RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14703
(356 letters)
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 188 bits (479), Expect = 5e-58
Identities = 85/183 (46%), Positives = 118/183 (64%), Gaps = 11/183 (6%)
Query: 159 VLLVDQRIVENAKKTYDVA--GTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFD 216
L D+ I+E A+ D A GTTA++A++ G +L VANVGDSR V+C G A+ L+ D
Sbjct: 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLC-RNGEAVQLTKD 137
Query: 217 HKPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADPDILTFDLS 276
HKP ER+RI++AGG ++ RV G+LA +RALGD+ LK V A+PD+ L+
Sbjct: 138 HKPVNEEERERIEKAGGRVSN---GRVPGVLAVTRALGDFDLK--PGVSAEPDVTVVKLT 192
Query: 277 DHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEE--LFGAKSLTLQAYYKGSLDNITVIV 334
+ FLILASDGLWD+ SN+EAV+ ++ L +E A+ L A +GS DNITV+V
Sbjct: 193 EDD-DFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNITVVV 251
Query: 335 INL 337
+ L
Sbjct: 252 VRL 254
Score = 57.0 bits (138), Expect = 2e-09
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIE 48
ED VI N+++ L VFDGHGG A FA L+ L +++ E
Sbjct: 15 NEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEE 62
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 175 bits (446), Expect = 4e-53
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 11/177 (6%)
Query: 160 LLVDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKP 219
L D+ I+E + ++G+TA++A++ G +L VANVGDSR V+C G A+ L+ DHKP
Sbjct: 86 LSTDEEILEELE---ALSGSTAVVALISGNKLYVANVGDSRAVLC-RNGKAVQLTEDHKP 141
Query: 220 QQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADPDILTFDLSDHK 279
ER RI+ AGGF+ RV G+LA SRA+GD+ LK V A+PD+ +L++
Sbjct: 142 SNEDERARIEAAGGFVIN---GRVNGVLALSRAIGDFFLK--PYVSAEPDVTVVELTEKD 196
Query: 280 PQFLILASDGLWDIFSNEEAVNFIKQRLGEELF-GAKSLTLQAYYKGSLDNITVIVI 335
FLILASDGLWD+ SN+E V+ +++ L ++ AK L A +GS DNITV+V+
Sbjct: 197 -DFLILASDGLWDVLSNQEVVDIVRKHLSKDPKEAAKRLIDLALARGSKDNITVVVV 252
Score = 48.9 bits (117), Expect = 1e-06
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVI 47
MED VI ++ D+G VFDGHGG AA F NL L +++I
Sbjct: 23 MEDAHVITPDLSDSG-GFFGVFDGHGGSEAAKFLSKNLPEILAEELI 68
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 162 bits (412), Expect = 4e-48
Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 7/157 (4%)
Query: 178 GTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAF 237
G+TA++A++ G +L VANVGDSR V+C + L+ DHKP ER+RI+ AGGF+
Sbjct: 99 GSTAVVALIRGQKLYVANVGDSRAVLCRNGNAIKQLTEDHKPSNEDERRRIRGAGGFV-- 156
Query: 238 NGVWRVAGILATSRALGDYPLKDKK--LVIADPDILTFDLSDHKPQFLILASDGLWDIFS 295
+ RV G+LA SRA GD+ LK K V A+PD+ + +++ +FLILASDGLWD+ S
Sbjct: 157 SRNGRVNGVLAVSRAFGDFELKKGKPQPVSAEPDVTSHKITESD-EFLILASDGLWDVLS 215
Query: 296 NEEAVNFIKQRLGEE--LFGAKSLTLQAYYKGSLDNI 330
++E V+ ++ L + + A+ L +A GS DNI
Sbjct: 216 DQEVVDIVRSELSDGSPMEAAEKLVDEAIAYGSEDNI 252
Score = 37.0 bits (86), Expect = 0.010
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 1 MEDRFVINENIDDTG----VSLIAVFDGHGGEFAANFARDNLMTSLN 43
MED + +N++ + AVFDGHGG AA +A +L T L
Sbjct: 15 MEDAHIAGKNLNASSGKDSFGFFAVFDGHGGSQAAKYAGKHLETILA 61
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 127 bits (320), Expect = 1e-33
Identities = 66/167 (39%), Positives = 108/167 (64%), Gaps = 13/167 (7%)
Query: 177 AGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIA 236
+GTTAL A++ G L+VAN GD R V+C +G AI +S DHKP +ERKRI+ +GG++
Sbjct: 166 SGTTALAALVVGRSLVVANAGDCRAVLC-RRGKAIEMSRDHKPMCSKERKRIEASGGYV- 223
Query: 237 FNGVWRVAGILATSRALGDYPL-----KDKKLVIADPDILTFDLSDHKPQFLILASDGLW 291
++G + G L +RALGD+ + D + A+P+++T L++ + +FLI+ DG+W
Sbjct: 224 YDGY--LNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTE-EDEFLIIGCDGIW 280
