RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14704
(162 letters)
>gnl|CDD|238310 cd00555, Maf, Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide- or
nucleic acid-binding protein with structural similarity
to the hypoxanthine/xanthine NTP pyrophosphatase Ham1
from Methanococcus jannaschii, RNase H from Escherichia
coli, and some other nucleotide or RNA-binding proteins.
Length = 180
Score = 179 bits (456), Expect = 2e-58
Identities = 66/150 (44%), Positives = 92/150 (61%), Gaps = 9/150 (6%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQH 73
++LAS+SPRR ++L+ +G+ FEV+PS+ DE+ I +YV LA KA V+
Sbjct: 1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKGESP----EDYVLRLAEAKAEAVAAR 56
Query: 74 LKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAIL-TKDK 132
L D L+IGADTVV ++ +LGKP+D EEA+E L +LSG TH V+TGVA++ K
Sbjct: 57 LPPD----ALVIGADTVVVLDGRILGKPKDREEAREMLKRLSGRTHEVYTGVALIDPGGK 112
Query: 133 DSRFYNQTQVTFANLTPAVISAYVKTREPL 162
T+V F L+ I AYV + EPL
Sbjct: 113 LVTDVESTKVRFRELSDEEIEAYVASGEPL 142
>gnl|CDD|223501 COG0424, Maf, Nucleotide-binding protein implicated in inhibition
of septum formation [Cell division and chromosome
partitioning].
Length = 193
Score = 168 bits (429), Expect = 5e-54
Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 9/153 (5%)
Query: 11 NLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEV 70
+++LASSSPRR ++L+ +G+ FEVIPS+ DE + EYV LA +KA V
Sbjct: 2 MPRLILASSSPRRRELLEQLGIPFEVIPSDIDEPLLK----AEEPREYVLRLAEEKARAV 57
Query: 71 SQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
+ L D L+IGADTVV ++ +LGKP+DEEEA+E L KLSG TH V+TGVA++
Sbjct: 58 AARLPPD----ALVIGADTVVVLDGRILGKPKDEEEAREMLRKLSGRTHQVYTGVALIDP 113
Query: 131 DKDS-RFYNQTQVTFANLTPAVISAYVKTREPL 162
K T+V F L+ I AYV + EPL
Sbjct: 114 GKRVQSEVEVTKVRFRTLSDEEIEAYVASGEPL 146
>gnl|CDD|234807 PRK00648, PRK00648, Maf-like protein; Reviewed.
Length = 191
Score = 166 bits (422), Expect = 6e-53
Identities = 71/152 (46%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 11 NLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEV 70
KI+LASSSPRR +IL+ + FEV+PS F E S P S E ELA KA V
Sbjct: 2 KYKIILASSSPRRKEILEGFRIPFEVVPSPFVEESYPYSLDPE---EITLELARLKAEAV 58
Query: 71 SQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
L D +LII ADT+V + +LGKP+DEEEA E L LSG TH V TGV +L
Sbjct: 59 RSDLFPD----ELIITADTIVWYDGKVLGKPKDEEEAVEMLRTLSGKTHEVITGVCLLHN 114
Query: 131 DKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
K TQVTF L+ I Y+ T +PL
Sbjct: 115 GKLLSGSETTQVTFRELSDEEIEYYIDTYKPL 146
>gnl|CDD|178901 PRK00148, PRK00148, Maf-like protein; Reviewed.
Length = 194
Score = 158 bits (402), Expect = 5e-50
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 11/152 (7%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQ 72
++VLAS+SP R ++L+ G+ V+ S+ DE +I S+ E V LA KA V++
Sbjct: 2 RLVLASASPARLKLLRLAGIPPLVVVSHVDEDAIA----ASSPSELVQALARAKAEAVAE 57
Query: 73 HLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK 132
+ +++G D+++ I+ +LGKP EEA E ++SG T ++TG A++ D+
Sbjct: 58 N-----APDAVVLGCDSMLLIDGRLLGKPHTPEEAIERWQQMSGRTGELYTGHALIDLDQ 112
Query: 133 DSR--FYNQTQVTFANLTPAVISAYVKTREPL 162
FY +T+V FA L+ I AYV T EPL
Sbjct: 113 GKTVTFYERTEVHFAELSDEEIEAYVATGEPL 144
>gnl|CDD|202278 pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of
septum formation in eukaryotes, bacteria, and archaea.
