Query psy14704
Match_columns 162
No_of_seqs 202 out of 1071
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:31:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex2_A Protein MAF; structural 100.0 4.5E-54 1.5E-58 338.6 21.1 143 11-162 2-144 (189)
2 2p5x_A ASMTL, N-acetylserotoni 100.0 1.7E-52 5.7E-57 338.4 20.5 152 9-162 1-161 (230)
3 2amh_A Septum formation protei 100.0 2.1E-52 7.4E-57 333.1 19.6 149 10-162 7-165 (207)
4 1vp2_A Putative xanthosine tri 96.9 0.021 7.1E-07 44.9 12.5 107 7-130 11-134 (208)
5 2car_A Inosine triphosphate py 96.2 0.15 5.1E-06 39.6 13.1 108 6-130 4-125 (196)
6 3tqu_A Non-canonical purine NT 96.1 0.09 3.1E-06 41.1 11.6 105 12-129 5-129 (203)
7 1k7k_A Hypothetical protein YG 95.9 0.19 6.6E-06 39.7 12.6 105 13-131 25-150 (221)
8 1v7r_A Hypothetical protein PH 95.9 0.26 8.7E-06 37.9 12.8 103 13-131 2-117 (186)
9 1b78_A Pyrophosphatase; struct 95.4 0.26 8.8E-06 38.2 11.5 101 12-129 9-123 (193)
10 1zwy_A Hypothetical UPF0244 pr 49.7 81 0.0028 23.8 9.3 83 2-98 3-91 (185)
11 1gtk_A Porphobilinogen deamina 44.4 15 0.00051 30.3 3.0 25 14-38 123-147 (313)
12 3ecr_A Porphobilinogen deamina 40.7 18 0.00062 30.4 3.0 25 14-38 144-168 (364)
13 2r47_A Uncharacterized protein 39.3 31 0.001 25.7 3.8 43 86-129 84-127 (157)
14 4a2c_A Galactitol-1-phosphate 38.4 44 0.0015 26.4 5.0 33 7-39 181-213 (346)
15 3gge_A PDZ domain-containing p 36.7 71 0.0024 21.4 5.1 35 83-119 46-81 (95)
16 1w2w_B 5-methylthioribose-1-ph 36.3 20 0.00069 27.1 2.5 39 81-122 53-91 (191)
17 4g9b_A Beta-PGM, beta-phosphog 35.3 45 0.0015 24.8 4.4 29 10-38 110-140 (243)
18 1vb5_A Translation initiation 34.5 1.7E+02 0.0057 23.0 7.8 101 9-123 107-218 (276)
19 2kta_A Putative helicase; PSI, 34.3 18 0.00061 23.4 1.6 18 18-35 49-66 (74)
20 2lqo_A Putative glutaredoxin R 32.3 34 0.0011 22.5 2.8 70 22-120 19-88 (92)
21 2z1c_A Hydrogenase expression/ 31.8 41 0.0014 21.7 3.1 28 87-115 39-66 (75)
22 4b4k_A N5-carboxyaminoimidazol 31.7 34 0.0011 26.0 3.0 28 13-40 26-58 (181)
23 1lss_A TRK system potassium up 28.4 49 0.0017 21.9 3.2 22 12-33 96-117 (140)
24 3k2t_A LMO2511 protein; lister 27.9 63 0.0022 19.7 3.3 24 99-123 10-33 (57)
25 1u6t_A SH3 domain-binding glut 26.5 46 0.0016 23.3 2.8 25 13-37 3-36 (121)
26 2db5_A INAD-like protein; PDZ 26.0 1E+02 0.0035 20.7 4.6 34 84-118 73-106 (128)
27 3op1_A Macrolide-efflux protei 24.5 39 0.0013 27.5 2.4 39 18-62 79-117 (308)
28 2a0u_A Initiation factor 2B; S 23.3 56 0.0019 27.5 3.2 81 29-123 207-297 (383)
29 2yvk_A Methylthioribose-1-phos 22.5 60 0.002 27.2 3.2 81 29-123 203-293 (374)
30 1t5o_A EIF2BD, translation ini 22.4 60 0.0021 26.9 3.2 80 29-123 176-265 (351)
31 1t9k_A Probable methylthioribo 21.8 64 0.0022 26.7 3.2 41 80-123 228-268 (347)
32 3ecs_A Translation initiation 21.8 3.2E+02 0.011 22.1 8.7 98 9-123 119-230 (315)
33 3ewl_A Uncharacterized conserv 21.6 57 0.002 21.6 2.5 24 94-117 119-142 (142)
34 2d92_A INAD-like protein; PDZ 21.0 1.3E+02 0.0043 19.6 4.1 32 85-117 64-95 (108)
35 3sfj_A TAX1-binding protein 3; 20.7 1.6E+02 0.0056 18.6 4.6 33 86-119 65-97 (104)
36 3ka5_A Ribosome-associated pro 20.5 1.1E+02 0.0036 19.3 3.3 24 99-123 10-33 (65)
37 3ik5_A Protein NEF; protein-pr 20.4 66 0.0022 23.4 2.6 24 19-42 42-91 (143)
38 3a11_A Translation initiation 20.3 35 0.0012 28.1 1.3 100 10-123 140-250 (338)
No 1
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=100.00 E-value=4.5e-54 Score=338.57 Aligned_cols=143 Identities=37% Similarity=0.600 Sum_probs=134.7
Q ss_pred CCcEEEecCCHHHHHHHHhCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEeceE
Q psy14704 11 NLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGADTV 90 (162)
Q Consensus 11 ~~~iILAS~SprR~~lL~~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~~~vI~aDTv 90 (162)
+.+|||||+||||++||+++|++|++++++|| |+..+++ +|.+||.++|++||++|+.+++ ++ +|||||||
T Consensus 2 ~~~lILAS~SPrR~eLL~~~gi~f~v~~~~iD-E~~~~~~---~p~~~v~~lA~~KA~av~~~~~----~~-~VigaDTv 72 (189)
T 1ex2_A 2 TKPLILASQSPRRKELLDLLQLPYSIIVSEVE-EKLNRNF---SPEENVQWLAKQKAKAVADLHP----HA-IVIGADTM 72 (189)
T ss_dssp CCCEEECCCCHHHHHHHHTTCCCCEECCCCCC-CCCCTTS---CHHHHHHHHHHHHHHHHHHHCT----TS-EEEEEEEE
T ss_pred CCCEEEECCCHHHHHHHHhCCCCeEEECCCCC-CCCCCCC---CHHHHHHHHHHHHHHHHHHHcC----CC-eEEEeCeE
Confidence 34799999999999999999999999999999 9887777 8999999999999999998873 33 99999999
Q ss_pred EeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEEEEEEEECCcceEEEEEEEEEEcCCCHHHHHHHHHcCCCC
Q psy14704 91 VSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162 (162)
Q Consensus 91 V~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~Tgv~l~~~~~~~~~~~~t~V~F~~l~~~~I~~Yv~tgep~ 162 (162)
|++||+|||||.|++||++||+.|||++|+|||||||++.+...+++++|+|+|++||+++|++||++||||
T Consensus 73 V~~~g~ilgKP~~~~eA~~mL~~lsG~~h~v~Tgv~l~~~~~~~~~~~~t~V~F~~ls~~eI~~Yi~tgep~ 144 (189)
T 1ex2_A 73 VCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENHSETFYDKTEVAFWSLSEEEIWTYIETKEPM 144 (189)
T ss_dssp EEETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTEEEEEEEEEEEEECCCCHHHHHHHHTTTSGG
T ss_pred EEECCEEcCCCCCHHHHHHHHHHhCCCcEEEEEEEEEEECCEEEEEEEEEEEEEcCCCHHHHHHHHhhCCcc
Confidence 999999999999999999999999999999999999998666678999999999999999999999999996
No 2
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-52 Score=338.36 Aligned_cols=152 Identities=44% Similarity=0.721 Sum_probs=134.9
Q ss_pred cCCCcEEEecCCHHHHHHHHhCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCceEEEe
Q psy14704 9 LNNLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKED-NVEPDLIIGA 87 (162)
Q Consensus 9 l~~~~iILAS~SprR~~lL~~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~-~~~~~~vI~a 87 (162)
|++++|||||+||||++||+++|++|++++++|| |+..+.++. +|.+||.++|++||++|++++... ..++.+||||
T Consensus 1 l~~~~lILAS~SPrR~eLL~~~Gi~f~v~~~~iD-E~~~~~~~~-~p~~~v~~lA~~KA~av~~~~~~~~~~~~~~VIga 78 (230)
T 2p5x_A 1 LLHKRVVLASASPRRQEILSNAGLRFEVVPSKFK-EKLDKASFA-TPYGYAMETAKQKALEVANRLYQKDLRAPDVVIGA 78 (230)
