RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14703
(356 letters)
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 234 bits (598), Expect = 9e-76
Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 12/207 (5%)
Query: 150 NYIKLVTDEVLLVDQRIVENAKKTYDV----AGTTALIAIL-EGTRLIVANVGDSRGVMC 204
N L+T L +D+ +A+ + D +GTTA +A+L +G L+VA+VGDSR ++C
Sbjct: 70 NLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILC 129
Query: 205 DSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAFN--GVWRVAGILATSRALGDYPLKDKK 262
KG + L+ DH P++ E++RIK+ GGF+A+N G V G LA +R++GD LK
Sbjct: 130 -RKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLK-TS 187
Query: 263 LVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAY 322
VIA+P+ L FL+L +DG+ + +++E +F+ Q A ++T QA
Sbjct: 188 GVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE-AAHAVTEQAI 246
Query: 323 YKGSLDNITVIVINLMNYDWAKAAQED 349
G+ DN T +V+ W K
Sbjct: 247 QYGTEDNSTAVVVPFGA--WGKEGHHH 271
Score = 54.3 bits (131), Expect = 1e-08
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKIIAQGLHKL 60
EDRF + D+ V AV+DGHGG AA+F ++ + D + +K + L
Sbjct: 22 NEDRFDFAQLTDE--VLYFAVYDGHGGPAAADFCHTHMEKCIMDL-LPKEKNLETLLTLA 78
Query: 61 Y 61
+
Sbjct: 79 F 79
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 229 bits (584), Expect = 1e-72
Identities = 71/351 (20%), Positives = 117/351 (33%), Gaps = 59/351 (16%)
Query: 1 MEDRFVINENI-DDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKIIAQGLHK 59
ED +++ V + AVFDGH GE + + + L + +
Sbjct: 27 DEDAILVSAPATSRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGKLSEFTFAEVKKACLS 86
Query: 60 LYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRP 119
L + + +G+ + I
Sbjct: 87 LDAE--------------------IIRKLGPKHVAGS--------------TGIIVAIER 112
Query: 120 ITREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTYDVAGT 179
++ V +V +++ + I + E + V
Sbjct: 113 LSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHP---------ELVGRYPRVPDV 163
Query: 180 TALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAFNG 239
+ N+GDSR + S G LS DHKP E RI++AGG +
Sbjct: 164 QQKTIPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEKAGGSVETFD 223
Query: 240 VWRVAGILATSRALGDYPLK-------DKKLVIADPDILTFDLSDHKPQFLILASDGLWD 292
V RV G+LA SRA GD K +++ VIA PD+ F L+LA DG+++
Sbjct: 224 VPRVDGVLALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYALSS--DLLLLACDGVYE 281
Query: 293 IFSNEEAV--NFIKQRLGEEL----FGAKSLTLQAYYKGSLDNITVIVINL 337
+ A + + A + AY S DNI+V+++
Sbjct: 282 PSGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMNSQDNISVMLVAF 332
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 229 bits (585), Expect = 2e-72
Identities = 70/195 (35%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Query: 150 NYIKLVTDEVLLVDQRIVENAKKTYDV----AGTTALIAIL-EGTRLIVANVGDSRGVMC 204
N L+T L +D+ +A+ + D +GTTA +A+L +G L+VA+VGDSR ++C
Sbjct: 184 NLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILC 243
Query: 205 DSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAFN--GVWRVAGILATSRALGDYPLKDKK 262
KG + L+ DH P++ E++RIK+ GGF+A+N G V G LA +R++GD LK
Sbjct: 244 -RKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLK-TS 301
Query: 263 LVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAY 322
VIA+P+ L FL+L +DG+ + +++E +F+ Q A ++T QA
Sbjct: 302 GVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE-AAHAVTEQAI 360
Query: 323 YKGSLDNITVIVINL 337
G+ DN T +V+
Sbjct: 361 QYGTEDNSTAVVVPF 375
Score = 53.3 bits (128), Expect = 5e-08
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKI 52
EDRF + D+ V AV+DGHGG AA+F ++ + D + + K +
Sbjct: 136 NEDRFDFAQLTDE--VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNL 185
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 225 bits (575), Expect = 3e-71
Identities = 62/357 (17%), Positives = 112/357 (31%), Gaps = 80/357 (22%)