Length = 193
Score = 154 bits (392), Expect = 2e-48
Identities = 73/151 (48%), Positives = 103/151 (68%), Gaps = 6/151 (3%)
Query: 12 LKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVS 71
+ ++LAS+SPRR ++L+ +G+ FEVI S FDE S+ S + EYV +LA +KAL
Sbjct: 1 MPLILASTSPRRKELLEDLGIPFEVIVSYFDEESVLYS---LDPREYVVDLACEKALAKV 57
Query: 72 QHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKD 131
L DN LIIGADTVV + +LGKP+D+EEA+E L KLSGN HSV+TG+A+++ +
Sbjct: 58 AQLAPDNA---LIIGADTVVILGGRILGKPKDKEEAREMLRKLSGNVHSVYTGLALISPE 114
Query: 132 KDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
K+ F T+V F +L+ I AYV++ EPL
Sbjct: 115 KNLLFLEVTKVKFRDLSDEEIEAYVESGEPL 145
>gnl|CDD|234618 PRK00078, PRK00078, Maf-like protein; Reviewed.
Length = 192
Score = 151 bits (383), Expect = 3e-47
Identities = 71/153 (46%), Positives = 98/153 (64%), Gaps = 8/153 (5%)
Query: 12 LKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVS 71
+KI+LAS+S RR ++LK I F+VI S+FDESS+P FK N YV LA KA VS
Sbjct: 1 MKIILASASERRQELLKRILEDFQVIVSDFDESSVP---FKGNIESYVMNLAEGKARSVS 57
Query: 72 QHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAIL--T 129
+ L + E ++IG DT+V+ N +LGKP+DEE+A E L LSGN H V++G+AIL
Sbjct: 58 KKLDQ---ESSIVIGCDTIVAFNGKVLGKPKDEEDAFEMLKALSGNEHEVYSGIAILDTK 114
Query: 130 KDKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+K + + T+V F+ LT I Y+ T EP+
Sbjct: 115 SNKIIKDFVCTEVKFSKLTDRQIRKYINTGEPM 147
>gnl|CDD|129276 TIGR00172, maf, MAF protein. This nonessential gene causes
inhibition of septation when overexpressed. A member of
the family is found in the Archaeon Pyrococcus
horikoshii and another in the round worm Caenorhabditis
elegans [Cellular processes, Cell division].
Length = 183
Score = 127 bits (322), Expect = 5e-38
Identities = 66/149 (44%), Positives = 91/149 (61%), Gaps = 9/149 (6%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQH 73
++LAS SPRR ++L+ +G+ FE I S FDE S+ ++ E V LA +KA V++
Sbjct: 5 LILASQSPRRKELLEELGISFEQIVSEFDEKSLK----TTSPRELVYRLAKEKAQAVAEL 60
Query: 74 LKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDKD 133
L D LIIGADTVV ++ + GKP+D+EEA EFL KLSG H V+T VA++
Sbjct: 61 LA-DA----LIIGADTVVILDGEIYGKPKDKEEAAEFLRKLSGQEHEVYTAVALIDSVHL 115
Query: 134 SRFYNQTQVTFANLTPAVISAYVKTREPL 162
F + T+V F L P I YV++ EPL
Sbjct: 116 LTFLDVTKVHFRALDPEEIEKYVESGEPL 144
>gnl|CDD|238485 cd00985, Maf_Ham1, Maf_Ham1. Maf, a nucleotide binding protein, has
been implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea. A Ham1-related protein
from Methanococcus jannaschii is a novel NTPase that has
been shown to hydrolyze nonstandard nucleotides, such as
hypoxanthine/xanthine NTP, but not standard nucleotides.
Length = 131
Score = 121 bits (307), Expect = 2e-36
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 14 IVLASSSPRRSQILKSIG-LKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQ 72
++LAS SPRR + LK IG ++FEV+PS+ DE+ + K + V ELA KA V++
Sbjct: 1 LILASGSPRRLEELKQIGGIEFEVLPSDIDETGL-----KGEPEDTVEELALLKARAVAE 55
Query: 73 HLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK 132
L +I DT + ++ GKP EA E L LSG T T VA++ D
Sbjct: 56 RLP-----DAPVIADDTGLVVDGRPGGKPARFAEALEMLRGLSGRTAEFVTAVALVDPDG 110
Query: 133 DSR-FYNQTQVTFA 145
F +T+ A
Sbjct: 111 KIITFEGETEGKIA 124
>gnl|CDD|184647 PRK14363, PRK14363, Maf-like protein; Provisional.
Length = 204
Score = 121 bits (305), Expect = 2e-35
Identities = 62/151 (41%), Positives = 93/151 (61%), Gaps = 9/151 (5%)
Query: 12 LKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVS 71
++I+LASSSPRR Q+++ +G++FEV + +E +F + E V EL+ +KA V
Sbjct: 1 MRIILASSSPRRRQLMELLGIEFEVEKPDVEE------EFLESPEETVRELSLRKAEWVF 54
Query: 72 QHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKD 131
+ KE+ + L+IG+DTVV ++ +LGKPE EEAK L KLSG H V+TGVA ++ +
Sbjct: 55 KKRKEEEI---LVIGSDTVVVLDGNILGKPESLEEAKGMLKKLSGRWHVVYTGVAFVSSE 111
Query: 132 KDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+ T+V F L +VI YV+ PL
Sbjct: 112 TKDVIVSSTKVRFRELPESVIDYYVEKYRPL 142
>gnl|CDD|234584 PRK00032, PRK00032, Maf-like protein; Reviewed.