Query: 292 DIFSNEEAVNFIKQRLGEE---LFGAKSLTLQAYYKGSLDNITVIVI 335
D+F ++ AV+F ++RL E + +K L +A + S DN+ V+V+
Sbjct: 281 DVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVV 327
Score = 35.7 bits (82), Expect = 0.029
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 1 MEDRFVINEN-IDDTGV--------SLIAVFDGHGGEFAANFARDNL 38
MED ++ +N + D G+ + VFDGHGG+ AA+FA +L
Sbjct: 79 MEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHL 125
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 118 bits (297), Expect = 3e-31
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 150 NYIKLVTDEVLLVDQRIVENAKKTYDVA--GTTALIAILEGTRLIVANVGDSRGVMCDSK 207
+ +L+ + +L ++ I E + DV GTT ++ ++ G +L VANVGDSR +
Sbjct: 79 SLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLR-D 137
Query: 208 GNAIPLSFDHKPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIAD 267
G L+ DH E++ I + A +RALGD+ L +
Sbjct: 138 GELKQLTEDHSLVNRLEQRGIITPEEARSHPRR------NALTRALGDFDL-------LE 184
Query: 268 PDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAYYKGSL 327
PDI +L FL+L SDGLWD+ S++E V+ +K A L A G
Sbjct: 185 PDITELELEPGD--FLLLCSDGLWDVVSDDEIVDILKNS-ETPQEAADKLIELALEGGGP 241
Query: 328 DNITVIVINL 337
DNITV+++ L
Sbjct: 242 DNITVVLVRL 251
Score = 39.3 bits (92), Expect = 0.002
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
ED F+I N + + L AV DG GG A A + +L
Sbjct: 23 NEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEAL 64
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 102 bits (257), Expect = 1e-24
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 22/182 (12%)
Query: 172 KTYDVAGTTA-LIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKE 230
+ G+T I++ L V NVGDSR ++C G + + DHKP ER+RI+
Sbjct: 99 DSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVC-RDGKLVFATEDHKPNNPGERQRIEA 157
Query: 231 AGGFIAFNGVWRVAGILATSRALGD--YPLKD-----KKLVIADPDI--LTFDLSDHKPQ 281
GG + N RV G LA SRA GD + +K ++ VIA PD+ LT +D
Sbjct: 158 CGGRVVSN---RVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND---- 210
Query: 282 FLILASDGLWD-IFSNEEAVNFIKQRLG--EEL-FGAKSLTLQAYYKGSLDNITVIVINL 337
F+ILA DG+++ FSNEE V F+K++L ++L A + +A +GS DNI+ +++ L
Sbjct: 211 FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQL 270
Query: 338 MN 339
+
Sbjct: 271 KD 272
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 43.9 bits (104), Expect = 8e-05
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 42/176 (23%)
Query: 178 GTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAF 237
GTT ++A+++ T++ VA+VGDSR KG L+ DH+ Q RE +R E
Sbjct: 485 GTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQ-REIQRGVEPQ----- 538
Query: 238 NGVWRVAGILATSR--------ALGDYPLKDKKLVIADPDILTFDLSDHKPQFLILASDG 289
+A +R ALG P +D + PDI ++ + L+L SDG
Sbjct: 539 ---------IAYARPDAYQLTQALG--P-RDNSAI--QPDIQFLEIEED--TLLLLCSDG 582
Query: 290 LWDIFSNEEAVNFIKQRLGEEL-FGA-------KSLTLQAYYKGSLDNITVIVINL 337
L D N+ + L L A K + L Y G DNIT I++ L
Sbjct: 583 LSD---NDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGH-DNITAILVRL 634
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 33.1 bits (76), Expect = 0.14
Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 33/122 (27%)
Query: 178 GTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAF 237
TT L+A++ ++ +GD V+ D G LS G +
Sbjct: 97 ATTLLLAVITPGGIVFFQIGDGAIVVRDGDGELQLLSEPDS-------------GEYA-- 141
Query: 238 NGVWRVAGILATSRALGDYPLKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDIFSNE 297
N + TS + + I L L L +DGL D E
Sbjct: 142 NETTFL-----TSPD-----------ALEEFRIRRLTLEP--GDALALMTDGLSDSLVTE 183
Query: 298 EA 299
E
Sbjct: 184 EP 185
>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
polymerase delta, subunit B [DNA replication,
recombination, and repair].