Query: 1 MEDRFVINENIDD------TGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKIIA 54
E + + + + A+FDG G +A + N+M LND ++ I
Sbjct: 27 SESPHSDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQNVMNYLNDLRDVNEEEIT 86
Query: 55 QGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRIN 114
+ ++ LR S + E
Sbjct: 87 RQFERM--------------------DGDLRAANLPGGSSALIIFVRYEKKPTEARVVGR 126
Query: 115 SLSRPITREVHNTSN--TSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKK 172
+ +E + + ++ V ++ + +
Sbjct: 127 QIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKGIYTIH----------------- 169
Query: 173 TYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAG 232
VA++G+SR V+ S AI LS H +ER R++ AG
Sbjct: 170 --------------------VASLGNSRCVLK-SGRTAIHLSTPHTASSHKERHRVQAAG 208
Query: 233 GFI-AFNGVWRVAGILATSRALGDYPLK-------DKKLVIADPDILTFDLSDHKPQFLI 284
G NG + G++ +RA G + K + LV A PD+ TF ++
Sbjct: 209 GVFTTVNGELLLGGVVPMTRAFGSFDFKKGGQGKLQQDLVSAVPDVTTFFAYPG--DDIV 266
Query: 285 LASDGLWDIFSNEEAVNFIKQRLGEE----LFGAKSLTLQAYYKGSLDNITVIVINL 337
+ G + F + A+ L AK++ + A + NI+ V +L
Sbjct: 267 AGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHL 323
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 224 bits (572), Expect = 1e-70
Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 16/236 (6%)
Query: 133 VVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTY--DVAGTTALIAILEGTR 190
+ + N + L +D+ + ++K + D +G+TA+ ++
Sbjct: 79 ITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQH 138
Query: 191 LIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAFNGVWRVAGILATS 250
N GDSRG++C + DHKP E++RI+ AGG + RV G LA S
Sbjct: 139 TYFINCGDSRGLLC-RNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI---QRVNGSLAVS 194
Query: 251 RALGDYPLKDKK-------LVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFI 303
RALGD+ K LV +P++ + S+ QF+ILA DG+WD+ NEE +F+
Sbjct: 195 RALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFV 254
Query: 304 KQRLGEEL---FGAKSLTLQAYYKGSLDNITVIVINLMNYDWAKAAQEDRKKNLSR 356
+ RL + YKGS DN++VI+I N ++ L +
Sbjct: 255 RSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELDK 310
Score = 54.0 bits (130), Expect = 2e-08
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 MEDRFVINENI--DDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
MED + S AV+DGH G A + ++L+ +
Sbjct: 36 MEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHI 79
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 221 bits (565), Expect = 4e-70
Identities = 87/376 (23%), Positives = 131/376 (34%), Gaps = 115/376 (30%)
Query: 1 MEDRFVINENI-------------------DDTGVSLIAVFDGHGGEFAANFARDNLMTS 41
MED F ++ + V+DGHGG A++ RD L
Sbjct: 28 MEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLH-- 85
Query: 42 LNDKVIELKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSS 101
+A+ + ++ + Q
Sbjct: 86 ---------FALAEEIERIKD---ELCKRNTGEGRQVQWDKVFTS--------------C 119
Query: 102 SQITDPELLSRINSLSRPITREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLL 161
D E+ +I + +V + +V T V L+
Sbjct: 120 FLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTA-----------------VV--ALV 160
Query: 162 VDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQ 221
I +V+N GDSR V+ A+PLS DHKP +
Sbjct: 161 CSSHI-------------------------VVSNCGDSRAVLF-RGKEAMPLSVDHKPDR 194
Query: 222 MRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADPDILTFDLSDHKPQ 281
E RI+ AGG + RV G+LA SR++GD LK VI +P++ S +
Sbjct: 195 EDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKP--YVIPEPEVTFMPRSRE-DE 251
Query: 282 FLILASDGLWDIFSNEEAVNFIKQRLGEELFG--------------------AKSLTLQA 321
LILASDGLWD+ +N+E ++R+ A L++ A
Sbjct: 252 CLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLA 311
Query: 322 YYKGSLDNITVIVINL 337
KGS DNI++IVI+L
Sbjct: 312 LQKGSKDNISIIVIDL 327
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 220 bits (563), Expect = 5e-70
