Query psy14705
Match_columns 329
No_of_seqs 95 out of 115
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 18:31:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4164|consensus 100.0 2.7E-75 5.9E-80 569.0 15.8 242 1-278 256-497 (497)
2 KOG4164|consensus 99.8 4.5E-22 9.9E-27 196.1 4.4 142 156-329 352-497 (497)
3 KOG0794|consensus 99.7 4.6E-17 1E-21 152.2 9.2 148 156-308 32-199 (264)
4 TIGR00569 ccl1 cyclin ccl1. Un 99.7 6E-17 1.3E-21 155.4 9.9 171 137-308 19-211 (305)
5 PF00134 Cyclin_N: Cyclin, N-t 99.5 3.3E-14 7.2E-19 114.8 6.0 121 135-261 7-127 (127)
6 KOG0834|consensus 99.4 7.8E-13 1.7E-17 128.5 8.0 134 169-305 47-197 (323)
7 COG5333 CCL1 Cdk activating ki 99.4 8.8E-13 1.9E-17 126.8 7.6 149 156-308 36-197 (297)
8 KOG0835|consensus 99.1 1.5E-10 3.3E-15 113.0 9.7 148 157-307 18-187 (367)
9 cd00043 CYCLIN Cyclin box fold 98.8 1.9E-08 4E-13 74.1 7.5 83 164-253 5-88 (88)
10 KOG2496|consensus 98.7 5.7E-08 1.2E-12 94.4 9.6 170 137-311 19-216 (325)
11 smart00385 CYCLIN domain prese 98.5 6.4E-07 1.4E-11 65.4 7.0 78 169-253 4-82 (83)
12 KOG0656|consensus 98.5 4.2E-07 9E-12 89.3 7.8 110 156-268 72-187 (335)
13 PRK00423 tfb transcription ini 97.8 0.00014 3.1E-09 69.9 10.3 127 147-282 105-234 (310)
14 KOG0653|consensus 97.5 0.00019 4.2E-09 71.2 6.5 114 159-278 155-270 (391)
15 PF08613 Cyclin: Cyclin; Inte 97.3 0.0016 3.5E-08 56.3 9.5 79 178-260 66-149 (149)
16 COG5024 Cyclin [Cell division 97.3 0.0011 2.4E-08 67.7 9.0 138 136-278 181-324 (440)
17 PF00382 TFIIB: Transcription 96.5 0.011 2.4E-07 44.8 6.8 69 170-245 3-71 (71)
18 KOG0655|consensus 96.1 0.022 4.8E-07 57.1 8.4 125 145-278 131-257 (408)
19 KOG1674|consensus 88.2 1.9 4.1E-05 40.3 7.3 93 178-278 90-196 (218)
20 PRK00423 tfb transcription ini 88.1 3.3 7.1E-05 40.2 9.1 84 138-224 194-277 (310)
21 COG1405 SUA7 Transcription ini 82.5 12 0.00025 36.7 10.0 97 178-281 112-208 (285)
22 KOG1597|consensus 82.2 16 0.00035 36.4 10.8 109 162-275 102-211 (308)
23 KOG0654|consensus 73.8 2.5 5.4E-05 42.7 2.6 108 156-267 132-239 (359)
24 PF02984 Cyclin_C: Cyclin, C-t 73.5 6.9 0.00015 30.7 4.6 44 178-221 15-58 (118)
25 PF09749 HVSL: Uncharacterised 53.4 12 0.00026 34.9 2.9 123 104-239 17-168 (239)
26 COG1405 SUA7 Transcription ini 49.5 52 0.0011 32.3 6.6 82 138-222 169-250 (285)
27 KOG1675|consensus 36.3 73 0.0016 32.3 5.4 84 188-274 215-300 (343)
28 PF09164 VitD-bind_III: Vitami 35.1 31 0.00067 27.6 2.1 19 137-155 12-30 (68)
29 KOG1598|consensus 35.0 79 0.0017 33.8 5.7 52 167-221 73-124 (521)
30 KOG0834|consensus 34.5 23 0.0005 35.4 1.7 41 182-222 171-211 (323)
31 PF03139 AnfG_VnfG: Vanadium/a 23.1 81 0.0018 27.5 2.8 27 142-168 63-90 (112)
32 TIGR02267 Myxococcus xanthus p 21.9 33 0.00071 30.2 0.2 12 317-328 106-117 (123)