T ss_dssp CTTSCEEECCCCHHHHHHHHHTTCCCEECCCCCC-CCCCGGGSS-SHHHHHHHHHHHHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred CCCCcEEEeCCCHHHHHHHHHCCCCeEEeCCCCC-CCCCccccC-CHHHHHHHHHHHHHHHHHHHhhhhccCCCCEEEEe
Confidence 4677899999999999999999999999999999 887765432 699999999999999998875210 1145799999
Q ss_pred ceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEEEEEEEEC-----Cc---ceEEEEEEEEEEcCCCHHHHHHHHHcC
Q psy14704 88 DTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK-----DK---DSRFYNQTQVTFANLTPAVISAYVKTR 159 (162)
Q Consensus 88 DTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~Tgv~l~~~-----~~---~~~~~~~t~V~F~~l~~~~I~~Yv~tg 159 (162)
||||++||+|||||.|++||++||+.|||++|+|||||||+.. +. ..+++++|+|+|++||+++|++||++|
T Consensus 79 DTvV~~dg~IlgKP~d~eeA~~mL~~lSG~~h~V~Tgv~l~~~~~~~~~~~~~~~~~~~~T~V~F~~lsd~eI~~Yi~tg 158 (230)
T 2p5x_A 79 DTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSG 158 (230)
T ss_dssp EEEEEETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHT
T ss_pred CeEEEECCEEecCCCCHHHHHHHHHHhCCCcEEEEEEEEEEecccCCCCcceeEEEEEEEEEEEEecCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999862 23 457889999999999999999999999
Q ss_pred CCC
Q psy14704 160 EPL 162 (162)
Q Consensus 160 ep~ 162 (162)
|||
T Consensus 159 ep~ 161 (230)
T 2p5x_A 159 EPM 161 (230)
T ss_dssp GGG
T ss_pred CCC
Confidence 996
No 3
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=100.00 E-value=2.1e-52 Score=333.06 Aligned_cols=149 Identities=17% Similarity=0.270 Sum_probs=135.1
Q ss_pred CCCcE-EEecCCHHHHHHHHhC----CCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCC---CC
Q psy14704 10 NNLKI-VLASSSPRRSQILKSI----GLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNV---EP 81 (162)
Q Consensus 10 ~~~~i-ILAS~SprR~~lL~~~----g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~---~~ 81 (162)
..++| ||||+||||++||+++ |++|++++++|| |+..+.+ +|.+||.++|++||++|++++..... ++
T Consensus 7 ~~~~l~ILAS~SPrR~eLL~~~~~~~gi~f~v~~~~iD-E~~~~~~---~p~~~v~~lA~~KA~av~~~~~~~~~~~~~~ 82 (207)
T 2amh_A 7 EEIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDID-EKAYRAA---DPFELTESIARAKMKAVLEKARQHSPPISGP 82 (207)
T ss_dssp CCCCEEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCC-GGGCCCS---SHHHHHHHHHHHHHHHHHHHHHTC------C
T ss_pred CCCcEEEEccCCHHHHHHHHhhhhcCCCCEEEECCCCC-CCCCCCC---CHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 35679 9999999999999999 999999999999 9888877 89999999999999999987631100 15
Q ss_pred ceEEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEEEEEEEE--CCcceEEEEEEEEEEcCCCHHHHHHHHHcC
Q psy14704 82 DLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILT--KDKDSRFYNQTQVTFANLTPAVISAYVKTR 159 (162)
Q Consensus 82 ~~vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~Tgv~l~~--~~~~~~~~~~t~V~F~~l~~~~I~~Yv~tg 159 (162)
.+||||||||++||+|||||.|++||++||+.|||++|+|||||||++ .+...+++++|+|+|++||+++|++||++|
T Consensus 83 ~~VIgaDTvV~~~g~IlgKP~~~e~A~~mL~~lsG~~h~v~Tgv~l~~~~~~~~~~~~~~t~V~F~~ls~~eI~~Yi~tg 162 (207)
T 2amh_A 83 AIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYALCVVGTENVLVAHNETETFFSKFGDDIVERTLERG 162 (207)
T ss_dssp EEEEEEEEEEEETTEEECSCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTCSCEEEEEEEEEEEECCCCHHHHHHHHHHC
T ss_pred CEEEEECeEEEECCEEcCCCCCHHHHHHHHHHhCCCcEEEEEEEEEEEcCCCEEEEEEEEEEEEEcCCCHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999998 445668999999999999999999999999
Q ss_pred CCC
Q psy14704 160 EPL 162 (162)
Q Consensus 160 ep~ 162 (162)
|||
T Consensus 163 ep~ 165 (207)
T 2amh_A 163 ACM 165 (207)
T ss_dssp GGG
T ss_pred Ccc
Confidence 996
No 4
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog; structural genomics, joint center for structural genomics, JCSG; 1.78A {Thermotoga maritima} SCOP: c.51.4.1
Probab=96.92 E-value=0.021 Score=44.94 Aligned_cols=107 Identities=18% Similarity=0.323 Sum_probs=72.7
Q ss_pred hhcCCCcEEEecCCHHHHHHHHh-CCCCeEEecCC----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy14704 7 GQLNNLKIVLASSSPRRSQILKS-IGLKFEVIPSN----FDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEP 81 (162)
Q Consensus 7 ~~l~~~~iILAS~SprR~~lL~~-~g~~f~v~~~~----~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~ 81 (162)
..+++++|++||+-+-..+=++. ++-.+++++.. ++ |+ +. ++ ..+|..||+++++.. +
T Consensus 11 ~~~~~~~iv~aT~N~~Kl~E~~~iL~~~iev~~~~~~~ei~-E~---g~---Tf----~eNA~~KA~~aa~~~------g 73 (208)
T 1vp2_A 11 HHMKKLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVV-ED---GE---TF----LENSVKKAVVYGKKL------K 73 (208)
T ss_dssp ----CEEEEESCCCHHHHHHHHTTCCTTEEEEECSSCCCCC-CC---CS---SH----HHHHHHHHHHHHHHH------C
T ss_pred hhcccCeEEEEcCCHHHHHHHHHHhhcCcEEEecccCCCCC-CC---CC---CH----HHHHHHHHHHHHHHH------C
Confidence 34567899999999988777765 43117777632 33 22 12 33 346888999998887 4
Q ss_pred ceEEEeceEEee---CCE-------EecCCCCHHHHHHHHHHcCC--CeEEEEEEEEEEEC
Q psy14704 82 DLIIGADTVVSI---NDM-------MLGKPEDEEEAKEFLSKLSG--NTHSVFTGVAILTK 130 (162)
Q Consensus 82 ~~vI~aDTvV~~---~g~-------IlgKP~~~~eA~~~L~~lsG--~~h~V~Tgv~l~~~ 130 (162)
.++|+-||=..+ +|. ..|...+.+.-...|+.|.| |+.+..+.+|+..+
T Consensus 74 ~pvlaDDSGL~VdAL~G~PGvySar~~g~~~d~~n~~~Ll~~L~~~~R~A~f~c~ia~~~~ 134 (208)
T 1vp2_A 74 HPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDP 134 (208)
T ss_dssp SCEEEEEEEEEEGGGTTEEGGGTTTTTTTSCHHHHHHHHHHHTTTSCCEEEEEEEEEEEET
T ss_pred CCEEeeccEEEEeccCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCCeEEEEEEEEEEEC
Confidence 579999997655 553 34655344555668888988 88999999999876
No 5
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Probab=96.22 E-value=0.15 Score=39.60 Aligned_cols=108 Identities=14% Similarity=0.208 Sum_probs=68.8
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHh-CC--CCeEEecC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCC
Q psy14704 6 MGQLNNLKIVLASSSPRRSQILKS-IG--LKFEVIPS--NFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVE 80 (162)
Q Consensus 6 ~~~l~~~~iILAS~SprR~~lL~~-~g--~~f~v~~~--~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~ 80 (162)
...+.+.+|++||+-+-..+=++. ++ +.+++++. +++ |+- . +++ .+|..||+.+++..