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 33/214 (15%)
Query: 150 NYIKLVTDEVLLVDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGN 209
+ K + + L VD I A + G+T+++A++ + + VAN GDSR V+C
Sbjct: 98 KWKKALFNSFLRVDSEIESVAP---ETVGSTSVVAVVFPSHIFVANCGDSRAVLC-RGKT 153
Query: 210 AIPLSFDHKPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADPD 269
A+PLS DHKP + E RI+ AGG + RV G+LA SR++GD L K +I DP+
Sbjct: 154 ALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYL--KPSIIPDPE 211
Query: 270 ILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFG---------------- 313
+ LILASDG+WD+ ++EEA ++R+
Sbjct: 212 VTAVKRVKE-DDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRK 270
Query: 314 ----------AKSLTLQAYYKGSLDNITVIVINL 337
A+ L+ A +GS DNI+V+V++L
Sbjct: 271 EGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDL 304
Score = 54.0 bits (130), Expect = 2e-08
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 1 MEDRFVINENI--------------DDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKV 46
MED + V+DGHGG AN+ R+ + +L +++
Sbjct: 23 MEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCRERMHLALAEEI 82
Query: 47 IELKKIIAQG 56
+ K +++ G
Sbjct: 83 AKEKPMLSDG 92
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 216 bits (551), Expect = 3e-68
Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 175 DVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGF 234
D +G+TA+ ++ + N GDSR V+ G + DHKP RE++RI+ AGG
Sbjct: 130 DRSGSTAVGVMISPKHIYFINCGDSRAVLY-RNGQVCFSTQDHKPCNPREKERIQNAGGS 188
Query: 235 IAFNGVWRVAGILATSRALGDYPLKDKK-------LVIADPDILTFDLSDHKPQFLILAS 287
+ RV G LA SRALGDY K LV +P++ ++ +F+ILA
Sbjct: 189 VMI---QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEE-DEFIILAC 244
Query: 288 DGLWDIFSNEEAVNFIKQRLGEEL---FGAKSLTLQAYYKGSLDNITVIVINLMN 339
DG+WD+ SNEE ++K RL + +KGS DN++++++ N
Sbjct: 245 DGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVLVCFSN 299
Score = 56.6 bits (137), Expect = 3e-09
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 MEDRFVINENI--DDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
MED I S AV+DGH G AN+ +L+ +
Sbjct: 38 MEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHI 81
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 206 bits (527), Expect = 8e-65
Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 21/202 (10%)
Query: 153 KLVTDEVLLVDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIP 212
+ V +E+ ++ + + +G TA++A+L G L VAN GDSR V+C G A+
Sbjct: 106 EKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVC-RNGKALE 164
Query: 213 LSFDHKPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKK-------LVI 265
+SFDHKP+ E +RI++AGG + +G RV G L SRA+GD+ K K ++
Sbjct: 165 MSFDHKPEDTVEYQRIEKAGGRVTLDG--RVNGGLNLSRAIGDHGYKMNKSLPAEEQMIS 222
Query: 266 ADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKS----LTLQA 321
A PDI + +F++LA DG+W+ ++E+ V F+++R+ + L
Sbjct: 223 ALPDIEKITVGPE-DEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHC 281
Query: 322 YYKGSL------DNITVIVINL 337
+ DN+T I++
Sbjct: 282 LAPHTRGDGTGCDNMTAIIVQF 303
Score = 58.5 bits (142), Expect = 7e-10
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKIIAQGLHK 59
ED N DD S AV+DGHGG A + +L T L +K + L +
Sbjct: 37 QEDAHNCILNFDD-QCSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKE 94
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 201 bits (513), Expect = 2e-62
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 29/209 (13%)
Query: 160 LLVDQRIVENAKKT-YDVAGTTALIAILEGTRLIVANVGDSRGVMC---DSKGNAIPLSF 215
D +V+ ++ D A +T++ A+L + V ++GDSR M + N L+
Sbjct: 118 KNADNELVKMCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETPNGLNCEFLTV 177
Query: 216 DHKPQQMRERKRIKEAGGFIAFNGV------------------WRVAGILATSRALGDYP 257
DHKP E+ RI GG + + L SRA G
