RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14701
         (136 letters)



>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 127

 Score = 79.5 bits (196), Expect = 8e-21
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLG-DFKF 60
           GF  +      G L      V+ W++     I+  SL         +D LI+G G D   
Sbjct: 23  GFYFAGM-SHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWI 81

Query: 61  NHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              +L   +     +  ++ + T  AI T+N M+ E R   AAL+  
Sbjct: 82  APRQLREALRG--VNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAV 126


>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein
           BH05650 {Bartonella henselae [TaxId: 38323]}
          Length = 118

 Score = 70.6 bits (173), Expect = 2e-17
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFR   +    G +      ++  ++        E +S  L    +++VL+IG G     
Sbjct: 15  GFRF-ADMSHRGSIICIPSGIYGIDMTGP-VPTQEDISRVLEESDQIEVLLIGTGV---- 68

Query: 62  HTKLIPVINEVRKHCN-----VEVLPTERAIATFNFMVSEGRVAGAALVPP 107
             +L+ +  E+R          + + T  A+ TFN +++E R   A L   
Sbjct: 69  --ELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV 117


>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 64.1 bits (156), Expect = 6e-15
 Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLS---LFLHLEPKLDVLIIGLGDF 58
             ++  ++       V+     +W+  +    +   +    +   +E  +  L+IG G  
Sbjct: 12  QMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGM- 70

Query: 59  KFNHTKLIPVINEVRKHCN-----VEVLPTERAIATFNFMVSEGRVAGAAL 104
               ++ + V +   ++       V VL TE+A+  +N +V++G   G   
Sbjct: 71  ----SEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 117


>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 118

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 7   NNSVVVGP---LAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHT 63
           ++ +V+ P   +    K +          ++ E L  +L      DVL++G G +     
Sbjct: 19  DHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYL--VEDFDVLLVGTGIY--GML 74

Query: 64  KLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALV 105
            L+P   ++ +   V   PT+ A+     +  + R+     V
Sbjct: 75  SLLPESKKLVEDKEVIEKPTKEALKLLEELWGKKRILAIIHV 116


>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938)
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 113

 Score = 46.9 bits (111), Expect = 2e-08
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 7   NNSVVVGPLAVF--NKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTK 64
            + +VV         +   S      S   M    L   LE K + +IIG G        
Sbjct: 20  RSDIVVHVDGSVTPRRKEISRRKYGTSH-VMAEEELEELLEEKPESIIIGSGV-----HG 73

Query: 65  LIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAAL 104
            +          +  VLPT  AI  +N   S GR   A +
Sbjct: 74  ALET----GFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 495,959
Number of extensions: 21283
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 7
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)