Length = 190
Score = 117 bits (295), Expect = 8e-34
Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 20/156 (12%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGE----YVSELAYKKAL 68
+ LAS SPRR ++L +G+ FEV+ +E P GE YV LA KA
Sbjct: 3 SLYLASGSPRRRELLTQLGVPFEVLVPGIEEQRQP--------GESAQQYVERLARDKAQ 54
Query: 69 E-VSQHLKEDNVEPDL-IIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVA 126
V+ DL ++GADT+V ++ +L KP D +A L LSG TH V T VA
Sbjct: 55 AGVAL------APQDLPVLGADTIVVLDGEVLEKPRDAADAAAMLRALSGRTHQVMTAVA 108
Query: 127 ILTKDKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+ + T VTF L+ I+ Y + EPL
Sbjct: 109 LADSQRILSCLVVTDVTFRTLSDEEIARYWASGEPL 144
>gnl|CDD|237693 PRK14368, PRK14368, Maf-like protein; Provisional.
Length = 193
Score = 111 bits (280), Expect = 1e-31
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 19/158 (12%)
Query: 11 NLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGE----YVSELAYKK 66
N IVLAS+SPRRS++L S G++F+V+P++ E +P GE +V LA +K
Sbjct: 4 NSPIVLASASPRRSELLASAGIEFDVVPADIPEEPLP--------GEEPVDHVLRLAREK 55
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVA 126
A + E IGADT+V + ++GKP+DE +A L KLSG H V TG A
Sbjct: 56 ARAAAAL-----AEGRFFIGADTIVVCDGEIMGKPKDEADAVRMLKKLSGVPHEVITGFA 110
Query: 127 ILTKDKDSRFYN--QTQVTFANLTPAVISAYVKTREPL 162
+ +++D +T+V F L I Y+ T P+
Sbjct: 111 VYDRERDGCVTKAVRTKVFFKPLRDEEIRDYIATGCPM 148
>gnl|CDD|172837 PRK14361, PRK14361, Maf-like protein; Provisional.
Length = 187
Score = 103 bits (258), Expect = 2e-28
Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 12/150 (8%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQH 73
++LAS SPRR ++L+++G+ F+V+ S E S +++ +ELA KA V++
Sbjct: 1 VILASGSPRRRELLENLGVPFQVVVSGEAEDST-----ETDPARLAAELALLKARAVAR- 54
Query: 74 LKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK 132
+ PD ++I ADTVV++ ++L KP DE E + FL LSG TH V+TGVA+L++
Sbjct: 55 -----LHPDAVVIAADTVVALGGVLLAKPADEAENEAFLRVLSGRTHQVYTGVAVLSRGT 109
Query: 133 DSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+ +T VTF LT A IS Y ++ E L
Sbjct: 110 EQVGVERTDVTFRALTAAEISFYARSGEGL 139
>gnl|CDD|172838 PRK14362, PRK14362, Maf-like protein; Provisional.
Length = 207
Score = 100 bits (251), Expect = 4e-27
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 19/156 (12%)
Query: 12 LKIVLASSSPRRSQILKSIGLKFEVI-PSNFDESSIPVSKFKSNYGE----YVSELAYKK 66
+VLAS SPRR + L+ +GL FEVI P + S I GE Y A K
Sbjct: 12 CPVVLASGSPRRREFLEQMGLPFEVILPGAAEPSPIE--------GEQPEAYARRAAEAK 63
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVA 126
A V+ L+I ADTVV+++ M+LGKP D +A L +L+G TH V +
Sbjct: 64 ARAVAADHAGR-----LVIAADTVVALDGMILGKPADRADALSMLRRLAGRTHEVVSACC 118
Query: 127 ILTKDKDSR-FYNQTQVTFANLTPAVISAYVKTREP 161
++ D F+ T+VT + A ++AYV T EP
Sbjct: 119 VVLPDGGREVFHAITRVTMWDWPEAALAAYVATGEP 154
>gnl|CDD|237690 PRK14365, PRK14365, Maf-like protein; Provisional.
