RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy147
(378 letters)
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 41.3 bits (96), Expect = 4e-04
Identities = 18/110 (16%), Positives = 24/110 (21%), Gaps = 11/110 (10%)
Query: 2 NFQQGGGGQFPQQGPRKLLKQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQD 61
Q G QQ + + Q PA Y PP Q Q
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQ------DPAAAGMSYGQMGMPPQGAVPSMGQ-----QQF 61
Query: 62 ATPQFQSANMYNTYNAPNQFQPQLQPQQQFAQTPFMMPQQATNFPGIPAG 111
TP + + + L +M PQ
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111
Score = 38.3 bits (88), Expect = 0.005
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 3/134 (2%)
Query: 4 QQGGGGQFPQQGPRKLLKQRVFHKDGPAM--TSTPYQTYNPPPPPGFSVTPQLNDDWAQD 61
Q G P Q P + + + G + P Q P +TP Q
Sbjct: 14 LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73
Query: 62 ATPQFQSANMYNTYNAPNQFQPQLQPQQQFAQTPFMMPQQATNFPGIPAGYTDIISNPLV 121
+M+ +N P Q Q + QQ G +
Sbjct: 74 DQATTSMNDMH-LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132
Query: 122 SNVMKEYGKNIIES 135
+ + Y +++
Sbjct: 133 RPMNQLYPIDLLTE 146
Score = 35.6 bits (81), Expect = 0.030
Identities = 14/92 (15%), Positives = 19/92 (20%)
Query: 21 KQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAPNQ 80
K+RV+ + P + Q P +
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64
Query: 81 FQPQLQPQQQFAQTPFMMPQQATNFPGIPAGY 112
Q QL Q A T P Y
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY 96
Score = 31.3 bits (70), Expect = 0.55
Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 1/81 (1%)
Query: 32 MTSTPYQTYN-PPPPPGFSVTPQLNDDWAQDATPQFQSANMYNTYNAPNQFQPQLQPQQQ 90
M+ + Y G + TP + Y P Q QQQ
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 91 FAQTPFMMPQQATNFPGIPAG 111
F Q +
Sbjct: 61 FLTPAQEQLHQQIDQATTSMN 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 55/364 (15%), Positives = 109/364 (29%), Gaps = 106/364 (29%)
Query: 20 LKQRVFHKDGPAMTSTPYQTYNPPPPP-------GFSVTPQLNDDWAQDATP-------Q 65
L+++ F+K P T P P G+ V+ + +
Sbjct: 33 LQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGY-VSSLVEPSKVGQFDQVLNLCLTE 90
Query: 66 FQSANMYN------TYNAPNQFQPQLQPQQQFAQTPFMMPQQATNFPGIPAGYTDIISNP 119
F++ + + L ++ + A P + ++
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI----TARIMAKRP--FDKKSNSA 144
Query: 120 LVSNVMKEYGKNIIESAGGQMLGQVGGLKYYFAVD------TRY------VMKKLKLILF 167
L V + + ++ GGQ G YF + Y ++K L
Sbjct: 145 LFRAVGEGNAQ-LVAIFGGQ-----GNTDDYF--EELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 168 PFL--HKEWSVQYEQDQPVQP--RYEINAPDLYIPTMAYVTY--ILLAGL--------VL 213
+ + + Q + N PD ++ I + L +L
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 214 GIQNRFSPEKLGMHASTATGCA---LVELVLQYIFLYVTNIQSNLKTWDLLSYSGYKYVG 270
G F+P +L + ATG + + + + + +W+ S+ +V
Sbjct: 257 G----FTPGELRSYLKGATGHSQGLVTAVAI-----------AETDSWE--SF----FVS 295
Query: 271 IILAILVGQLFQWTGYLVSISYCGLALAFFMMRSLKSRVMETPVQHGGVAQTDIYGQPVP 330
+ AI V LF + G +Y +L ++E +++ G P P
Sbjct: 296 VRKAITV--LF-FIGVRCYEAYPNTSLP--------PSILEDSLENNE-------GVPSP 337
Query: 331 PQML 334
ML
Sbjct: 338 --ML 339
Score = 28.1 bits (62), Expect = 6.8
Identities = 47/328 (14%), Positives = 80/328 (24%), Gaps = 150/328 (45%)
Query: 10 QFPQQGP--------RKLLKQRVFHKDGPAMTSTPYQTYNPPPPPGFSVTPQLNDDWAQD 61
F QG R L YQTY+ L D +
Sbjct: 159 IFGGQGNTDDYFEELRDL-----------------YQTYHV-----------LVGDLIKF 190
Query: 62 ATPQFQSANMYNTYNAPNQFQ-----------PQLQPQQQF-AQTPFMMPQ----QATNF 105
+ + T +A F P P + + P P Q ++
Sbjct: 191 SAETLSEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 106 ----------PG----IPAGYT----DIISNPLVSNVM--KEYGKNIIESAGGQMLGQVG 145
PG G T +++ ++ + + ++ +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK----------- 298