Sbjct: 178 DHKPDMPHEKLRIMRNGGSVEYLHNHNNKPFIRGGDFSFRKSRGEQPMQLQYSRAFGGKD 237
Query: 258 LKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGE-----ELF 312
LK + PD+ ++ + + +ILA+DGLWD+ S +AV Q E +
Sbjct: 238 LKMY-GLSNQPDVRVVRVTP-QHRVMILATDGLWDVMSAAQAVEIAMQARQEGRNPAQAL 295
Query: 313 GAKSLTLQAYYKGSLDNITVIVINLMNYD 341
+L Q S DNIT + + D
Sbjct: 296 VEMTLAEQQSRNQSADNITAMTVFFKKTD 324
Score = 60.5 bits (147), Expect = 2e-10
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 1 MEDRFVINENI--DDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
EDRF + + + VFDG G+FA+ +D ++ L
Sbjct: 36 QEDRFTLCPQLVPGRDDCAFFGVFDGTVGDFASENVKDLVVPQL 79
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 193 bits (491), Expect = 6e-59
Identities = 51/379 (13%), Positives = 98/379 (25%), Gaps = 102/379 (26%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKIIAQGLHKL 60
D+ + I D SL A+ GH G A A Q +
Sbjct: 37 SRDKKCLC--ISDNNTSLYAILSGHNGVTVAENA-------------------LQEMAAE 75
Query: 61 YPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRPI 120
+ K + I + ++
Sbjct: 76 LLL----------GQLNVCNTDEAVKELIRQSFMSVEKGYFDSINP-------HVATKTA 118
Query: 121 TREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTYDVAGTT 180
+ + + + + + ++ +N G++
Sbjct: 119 IQLHLSADGMNQYEISQQFENVLQKLDSLN----------------------NALSVGSS 156
Query: 181 ALIAILEGTRLIVANVGDSRGVMC----DSKGNAIPLSFDHKPQQMRERKRIKEAGGFIA 236
A++A++ + L + N+G+ R ++C LS DH E R+ G
Sbjct: 157 AVLALIHRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFRLGLMAQ 216
Query: 237 FN-----GVWRVAGILATSRALGDYPLK---DKKLVIADPDILTFDLSDHKPQFLILASD 288
R G D + VI +P+I+ +FL+L S
Sbjct: 217 NFEGVPLYSTRCIGNYLGKAGYKDCNFLSSATAEPVIFEPEIVGGIQITPACRFLVLMSS 276
Query: 289 GLWDIF----------SNEEAVNFIKQRLGE--------------------ELFGAKSLT 318
GL N E V I + + +
Sbjct: 277 GLCRALHEIFPGDASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEE 336
Query: 319 LQAYYKGSLDNITVIVINL 337
++ S D++T+++ N
Sbjct: 337 HRSVTFNSRDDVTLLIRNF 355
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 171 bits (434), Expect = 2e-49
Identities = 68/345 (19%), Positives = 127/345 (36%), Gaps = 68/345 (19%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSLNDKVIELKKIIAQGLHKL 60
+EDR + G L+ VFDGH G + + L + ++ + ++
Sbjct: 52 IEDRRSATTCLQTRG-MLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLL------- 103
Query: 61 YPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRPI 120
++ S R + N S+ + + + + +
Sbjct: 104 ---------------EIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQEL 148
Query: 121 TREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTYDVAGTT 180
+++ + V+ I+++ ++ I+ V D ++ ++ A +G T
Sbjct: 149 I-DLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVA-----FSGAT 202
Query: 181 ALIAILEGTRLIVANVGDSRGVMC----DSKGNAIPLSFDHKPQQMRERKRIKEAGGFIA 236
A +A ++G L VAN GDSR ++ D +A+ LS DH Q RE +R+K
Sbjct: 203 ACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNE 262
Query: 237 FNGV---WRVAGILATSRALGDYPLKDKK------------------------------- 262
V R+ G+L RA GD K
Sbjct: 263 AKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPP 322
Query: 263 LVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRL 307
+ A+P++ L +FL+LA+DGLW+ ++ V + + L
Sbjct: 323 YLTAEPEVTYHRLRPQ-DKFLVLATDGLWETMHRQDVVRIVGEYL 366
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 164 bits (416), Expect = 2e-47
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 23/176 (13%)
Query: 177 AGTTALIAILEGTRLIVANVGDSRGVMC---DSKGNAIPLSFDHKPQQMRERKRIKEAGG 233
G A++A+L +L VANVG +R ++C L+ DH + E R+ + G
Sbjct: 164 GGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGL 223
Query: 234 FI-AFNGVWRVAGILATSRALGDYPLK------------DKKLVIADPDILTFDLSDHKP 280
V + G ++R +GDY +K K +IA+P+I D
Sbjct: 224 DAGKIKQVGIICG-QESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVT 282
Query: 281 QFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAYYKGSLDNITVIVIN 336
FL+L S+GL+ Q + A + + + SLD + V++
Sbjct: 283 GFLVLMSEGLYKALEAAHGPGQANQEI------AAMIDTEFAKQTSLDAVAQAVVD 332
Score = 55.4 bits (133), Expect = 1e-08
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
ED ++ + + L VF+G+ G NF L L
Sbjct: 49 PEDSWL--KFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAEL 88
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 76.5 bits (189), Expect = 2e-16
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 25/206 (12%)
Query: 133 VVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTYDVA--GTTALIAILEGTR 190
V+ ++ + + + + V + I + D+ GTT + G R
Sbjct: 50 VIAA--LAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFAGNR 107
Query: 191 LIVANVGDSRGVMCDSKGNAIPLSFDHKP-QQMRERKRIKEAGGFIAFNGVWRVAGILAT 249
L + ++GDSRG + G ++ D Q + + RI A + R ++
Sbjct: 108 LGLVHIGDSRGYLL-RDGELTQITKDDTFVQTLVDEGRITPEE---AHSHPQR--SLI-- 159
Query: 250 SRALGDYPLKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGE 309
RAL + + +P + + +L SDGL D S+E + ++
Sbjct: 160 MRALTGHEV--------EPTLTMREARAG--DRYLLCSDGLSDPVSDETILEALQIPEVA 209
Query: 310 ELFGAKSLTLQAYYKGSLDNITVIVI 335
E A L A G DN+TV+V
Sbjct: 210 ES--AHRLIELALRGGGPDNVTVVVA 233
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 73.8 bits (182), Expect = 2e-15
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 153 KLVTDEVLLVDQRIVENAKKT-YDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAI 211
+ + +++I E + Y GTT + G +I A+VGDSR + +G
Sbjct: 77 DWMLVSIETENRKIYELGQSDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIV-RQGEYH 135
Query: 212 PLSFDHKP-QQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADPDI 270
L+ DH ++ + ++ E A + + I+ ++++G +PD+
Sbjct: 136 LLTSDHSLVNELVKAGQLTEE---EAASHPQK--NII--TQSIGQAN-------PVEPDL 181
Query: 271 LTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEEL---FGAKSLTLQAYYKGSL 327
L + +L++ SDGL ++ SN + I L +E + L A ++G L
Sbjct: 182 GVHLLEEG--DYLVVNSDGLTNMLSNAD----IATVLTQEKTLDDKNQDLITLANHRGGL 235
Query: 328 DNITVIVI 335
DNITV ++
Sbjct: 236 DNITVALV 243
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 70.0 bits (172), Expect = 3e-14
Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 29/188 (15%)
Query: 156 TDEVLLVDQRIVENAKKTYDVAG----TTALIAILEGTRLIVANVGDSRG-VMCDSKGNA 210
D VL + A + + L L A+VGD R + G
Sbjct: 47 LDAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLRDGTLEWASVGDCRVYLF--KGGRL 104
Query: 211 IPLSFDH-KPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADPD 269
LS DH +M G G ++ + +G L
Sbjct: 105 SRLSLDHNVSSEMVLL-------GRGPVPGPAG--EMI--TSFIGIEN-----LTEISTS 148
Query: 270 ILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAYYKGSLDN 329
L + +++ SDG++ + + + ++A + DN
Sbjct: 149 EAPLPLEAG--EGVLVVSDGVYRSLHEDRIAMALSRGSDAR---GILQEVEAQGRPYQDN 203
Query: 330 ITVIVINL 337
T+ ++ L
Sbjct: 204 ATLALVIL 211
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 70.3 bits (173), Expect = 3e-14
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 152 IKLVTDEVLLVDQRIVENAKKTYDVA--GTT--ALIAILEGTRLIVANVGDSRGVMCDSK 207
+ L+ L + IVE ++ A GTT ++ +G R A+VGDSR K
Sbjct: 69 VTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRW-RK 127
Query: 208 GNAIPLSFDHKP-QQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIA 266
++ DH Q + + A WR +L S+ LG L +
Sbjct: 128 DQLQQITSDHTWIAQAVQLGSLTIE---QARQHPWR--HVL--SQCLGREDL-------S 173
Query: 267 DPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAYYKGS 326
DI DL L+L SDGL + +++ ++ + ++ A +L A G
Sbjct: 174 QIDIQPIDLEPG--DRLLLCSDGLTEELTDDVISIYLSEPNVQKA--AAALVDAAKTHGG 229
Query: 327 LDNITVIVI 335
DN+TV+VI
Sbjct: 230 RDNVTVVVI 238
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 69.9 bits (172), Expect = 4e-14
Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 25/187 (13%)
Query: 154 LVTDEVLLVDQRIVENAKKTYDVAG--TTALIAILEGT-RLIVANVGDSRG-VMCDSKGN 209