Length = 481
Score = 33.5 bits (77), Expect = 0.14
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 44 DKVIELKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQ 103
KV + + + +L P S + KP L ++ + + +S+
Sbjct: 41 SKVDYIIQYASIYFARLLKALRPRIIKESVKRWPD--KPVLERDLDVEYLPDVRGNSTCG 98
Query: 104 --ITD--PELLSRINSLSRPITREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEV 159
+ D P R LSR I RE S + + +E S +++ G++N ++ +
Sbjct: 99 GIVEDFVPYFRDRYEKLSR-IIREREEARYVSPIKKDLEGGSDVKIIGEVNDVRETKNGH 157
Query: 160 LLVD 163
++
Sbjct: 158 FIIS 161
>gnl|CDD|197885 smart00808, FABD, F-actin binding domain (FABD). FABD is the
F-actin binding domain of Bcr-Abl and its cellular
counterpart c-Abl. The Bcr-Abl tyrosine kinase causes
different forms of leukemia in humans. Depending on its
position within the cell, Bcr-Abl differentially affects
cellular growth. The FABD forms a compact left-handed
four-helix bundle in solution.
Length = 126
Score = 30.5 bits (69), Expect = 0.54
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 81 KPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRPITREVHNTSNTSSVVETVEI- 139
K +LRK T S I+ +L L + ++ S ++
Sbjct: 4 KVALRKTRTQQAAERI---PSDAISKDMILELTELLESALVALSETPASHSQWLDKGHQL 60
Query: 140 ----SSYIE 144
S Y +
Sbjct: 61 HSTCSGYAD 69
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase
inhibitor.
Length = 520
Score = 31.0 bits (70), Expect = 1.1
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 49 LKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPE 108
+KK++A L ++ P PS+ KP T +K S + D +
Sbjct: 138 VKKLVAGSLSQVGSTVRELLTMVHPPPSKGKSKPIGGGTMTKKHSGSSKFPSWVKPEDRK 197
Query: 109 LLSRINSLSRPITREVHNTSNTSSVVETVEISSYIEVNGKINYIK 153
LL + N ++ + T N +++++ V + + YIK
Sbjct: 198 LL-QTNGVTPDVVVAADGTGNFTTIMDAVLAAPDYSTKRYVIYIK 241
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 30.7 bits (69), Expect = 1.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 61 YPMYTPNKPPPSPRPSQK 78
Y MY KPP SP PS
Sbjct: 558 YTMYEDLKPPTSPTPSPV 575
>gnl|CDD|215361 PLN02673, PLN02673, quinolinate synthetase A.
Length = 724
Score = 30.8 bits (69), Expect = 1.2
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 69 PPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITD------PELLSRINSLSRPITR 122
PPP PS SP CS S SQ T+ L+ SL+ P+ R
Sbjct: 53 PPPDSAPSNASPF----------SCSAV-AFSPSQTTELVPCKLQRLIKEFKSLTEPVDR 101
Query: 123 EVHNTSNTSSVVETVEISSYIEVN 146
V + +S++ + SS +E N
Sbjct: 102 -VKRLLHYASLLPPLPESSRVESN 124
>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
dehydrogenase.
Length = 237
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 175 DVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGG- 233
+V A + G +++ V DS G + D G I + K + +G
Sbjct: 42 NVGSYAAEKLLELGAKVVA--VSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAE 99
Query: 234 FIAFNGVWRV 243
+I+ +W +
Sbjct: 100 YISGEELWEI 109
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases.