Query: 146 GLKYYFAVDTRYVMKKLKLILFPFLHKEWSVQYEQDQP-------------VQ------- 185
+ F + R L P + ++ S++ + P VQ
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 186 ---PRYE------INAPDLYI---PTMAYVTYILLAGLVLGI----------QNR--FSP 221
P + +N + P + L GL L + Q+R FS
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQS------LYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 222 EKLGMHASTATGCALVELVLQYIFLYVT 249
K L FL V
Sbjct: 412 RK---------------LKFSNRFLPVA 424
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 33.0 bits (76), Expect = 0.20
Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 3/126 (2%)
Query: 138 GQMLGQVGGLKYYFAVDTRYVMKKLKLILFPFLHKEWSVQYEQDQPVQPRYEINAPDLYI 197
G + G Y+ + + + W E Q YE +
Sbjct: 863 GMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVEFT 922
Query: 198 PTMAYVTYILLAGLVLGI---QNRFSPEKLGMHASTATGCALVELVLQYIFLYVTNIQSN 254
++ I++ I R S + GM E L Y
Sbjct: 923 CHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPGTDVA 982
Query: 255 LKTWDL 260
L+ + L
Sbjct: 983 LRMYPL 988
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.29
Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 42/228 (18%)
Query: 52 PQLNDDWAQDATPQFQSANMYNTYNAPNQFQPQLQP---QQQFAQTPFMMPQQATNFP-- 106
D+W + + + ++ N L+P ++ F + + FP
Sbjct: 341 LATWDNWKHVNCDKLTTI-IESSLN-------VLEPAEYRKMFDR--LSV------FPPS 384
Query: 107 -GIPAGYTDII-SNPLVSNVMKEYGKNIIESAGGQMLGQVGGLKYYFAVDTRYVMKKLKL 164
IP +I + + S+VM ++ L + + ++ + Y+ K+KL
Sbjct: 385 AHIPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 165 ILFPFLHKEWSVQYEQDQPVQPRYEINAP-DLYIPTMAYVTY----ILLAGLVLGIQN-- 217
LH+ Y + I D Y +++ + I + +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRMVF 497
Query: 218 ---RFSPEKLGMHASTATGCALVEL-VLQYIFLYVTNIQSNLKTWDLL 261
RF +K+ H STA + L LQ + Y I N ++ L
Sbjct: 498 LDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 30.2 bits (67), Expect = 1.5
Identities = 16/154 (10%), Positives = 35/154 (22%), Gaps = 55/154 (35%)
Query: 112 YTDIISNP-------LVSNVMKEYGKNIIESAGGQMLGQVGGLKYYFAVDTRYVMKKLKL 164
II + + + + +++ ++L Y
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL------------RINY------- 91
Query: 165 ILFPFLHKEWSVQYEQDQPVQPRYE------INAPDLYIPTMAYVTYILLAGLVLGIQN- 217
FL + Q + Y N ++ V+ + L ++
Sbjct: 92 ---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRL---QPYLKLRQA 143
Query: 218 --RFSPEKL----GMHASTATGC---ALVELVLQ 242
P K G+ G + V
Sbjct: 144 LLELRPAKNVLIDGV-----LGSGKTWVALDVCL 172
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 b.30.5.6
Length = 159
Score = 28.5 bits (63), Expect = 2.2
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 307 SRVMETPVQHGGVAQTDIYGQPVPPQMLQGTKRRMYFLVFVALSQPVLMLWVSYHLISSS 366
++ PV D G+ VP ++ L+F AL + + Y +
Sbjct: 93 DWMVRLPVSKHVYLVKDPGGKIVPSDVVTIPSSDSQELLFSALVPA--VGFSIYSVSQMP 150
Query: 367 TP 368
Sbjct: 151 NQ 152
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 28.4 bits (63), Expect = 4.4
Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 35/147 (23%)
Query: 165 ILFPFLHKEWSVQYEQDQPVQPRYEINAPDLYIPTMAYV---TYILLAGLVLGIQNRFSP 221
++ PF V + + ++ + + + TY ++ L+ GIQ+ ++
Sbjct: 153 LVTPFFV----VFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTF 208
Query: 222 EKLGMHASTATGCALVELV------------------LQY-------IFLYVTNIQSNLK 256
+ G+ L ELV LQ+ + + ++ ++
Sbjct: 209 AQPGIQMKVKM---LEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIR 265
Query: 257 TWDLLSYSGYKYVGIILAILVGQLFQW 283
WD + L + L +W
Sbjct: 266 LWDTYQSEPDGFSHFHLYVCAAFLVRW 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.421
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,714,562
Number of extensions: 329740
Number of successful extensions: 641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 21
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)