Length = 197
Score = 100 bits (250), Expect = 4e-27
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 12/153 (7%)
Query: 13 KIVLASSSPRRSQILKS-IGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVS 71
+I+LAS+SPRR ++LK IG F V PS+++E P + E + + + +KA +V+
Sbjct: 3 RIILASASPRRKELLKQLIGDNFLVYPSSYEEPPQP----GLDPEELLLKHSLEKARDVA 58
Query: 72 QHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKD 131
+H +II ADT V N +LGKP E A+E L KLSG V TG+ +L D
Sbjct: 59 KHFDSG-----IIISADTSVFCNGEVLGKPASPENAEEMLEKLSGRKFLVITGLTVLDLD 113
Query: 132 --KDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
K+ T V L+ I AYV+T EPL
Sbjct: 114 SGKEISEIESTDVWMTELSREQILAYVRTGEPL 146
>gnl|CDD|184648 PRK14364, PRK14364, Maf-like protein; Provisional.
Length = 181
Score = 92.8 bits (230), Expect = 3e-24
Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 19/152 (12%)
Query: 16 LASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGE----YVSELAYKKALEVS 71
LASSSPRR ++L+ +GL FE+ + DES + GE YV LA +KA V
Sbjct: 1 LASSSPRRRELLQQLGLNFEIYSPDIDESV--------HEGELVHQYVERLAREKAQAVL 52
Query: 72 QHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
N+ PD +II ADT + ++ ++GKP+ ++ A + +LSG H VF+G+ I T+
Sbjct: 53 ------NIFPDSVIIAADTSLGLDGQIIGKPDSKQHAFDIWKQLSGRWHDVFSGICIATQ 106
Query: 131 DKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
+ QTQV FA+LT + Y T EP+
Sbjct: 107 QQILSQVVQTQVEFASLTTQDMEDYWATGEPV 138
>gnl|CDD|179341 PRK01839, PRK01839, Maf-like protein; Reviewed.
Length = 209
Score = 91.7 bits (228), Expect = 1e-23
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 28/163 (17%)
Query: 16 LASSSPRRSQILKSIGLKFEVIPSNFDESS------IPVSKFKSNYGE----YVSELAYK 65
LAS SPRR ++L+ +G++FE++ DE + +P GE YV +
Sbjct: 14 LASQSPRRQELLQQLGVRFELLLPRPDEDAEALEAELP--------GEAPDDYVQRVCVA 65
Query: 66 KALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGV 125
KA L + ++ ADT V+I+ +LGKP D +A L++L+G TH V T V
Sbjct: 66 KAEAARARLVARGLPAAPVLVADTTVTIDGAILGKPADAADALAMLTRLAGRTHRVLTAV 125
Query: 126 AILTKDKD------SRFYNQTQVTFANLTPAVISAYVKTREPL 162
A++ D + SR ++V FA T I+ YV + EP
Sbjct: 126 AVIDADGELMPPALSR----SRVRFAPATRDAIARYVASGEPF 164
>gnl|CDD|179732 PRK04056, PRK04056, Maf-like protein; Reviewed.
Length = 180
Score = 89.3 bits (222), Expect = 5e-23
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQH 73
I+LASSS R+ +LK G++FE +FDE SI K++ E+V Y +
Sbjct: 2 IILASSSSTRANLLKEAGIEFEQKSLDFDEESIK----KTSPKEFV----YLAVKGKLEQ 53
Query: 74 LKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK 132
+ ++ AD+VVS + +L K +D+EEA+E L SGN SV T + + + +K
Sbjct: 54 FLKKYGNECNLLVADSVVSCGNKILRKAKDKEEAREMLKLQSGNEISVLTCMILKSPEK 112
>gnl|CDD|234957 PRK01526, PRK01526, Maf-like protein; Reviewed.
Length = 205
Score = 87.2 bits (216), Expect = 5e-22
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 13/155 (8%)
Query: 11 NLKIVLASSSPRRSQILKSIGL-KFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALE 69
NL I+LASSSP R ++L I + ++IP++ DE+ + LAY+KA++
Sbjct: 7 NLPIILASSSPARIELLNRIKIIPSQIIPADIDETPNL----RELPAPLAIRLAYEKAIK 62
Query: 70 VSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILT 129
++ ++E + II ADTV ++ +L K EE K + LSG H V+TG+ I+
Sbjct: 63 IASQIEESAI----IIAADTVAAVGRRILPKATTYEEVKNCIKMLSGRRHRVYTGLCIIK 118
Query: 130 KDKDSRFYN----QTQVTFANLTPAVISAYVKTRE 160
K+ D QT V F L+ I+ Y E
Sbjct: 119 KENDQLTVRQKIVQTIVKFKKLSDEEINFYCSLDE 153
>gnl|CDD|234855 PRK00884, PRK00884, Maf-like protein; Reviewed.