Length = 193
Score = 29.6 bits (67), Expect = 1.5
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 43/136 (31%)
Query: 178 GTTALIAILE--GTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFI 235
T +A+ + G L AN G S + + G
Sbjct: 86 FATLFLALYDFAGGTLSYANAGHSPPYLLRADGG-------------------------- 119
Query: 236 AFNGVWRVAGILATSRALGDYPLKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDIFS 295
V + LG P D ++ +L+ L+L +DGL + +
Sbjct: 120 ------LVEDLDDLGAPLGLEP---------DVEVDVRELTLEPGDLLLLYTDGLTEARN 164
Query: 296 NEEAVNFIKQRLGEEL 311
E +++ LG
Sbjct: 165 PERLEELLEELLGSPP 180
>gnl|CDD|217197 pfam02711, Pap_E4, E4 protein. This is is a family of
Papillomavirus proteins, E4, coded for by ORF4. A splice
variant, E1--E4, exists but neither the function of E4
or E1--E4 is known.
Length = 95
Score = 28.4 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 60 LYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSS 102
L+ TP +PPP P P +PK R+ +D S + S SS
Sbjct: 16 LHTYTTPPRPPPPPPP--WAPKKRCRRRLESDSDSSSTTSPSS 56
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 29.8 bits (67), Expect = 2.5
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 61 YPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGT-KNSSSSQITDPELLSRINSLSRP 119
YP +P + P SP PS+ + T K SS +D E + RP
Sbjct: 71 YP--SPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDE-----DEAERP 123
Query: 120 ITREVHNTSNTSSVVETVEISSY 142
R ++ ++SS +
Sbjct: 124 SKRPRSDSISSSSSPAKPPEACL 146
>gnl|CDD|240434 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisional.
Length = 259
Score = 29.4 bits (66), Expect = 2.5
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 67 NKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRPITREV 124
S SL K ++ T++S + E I S R I + +
Sbjct: 30 GDIDNDANLSLLDEDASLGKGRQSNSGPSTESSPTCATLMEEKKGAIESARRKILKSL 87
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members
of this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 28.7 bits (64), Expect = 3.1
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 58 HKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRI 113
T + P PSP SP S++ +T +G + SS++ + E +
Sbjct: 78 VPSGDTSTYSYPVPSPSY-SPSPGSSIQSLPST---TGVRPQSSAENANSEKRKLL 129
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative)
Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
Characterized members of the RND superfamily all
probably catalyze substrate efflux via an H+ antiport
mechanism. These proteins are found ubiquitously in
bacteria, archaea and eukaryotes. They fall into seven
phylogenetic families, this family (2.A.6.7) consists of
uncharacterised putative transporters, largely in the
Archaea [Transport and binding proteins, Unknown
substrate].
Length = 719
Score = 29.4 bits (66), Expect = 3.6
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 106 DPELLSRINSLSRPI--TREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLLVD 163
DPEL+ ++ LSR I T S+++ V EV G + +
Sbjct: 449 DPELVRFMDELSRDIKATGVAARVFGAPSIIDLV-----KEVEGLPAPERSALEP----- 498
Query: 164 QRIVENAKKTYDVAGTTAL 182
I E+ + Y G +
Sbjct: 499 --IPEDEEGGYISGGQIKV 515
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 28.8 bits (65), Expect = 5.1
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 29 FAANFARDNLMTSLNDKVIELKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKN 87
F+ + D L LN ++ E+K+ + P + P R +K K +K
Sbjct: 355 FSGRYIGDELKEELNKRIEEIKEKYPKP-----PKKKREEKKPQKRKKKKKRKKKGKKR 408
>gnl|CDD|199847 cd03865, M14_CPE, Peptidase M14 carboxypeptidase subfamily
N/E-like; Carboxypeptidase E subgroup. Peptidase M14
Carboxypeptidase (CP) E (CPE, also known as
carboxypeptidase H, and enkephalin convertase; EC
3.4.17.10) belongs to the N/E subfamily of the M14
family of metallocarboxypeptidases (MCPs).The M14 family
are zinc-binding CPs which hydrolyze single, C-terminal
amino acids from polypeptide chains, and have a
recognition site for the free C-terminal carboxyl group,
which is a key determinant of specificity. CPE is an
important enzyme responsible for the proteolytic
processing of prohormone intermediates (such as
pro-insulin, pro-opiomelanocortin, or
pro-gonadotropin-releasing hormone) by specifically
removing C-terminal basic residues. In addition, it has
been proposed that the regulated secretory pathway (RSP)
of the nervous and endocrine systems utilizes
membrane-bound CPE as a sorting receptor. A naturally
occurring point mutation in CPE reduces the stability of
the enzyme and causes its degradation, leading to an
accumulation of numerous neuroendocrine peptides that
result in obesity and hyperglycemia. Reduced CPE enzyme
and receptor activity could underlie abnormal placental
phenotypes from the observation that CPE is
down-regulated in enlarged placentas of interspecific
hybrid (interspecies hybrid placental dysplasia, IHPD)
and cloned mice.