+ + V + R+ E V+G TA+ G +V N+GDS + D G+
Sbjct: 65 GLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIRD--GH 122
Query: 210 AIPLSFDHKP-QQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKKLVIADP 268
L+ DH ++ I A R +L +RALG P P
Sbjct: 123 MEQLTDDHSVAGELVRMGEITRHE---ARWHPQR--HLL--TRALGIGP-------HIGP 168
Query: 269 DILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELFGAKSLTLQAYYKGSLD 328
D+ D L+++SDGL+ V+ + + L A G D
Sbjct: 169 DVFGIDCGPG--DRLLISSDGLFAAADEALIVDAATSPDPQVA--VRRLVEVANDAGGSD 224
Query: 329 NITVIVI 335
N TV+VI
Sbjct: 225 NTTVVVI 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 6e-05
Identities = 51/314 (16%), Positives = 89/314 (28%), Gaps = 127/314 (40%)
Query: 5 FVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMT----SLNDKVIELKKIIAQGLHKL 60
F I + + + V+L F G G+ R+N ++ D ++ +KI +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGK----RIRENYSAMIFETIVDGKLKTEKIFKE----- 1709
Query: 61 YPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQIT---DPELLSRINSLS 117
N S+ T + LLS
Sbjct: 1710 ------------------------------------INEHSTSYTFRSEKGLLSA----- 1728
Query: 118 RPITREVHNTSNTSSVVETVEISSY--IEVNGKIN------------YIKLVT------- 156
T T + +E +++ ++ G I Y L +
Sbjct: 1729 ---------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 157 -DEVLLVDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSF 215
V +V R G T +A+ +G S M + SF
Sbjct: 1780 ESLVEVVFYR------------GMTMQVAVPRD------ELGRSNYGMIAINPGRVAASF 1821
Query: 216 DHKPQQMRERKRIKEAGGF--IA-FN--G---VWRVAGILATSRALG------DYPLKDK 261
+ Q + K G I +N V AG RAL ++ +K +
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--AAG---DLRALDTVTNVLNF-IKLQ 1875
Query: 262 KLVIAD-PDILTFD 274
K+ I + L+ +
Sbjct: 1876 KIDIIELQKSLSLE 1889
Score = 40.0 bits (93), Expect = 0.001
Identities = 57/361 (15%), Positives = 106/361 (29%), Gaps = 151/361 (41%)
Query: 4 RFV--INENIDDTGVS-----LIAVFDGHGGEFAANFARDN--------LMTSLNDKVIE 48
+F+ ++ ++ + V L EF + N L+ + +++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLT----EFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 49 LKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECS------GTKNSSSS 102
K++I K Y T + RP K +L + G
Sbjct: 119 TKELI-----KNY--ITARIM--AKRPFDKKSNSALFRAVGEGNAQLVAIFGG------- 162
Query: 103 Q-ITD---PELLSRINSLSRPITREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVTDE 158
Q TD EL R+++ T + V + ++ S+ E
Sbjct: 163 QGNTDDYFEEL------------RDLYQTYH-VLVGDLIKFSA----------------E 193
Query: 159 VLLVDQRIVENAKKTY----DVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLS 214
L R +A+K + ++ + LE + + + +IP+S
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNI------LEWLEN-----PSNTPDKDYLL-----SIPIS 237
Query: 215 FDHKPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYP--LKD---------KKL 263
P GV ++A + T++ LG P L+ + L
Sbjct: 238 C---P-----------------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 264 VIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEELF--GAKSLTLQA 321
V A + +A W+ F I LF G + +A
Sbjct: 278 VTA----------------VAIAETDSWESF-FVSVRKAI-----TVLFFIGVRC--YEA 313
Query: 322 Y 322
Y
Sbjct: 314 Y 314
Score = 39.6 bits (92), Expect = 0.002
Identities = 75/426 (17%), Positives = 121/426 (28%), Gaps = 164/426 (38%)
Query: 9 ENIDDTGVSLIAVFDGHG--------------------GEFAANFARDNLMTSLNDKVIE 48
+ + L+A+F G G G+ A ++ L ++
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLD 204
Query: 49 LKKIIAQGLHKLYPMYTPNKPPPSPR--------P----SQKSPKPSLRKNATTDECSGT 96
+K+ QGL+ L + P+ P P Q L T + G
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ------LAHYVVTAKLLG- 257
Query: 97 KNSSSSQITDPELLSRINSLSRPITREVHNTSNTSSVVETVEISSYIEVNGKINYIKLVT 156
T EL S + T ++ +V V I+ T
Sbjct: 258 -------FTPGELRSYLKGA----------TGHSQGLVTAVAIAE--------------T 286
Query: 157 DEVLLVDQRIVENAKKTYDVAGTTALIAILEGTR---------LIVANVGDSRGVMCDSK 207
