RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14703
         (356 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score =  117 bits (293), Expect = 4e-31
 Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 14/175 (8%)

Query: 175 DVAGTTALIAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGF 234
           D +G+TA+  ++        N GDSRG++C ++      + DHKP    E++RI+ AGG 
Sbjct: 122 DRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKV-HFFTQDHKPSNPLEKERIQNAGGS 180

Query: 235 IAFNGVWRVAGILATSRALGDYPLK-------DKKLVIADPDILTFDLSDHKPQFLILAS 287
                + RV G LA SRALGD+  K        ++LV  +P++   + S+   QF+ILA 
Sbjct: 181 ---VMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILAC 237

Query: 288 DGLWDIFSNEEAVNFIKQRLGEEL---FGAKSLTLQAYYKGSLDNITVIVINLMN 339
           DG+WD+  NEE  +F++ RL            +     YKGS DN++VI+I   N
Sbjct: 238 DGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPN 292



 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 1  MEDRFVI--NENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
          MED               S  AV+DGH G   A +  ++L+  +
Sbjct: 35 MEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHI 78


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 71.5 bits (174), Expect = 5e-15
 Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 21/217 (9%)

Query: 125 HNTSNTSSVVETVEISSYIEVNGKINYIKLVTDEVLLVDQRIVENAKKTYDVAGTTA--L 182
           H     +S +    ++   +     + +  +   V   +  I    +   D+ G      
Sbjct: 38  HAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLT 97

Query: 183 IAILEGTRLIVANVGDSRGVMCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAFNGVWR 242
             +  G RL + ++GDSRG +    G    ++ D    Q    +      G I       
Sbjct: 98  AILFAGNRLGLVHIGDSRGYLL-RDGELTQITKDDTFVQTLVDE------GRITPEEAHS 150

Query: 243 VAGILATSRALGDYPLKDKKLVIADPDILTFDLSDHKPQFLILASDGLWDIFSNEEAVNF 302
                   RAL  +          +P +   +         +L SDGL D  S+E  +  
Sbjct: 151 HPQRSLIMRALTGHE--------VEPTLTMREARAG--DRYLLCSDGLSDPVSDETILEA 200

Query: 303 IKQRLGEELFGAKSLTLQAYYKGSLDNITVIVINLMN 339
           ++     E   A  L   A   G  DN+TV+V +L +
Sbjct: 201 LQIPEVAES--AHRLIELALRGGGPDNVTVVVADLEH 235



 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 1  MEDRFVINENIDDTGVSLIAVFDGHGGEFAANFARDNLMTSL 42
           ED              L+A+ DG GG  A   A   ++ +L
Sbjct: 18 NEDSVYAGAR-------LLALADGMGGHAAGEVASQLVIAAL 52


>d1nh1a_ e.45.1.1 (A:) Type III effector AvrB {Pseudomonas syringae
           [TaxId: 317]}
          Length = 290

 Score = 27.2 bits (60), Expect = 2.8
 Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 10/68 (14%)

Query: 212 PLSFDHKPQQMRE----RKRIKEAGGFIA------FNGVWRVAGILATSRALGDYPLKDK 261
             S  + P+           I+ AG  I+      F  +W  A     S+     PL   
Sbjct: 26  DSSKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSA 85

Query: 262 KLVIADPD 269
                  D
Sbjct: 86  FASERTSD 93


>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 298

 Score = 26.5 bits (58), Expect = 5.6
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 16/140 (11%)

Query: 149 INYIKLVTDEVLLVDQRIVENAKKTYDVAGTTALIAILEGTRLIVANVGDSRG------V 202
           +  +++   +  L D  ++         AG  A + I     + +   G S+        
Sbjct: 13  LAALRIT--KNRLSDHTVLFQG------AGE-AALGIANLIVMAMQKEGVSKEEAIKRIW 63

Query: 203 MCDSKGNAIPLSFDHKPQQMRERKRIKEAGGFIAFNGVWRVAGILATSRALGDYPLKDKK 262
           M DSKG  +       P++        E           +   ++  +   G +  +  +
Sbjct: 64  MVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQ 123

Query: 263 LVIAD-PDILTFDLSDHKPQ 281
            + A     + F LS+   +
Sbjct: 124 DMAAFNKRPIIFALSNPTSK 143


>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
           TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 26.0 bits (57), Expect = 6.4
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 222 MRERKRIKEAGGFIAFNGVWRVAGILATSRALGDY 256
            +ER  + +A G         V  +++ ++ L D+
Sbjct: 160 AKERASLMKAHGETGRKYQGEVMQVISGAQGLDDW 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,286,435
Number of extensions: 59987
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 11
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)