Length = 323
Score = 28.4 bits (63), Expect = 5.7
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 25 HGGEFAANFARDNLMT-SLNDKVIELKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPS 83
HGG+ AN+ D + S ++ I + L + Y P P+ P +K+ S
Sbjct: 200 HGGDLVANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSLNPAMSDPNRPPCRKNDDDS 259
Query: 84 LRKNATTD 91
+ TT+
Sbjct: 260 SFVDGTTN 267
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 28.5 bits (64), Expect = 5.9
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 64 YTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITD 106
P PP P + KP+ + T G I
Sbjct: 241 AAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAK 283
>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional.
Length = 618
Score = 28.5 bits (64), Expect = 7.2
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 38/94 (40%)
Query: 282 FLILASDGLWDIFSNEEAVNFIKQ----------------------RLGEELFGAKSLTL 319
FLIL G+W SN + + +LG +L GA S L
Sbjct: 33 FLILVGVGIWMQVSNGDTPETASRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRL 92
Query: 320 QAYYKGSL-------------DNITVIVINLMNY 340
Q + SL NIT IV++L N+
Sbjct: 93 Q---ENSLFDIVNTIRQAKDDRNITGIVLDLKNF 123
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 28.2 bits (62), Expect = 8.2
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 65 TPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRPITREV 124
P P + +P+ P PS NA + N++++ + P + N+ S T
Sbjct: 294 APKAPTEAAKPA---PAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSN 350
Query: 125 HNTSNTSS 132
N + SS
Sbjct: 351 TNANQGSS 358
>gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding. The F-actin binding
domain forms a compact bundle of four antiparallel
alpha-helices, which are arranged in a left-handed
topology. Binding of F-actin to the F-actin binding
domain may result in cytoplasmic retention and
subcellular distribution of the protein, as well as
possible inhibition of protein function.
Length = 179
Score = 27.4 bits (60), Expect = 8.5
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 20/92 (21%)
Query: 62 PMYTPNKPPPSPRPSQKSPKPSLRKNATTDECS------GTKNS-----------SSSQI 104
P+ TP P P P PS SP PS N T + T+ S +S +I
Sbjct: 20 PVGTP--PSPVPLPST-SPSPSKMANGTQPSSAAFIPLISTRVSLRKTRQPPERIASGKI 76
Query: 105 TDPELLSRINSLSRPITREVHNTSNTSSVVET 136
T +L +L I+R ++ S+V+E
Sbjct: 77 TKGVVLDSTEALCLAISRNSEQMASHSAVLEA 108
>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional.
Length = 395
Score = 27.9 bits (62), Expect = 9.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 106 DPELLSRINSLSRPITREVHNTSNTSSVVETVEISSYIEV 145
DPE+ + I L RP T+ VH + S+ E +I + E
Sbjct: 135 DPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEA 174
>gnl|CDD|178697 PLN03152, PLN03152, hypothetical protein; Provisional.
Length = 241
Score = 27.5 bits (61), Expect = 9.9
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 57 LHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSL 116
L L P + P +P S + R++ S +S ++Q P L+ +
Sbjct: 5 LLSLSPHPPNPQNPNPRKPKPLSRCGASRRDFILHTASLCASSLAAQNPLPPSLADPSKP 64
Query: 117 SRPITREVHNT 127
S+P+ + NT
Sbjct: 65 SKPLLSGIANT 75
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 27.7 bits (61), Expect = 10.0
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 72 SPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSR 112
P S K S R + T + S T +S ++S+
Sbjct: 216 FPTESNPHNKSSSRFSFRTVDKSSTGETSHVDKYLNSMMSK 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,231,355
Number of extensions: 1783992
Number of successful extensions: 2035
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 43
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)