T Consensus 4 ~~~m~m~~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~~~~~~-E~~---~---tf~----enA~~KA~~a~~~~------ 66 (196)
T 2car_A 4 AASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLP-EYQ---G---EPD----EISIQKCQEAVRQV------ 66 (196)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEECCCCC-CBC---S---CHH----HHHHHHHHHHHHHH------
T ss_pred ccccccceEEEEcCCHHHHHHHHHHcCCCCCcEEEECCCCCC-CCC---C---CHH----HHHHHHHHHHHHHH------
Confidence 344555689999999987554443 33 34555554 444 431 2 443 46889999999887
Q ss_pred CceEEEeceEEee---CCE--EecCCC-CHHHHHHHHHHcCC---CeEEEEEEEEEEEC
Q psy14704 81 PDLIIGADTVVSI---NDM--MLGKPE-DEEEAKEFLSKLSG---NTHSVFTGVAILTK 130 (162)
Q Consensus 81 ~~~vI~aDTvV~~---~g~--IlgKP~-~~~eA~~~L~~lsG---~~h~V~Tgv~l~~~ 130 (162)
+.++|+-||=..+ ||. ++-|-. +.......|+.|.| |+.+..+.+|+..+
T Consensus 67 g~pvlaDDSGL~vdAL~G~PGvySar~~~~~~~~~ll~~L~~~~~R~A~f~c~ia~~~~ 125 (196)
T 2car_A 67 QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTG 125 (196)
T ss_dssp SSCEEEEEEEEEEGGGTTCEETTHHHHHHHHHHHHHHHTTTTCSCCEEEEEEEEEEECS
T ss_pred CCCEEeeccEEEEeccCCCCcchhhHhhhHhHHHHHHHHhcCCCCCcEEEEEEEEEEec
Confidence 4579999997655 442 111111 23444567888887 78888898988874
No 6
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=96.15 E-value=0.09 Score=41.06 Aligned_cols=105 Identities=23% Similarity=0.322 Sum_probs=67.2
Q ss_pred CcEEEecCCHHHHHHHHh-CC-CCeEEecC-CCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q psy14704 12 LKIVLASSSPRRSQILKS-IG-LKFEVIPS-NFDE-SSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGA 87 (162)
Q Consensus 12 ~~iILAS~SprR~~lL~~-~g-~~f~v~~~-~~de-E~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~~~vI~a 87 (162)
.+|++||+-+--.+=++. ++ +.+++++. +++- |-...+. +. ..+|..||+.+++.. +.++|+-
T Consensus 5 ~~iv~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~~~ei~E~g~---tf----~eNA~~KA~~~~~~~------g~pvlaD 71 (203)
T 3tqu_A 5 LEIVLASQNSSKLAEMQELLRDLEIKFIPQTEFSVPDIEETGS---TF----VENAIIKARHAAKQT------GLPALAD 71 (203)
T ss_dssp EEEEECCCCHHHHHHHHHHTTTSSEEEEEGGGGTCCCCCCCCS---SH----HHHHHHHHHHHHHHH------SSCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhhhcCcEEEEhhhcCCCCCCCCCC---CH----HHHHHHHHHHHHHHH------CcCEEEe
Confidence 479999999876554443 33 35666643 3330 2111122 33 346888999999987 4679999
Q ss_pred ceEEee---CC-------EEecCCCCHHHH-HHHHHHcC-----CCeEEEEEEEEEEE
Q psy14704 88 DTVVSI---ND-------MMLGKPEDEEEA-KEFLSKLS-----GNTHSVFTGVAILT 129 (162)
Q Consensus 88 DTvV~~---~g-------~IlgKP~~~~eA-~~~L~~ls-----G~~h~V~Tgv~l~~ 129 (162)
||=..+ +| +..|...+.++. ...|+.|. .|+.+..+.+|+..
