BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14701
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1
Length = 183
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 7 NNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLI 66
N VVGP AV K + WN+ DIN+ESLSLF L P++++L++G GD +L
Sbjct: 76 NGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGD---RVERLD 132
Query: 67 PVINEV--RKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
P I + +K VEV T A ATFNF+VSE R+ AAL+PP
Sbjct: 133 PNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIPP 175
>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1
Length = 184
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 7 NNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLI 66
N + V GP A+ + V WN+ DI ES SLF LEP+++++++G GD +L
Sbjct: 71 NGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGD---RTERLQ 127
Query: 67 P-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATK 121
P V+ +R+ VEV T A ATFNF+ EGRV GAAL+PP + QA +
Sbjct: 128 PHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTALTSQAQAAE 184
>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
GF ++ N V GP A+ + V WN+ DI ES S+F LEP+++++++G G+
Sbjct: 68 GFTINGNRVF-GPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNKTER 126
Query: 62 -HTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
H++++ + + + VE+ T A ATFNF+ EGRV GAAL+PP
Sbjct: 127 LHSQVLQAMRQ--RGIAVEIQDTPNACATFNFLCHEGRVTGAALIPP 171
>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
GF + N V GP + + V WN+ DI ES SLF LEP+++++++G G+
Sbjct: 68 GFTICGNRVF-GPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGN---K 123
Query: 62 HTKLIP-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
+L P V+ +R+ VEV T A ATFNF+ EGRV GAAL+PP
Sbjct: 124 TERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 171
>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1
Length = 184
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
GF ++ N V+ GP A+ V WN+ DI +S SLF LEP+++++++G GD
Sbjct: 67 GFMINGNRVL-GPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTER 125
Query: 62 -HTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
++++ + + + VEV T A ATFNF+ EGRV GAAL+PP
Sbjct: 126 LQSQVLQAMRQ--RGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 170
>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1
Length = 174
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
GF ++ N+V GP AV + WN+ SDI++ESLSLF LEP+++VL++G G
Sbjct: 66 GFNINGNTVF-GPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGARTER 124
Query: 62 -HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGR 98
H + V+ E++K VEV T A ATFNF+ SE R
Sbjct: 125 LHAE---VLEELKKRGIAVEVQDTPNACATFNFLSSEKR 160
>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=RCAP_rcc01784 PE=4 SV=1
Length = 124
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 3 FRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNH 62
FR++ +V G L + + W DD L+ L ++D+L+ G+G +
Sbjct: 22 FRIAG-AVHRGGLLIHAEAAMPWTGFDD-------LAALRALAGQVDLLLCGMGADIAHL 73
Query: 63 TKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVP 106
K + V E E + T A +N ++SEGR GAAL+P
Sbjct: 74 PKGLQVELEALG-VMAEPMSTASAARHYNVLLSEGRRVGAALLP 116
>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1
OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1
Length = 415
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 101 GAALVPPVRISFTEEDIQATKHQNRDVYKLDIKID 135
G +L PP+RI +EE + +H DV++ DI D
Sbjct: 6 GFSLTPPLRICNSEE--EELRHDGSDVWRYDINFD 38
>sp|Q2NVN4|CYSJ_SODGM Sulfite reductase [NADPH] flavoprotein alpha-component OS=Sodalis
glossinidius (strain morsitans) GN=cysJ PE=3 SV=1
Length = 603
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 47 KLDVLIIGLGDFKFNHT---KLIPVINEVRKHCNVEVLPTERAIATFNFMVSE 96
+LDV++I GD+KF KL+ +I + + P E A+A + ++ S+
Sbjct: 90 RLDVVLINAGDYKFKQIAQEKLLLIITSTQGEGD----PPEEAVALYKYLFSK 138
>sp|Q9CGB9|YLJE_LACLA Uncharacterized RNA methyltransferase YljE OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=yljE PE=3 SV=1
Length = 460
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 48 LDVLIIGLGDF---------KFNHTKLIPVINEVRKHCNVEVLPTERAIATFNF 92
LD L G+ DF KF H +++ ++ + + VLP AI T N+
Sbjct: 81 LDYLRTGIADFGHLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINY 134
>sp|Q2NIW6|RL5_AYWBP 50S ribosomal protein L5 OS=Aster yellows witches'-broom
phytoplasma (strain AYWB) GN=rplE PE=3 SV=1
Length = 181
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 26 NILDDSDINMESLSLFLHLE----PKLDVLII--GLGDFKFNHTKLIPVINEVRKHCNVE 79
N LD S I + F + PK+D ++I G+GD FN L V+ E++
Sbjct: 7 NTLDYSKITATLMKTFNYKSVMQVPKVDKVVINMGVGDAIFNVKVLDDVVEELKLLSGQS 66
Query: 80 VLPTERAIATFNFMVSEGRVAGAAL 104
+ T+ A NF + EG GA +
Sbjct: 67 PVITKAKKAISNFKLREGMPIGAKV 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,693,675
Number of Sequences: 539616
Number of extensions: 1832863
Number of successful extensions: 3443
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3428
Number of HSP's gapped (non-prelim): 22
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)