D + + +K T L I G R L + + DS
Sbjct: 287 DS----WESFFVSVRKAI-----TVLFFI--GVRCYEAYPNTSLPPSILEDSLEN----- 330
Query: 208 GNAIP---LSFDHKPQQMRERKRIKEAGG--------FIA-FNG----VWRVAGILATSR 251
+P LS + Q+ + + + I+ NG V V+G +
Sbjct: 331 NEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLV--VSG---PPQ 384
Query: 252 ALGDYPL-----KDKKLVIADPDILTFD-----LSDHKP----QFL-ILA---SDGLWDI 293
+L Y L K K A + D S+ K +FL + + S L
Sbjct: 385 SL--YGLNLTLRKAK----APSGL---DQSRIPFSERKLKFSNRFLPVASPFHSHLL--- 432
Query: 294 FSNEEAVNFIKQRL--GEELFGAKSLTLQAY----------YKGSLDNITVIVINLMNYD 341
A + I + L F AK + + Y GS+ V I +
Sbjct: 433 ---VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 342 WAKAAQ 347
W Q
Sbjct: 490 WETTTQ 495
Score = 38.1 bits (88), Expect = 0.004
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 62/176 (35%)
Query: 1 MEDRFVINENIDDTGVSLIAVFDGHG-GEFAANFARDNLMTSLNDKVIELKKIIAQ-GL- 57
++ + +I + A F GH GE+AA + ++M S+ V +++ G+
Sbjct: 1747 LKSKGLIPAD---------ATFAGHSLGEYAALASLADVM-SIESLV----EVVFYRGMT 1792
Query: 58 -----------HKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITD 106
Y M N P + + S + A +
Sbjct: 1793 MQVAVPRDELGRSNYGMIAIN-------PGRVA--ASFSQEALQYVVERVGKRTG----- 1838
Query: 107 PELLSRINSLSRPITREVHNTSNTSSV-------VETV-EISSYIEVNGKINYIKL 154
L+ +N +N N V ++TV + ++I++ KI+ I+L
Sbjct: 1839 -WLVEIVN----------YNVENQQYVAAGDLRALDTVTNVLNFIKLQ-KIDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 27/112 (24%)
Query: 255 DYPLKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNFIKQRLGEE---- 310
Y KD V D + FD D D I S EE + I +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKD--------VQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 311 LFG----AKSLTLQAYYKGSLDNITVIVINLMNYDW--AKAAQEDRKKNLSR 356
LF + +Q + + L NY + + E R+ ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRI---------NYKFLMSPIKTEQRQPSMMT 109
Score = 38.3 bits (88), Expect = 0.003
Identities = 52/401 (12%), Positives = 108/401 (26%), Gaps = 125/401 (31%)
Query: 21 VFDGHGGE----FAANFARDN-LMTSLNDKV--IELKK------IIAQGLHKLYPMYTPN 67
+ DG G A + + ++ K+ + LK ++ L KL PN
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPN 212
Query: 68 KPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRI-------NSLSRPI 120
+ R S LR ++ E L R+ N L +
Sbjct: 213 W---TSRSDH-SSNIKLRIHSIQAE-----------------LRRLLKSKPYENCLL--V 249
Query: 121 TREVHN---------------TSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQR 165
V N T+ V + + ++ ++ + + L DEV + +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 166 IVENAKKTYDV---AGTTALIAILEGTRLIVANVGD-------SRGVMCDSKGNAIPLSF 215
++ + D+ TT + +I ++ D + V CD I S
Sbjct: 310 YLDC--RPQDLPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 216 DH-KPQQMRERKRIKEAGGFIAF----NGVW---RVAGIL---ATSRALGDY--PLKDKK 262
+ +P + R+ F + ++ + L
Sbjct: 364 NVLEPAEYRKM--------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 263 LVIADPDILTFDLSD---------------HKP---QFLILASDGLWDIFSNEEAVNFIK 304
LV P T + H+ + I + D+ +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFY 474
Query: 305 QRLGEELFGAKSLTLQAYYKGSLDNITVIVINLMNYDWAKA 345
+G L + + +++ + +
Sbjct: 475 SHIGHHLKNIE----HPERMTLFRMV------FLDFRFLEQ 505
Score = 38.3 bits (88), Expect = 0.004
Identities = 59/424 (13%), Positives = 123/424 (29%), Gaps = 115/424 (27%)
Query: 2 EDRFVINENIDDTGVS-LIAVFDGHGGEFAANFA----RDN---LMTSL----NDKVIEL 49
E +I +G L E F R N LM+ + +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 50 KKIIAQGLHKLY---PMYTP-NKPPPSP-----------RPSQK--------SPKPSLRK 86
+ I Q +LY ++ N P RP++ S K +
Sbjct: 110 RMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 87 NATTDECSGTKNS------SSSQITDPE-LLSRINSLSRPI----TREVHNTSNTSSVVE 135
+ K + PE +L + L I T ++SN +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 136 TV--EISSYIEVNGKINYIK--LVTDEVLLVDQRIVENAKKTYDVAG-----TT---ALI 183
++ E+ ++ Y LV V + + +++ TT +