T Consensus 72 DSGL~vdAL~G~PGvySar~~g~~~~d~~n~~~LL~~L~~~~~~~R~A~f~c~ia~~~ 129 (203)
T 3tqu_A 72 DSGLTIAALNSAPGVFSSRYAGKNATDAERIQKVLEALEAADDSDRSASFHCVIALME 129 (203)
T ss_dssp EEEEEEGGGTTCBGGGTTTTTCTTCCHHHHHHHHHHHHHHHTCSCCEEEEEEEEEEES
T ss_pred ccEEEEhhhCCCCcceeeehhccCCCHHHHHHHHHHHhhCCCCCCCcEEEEEEEEEEE
Confidence 997765 45 345666665544 44566664 47788889999886
No 7
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A*
Probab=95.91 E-value=0.19 Score=39.70 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=68.6
Q ss_pred cEEEecCCHHHHHHHHh-CC-CCeEEecC-CCCCCC-CCC-CCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q psy14704 13 KIVLASSSPRRSQILKS-IG-LKFEVIPS-NFDESS-IPV-SKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGA 87 (162)
Q Consensus 13 ~iILAS~SprR~~lL~~-~g-~~f~v~~~-~~deE~-~~~-~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~~~vI~a 87 (162)
+|++||+-+-..+=++. ++ +.+++++. +++ -. +.. +. +. ..+|..||+++++.. +.++|+-
T Consensus 25 ~iv~AT~N~~Kl~E~~~iL~~~~iev~~~~d~~-~~ei~E~g~---Tf----~eNA~~KA~~aa~~~------g~pvlaD 90 (221)
T 1k7k_A 25 KVVLATGNVGKVRELASLLSDFGLDIVAQTDLG-VDSAEETGL---TF----IENAILKARHAAKVT------ALPAIAD 90 (221)
T ss_dssp EEEESCCCHHHHHHHHHHHGGGTEEEEETTTTT-CCCCCCCCS---SH----HHHHHHHHHHHHHHH------SSCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCeEEEEhhhcC-CCCcccCCC---CH----HHHHHHHHHHHHHHH------CCCEEee
Confidence 79999999887543332 22 24666654 344 21 111 12 33 456888999999887 4579999
Q ss_pred ceEEee---CC-------EEecCCCC-HHHHHHHHHHcCC-----CeEEEEEEEEEEECC
Q psy14704 88 DTVVSI---ND-------MMLGKPED-EEEAKEFLSKLSG-----NTHSVFTGVAILTKD 131 (162)
Q Consensus 88 DTvV~~---~g-------~IlgKP~~-~~eA~~~L~~lsG-----~~h~V~Tgv~l~~~~ 131 (162)
||=..+ +| +..|...+ .+.-...|+.|.| |+.+..+.+|+..++
T Consensus 91 DSGL~VdAL~G~PGvySar~ag~~~~d~~n~~kLL~~L~~~~~~~R~A~f~c~ial~~~~ 150 (221)
T 1k7k_A 91 DSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHA 150 (221)
T ss_dssp EEEEEEGGGTTCBGGGSTTTTCTTCCHHHHHHHHHHHTTTSCGGGCEEEEEEEEEEESST
T ss_pred ccEEEEeecCCCCcceeeeecCCCCCHHHHHHHHHHHhcCCCCCCCeEEEEEEEEEEEeC
Confidence 997765 44 24454444 4555668888888 788999999988653
No 8
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/prote initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Probab=95.85 E-value=0.26 Score=37.93 Aligned_cols=103 Identities=12% Similarity=0.173 Sum_probs=64.6
Q ss_pred cEEEecCCHHHH----HHHHhCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEec
Q psy14704 13 KIVLASSSPRRS----QILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGAD 88 (162)
Q Consensus 13 ~iILAS~SprR~----~lL~~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~~~vI~aD 88 (162)
+|++||+-+-.. +||..+| +++++.++| -.-..+. +. ..+|..||+++++.. +.++|+-|
T Consensus 2 kiv~aT~N~~K~~E~~~il~~~~--i~v~~~~~~-~~e~~g~---tf----~enA~~KA~~~~~~~------g~p~laDD 65 (186)
T 1v7r_A 2 KIFFITSNPGKVREVANFLGTFG--IEIVQLKHE-YPEIQAE---KL----EDVVDFGISWLKGKV------PEPFMIED 65 (186)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTT--CEEEEECCC-CCCCCCS---SH----HHHHHHHHHHHTTTS------CSSEEEEE
T ss_pred eEEEEcCCHHHHHHHHHHhhhcC--cEEEECCCC-CCCCCCC---CH----HHHHHHHHHHHHHHH------CCCeEecC
Confidence 699999998775 4555555 445544454 2101122 43 346888999998876 45799999
Q ss_pred eEEee---CCE--EecCCC-CHHHHHHHHHHcCC---CeEEEEEEEEEEECC
Q psy14704 89 TVVSI---NDM--MLGKPE-DEEEAKEFLSKLSG---NTHSVFTGVAILTKD 131 (162)
Q Consensus 89 TvV~~---~g~--IlgKP~-~~~eA~~~L~~lsG---~~h~V~Tgv~l~~~~ 131 (162)
|=..+ ||. |+-|-. +.......|+.|.| |+.+..+.+|+..++
T Consensus 66 SGL~vdAL~G~PGvySar~~~~~~~~~ll~~L~~~~~R~A~f~c~ia~~~~~ 117 (186)
T 1v7r_A 66 SGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDG 117 (186)
T ss_dssp EEEEEGGGTTTBGGGHHHHHHHTHHHHHHHHTTTCSCCEEEEEEEEEEEETT
T ss_pred cEEEEeecCCCCcchhHHHHhHhHHHHHHHHhcCCCCCeEEEEEEEEEEECC
Confidence 97665 442 111111 23345567777776 788999999988753
No 9
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Probab=95.45 E-value=0.26 Score=38.16 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=62.0
Q ss_pred CcEEEecCCHHHHHHHH----hCC-CCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE
Q psy14704 12 LKIVLASSSPRRSQILK----SIG-LKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIG 86 (162)
Q Consensus 12 ~~iILAS~SprR~~lL~----~~g-~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~~~vI~ 86 (162)
++|++||+-+-..+=++ .+| +++...+-+++ |.. . ++ ..+|..||+++++.. +.++|+
T Consensus 9 m~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~~~~~~-E~~---~---tf----~enA~~KA~~a~~~~------g~p~la 71 (193)
T 1b78_A 9 MKIYFATGNPNKIKEANIILKDLKDVEIEQIKISYP-EIQ---G---TL----EEVAEFGAKWVYNIL------KKPVIV 71 (193)
T ss_dssp -CEEEECSCHHHHHHHHHHTTTCTTCCEEEECCCCC-CBS---S---CH----HHHHHHHHHHHHHHH------CSCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHhcccCCeEEEECCCCCC-CCC---C---CH----HHHHHHHHHHHHHHH------CCCEEE
Confidence 47999999998755444 333 44433332333 321 2 33 456888999999887 357999
Q ss_pred eceEEee---CCE--EecCCC-CHHHHHHHHHHcCC---CeEEEEEEEEEEE
Q psy14704 87 ADTVVSI---NDM--MLGKPE-DEEEAKEFLSKLSG---NTHSVFTGVAILT 129 (162)
Q Consensus 87 aDTvV~~---~g~--IlgKP~-~~~eA~~~L~~lsG---~~h~V~Tgv~l~~ 129 (162)
-||=..+ ||. ++-|-. +.......|+.|+| |+.+..+.+|+..
T Consensus 72 DDSGL~vdAL~G~PGvySar~~~~~~~~~Ll~~L~~~~~R~A~f~c~ia~~~ 123 (193)
T 1b78_A 72 EDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCD 123 (193)
T ss_dssp EEEEEEEGGGTTCEETTHHHHHHHTHHHHHHHHHTTCSCCEEEEEEEEEEEE
T ss_pred EcCEEEEhhcCCCCcccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEEEE
Confidence 9997665 442 111111 12334456666665 7888899999887
No 10
>1zwy_A Hypothetical UPF0244 protein VC0702; hypothetical protein, structural genomics, PSI, protein STRU initiative; 1.90A {Vibrio cholerae} SCOP: c.51.4.3 PDB: 1zno_A
Probab=49.71 E-value=81 Score=23.78 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=47.1
Q ss_pred ccchhhhcCCCcEEEecCCHHHHHHHH----h-CC-CCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy14704 2 LEPYMGQLNNLKIVLASSSPRRSQILK----S-IG-LKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLK 75 (162)
Q Consensus 2 ~~~~~~~l~~~~iILAS~SprR~~lL~----~-~g-~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~ 75 (162)
|.|++...++++++.||+-|--.+=.+ + ++ .++++.+-+++ -......+ . .+-+.+=|...|....+..+
T Consensus 3 m~~~~~~~~m~~V~VgS~NPvKi~Av~~Af~~~f~~~~~~v~~v~v~-SgV~~QP~--g-~eET~~GA~nRa~~a~~~~~ 78 (185)
T 1zwy_A 3 MPPIIKRRVMRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVP-SEVADQPM--S-DEETKQGALNRVRNAKQRHP 78 (185)
T ss_dssp --------CCCEEEESCCCHHHHHHHHHHHHHHCTTCCCEEEECCCC-CSSCSSCC--S-HHHHHHHHHHHHHHHHHHST
T ss_pred chhhHHhcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCcEEEEEecCC-CCcCCCCC--C-HHHHHHHHHHHHHHHHhhCC
Confidence 567888888889999999998654443 3 33 46788877766 44433332 2 34555567888877777652
Q ss_pred cCCCCCceEEEeceEEeeCCEEe
Q psy14704 76 EDNVEPDLIIGADTVVSINDMML 98 (162)
Q Consensus 76 ~~~~~~~~vI~aDTvV~~~g~Il 98 (162)
+ ||=.|-.+|=|.
