BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14704
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5X|A Chain A, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
pdb|2P5X|B Chain B, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
Length = 230
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 109/159 (68%), Gaps = 11/159 (6%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQ 72
++VLAS+SPRR +IL + GL+FEV+PS F E + + F + YG Y E A +KALEV+
Sbjct: 5 RVVLASASPRRQEILSNAGLRFEVVPSKFKEK-LDKASFATPYG-YAMETAKQKALEVAN 62
Query: 73 HLKEDNVE-PDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAIL--- 128
L + ++ PD++IGADT+V++ ++L KP D+++A LS+LSG HSVFTGVAI+
Sbjct: 63 RLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCS 122
Query: 129 TKDK--DSR---FYNQTQVTFANLTPAVISAYVKTREPL 162
+KD D+R FY +T+V F+ L+ ++ YV + EP+
Sbjct: 123 SKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPM 161
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 91/152 (59%), Gaps = 15/152 (9%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYG--EYVSELAYKKALEVS 71
++LAS SPRR ++L + L + +I S +E K N+ E V LA +KA V+
Sbjct: 5 LILASQSPRRKELLDLLQLPYSIIVSEVEE------KLNRNFSPEENVQWLAKQKAKAVA 58
Query: 72 QHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
++ P ++IGADT+V ++ LGKP+D+EEA L +LSG +HSV T V+I +
Sbjct: 59 ------DLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAE 112
Query: 131 DKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+ FY++T+V F +L+ I Y++T+EP+
Sbjct: 113 NHSETFYDKTEVAFWSLSEEEIWTYIETKEPM 144
>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
Length = 210
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 91/152 (59%), Gaps = 15/152 (9%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYG--EYVSELAYKKALEVS 71
++LAS SPRR ++L + L + +I S +E K N+ E V LA +KA V+
Sbjct: 26 LILASQSPRRKELLDLLQLPYSIIVSEVEE------KLNRNFSPEENVQWLAKQKAKAVA 79
Query: 72 QHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
++ P ++IGADT+V ++ LGKP+D+EEA L +LSG +HSV T V+I +
Sbjct: 80 ------DLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAE 133
Query: 131 DKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+ FY++T+V F +L+ I Y++T+EP+
Sbjct: 134 NHSETFYDKTEVAFWSLSEEEIWTYIETKEPM 165
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 23/101 (22%)
Query: 50 KFKSNYGEYVSELAYKKAL-EVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAK 108
KFK + E V+ L YKK L E S H + +DM + DEE+ +
Sbjct: 79 KFKFGFNEVVTPLIYKKTLWEKSGHWEN---------------YADDMFKVETTDEEKEE 123
Query: 109 EFLSKLSGNTHSVFTGVAILTKDKDSRFYNQTQVTFANLTP 149
L ++ H + G K R YN+ + F++ +P
Sbjct: 124 YGLKPMNCPGHCLIFG-------KKDRSYNELPLRFSDFSP 157
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 85 IGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTG 124
+GADT V D+ +G E A + KLS NT VFTG
Sbjct: 158 LGADTDVPAGDIGVGGREVGFMAG-MMKKLSNNTACVFTG 196
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 85 IGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTG 124
+GADT V D+ +G E A + KLS NT VFTG
Sbjct: 161 LGADTDVPAGDIGVGGREVGFMAG-MMKKLSNNTACVFTG 199
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 85 IGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTG 124
+GADT V D+ +G E A + KLS NT VFTG
Sbjct: 158 LGADTDVPAGDIGVGGREVGFMAG-MMKKLSNNTACVFTG 196
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 6 MGQLNNLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYK 65
MG ++++KI+LA +S R K GL IP +E V F +NY E + +
Sbjct: 144 MGFIDDIKIILAQTSNR-----KITGLFSATIP---EEIRKVVKDFITNYEEIEACIGLA 195
Query: 66 KALEVSQHLKED 77
H+K+D
Sbjct: 196 NVEHKFVHVKDD 207
>pdb|4E38|A Chain A, Crystal Structure Of Probable
Keto-Hydroxyglutarate-Aldolase From Vibrionales
Bacterium Swat-3 (Target Efi-502156)
pdb|4E38|B Chain B, Crystal Structure Of Probable
Keto-Hydroxyglutarate-Aldolase From Vibrionales
Bacterium Swat-3 (Target Efi-502156)
pdb|4E38|C Chain C, Crystal Structure Of Probable
Keto-Hydroxyglutarate-Aldolase From Vibrionales
Bacterium Swat-3 (Target Efi-502156)
Length = 232
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 36 VIPSNFDESSIPVSKFKSNYGEYVSELAYKK--ALEVSQHLKEDNVEPDLIIGADTVVS 92
VI + E IP+ K + G +E+ ++ A+E + L++ +P+++IGA T+++
Sbjct: 39 VIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQ--AQPEMLIGAGTILN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,459,446
Number of Sequences: 62578
Number of extensions: 171855
Number of successful extensions: 432
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 15
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)