RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14704
(162 letters)
>d2amha1 c.51.4.2 (A:7-207) Maf homologue Tb11.01.5890 {Trypanosoma
brucei [TaxId: 5691]}
Length = 201
Score = 88.8 bits (219), Expect = 3e-23
Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 7/156 (4%)
Query: 13 KIVLASSSPRRSQILKSIG----LKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKAL 68
+++ +SS R+ +L+ F ++P + DE + + E ++ K L
Sbjct: 5 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYR-AADPFELTESIARAKMKAVL 63
Query: 69 EVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAIL 128
E ++ P + + D VV D + KP E+ + F++ SG A+
Sbjct: 64 EKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYALC 123
Query: 129 TKDKDSR--FYNQTQVTFANLTPAVISAYVKTREPL 162
++ +N+T+ F+ ++ ++ +
Sbjct: 124 VVGTENVLVAHNETETFFSKFGDDIVERTLERGACM 159
>d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 76.5 bits (187), Expect = 1e-18
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 13 KIVLASSSPRRSQILKSIGLKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQ 72
++LAS SPRR ++L + L + +I S +E E + +
Sbjct: 4 PLILASQSPRRKELLDLLQLPYSIIVSEVEEKLN--------RNFSPEENV-QWLAKQKA 54
Query: 73 HLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTHSVFTGVAILTKDK 132
D ++IGADT+V ++ LGKP+D+EEA L +LSG +HSV T V+I ++
Sbjct: 55 KAVADLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENH 114
Query: 133 DSRFYNQTQVTFANLTPAVISAYVKTREPL 162
FY++T+V F +L+ I Y++T+EP+
Sbjct: 115 SETFYDKTEVAFWSLSEEEIWTYIETKEPM 144
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 227
Score = 30.2 bits (67), Expect = 0.074
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 75 KEDNVEPDLIIGADTVVSINDMMLGKPEDEEEAKEFLSKLSGNTH 119
K+ V P + G+ +++ + PE E + E K +G H
Sbjct: 187 KKVPVLPMVAGGS----GLDEFINFDPEVERQQTELRHKRTGGKH 227
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 26.7 bits (58), Expect = 1.4
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 32 LKFEVIPSNFDESSIPVSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGADTVV 91
+ ++ S+ D + + +E + + + + L+ GAD +
Sbjct: 98 HQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLE 157
Query: 92 SINDMMLGKPEDEEE 106
S L K ED +
Sbjct: 158 SFAVPNLWKSEDITQ 172
>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease
{Bacillus pasteurii [TaxId: 1474]}
Length = 180
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 77 DNVEPDLIIGADT-VVSINDMML 98
D V P++I+G T V++ ++
Sbjct: 107 DGVTPNMIVGTATEVIAAEGKIV 129
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human
(Homo sapiens), FKSG76 [TaxId: 9606]}
Length = 233
Score = 25.2 bits (54), Expect = 3.6
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
Query: 48 VSKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGADTVVSINDMMLGKPEDEEEA 107
+ S ++ + E L+ GAD + + L K +E
Sbjct: 95 LRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEI 154
Query: 108 KEFLSKLSGNTHSVFTGVAILTKDKDSRFYNQTQVTFANLTPAVISA 154
E L + + R + ISA
Sbjct: 155 VE-KFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISA 200
>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga
maritima [TaxId: 2336]}
Length = 308
Score = 25.0 bits (54), Expect = 4.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 83 LIIGADTVVSINDMMLGKPEDEEEAKEFLSK 113
+ V + + +L PE+EE K +L +
Sbjct: 278 RTKSDEQVEKVIEEILALPENEEMRKHYLKR 308
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 24.2 bits (51), Expect = 6.7
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 25 QILKSIGLKFEVIPSNFDES 44
+I + +G + IP+ D+S
Sbjct: 146 KIEQELGTEIAAIPATIDKS 165
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA
polymerases {Bacteriophage RB69 [TaxId: 12353]}
Length = 375
Score = 24.5 bits (52), Expect = 7.2
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 49 SKFKSNYGEYVSELAYKKALEVSQHLKEDNVEPDLIIGADTVVSINDM 96
+K+ YG+ + + + SQ +K +G D
Sbjct: 47 TKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLS 94
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 24.4 bits (52), Expect = 8.2
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 86 GADTVVSINDMMLGKPEDEEEAKEFLSK--LSGNTHSVFTG----VAILTKDKDSRF 136
G+ +++ + + +EEA + S +G + + +G V ++ KD+ +
Sbjct: 130 GSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,787
Number of extensions: 23325
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 14
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.7 bits)