T Consensus 79 -----~-----ad~~VGiEgGv~ 91 (185)
T 1zwy_A 79 -----G-----AEYYVGLEAGIE 91 (185)
T ss_dssp -----T-----CSEEEEEEEEEE
T ss_pred -----C-----CCEEEEEcceec
Confidence 2 455565655555
No 11
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=44.39 E-value=15 Score=30.29 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.3
Q ss_pred EEEecCCHHHHHHHHhCCCCeEEec
Q psy14704 14 IVLASSSPRRSQILKSIGLKFEVIP 38 (162)
Q Consensus 14 iILAS~SprR~~lL~~~g~~f~v~~ 38 (162)
-+.|++|+||+.-|..+..+.++++
T Consensus 123 a~VGTSSlRR~aQL~~~rPdl~i~~ 147 (313)
T 1gtk_A 123 SIVGTSSLRRQCQLAERRPDLIIRS 147 (313)
T ss_dssp CEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred CEEecCCHHHHHHHHHHCCCCEEEe
Confidence 5889999999999999887777664
No 12
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=40.68 E-value=18 Score=30.43 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.4
Q ss_pred EEEecCCHHHHHHHHhCCCCeEEec
Q psy14704 14 IVLASSSPRRSQILKSIGLKFEVIP 38 (162)
Q Consensus 14 iILAS~SprR~~lL~~~g~~f~v~~ 38 (162)
-+.+++|+||+.-|+.+..+.++++
T Consensus 144 a~VGTSSlRR~aQL~~~rPdL~i~~ 168 (364)
T 3ecr_A 144 SVVGTSSLRRAAQLQRKFPHLEFRS 168 (364)
T ss_dssp CEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred CEEeCCcHHHHHHHHHHCCCCEEEE
Confidence 4789999999999999887777663
No 13
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.34 E-value=31 Score=25.65 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=33.9
Q ss_pred EeceEEeeCCEEecC-CCCHHHHHHHHHHcCCCeEEEEEEEEEEE
Q psy14704 86 GADTVVSINDMMLGK-PEDEEEAKEFLSKLSGNTHSVFTGVAILT 129 (162)
Q Consensus 86 ~aDTvV~~~g~IlgK-P~~~~eA~~~L~~lsG~~h~V~Tgv~l~~ 129 (162)
.+|.||.++|--+-| +.+.+++.+++.+++-. ..=+-|||..+
T Consensus 84 ~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~-~~kiiGvCFms 127 (157)
T 2r47_A 84 NVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEE-GGELMGLCYMD 127 (157)
T ss_dssp CEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEE-EEEEEEEEETT
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHhhcC-CCCEEEEEhHH
Confidence 799999999977766 67899999999999522 22277999864
No 14
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=38.42 E-value=44 Score=26.37 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=25.4
Q ss_pred hhcCCCcEEEecCCHHHHHHHHhCCCCeEEecC
Q psy14704 7 GQLNNLKIVLASSSPRRSQILKSIGLKFEVIPS 39 (162)
Q Consensus 7 ~~l~~~~iILAS~SprR~~lL~~~g~~f~v~~~ 39 (162)
..+.-..+|.++.|+.|.++++++|....+...
T Consensus 181 k~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 181 VALGAKSVTAIDISSEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHTTCSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred HHcCCcEEEEEechHHHHHHHHHcCCeEEEeCC
Confidence 334445688999999999999999987655443
No 15
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=36.66 E-value=71 Score=21.38 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.9
Q ss_pred eEEEeceEEeeCCEE-ecCCCCHHHHHHHHHHcCCCeE
Q psy14704 83 LIIGADTVVSINDMM-LGKPEDEEEAKEFLSKLSGNTH 119 (162)
Q Consensus 83 ~vI~aDTvV~~~g~I-lgKP~~~~eA~~~L~~lsG~~h 119 (162)
.+-..|.|+..||+- .|++ .+|+.+||+...+..-
T Consensus 46 ~L~vGD~I~~VNG~~v~g~~--h~evv~lLk~~~~g~~ 81 (95)
T 3gge_A 46 TICVGDHIESINGENIVGWR--HYDVAKKLKELKKEEL 81 (95)
T ss_dssp TCCTTCEEEEETTEECTTCC--HHHHHHHHHHSCTTCE
T ss_pred CCCCCCEEEEECCEEccCCC--HHHHHHHHHhCCCCCE
Confidence 467789999999964 5776 4889999999987643
No 16
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=36.33 E-value=20 Score=27.14 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=27.5
Q ss_pred CceEEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEE
Q psy14704 81 PDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVF 122 (162)
Q Consensus 81 ~~~vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~ 122 (162)
+.+|+|||.|. -||-+..|=.+..=| ++-+..|..-.|.
T Consensus 53 d~VivGAd~v~-~nG~v~nkiGT~~~A--l~Ak~~~vPf~V~ 91 (191)
T 1w2w_B 53 KAAFVGADRIV-RNGDTANKIGTLQLA--VICKQFGIKFFVV 91 (191)
T ss_dssp EEEEECCSEEC-TTSCEEEETTHHHHH--HHHHHHTCEEEEE
T ss_pred CEEEECccEEe-cCCCEEecccHHHHH--HHHHHcCCCEEEe
Confidence 57999999975 677789998887644 4445556555443
No 17
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=35.34 E-value=45 Score=24.79 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=23.5
Q ss_pred CCCcEEEecCCHHHHHHHHhCCCC--eEEec
Q psy14704 10 NNLKIVLASSSPRRSQILKSIGLK--FEVIP 38 (162)
Q Consensus 10 ~~~~iILAS~SprR~~lL~~~g~~--f~v~~ 38 (162)
+..++.++|+|++...+|+.+|+. |..+.
T Consensus 110 ~g~~i~i~t~~~~~~~~l~~~gl~~~fd~i~ 140 (243)
T 4g9b_A 110 QQISVGLASVSLNAPTILAALELREFFTFCA 140 (243)
T ss_dssp TTCEEEECCCCTTHHHHHHHTTCGGGCSEEC
T ss_pred ccccceecccccchhhhhhhhhhcccccccc
Confidence 367899999999999999999984 55443
No 18
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=34.51 E-value=1.7e+02 Score=23.04 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=57.5
Q ss_pred cCCCcEEE-ecCCHHHHHHHHhC---CCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHhcccC
Q psy14704 9 LNNLKIVL-ASSSPRRSQILKSI---GLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKA-------LEVSQHLKED 77 (162)
Q Consensus 9 l~~~~iIL-AS~SprR~~lL~~~---g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka-------~~v~~~~~~~ 77 (162)
+++...|| =+.|..=..+|+.+ |.+|.|+. + |+.+..+ . ...+..|+...- .++...++
T Consensus 107 I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v---~-etrP~~q---G-~~~a~~L~~~gI~vtli~dsa~~~~m~-- 176 (276)
T 1vb5_A 107 IDDGDVIITHSFSSTVLEIIRTAKERKKRFKVIL---T-ESSPDYE---G-LHLARELEFSGIEFEVITDAQMGLFCR-- 176 (276)
T ss_dssp CCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEE---E-CCTTTTH---H-HHHHHHHHHTTCCEEEECGGGHHHHHT--
T ss_pred ccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEE---e-CCCcchh---h-HHHHHHHHHCCCCEEEEcHHHHHHHHc--
Confidence 44556677 45565555666654 88999884 4 5533322 2 345555544220 00111111
Q ss_pred CCCCceEEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 78 NVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 78 ~~~~~~vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
.-+.+++|||.|. -||-+..|-.+..=|. +-...|....|.+
T Consensus 177 -~vd~vivGAd~i~-~nG~v~nkiGt~~iA~--~A~~~~vp~~V~a 218 (276)
T 1vb5_A 177 -EASIAIVGADMIT-KDGYVVNKAGTYLLAL--ACHENAIPFYVAA 218 (276)
T ss_dssp -TCSEEEECCSEEC-TTSCEEEETTHHHHHH--HHHHTTCCEEEEC
T ss_pred -cCCEEEEcccEEe-cCCCEeechhHHHHHH--HHHHcCCCEEEec
Confidence 2478999999976 5778999966665444 3444576665543
No 19
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=34.28 E-value=18 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHhCCCCeE
Q psy14704 18 SSSPRRSQILKSIGLKFE 35 (162)
Q Consensus 18 S~SprR~~lL~~~g~~f~ 35 (162)
.=|+.|.++|+.+|+.|.
