RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14704
(162 letters)
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei;
structural genomics, structural genomics consortium,
unknown function; 2.00A {Homo sapiens}
Length = 230
Score = 197 bits (503), Expect = 5e-65
Identities = 65/163 (39%), Positives = 99/163 (60%), Gaps = 11/163 (6%)
Query: 9 LNNLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKAL 68
L + ++VLAS+SPRR +IL + GL+FEV+PS F E S + Y E A +KAL
Sbjct: 1 LLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASF--ATPYGYAMETAKQKAL 58
Query: 69 EVSQHLKEDNVEPD-LIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAI 127
EV+ L + ++ ++IGADT+V++ ++L KP D+++A LS+LSG HSVFTGVAI
Sbjct: 59 EVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAI 118
Query: 128 LTKDKDSR--------FYNQTQVTFANLTPAVISAYVKTREPL 162
+ FY +T+V F+ L+ ++ YV + EP+
Sbjct: 119 VHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPM 161
>1ex2_A Protein MAF; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP:
c.51.4.2 PDB: 1exc_A*
Length = 189
Score = 191 bits (489), Expect = 2e-63
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQ 72
++LAS SPRR ++L + L + +I S +E + E V LA +KA V+
Sbjct: 4 PLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNR----NFSPEENVQWLAKQKAKAVAD 59
Query: 73 HLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK 132
++IGADT+V ++ LGKP+D+EEA L +LSG +HSV T V+I ++
Sbjct: 60 LHPHA-----IVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENH 114
Query: 133 DSRFYNQTQVTFANLTPAVISAYVKTREPL 162
FY++T+V F +L+ I Y++T+EP+
Sbjct: 115 SETFYDKTEVAFWSLSEEEIWTYIETKEPM 144
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta
motif, structural genomics, PSI, protein structure
initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Length = 207
Score = 184 bits (470), Expect = 3e-60
Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 13/159 (8%)
Query: 13 KIVLASSSPRRSQILKSIG----LKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKAL 68
+++ +SS R+ +L+ F ++P + DE + ++ E +A K
Sbjct: 11 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYR----AADPFELTESIARAKMK 66
Query: 69 EVSQHLKEDNV---EPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGV 125
V + ++ + P + + D VV D + KP E+ + F++ SG
Sbjct: 67 AVLEKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATY 126
Query: 126 AILTKDKDSR--FYNQTQVTFANLTPAVISAYVKTREPL 162
A+ ++ +N+T+ F+ ++ ++ +
Sbjct: 127 ALCVVGTENVLVAHNETETFFSKFGDDIVERTLERGACM 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 6e-05
Identities = 30/193 (15%), Positives = 53/193 (27%), Gaps = 60/193 (31%)
Query: 6 MGQLNNLKIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYK 65
+ L L + + RS +I L+ I ++ + Y+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--------------QAELRRLLKSKPYE 244
Query: 66 KALEVSQHLKEDNV-EPDLI----IGADTVV-----SINDMMLG------------KPED 103
L V L NV + ++ + D +
Sbjct: 245 NCLLV---L--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 104 EEEAKEFLSK-------------LSGN--THSVFTGVAILTKDKDSRFYNQTQVTFANLT 148
+E K L K L+ N S+ A +D + + N V LT
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHVNCDKLT 356
Query: 149 PAVISAYVKTREP 161
+I + + EP
Sbjct: 357 -TIIESSLNVLEP 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 3e-04
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 55/169 (32%)
Query: 41 FDE------SSIP-VSKFKSNYGEYVSELA---------YKKALEVSQHLKEDNVEPDL- 83
F+E + V E +SEL + + L + + L+ + PD
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 84 ----------IIG----ADTVVSINDMMLGK-PEDEEEAKEFLSKLSGNTHSVFTGVAI- 127
+IG A VV+ +LG P E + +L +G++ + T VAI
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAK--LLGFTPG---ELRSYLKGATGHSQGLVTAVAIA 284
Query: 128 LTKDKDSRFYNQT--------------QVTF--ANLTPAVISAYVKTRE 160
T +S F+ + +L P+++ ++ E
Sbjct: 285 ETDSWES-FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Score = 36.6 bits (84), Expect = 0.003
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 52/173 (30%)
Query: 14 IVLASSSPRRS---------QILKSIGLKF-EVIPSNFDESSIPVSKFKSNYGE------ 57
+ +A + S +L IG++ E P+ SI + N E
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLEN-NEGVPSPM 338
Query: 58 -YVSELAYKKALE-----VSQHLKEDN-VEPDLIIGADT-VVSINDMMLGKPEDEEEAKE 109
+S L ++ ++ + HL VE L+ GA VVS G P+
Sbjct: 339 LSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS------GPPQS------ 385
Query: 110 FLSKLSG-NTHSVFTGVAILTKDKDSRFYNQTQVTFANLTPAVISAYVKTREP 161
L G N L K K +Q+++ F+ + ++ P
Sbjct: 386 ----LYGLNLT--------LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 28.1 bits (62), Expect = 1.5
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 35/124 (28%)
Query: 14 IVLASSSPRRSQILKSIGLKFEVIPSNFDES-----SIPVSKFKSNYGEYVSEL-AYKKA 67
+ L + LKS GL IP++ + S+ GEY + L +
Sbjct: 1736 LTLMEKAAFE--DLKSKGL----IPAD---ATFAGHSL---------GEY-AALASLADV 1776
Query: 68 LEVSQHLK---------EDNVEPDLIIGADT-VVSINDMMLGKPEDEEEAKEFLSKLSGN 117
+ + ++ + V D + ++ +++IN + +E + + ++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 118 THSV 121
T +
Sbjct: 1837 TGWL 1840
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 34.9 bits (81), Expect = 0.005
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 10 NNLKIVLASSSPRRSQILKSIGLK--FEVI 37
N +KI LAS+S +L+ + L F+ I
Sbjct: 106 NKIKIALASASKNGPFLLERMNLTGYFDAI 135
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 35.0 bits (81), Expect = 0.006