Sbjct: 229 SIQAELRRLLKSK---PYENCLLVLLNVQ--NAKAW----NAFNL-SCKILLTTRFKQVT 278
Query: 184 AILEGTRLIVANVGDSRGVMCDSKGNAIPLSF-DHKPQQMRERKRIKEAGGFIAFNGVWR 242
L ++ + + ++ L + D +PQ + R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----------VLTTNPR 328
Query: 243 VAGILATSRALGDYP---------LKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDI 293
I+A S + D DK I + + + ++++ F L+ +
Sbjct: 329 RLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS------V 380
Query: 294 FSNEEAVNFIKQRLGEELFGAKSLTLQAYYKGSLDNITVIVIN-LMNYDWAKAAQEDRKK 352
F + + I ++ L + + + ++V+N L Y ++ K+
Sbjct: 381 F--PPSAH-I-----------PTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKE 423
Query: 353 NLSR 356
+
Sbjct: 424 STIS 427
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.015
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 17/44 (38%)
Query: 48 ELKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTD 91
LKK+ Q KLY + P+L AT +
Sbjct: 21 ALKKL--QASLKLY---ADDS------------APALAIKATME 47
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2,
prote structure initiative; 2.40A {Agrobacterium
tumefaciens} SCOP: a.295.1.1
Length = 323
Score = 34.0 bits (77), Expect = 0.064
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 70 PPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSRINSLSRPITREVHNTSN 129
PPSP+P +L + T C+ S+ S + + +S+ I + + S
Sbjct: 20 PPSPQPVSHKQAATLCRQGRT--CALKSGSNESGGSVTSTYTSYRLISQDIGKSLERVSK 77
Query: 130 TSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTYD 175
V E Y E KI +K + D + D R+ A K +
Sbjct: 78 QPDVAR--ETEYYRE---KIGSVKSIDD--FMADTRLYNYALKAHG 116
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer,
NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Length = 245
Score = 28.5 bits (63), Expect = 3.0
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 64 YTPNKPPPSPRPSQKSPKPSLRKNATTDECSGTKNSSSSQITDPELLSR-INSLSRP 119
+ + P + ++K + +K + + + LSR + +
Sbjct: 9 HHSSGLVPRGSHMETLSYSQIKKRKADFDEDISKRARQLPVGEQLPLSRLLQYSDKQ 65
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Length = 142
Score = 27.1 bits (60), Expect = 4.6
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 55 QGLHKLYPMYTPNKPPPSPRPSQKSPKPSLRKNATTDE 92
+ K +P P QK P P LR+N T
Sbjct: 103 DQVFKPLDPGSPQLPEHLE-SQQKRPNPELRRNMTIKT 139
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 305
Score = 27.4 bits (60), Expect = 7.8
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 159 VLLVDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHK 218
+ D ++ D + + ++ + + G+ V ++ +PL H
Sbjct: 133 AVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHI 192
Query: 219 P 219
P
Sbjct: 193 P 193
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 49 LKKIIAQGLHKLYPMYTPNKPPPSPRPSQKSP 80
+ + Q ++Y + P +P SPR + SP
Sbjct: 403 VSETSQQNFVEIYDVLHPLQPRLSPRNLRVSP 434
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein,
membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY
C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB:
2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A*
3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 27.5 bits (62), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 166 IVENAKKTYDVAGTTALIAILEGTRL 191
IVE AK D G + A L+ R+
Sbjct: 945 IVEFAKDLMDKEGKGLIEATLDAVRM 970
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 27.1 bits (61), Expect = 9.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 164 QRIVENAKKTYDVAG---TTALI---AIL-EGTRLIVA 194
Q + E A KT DVAG TTA + AI+ EG + + A
Sbjct: 71 QLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAA 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,412,658
Number of extensions: 334277
Number of successful extensions: 940
Number of sequences better than 10.0: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 57
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)