T Consensus 49 ~Ls~eRi~~L~~lGf~w~ 66 (74)
T 2kta_A 49 KLPNDRRLLLDKIGFVWS 66 (74)
T ss_dssp CCCHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHcCCEec
Confidence 458999999999998764
No 20
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=32.29 E-value=34 Score=22.48 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEeceEEeeCCEEecCC
Q psy14704 22 RRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKP 101 (162)
Q Consensus 22 rR~~lL~~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~~~~~~~vI~aDTvV~~~g~IlgKP 101 (162)
+=+++|++.|++|+.+ ++| + +|... .. +.+... +... .=||+.-||.+++-|
T Consensus 19 ~aK~~L~~~gi~y~~i--di~-~---------d~~~~------~~---~~~~~~--G~~t-----VP~I~i~Dg~~l~~~ 70 (92)
T 2lqo_A 19 RLKTALTANRIAYDEV--DIE-H---------NRAAA------EF---VGSVNG--GNRT-----VPTVKFADGSTLTNP 70 (92)
T ss_dssp HHHHHHHHTTCCCEEE--ETT-T---------CHHHH------HH---HHHHSS--SSSC-----SCEEEETTSCEEESC
T ss_pred HHHHHHHhcCCceEEE--EcC-C---------CHHHH------HH---HHHHcC--CCCE-----eCEEEEeCCEEEeCC
Confidence 4578999999999877 455 2 23211 11 111111 0011 123344477888777
Q ss_pred CCHHHHHHHHHHcCCCeEE
Q psy14704 102 EDEEEAKEFLSKLSGNTHS 120 (162)
Q Consensus 102 ~~~~eA~~~L~~lsG~~h~ 120 (162)
+.++-.+.|.++.|=.|.
T Consensus 71 -~~~el~~~L~el~gL~~~ 88 (92)
T 2lqo_A 71 -SADEVKAKLVKIAGLEHH 88 (92)
T ss_dssp -CHHHHHHHHHHHHCCSCC
T ss_pred -CHHHHHHHHHHhcCCccc
Confidence 566677889998887653
No 21
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=31.84 E-value=41 Score=21.73 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=24.4
Q ss_pred eceEEeeCCEEecCCCCHHHHHHHHHHcC
Q psy14704 87 ADTVVSINDMMLGKPEDEEEAKEFLSKLS 115 (162)
Q Consensus 87 aDTvV~~~g~IlgKP~~~~eA~~~L~~ls 115 (162)
.|-|.++-|-.+.| .|++||.+.|..|.
T Consensus 39 GD~VLVH~GfAi~~-ideeeA~etl~~l~ 66 (75)
T 2z1c_A 39 GDWVIVHTGFAIEK-LDEKKAMEILEAWA 66 (75)
T ss_dssp TCEEEEETTEEEEE-ECHHHHHHHHHHHH
T ss_pred CCEEEEecchhhhh-CCHHHHHHHHHHHH
Confidence 68888999999999 79999999988764
No 22
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=31.72 E-value=34 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=22.3
Q ss_pred cEEEecCCHHH-----HHHHHhCCCCeEEecCC
Q psy14704 13 KIVLASSSPRR-----SQILKSIGLKFEVIPSN 40 (162)
Q Consensus 13 ~iILAS~SprR-----~~lL~~~g~~f~v~~~~ 40 (162)
-||.||.|-+- .++|+.+|++|++....
T Consensus 26 ~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~S 58 (181)
T 4b4k_A 26 GVIMGSTSDWETMKYACDILDELNIPYEKKVVS 58 (181)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEc
Confidence 38999999765 47899999999866444
No 23
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=28.36 E-value=49 Score=21.87 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=11.7
Q ss_pred CcEEEecCCHHHHHHHHhCCCC
Q psy14704 12 LKIVLASSSPRRSQILKSIGLK 33 (162)
Q Consensus 12 ~~iILAS~SprR~~lL~~~g~~ 33 (162)
.++|.-+.++...+.|+++|++
T Consensus 96 ~~ii~~~~~~~~~~~l~~~g~~ 117 (140)
T 1lss_A 96 NKTIARISEIEYKDVFERLGVD 117 (140)
T ss_dssp CCEEEECSSTTHHHHHHHTTCS
T ss_pred CEEEEEecCHhHHHHHHHcCCC
Confidence 3455555555555555555544
No 24
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=27.91 E-value=63 Score=19.67 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=18.9
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 99 GKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 99 gKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
=||-+.+||..+|..+ |+.-.||.
T Consensus 10 ~kpmsveEAv~qmel~-gh~F~vF~ 33 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL-GHSFYVYT 33 (57)
T ss_dssp -CCBCHHHHHHHHHHH-TCSEEEEE
T ss_pred CCCCCHHHHHHHHHhC-CCcEEEEE
Confidence 4899999999988765 77667765
No 25
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=26.51 E-value=46 Score=23.31 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=20.5
Q ss_pred cEEEecCCHHH---------HHHHHhCCCCeEEe
Q psy14704 13 KIVLASSSPRR---------SQILKSIGLKFEVI 37 (162)
Q Consensus 13 ~iILAS~SprR---------~~lL~~~g~~f~v~ 37 (162)
.|...|.+|.+ +.||+..|++|+.+
T Consensus 3 ~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEi 36 (121)
T 1u6t_A 3 RVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEK 36 (121)
T ss_dssp EEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEecCCCCCccchHHHHHHHHHHHHCCCceEEE
Confidence 45667888887 68999999999877
No 26
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=26.02 E-value=1e+02 Score=20.73 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.1
Q ss_pred EEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCe
Q psy14704 84 IIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNT 118 (162)
Q Consensus 84 vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~ 118 (162)
+-..|.|+..||+-+..-.+.+++.++|+. .|..
T Consensus 73 L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~ 106 (128)
T 2db5_A 73 LKENDQILAINHTPLDQNISHQQAIALLQQ-TTGS 106 (128)
T ss_dssp CCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSE
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCe
Confidence 345678888888766445689999999988 6654
No 27
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=24.53 E-value=39 Score=27.52 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHhCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHH
Q psy14704 18 SSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSEL 62 (162)
Q Consensus 18 S~SprR~~lL~~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~l 62 (162)
++-..|.++|+.+|++..++- +|+ +.+ ... +|++++..+
T Consensus 79 t~~~eK~~ll~~lGVD~v~~~-~F~-~~~-a~l---s~e~Fv~~l 117 (308)
T 3op1_A 79 LNPAERERKLKREGVEELYLL-DFS-SQF-ASL---TAQEFFATY 117 (308)
T ss_dssp SCHHHHHHHHHHHTCCEEEEE-CCC-HHH-HTC---CHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEe-cCC-HHH-HcC---CHHHHHHHH
Confidence 445778999999999876543 477 543 334 799998865
No 28
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=23.31 E-value=56 Score=27.46 Aligned_cols=81 Identities=17% Similarity=0.054 Sum_probs=48.5
Q ss_pred hCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhcccCCCCCceEEEeceEEeeCCEEe
Q psy14704 29 SIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKK----------ALEVSQHLKEDNVEPDLIIGADTVVSINDMML 98 (162)
Q Consensus 29 ~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~~~~~~vI~aDTvV~~~g~Il 98 (162)
+-|.+|.|+ ++ |+.+..+ .-...+..|++.+ +-.+.++ +.-+.+|+|||.|+ -||-+.
