RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy147
         (378 letters)



>d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase
           {Pseudoalteromonas haloplanktis (Alteromonas
           haloplanktis) [TaxId: 228]}
          Length = 94

 Score = 27.4 bits (61), Expect = 0.81
 Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 107 GIPAG-YTDIISNPLVSNVMKEYGKNIIESAGGQ 139
            + +G Y +++   L ++     G+ I  ++ G 
Sbjct: 41  DMASGQYCNVLKGELSADAKSCSGEVITVNSDGT 74


>d1o59a1 b.18.1.22 (A:0-187) Allantoicase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 27.6 bits (61), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 317 GGVAQTDIYGQPVPP 331
           GG+A+  +YG+ VPP
Sbjct: 174 GGIARFRLYGRVVPP 188


>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
           alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 490

 Score = 27.8 bits (61), Expect = 2.5
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 307 SRVMETPVQHGGVAQTDIYGQPVPPQMLQGTKRRMYFLVFVALSQPVLMLWVSYHLISSS 366
             ++  PV        D  G+ VP  ++         L+F AL     + +  Y +    
Sbjct: 36  DWMVRLPVSKHVYLVKDPGGKIVPSDVVTIPSSDSQELLFSALVPA--VGFSIYSVSQMP 93

Query: 367 T 367
            
Sbjct: 94  N 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,396,220
Number of extensions: 63763
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 5
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)