Semaphorins are regulatory molecules
in the development of the nervous system and in axonal
guidance. They also play important roles in other
biological processes, such as angiogenesis, immune
regulation, respiration systems and cancer. The Sema
domain is located at the N-terminus and contains four
disulfide bonds formed by eight conserved cysteine
residues. It serves as a receptor-recognition and
-binding module.
Length = 493
Score = 28.4 bits (63), Expect = 6.6
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 22 QRVF-----HKDGPAMTSTPYQTYNPPPPP---------GFSVTPQLNDD 57
+RVF H+DGP P+Q P P P GF T L DD
Sbjct: 324 RRVFLGPYAHRDGPNYQWVPFQGRVPYPRPGTCPSKTFGGFDSTKDLPDD 373
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 28.2 bits (63), Expect = 7.2
Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 4/95 (4%)
Query: 12 PQQGPRKLLKQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQDATPQFQSANM 71
P P + +TP + PP F++ Q Q +
Sbjct: 65 PLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQV 124
Query: 72 YNTYNAPNQFQPQLQPQQQFA----QTPFMMPQQA 102
P QP QQ A Q + P
Sbjct: 125 PVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASG 159
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 27.6 bits (62), Expect = 7.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 271 IILAILVGQLFQWTGYLVSISYCGLALAFFM 301
++ I G F SI GL L +
Sbjct: 125 LVKGIFGGFFFIIFNVFFSIGLFGLGLLLAI 155
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1
homolog.
Length = 808
Score = 28.0 bits (62), Expect = 8.9
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 26 HKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAP 78
++ P S + P PP ++ ++D +++ + Q N +T AP
Sbjct: 44 GQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQGDESSSEQQPQNPNSTEPAP 96
>gnl|CDD|220486 pfam09946, DUF2178, Predicted membrane protein (DUF2178). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 111
Score = 26.9 bits (60), Expect = 9.1
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 266 YKYVGIILAILVGQLFQWT----GYLVSISYCGLALAFFMMRSLKSRV 309
Y+ + I++ I++G + W LV++ + + LKSRV
Sbjct: 3 YRLLLILIVIIMGAIVGWAVSSGNPLVAV--LAVIAGILAIYFLKSRV 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.421
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,587,622
Number of extensions: 1883417
Number of successful extensions: 1994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1875
Number of HSP's successfully gapped: 75
Length of query: 378
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 279
Effective length of database: 6,546,556
Effective search space: 1826489124
Effective search space used: 1826489124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)