T Consensus 207 ~~gk~~~V~---v~-EtRP~~q---GarltA~eL~~~GIpvtlI~Dsa~~~~M~~----~~Vd~ViVGAD~V~-aNG~v~ 274 (383)
T 2a0u_A 207 YDGKLERVY---AC-ETRPWNQ---GARLTVYECVQEDIPCTLICDGAASSLMLN----RKIDAVVVGADRIC-QNGDTA 274 (383)
T ss_dssp HTTCEEEEE---EE-CCTTTTH---HHHTHHHHHHHTTCCEEEECGGGHHHHHHH----SCCCEEEECCSEEC-TTCCEE
T ss_pred HcCCeEEEE---Ee-CCCCccc---hHHHHHHHHHHcCCCEEEEehhHHHHHhhc----CCCCEEEECccEEe-cCCCEe
Confidence 568899988 45 6644322 1122445555443 2222332 11378999999975 677788
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 99 GKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 99 gKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
.|=.+..= .++-+..|..-.|..
T Consensus 275 NKiGTy~l--Al~Ak~~~vPfyV~a 297 (383)
T 2a0u_A 275 NKIGTYNL--AVSAKFHGVKLYVAA 297 (383)
T ss_dssp EETTHHHH--HHHHHHTTCCEEEEC
T ss_pred ecccHHHH--HHHHHHcCCCEEEeC
Confidence 99887764 456666676655543
No 29
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=22.53 E-value=60 Score=27.19 Aligned_cols=81 Identities=17% Similarity=0.073 Sum_probs=47.7
Q ss_pred hCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhcccCCCCCceEEEeceEEeeCCEEe
Q psy14704 29 SIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKK----------ALEVSQHLKEDNVEPDLIIGADTVVSINDMML 98 (162)
Q Consensus 29 ~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~~~~~~vI~aDTvV~~~g~Il 98 (162)
+-|.+|.|+ ++ |+.+..+ .-...+..|++.. +-.+.++ +.-+.+|+|||.|+ -||-+.
T Consensus 203 ~~gk~~~V~---v~-EtRP~~q---G~rltA~eL~~~GIpvtlI~Dsa~~~~M~~----~~Vd~ViVGAD~V~-aNG~v~ 270 (374)
T 2yvk_A 203 QKDLGLHIY---AC-ETRPVLQ---GSRLTAWELMQGGIDVTLITDSMAAHTMKE----KQISAVIVGADRIA-KNGDTA 270 (374)
T ss_dssp HTTCCCEEE---EE-CCTTTTH---HHHTHHHHHHTTTCEEEEECGGGHHHHHHH----TTCCEEEECCSEEE-TTCCEE
T ss_pred HcCCEEEEE---Ee-CCCCccc---cHHHHHHHHHHcCCCEEEEehhHHHHHhhh----cCCCEEEECccEEe-cCCCEE
Confidence 568889888 45 6544322 1112344444333 2222222 11378999999976 677788
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 99 GKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 99 gKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
.|=.+..= .++-+..|..-.|.+
T Consensus 271 NKiGTy~l--Al~Ak~~~vPfyV~a 293 (374)
T 2yvk_A 271 NKIGTYGL--AILANAFDIPFFVAA 293 (374)
T ss_dssp EETTHHHH--HHHHHHTTCCEEEEC
T ss_pred ecccHHHH--HHHHHHcCCCEEEec
Confidence 99887764 456666677666644
No 30
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=22.39 E-value=60 Score=26.88 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=47.1
Q ss_pred hCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhcccCCCCCceEEEeceEEeeCCEEe
Q psy14704 29 SIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKK----------ALEVSQHLKEDNVEPDLIIGADTVVSINDMML 98 (162)
Q Consensus 29 ~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~~~~~~vI~aDTvV~~~g~Il 98 (162)
+.|.+|.|+ ++ |+.+..+ .-...+..|++.. +-.+.++ ..-+.+|+|||.|+ -|| +.
T Consensus 176 ~~gk~~~V~---v~-EtRP~~q---G~rlta~eL~~~GI~vtlI~Dsa~~~~M~~----~~Vd~VivGAd~V~-aNG-v~ 242 (351)
T 1t5o_A 176 EQGKEIRVI---AC-ETRPLNQ---GSRLTCWELMEDGIDVTLITDSMVGIVMQK----GMVDKVIVGADRIV-RDA-VF 242 (351)
T ss_dssp HTTCCCEEE---EE-CCTTTTH---HHHTHHHHHHHTTCCEEEECGGGHHHHHHT----TCCSEEEECCSEEE-TTE-EE
T ss_pred HCCCEEEEE---Ee-CCCcccc---cHHHHHHHHHhCCCCEEEEehhHHHHHhhc----CCCCEEEECccchh-hcC-cc
Confidence 568899988 45 6644322 1112344444433 1122222 11368999999976 567 99
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 99 GKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 99 gKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
.|=.+..= .++-+..|..-.|.+
T Consensus 243 NKiGT~~l--Al~Ak~~~vPfyV~a 265 (351)
T 1t5o_A 243 NKIGTYTV--SVVAKHHNIPFYVAA 265 (351)
T ss_dssp EETTHHHH--HHHHHHTTCCEEEEC
T ss_pred cccCHHHH--HHHHHHcCCCEEEeC
Confidence 99998864 455666676665543
No 31
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=21.79 E-value=64 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCceEEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 80 EPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 80 ~~~~vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
-+.+|+|||.|. -||-+..|=.+..= .++-+..|..-.|.+
T Consensus 228 Vd~VivGAd~V~-aNG~v~NKiGT~~l--Al~Ak~~~vPfyV~a 268 (347)
T 1t9k_A 228 IDAVVVGADRIA-LNGDTANKIGTYSL--AVLAKRNNIPFYVAA 268 (347)
T ss_dssp CSEEEECCSEEE-TTSCEEEETTHHHH--HHHHHHTTCCEEEEC
T ss_pred CCEEEECccEEe-cCCCEEecccHHHH--HHHHHHcCCCEEEec
Confidence 368999999976 67778889887753 456666677666654
No 32
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=21.77 E-value=3.2e+02 Score=22.08 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=57.7
Q ss_pred cCCCcEEEe-cCCHHHHHHHHh---CCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhc
Q psy14704 9 LNNLKIVLA-SSSPRRSQILKS---IGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKK----------ALEVSQHL 74 (162)
Q Consensus 9 l~~~~iILA-S~SprR~~lL~~---~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~K----------a~~v~~~~ 74 (162)
+.+...||- +.|..=..+|.. .|.+|.|+ ++ |+.+..+ -..++..|+... +-.+.++
T Consensus 119 I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~---v~-EsrP~~q----G~~la~~L~~~gI~vtli~Dsa~~~~m~~- 189 (315)
T 3ecs_A 119 IKDGATILTHAYSRVVLRVLEAAVAAKKRFSVY---VT-ESQPDLS----GKKMAKALCHLNVPVTVVLDAAVGYIMEK- 189 (315)
T ss_dssp CCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEE---EE-CCTTTTH----HHHHHHHHHTTTCCEEEECGGGHHHHGGG-
T ss_pred cCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEE---Ee-cCCCcch----HHHHHHHHHHcCCCEEEEehhHHHHHHHh-