Length = 194
Score = 84.6 bits (210), Expect = 4e-21
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 11 NLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGE----YVSELAYKK 66
+++LAS+SP R +L+ + L FE DE+ P GE V LA +K
Sbjct: 1 MPQLILASTSPYRRALLEKLQLPFECAAPEVDETPRP--------GESPRQLVLRLAQEK 52
Query: 67 ALEVSQHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGV 125
A ++ PD LIIG+D V ++ + GKP EE A+ L K SGN + +TG+
Sbjct: 53 AQSLASRY------PDHLIIGSDQVCVLDGEITGKPLTEENARAQLRKASGNIVTFYTGL 106
Query: 126 AIL---TKDKDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
A+ T + V F +L+ A I YV+ PL
Sbjct: 107 ALFNSATGHLQTEV-EPFDVHFRHLSEAEIDRYVRKEHPL 145
>gnl|CDD|237692 PRK14367, PRK14367, Maf-like protein; Provisional.
Length = 202
Score = 84.7 bits (209), Expect = 5e-21
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQH 73
+ L S+SPRR +IL +G + +P+ DE+ K YV +A +K
Sbjct: 4 LYLGSNSPRRMEILTQLGYRVVKLPAGIDETV----KAGETPARYVQRMAEEKNRTALTL 59
Query: 74 LKEDN-VEPDL-IIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKD 131
E N PD +I ADT V + ++LGKP + EA EFL++LSG H+V T V I +
Sbjct: 60 FCETNGTMPDFPLITADTCVVSDGIILGKPRSQAEAIEFLNRLSGKQHTVLTAVCIHYRG 119
Query: 132 KDSRFYNQTQVTFANLTPAVISAYVKTREPL 162
K S +V F L+ ISAYV++ EP+
Sbjct: 120 KTSSRVQTNRVVFKPLSSEEISAYVQSGEPM 150
>gnl|CDD|167232 PRK01441, PRK01441, Maf-like protein; Reviewed.
Length = 207
Score = 83.6 bits (207), Expect = 1e-20
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 19/157 (12%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVI-PSNFDESSIPVSKFKSNYGEYVSELAY------- 64
K+VLAS SPRR ++L G++ + + P++ DE+ P E+ LA
Sbjct: 6 KLVLASGSPRRVELLNQAGIEPDRLMPADIDET--PKR------AEHPRSLARRLSREKA 57
Query: 65 KKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTG 124
+ ALE Q +D+ I+ ADTVV++ +L K E +EA + L LSG H V+TG
Sbjct: 58 EAALEALQ--GDDDWRGAYILAADTVVAVGRRILPKAELVDEASQCLRLLSGRNHRVYTG 115
Query: 125 VAILTKDKDSR-FYNQTQVTFANLTPAVISAYVKTRE 160
V ++T D R +T+V F L+ I AY+ + E
Sbjct: 116 VCLVTPDGKLRQKLVETRVRFKRLSREDIEAYLASGE 152
>gnl|CDD|167380 PRK02478, PRK02478, Maf-like protein; Reviewed.
Length = 199
Score = 81.3 bits (201), Expect = 9e-20
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSI--PVSKFKSNYGEYVSELAYKKALEV 70
K++LAS SP R +L++ GL+F ++ DE ++ P+ + + + LA KA++V
Sbjct: 4 KLILASKSPFRRALLENAGLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKAIDV 63
Query: 71 SQHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILT 129
S+ P L+IG D +S+ D + KP+D EEA+ L KLSG TH + + V ++
Sbjct: 64 SERF------PGALVIGCDQTMSLGDEVFHKPKDMEEARRHLQKLSGKTHQLNSAVVLVR 117
Query: 130 KDKDS-RFYNQTQVTFANLTPAVISAYVK 157
K R + +T +L I ++
Sbjct: 118 DGKVLWRHVSIAHMTMRDLDAGFIGRHLA 146
>gnl|CDD|237691 PRK14366, PRK14366, Maf-like protein; Provisional.
Length = 195
Score = 77.5 bits (191), Expect = 2e-18
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 15/158 (9%)
Query: 6 MGQLNNLKIVLASSSPRRSQILKSIGLK-FEVIPSNFDESSIPVSKFKSNYGEYVSELAY 64
M + +NL +LASSS +R +L+ IG+ E++ + DES + K +Y +A
Sbjct: 1 MLKFDNL--ILASSSKQRLALLEQIGVVPGEIVSPDIDESPLK----KELPKDYSIRMAK 54
Query: 65 KKALEVSQHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFT 123
+KA +V ++ PD ++GADTVV +L K E EE+A+E+L LSG H V+T
Sbjct: 55 EKAEKVQ------SLRPDKFVLGADTVVCCGRRILLKAETEEQAEEYLELLSGRRHRVYT 108
Query: 124 GVAILTKDKDSRFYN-QTQVTFANLTPAVISAYVKTRE 160
V + T + T V F L+ I Y+ + E
Sbjct: 109 SVCLYTPGGKLHIRSVVTVVKFKRLSKQEIKYYIASGE 146
>gnl|CDD|167814 PRK04425, PRK04425, Maf-like protein; Reviewed.