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 10 NNLKIVLASSSPRRSQILKSIGLK--FEVI 37
+ + LAS S IL ++ L+ F
Sbjct: 110 QQISVGLASVSLNAPTILAALELREFFTFC 139
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 33.8 bits (78), Expect = 0.016
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 10 NNLKIVLASSSPRRSQILKSIGLK--FEVI 37
N+KI LASSS +IL+ + + F I
Sbjct: 107 ENIKIGLASSSRNAPKILRRLAIIDDFHAI 136
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 33.3 bits (77), Expect = 0.017
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 10 NNLKIVLASSSPRRS--QILKSIGLK--FEVI 37
L+I LASSS + + L+ L+ F+++
Sbjct: 104 QGLEIGLASSSVKADIFRALEENRLQGFFDIV 135
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 33.4 bits (77), Expect = 0.021
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 10 NNLKIVLASSSPRR--SQILKSIGLK--FEVI 37
L + LAS+SP ++L L+ F+ +
Sbjct: 109 QGLLVGLASASPLHMLEKVLTMFDLRDSFDAL 140
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 31.8 bits (73), Expect = 0.071
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 10 NNLKIVLASSSPRRS--QILKSIGLK--FEVI 37
+K+ LA+S+P+R + L+ + L+ F+V+
Sbjct: 99 KRIKLALATSTPQREALERLRRLDLEKYFDVM 130
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit
DNA-dependent RNA polymerase in mitochondria,
transferase; 2.50A {Homo sapiens}
Length = 1134
Score = 31.7 bits (70), Expect = 0.11
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 58 YVSELAYKKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKL 114
+ + A+K+ + V +K+ + PDL+ + + M + +D + L ++
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLL----SYAAALQCMGRQDQDAGTIERCLEQM 227
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.18
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 63 AYKKALEVSQHLKEDNVEPDLIIGADTV 90
A KK L+ S L D+ P L I A T+
Sbjct: 21 ALKK-LQASLKLYADDSAPALAIKA-TM 46
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 29.5 bits (67), Expect = 0.41
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 10 NNLKIVLASSSPRRS--QILKSIGLK--FEVI 37
NLK +A+S + LK++ L I
Sbjct: 106 ENLKWCIATSGGIDTATINLKALKLDINKINI 137
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 28.4 bits (64), Expect = 0.84
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 10 NNLKIVLASSSPRRS---QILKSIGLK--FEVI 37
L ++ + S + S ++ + E++
Sbjct: 124 EGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 27.7 bits (62), Expect = 1.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 10 NNLKIVLASSSPRRSQILKSIGLK-----FEVI 37
+ + LA+SS S +K+ K F I
Sbjct: 127 HGIPFALATSSRSASFDMKTSRHKEFFSLFSHI 159
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 27.3 bits (61), Expect = 2.4
Identities = 3/33 (9%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 10 NNLKIVLASSSPRRS---QILKSIGLK--FEVI 37
L ++ + S + S ++ + ++
Sbjct: 123 EGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLM 155
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase;
lyase; 1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 26.3 bits (58), Expect = 4.0
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDM 96
A+E + L++ P+++IGA T+++
Sbjct: 72 AVEAIRLLRQAQ--PEMLIGAGTILNGEQA 99
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown
function; HET: MSE; 1.89A {Haemophilus influenzae}
SCOP: c.1.10.1
Length = 224
Score = 26.3 bits (58), Expect = 4.1
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDM 96
A + + L+ + PD +I A TV++ +
Sbjct: 55 AADAIRLLRANR--PDFLIAAGTVLTAEQV 82
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate,
lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB:
1vlw_A
Length = 205
Score = 26.3 bits (58), Expect = 5.0
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDM 96
A V + L IIGA TV S+
Sbjct: 48 ADTVIKELSFLKE-KGAIIGAGTVTSVEQC 76
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein;
1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Length = 399
Score = 26.4 bits (59), Expect = 5.2
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 141 QVTFANLTPAVIS 153
Q+ FA +T A+++
Sbjct: 93 QMMFAAVTIAILT 105
>1u7g_A Probable ammonium transporter; right handed helical bundle,
transmembrane helices, ammonia membrane protein, RH
protein, transport protein; HET: MSE BOG; 1.40A
{Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A*
1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A*
3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A
2nuu_A* 3c1j_A 2npk_A
Length = 385
Score = 26.4 bits (59), Expect = 5.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 141 QVTFANLTPAVIS 153
Q +FA +T +I
Sbjct: 104 QGSFACITVGLIV 116
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 26.1 bits (58), Expect = 5.4
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 11 NLKIVLASSSPRRS--QILKSIGLK--FEVIPSNFDESSIPVSK 50
+ S+S +L +GLK F + + K
Sbjct: 100 TTPRCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVK 143
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase,
sulfate, beta-BA lyase; 2.20A {Pseudomonas putida}
SCOP: c.1.10.1
Length = 225
Score = 25.6 bits (56), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 67 ALEVSQHLKEDNVEPDLIIGADTVVSINDM 96
L+ Q L+E P+L +GA TV+ +
Sbjct: 64 GLKAIQVLREQR--PELCVGAGTVLDRSMF 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,290,619
Number of extensions: 130144
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 39
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)