Confidence 344444443 556555555553 58899988 45 6543322 234444444322 1112222
Q ss_pred ccCCCCCceEEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 75 KEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 75 ~~~~~~~~~vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
-+.+|+|||.|. -||-+..|=.+..=| ++-+..|..-.|.+
T Consensus 190 -----vd~VivGAd~i~-~nG~v~nkiGT~~iA--l~Ak~~~vP~~V~a 230 (315)
T 3ecs_A 190 -----ADLVIVGAEGVV-ENGGIINKIGTNQMA--VCAKAQNKPFYVVA 230 (315)
T ss_dssp -----CSEEEEECSEEC-TTSCEEEETTHHHHH--HHHHHTTCCEEEEC
T ss_pred -----CCEEEECceEEe-cCCCeeehhhhHHHH--HHHHHhCCCEEEEe
Confidence 368999999976 688899999987544 46666677766654
No 33
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=21.58 E-value=57 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=17.9
Q ss_pred CCEEecCCCCHHHHHHHHHHcCCC
Q psy14704 94 NDMMLGKPEDEEEAKEFLSKLSGN 117 (162)
Q Consensus 94 ~g~IlgKP~~~~eA~~~L~~lsG~ 117 (162)
+|+|+.+..+.++-.++|+.++|+
T Consensus 119 ~G~i~~~~~~~~~l~~~l~~~~~k 142 (142)
T 3ewl_A 119 RKRVILKDTSMEQLIDYLATQAGK 142 (142)
T ss_dssp TCBEEECSCCHHHHHHHHHC----
T ss_pred CCCEEecCCCHHHHHHHHHHHccC
Confidence 688888889999999999988764
No 34
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=20.95 E-value=1.3e+02 Score=19.59 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=22.5
Q ss_pred EEeceEEeeCCEEecCCCCHHHHHHHHHHcCCC
Q psy14704 85 IGADTVVSINDMMLGKPEDEEEAKEFLSKLSGN 117 (162)
Q Consensus 85 I~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~ 117 (162)
-..|.|+..||+-+.- .+.+++.++|+...+.
T Consensus 64 ~~GD~Il~Vng~~v~~-~~~~~~~~~l~~~~~~ 95 (108)
T 2d92_A 64 LPGDRLVSVNEYCLDN-TSLAEAVEILKAVPPG 95 (108)
T ss_dssp CTTCEEEEESSCBCTT-CCHHHHHHHHHHSCSE
T ss_pred CCCCEEEEECCEECCC-CCHHHHHHHHHhCCCC
Confidence 4457777777764432 4689999999987654
No 35
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=20.68 E-value=1.6e+02 Score=18.62 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=22.7
Q ss_pred EeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeE
Q psy14704 86 GADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTH 119 (162)
Q Consensus 86 ~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h 119 (162)
..|.|+..||+-+.-.. .+++..+|+...|...
T Consensus 65 ~GD~I~~ing~~v~~~~-~~~~~~~l~~~~g~~v 97 (104)
T 3sfj_A 65 IGDKIMQVNGWDMTMVT-HDQARKRLTKRSEEVV 97 (104)
T ss_dssp TTCEEEEETTEECTTCC-HHHHHHHHTCTTCSEE
T ss_pred CCCEEEEECCEECCCCC-HHHHHHHHHhCCCCEE
Confidence 35777788887665433 7888888877556653
No 36
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=20.50 E-value=1.1e+02 Score=19.26 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 99 GKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 99 gKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
=||-+.+||..+|..+ |..-.||.
T Consensus 10 ~kpMsveEAv~qmel~-gh~F~vF~ 33 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL-GHNFFVFQ 33 (65)
T ss_dssp CSCBCHHHHHHHHHHH-TCSEEEEE
T ss_pred CCCCCHHHHHHHHHhC-CCcEEEEE
Confidence 3899999999988765 77777776
No 37
>3ik5_A Protein NEF; protein-protein complex, cell membrane, lipoprotein, membran myristate; 2.05A {Simian immunodeficiency virus} SCOP: d.102.1.0 PDB: 3ioz_A
Probab=20.43 E-value=66 Score=23.44 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=16.3
Q ss_pred CCHHHHHHHHhC--------------------------CCCeEEecCCCC
Q psy14704 19 SSPRRSQILKSI--------------------------GLKFEVIPSNFD 42 (162)
Q Consensus 19 ~SprR~~lL~~~--------------------------g~~f~v~~~~~d 42 (162)
-|++|++||.-. |+-|+.+|.+.+
T Consensus 42 yS~kR~~ILdl~~y~~qG~~pdWqnYT~GPG~RyPltFGWcfkLvPV~~~ 91 (143)
T 3ik5_A 42 YSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVS 91 (143)
T ss_dssp CCHHHHHHHHHHHHHTTCBCSCCCCBCCCSSSBCBSSTTCCEEEEEC---
T ss_pred eccchhhcceeEEEeeccccCCcceeCCCCCccccccCceeEEEeECCcC
Confidence 389999999632 667888888887
No 38
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=20.29 E-value=35 Score=28.09 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCcEEEe-cCCHHHHHHHH---hCCCCeEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhcccCC
Q psy14704 10 NNLKIVLA-SSSPRRSQILK---SIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKAL-------EVSQHLKEDN 78 (162)
Q Consensus 10 ~~~~iILA-S~SprR~~lL~---~~g~~f~v~~~~~deE~~~~~~~~~~p~~~v~~lA~~Ka~-------~v~~~~~~~~ 78 (162)
.+...||= +.|..=..+|. +.|.+|.|+ ++ |+.+..+ . ...+..|++.+-. ++...+ .
T Consensus 140 ~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~---v~-EtRP~~q---G-rltA~eL~~~GI~vtlI~Dsa~~~~M---~ 208 (338)
T 3a11_A 140 EDGDVIMTHCHSKAAISVMKTAWEQGKDIKVI---VT-ETRPKWQ---G-KITAKELASYGIPVIYVVDSAARHYM---K 208 (338)
T ss_dssp CTTCEEEECSCCHHHHHHHHHHHHTTCCCEEE---EE-CCTTTTH---H-HHHHHHHHHTTCCEEEECGGGTTTTG---G
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEE---Ee-CCCCchh---h-HHHHHHHHhCCCCEEEEehHHHHHHH---H
Confidence 34444553 44533333443 358889988 45 6644332 2 3344444432200 000001 1
Q ss_pred CCCceEEEeceEEeeCCEEecCCCCHHHHHHHHHHcCCCeEEEEE
Q psy14704 79 VEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFT 123 (162)
Q Consensus 79 ~~~~~vI~aDTvV~~~g~IlgKP~~~~eA~~~L~~lsG~~h~V~T 123 (162)
.-+.+|+|||.|+ -||-+..|=.+..= .++-+..|..-.|.+
T Consensus 209 ~Vd~VivGAd~V~-anG~v~NKiGT~~l--Al~Ak~~~vPfyV~a 250 (338)
T 3a11_A 209 MTDKVVMGADSIT-VNGAVINKIGTALI--ALTAKEHRVWTMIAA 250 (338)
T ss_dssp GCSEEEECCSEEC-TTSCEEEETTHHHH--HHHHHHTTCEEEEEC
T ss_pred hCCEEEECccEEe-cCCCEeecccHHHH--HHHHHHcCCCEEEec
Confidence 1368999999975 67788999888764 456666676666544
Done!