Length = 196
Score = 77.2 bits (190), Expect = 3e-18
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 12 LKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVS 71
L +VL +SS R + ++ +G+ F+ +FDE+ + GE + A + A +
Sbjct: 5 LPLVLGTSSVFRREQMERLGIAFQAASPDFDETPML--------GESAPQTALRLAEGKA 56
Query: 72 QHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
+ L P+ LI+GAD V + GKP + A++ L LSG ++ + +L
Sbjct: 57 RSLTGRF--PEALIVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGREIEFYSALVLLNT 114
Query: 131 --DKDSRFYNQTQVTFANLTPAVISAYVKTREP 161
+ R ++T V L I Y+ REP
Sbjct: 115 VTGRMQRHIDKTVVVMRQLDELHILRYL-EREP 146
>gnl|CDD|179873 PRK04694, PRK04694, Maf-like protein; Reviewed.
Length = 190
Score = 75.0 bits (184), Expect = 2e-17
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 16 LASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLK 75
LAS SPRR ++L+ + + F+ + + E V + YV +A +KA L
Sbjct: 4 LASRSPRRRELLQRLDVPFQTLQLDVPE----VRAADESPDHYVQRVALEKA-HAGLALV 58
Query: 76 EDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK-DS 134
+ +++G+DT V + + + GKP D ++A L LSG TH V T V ++ + +
Sbjct: 59 QAADADAIVLGSDTEVVLGERVFGKPVDVDDAIAMLRALSGRTHQVLTAVVLVCAQRAPA 118
Query: 135 RFYNQTQVTFANLTPAVISAYVKTREPL 162
+ ++VTF L A I+AY + EP+
Sbjct: 119 QALVVSEVTFDLLDDAQIAAYAASGEPM 146
>gnl|CDD|235009 PRK02141, PRK02141, Maf-like protein; Reviewed.
Length = 207
Score = 72.1 bits (177), Expect = 3e-16
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYK----KAL 68
+++LASSS R ++L+ + L F+V+ + DE+ + GE + A + KA
Sbjct: 10 RLILASSSRYRRELLERLRLPFDVVSPDIDETPLA--------GETPAATALRLAAAKAR 61
Query: 69 EVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNT---HS---VF 122
V+ + L+IG+D V + + + +GKP E A L + G T HS ++
Sbjct: 62 AVAATIDAP--PGALVIGSDQVATFDGLQIGKPGTHERALAQLQAMRGRTVEFHSALCLY 119
Query: 123 TGVAILTKDKDSRFYNQTQVTFANLTPAVISAYVKTREP 161
T+ +D T+V F LT A + AY++ P
Sbjct: 120 DSRTGETQSEDV----VTRVRFRTLTDAELDAYLRAETP 154
>gnl|CDD|166864 PRK00234, PRK00234, Maf-like protein; Reviewed.
Length = 192
Score = 67.8 bits (166), Expect = 8e-15
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 23/159 (14%)
Query: 12 LKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVS 71
++LASSSP R ++L + L F + DES P E EL + A + +
Sbjct: 2 PPLLLASSSPYRRELLARLRLPFTWASPDIDESHRP--------DESAEELVRRLARQKA 53
Query: 72 QHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTK 130
+ L + P LIIG+D V + +LGKP E A+E L SG + + TG+A+L
Sbjct: 54 EALAGSH--PQHLIIGSDQVAVLGGQILGKPHTFERAREQLLAASGQSVTFLTGLALLNS 111
Query: 131 DKDSRFYNQTQ-------VTFANLTPAVISAYVKTREPL 162
Q V L A I Y++ +PL
Sbjct: 112 AT-----GHCQVDCVPFTVHMRELDRARIERYLEAEQPL 145
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 29.0 bits (66), Expect = 1.2
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 22/64 (34%)
Query: 80 EPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLS-------GNTHSVFTGVAILTKDK 132
E DL+IG D VV+ E LS++ NTH T ++
Sbjct: 795 EADLVIGCDLVVAA-------------GPEALSRMRPGRTRAVVNTHETPTAD--FVRNP 839
Query: 133 DSRF 136
D RF
Sbjct: 840 DWRF 843
>gnl|CDD|179239 PRK01178, rps24e, 30S ribosomal protein S24e; Reviewed.
Length = 99
Score = 27.1 bits (61), Expect = 1.7
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
Query: 18 SSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKED 77
S++P R + K + N D+ + V K K+ YG S+ Y K + + ++
Sbjct: 28 SATPSRKDVRKKLAAML-----NADKELVVVRKIKTEYGMGKSK-GYAKVYDDKERARK- 80
Query: 78 NVEPDLIIGADTVVSINDMMLGKPEDEEEA 107
+EP I+ + E+EEE
Sbjct: 81 -IEPKYILERN----------KIEEEEEEE 99
>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 28.2 bits (63), Expect = 1.8
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 64 YKKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFT 123
YK++L+V +H KE +P L+ T SI MLG E +EE + + L V T
Sbjct: 230 YKQSLDVLKHAKE--SKPGLL----TKTSI---MLGLGETDEEVVQTMEDLRAAGVDVVT 280
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 27.7 bits (62), Expect = 1.9
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 10 NNLKIVLASSSPRRS--QILKSIGLKF---EVIPSNFDESSIPVSKFKSNYGEYV----S 60
+K+ LA++ RR ++L+ +GL VI SN P G + +
Sbjct: 39 KGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPN 98
Query: 61 ELAYKKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGK 100
AL++ E+ L++G D S+ND+ + K
Sbjct: 99 PDKLLAALKLLGVDPEE----VLMVG-D---SLNDIEMAK 130
>gnl|CDD|236020 PRK07449, PRK07449,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate synthase; Validated.
Length = 568
Score = 28.2 bits (64), Expect = 1.9
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 145 ANLTPAVISAYVKTREPL 162
ANL PAVI A + T PL
Sbjct: 85 ANLYPAVIEAGL-TGVPL 101
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 28.3 bits (64), Expect = 2.0
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 145 ANLTPAVISAYVKTREPL 162
ANL PAVI AY + PL
Sbjct: 75 ANLLPAVIEAY-YSGVPL 91
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 28.0 bits (63), Expect = 2.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 76 EDNVEPDLIIGA------DTVVSINDMMLG-KPEDEEEAKEFLSKLSGNT 118
ED V P +II + I ++ + ED+EE +E L K +
Sbjct: 109 EDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATA 158
>gnl|CDD|221464 pfam12215, GBA2_N, beta-Glucocerebrosidase 2 N terminal. This
domain is found in bacteria, archaea and eukaryotes.
This domain is typically between 320 to 354 amino acids
in length. This domain is found associated with
pfam04685. This domain is found in the protein
beta-Glucocerebrosidase 2. It is found just after the
extreme N terminus. This protein is located in the ER.
The N terminal is thought to be the luminal domain while
the C terminal is the cytosolic domain. The catalytic
domain of GBA-2 is unknown.
Length = 311
Score = 27.3 bits (61), Expect = 3.8
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 36 VIPSNFDESSIPVSKFK 52
+IP ++ +SS+PV+ F+
Sbjct: 108 IIPGDYKDSSLPVAVFR 124
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.5 bits (62), Expect = 3.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 69 EVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFL 111
E++ HL ED V+ + I D + +NDM + E+ +A + L
Sbjct: 30 ELNDHLPEDIVDSEQI--EDIIAMLNDMGIQVVEEAPDADDLL 70
>gnl|CDD|162241 TIGR01182, eda, Entner-Doudoroff aldolase.
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
is an enzyme of the Entner-Doudoroff pathway. This
aldolase has another function, 4-hydroxy-2-oxoglutarate
aldolase (EC 4.1.3.16) shown experimentally in
Escherichia coli and Pseudomonas putida [Amino acid
biosynthesis, Glutamate family, Energy metabolism,
Entner-Doudoroff].
Length = 204
Score = 26.9 bits (60), Expect = 3.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKE 109
AL+ + L+++ PD +IGA TV++ PE +A +
Sbjct: 46 ALDAIRLLRKEV--PDALIGAGTVLN--------PEQLRQAVD 78
>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 27.3 bits (61), Expect = 4.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 62 LAYKKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFL 111
LAY A+E+ + LK++ + ++ D + + +L K D E AK +L
Sbjct: 33 LAYSIAIEIQEELKKEGIR---LVTKDEIREVYQKLLEK-GDPEVAKRYL 78
>gnl|CDD|166979 PRK00466, PRK00466, acetyl-lysine deacetylase; Validated.
Length = 346
Score = 27.1 bits (60), Expect = 4.4
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 18 SSSPRRSQILKSIGLKFEV--IPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLK 75
SSS + + I+ EV P N+D+ SI + ++ GE + K L
Sbjct: 174 SSSAKSNLIVDISKKIIEVYKQPENYDKPSIVPTIIRA--GESYNVTPAKLYLHFDVRYA 231
Query: 76 EDNVEPDLI 84
+N DLI
Sbjct: 232 INNKRDDLI 240
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 27.2 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 37 IPSNFDESSIP--VSKFKSNYGEYVSEL 62
IP FD S V KFK + Y+ E
Sbjct: 360 IPGIFDGSDEDYGVYKFKKGFNGYIEEY 387
>gnl|CDD|213672 TIGR01990, bPGM, beta-phosphoglucomutase. This model represents
the beta-phosphoglucomutase enzyme which catalyzes the
interconverison of beta-D-glucose-1-phosphate and
beta-D-glucose-6-phosphate. The 6-phosphate is capable
of non-enzymatic anomerization (alpha <-> beta) while
the 1-phosphate is not. A separate enzyme is responsible
for the isomerization of the alpha anomers.
Beta-D-glucose-1-phosphate results from the
phosphorylysis of maltose (2.4.1.8), trehalose
(2.4.1.64) or trehalose-6-phosphate (2.4.1.216).
Alternatively, these reactions can be run in the
synthetic direction to create the disaccharides. All
sequenced genomes which contain a member of this family
also appear to contain at least one putative maltose or
trehalose phosphorylase. Three species, Lactococcus,
Enterococcus and Neisseria appear to contain a pair of
paralogous beta-PGM's. Beta-phosphoglucomutase is a
member of the haloacid dehalogenase superfamily of
hydrolase enzymes. These enzymes are characterized by a
series of three catalytic motifs positioned within an
alpha-beta (Rossman) fold. beta-PGM contains an inserted
alpha helical domain in between the first and second
conserved motifs and thus is a member of subfamily IA of
the superfamily. The third catalytic motif comes in
three variants, the third of which, containing a
conserved DD or ED, is the only one found here as well
as in several other related enzymes (TIGR01509). The
enzyme from L. lactis has been extensively characterized
including a remarkable crystal structure which traps the
pentacoordinate transition state [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 185
Score = 26.5 bits (59), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 10 NNLKIVLASSSPRRSQILKSIGL--KFEVI 37
NN+KI LAS+S IL+ + L F+ I
Sbjct: 102 NNIKIALASASKNAPTILEKLELIDYFDAI 131
>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6)
[Translation, ribosomal structure and biogenesis].
Length = 222
Score = 26.8 bits (60), Expect = 5.4
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 54 NYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGADTV----VSINDMMLGKPEDEEEAKE 109
+ G V +A + + + V I G TV V N L PE +E E
Sbjct: 109 DKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELE 168
Query: 110 FLSKLSG--------NTHSVFTGVAILTKDK 132
LS+L G N S + G ++ K
Sbjct: 169 ELSELFGVPVDVGTVNFGSPYVGAGLVANSK 199
>gnl|CDD|112414 pfam03596, Cad, Cadmium resistance transporter.
Length = 192
Score = 26.2 bits (58), Expect = 6.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 97 MLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILT 129
+ G +DEEE E L+ SG +S+F VAI+T
Sbjct: 75 IKGDDDDEEEILELLN--SGKNNSLFGTVAIIT 105
>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane
cofactor binding domain.
Length = 213
Score = 26.1 bits (58), Expect = 7.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 9 LNNL--KIVLASSSPRRSQILKSI--GLKFEVIPSNFD 42
L +L V+ +SS RRS LK LKFE + N D
Sbjct: 112 LEDLPAGSVVGTSSLRRSAQLKRKRPDLKFESLRGNVD 149
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 26.5 bits (59), Expect = 8.1
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 145 ANLTPAVISAYVKTREPL 162
ANL PAVI A + +R PL
Sbjct: 84 ANLYPAVIEANL-SRVPL 100
>gnl|CDD|225020 COG2109, BtuR, ATP:corrinoid adenosyltransferase [Coenzyme
metabolism].
Length = 198
Score = 26.1 bits (58), Expect = 8.8
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 64 YKKALEVSQHLKE--DNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSV 121
A +H KE + + DL+I + ++ +L EE L +TH +
Sbjct: 104 IAAAKAGWEHAKEALADGKYDLVILDELNYALRYGLL----PLEEVVALLKARPEHTHVI 159
Query: 122 FTG 124
TG
Sbjct: 160 ITG 162
>gnl|CDD|238276 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of porphobilinogen (PBG)
into hydroxymethylbilane (HMB). HMBS consists of three
domains, and is believed to bind substrate through a
hinge-bending motion of domains I and II. HMBS is found
in all organisms except viruses.
Length = 292
Score = 26.0 bits (58), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 13 KIVLASSSPRRSQILKSI--GLKFEVIPSNFD 42
V+ +SS RR LK LKFE + N D
Sbjct: 117 GSVVGTSSLRRQAQLKRKRPDLKFEPLRGNVD 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,990,677
Number of extensions: 718056
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 64
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.0 bits)