33 TIGR02930 vnfG_nitrog V-contai 21.7 93 0.002 27.0 2.9 27 142-168 60-87 (109)
34 TIGR02929 anfG_nitrog Fe-only 21.5 94 0.002 27.0 2.9 27 142-168 60-87 (109)
35 PF11357 Spy1: Cell cycle regu 20.9 2.8E+02 0.0061 24.7 5.8 84 179-265 28-112 (131)
No 1
>KOG4164|consensus
Probab=100.00 E-value=2.7e-75 Score=569.03 Aligned_cols=242 Identities=52% Similarity=0.792 Sum_probs=213.0
Q ss_pred CCccccccccccccccccccCCCCCCcccccccccccccCccchhhhcCCCCCCCcceeeeeccCcccccccccCCCCCC
Q psy14705 1 MSYGALLTPSRYQSKDRKESDVGDTPHSAKSYSTRCFSYDAGTLRAVSNLIPASPPIAGCFSYDAGTLRAVSNLIPASPP 80 (329)
Q Consensus 1 ~sy~~~l~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~ 80 (329)
|||+++|+|+++++.+++.- + .+ .+....- .++-++++.++||+.|.+.++.+.+ +|-
T Consensus 256 isy~~~l~Pt~al~~~r~~i--~-----~~---s~~~s~r-------n~~~~r~l~~~r~~~~~a~nr~ss~-----e~l 313 (497)
T KOG4164|consen 256 ISYKRFLSPTNALFDKRPAI--D-----SK---SRRPSFR-------NGETSRELFIERIEVPQAVNRDSST-----ERL 313 (497)
T ss_pred eeeccccCchhhhhhccccc--c-----cc---ccccccc-------CCcchhhccceeeccccccCCCccc-----ccc
Confidence 79999999999999887651 1 11 1111111 1134468999999999988875532 222
Q ss_pred ccccCCccccccCCCCCCCCCCCCCCCCCcccccCcceeEEEeCCeeEEeeccCCchhhHHHHhHHHHHhCCCcccchHh
Q psy14705 81 IAVLDNKAGVDWELGDPYSGPYSPNLLDDPELIAGKHRTLLTFTSYMTSVIDYVRPLDLKKELNDKFKEKFPHIKLTLSK 160 (329)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~YdP~~LDdPel~~GkhRtvl~l~sy~~Svi~yvkp~~LKkeLN~~FrekfP~I~LTLSK 160 (329)
-++++ .+..|||++||||+|.+|||++|+.|+|||++||+||+|++|||||||.||||||+|+|||||
T Consensus 314 Gsd~~------------d~~dydasllDdPq~~~gkhk~~l~F~symttvidyVrpsdlKkdmNe~FreKfP~IkLTLSK 381 (497)
T KOG4164|consen 314 GSDIG------------DKCDYDASLLDDPQWPCGKHKRVLIFSSYMTTVIDYVRPSDLKKDMNETFREKFPHIKLTLSK 381 (497)
T ss_pred cCccc------------cccccCcccccCcccccccccceeEeccccceeEEEechHHHHHHHhHHHHHhCCeeEEeHHH
Confidence 12222 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhh
Q psy14705 161 LRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRL 240 (329)
Q Consensus 161 lRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri 240 (329)
||||||||++|+ +.| +||++|||+||||||||||+|+++|+|||||||||||||+||||.++..+|.+|+++|++||+
T Consensus 382 irSlKREMr~l~-~d~-~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~ 459 (497)
T KOG4164|consen 382 IRSLKREMRELG-EDC-GIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRL 459 (497)
T ss_pred HHHHHHHHHHhh-hcc-CccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc
Confidence 999999999999 566 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhh
Q psy14705 241 NRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEK 278 (329)
Q Consensus 241 ~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~ 278 (329)
||+||+++||+||++|||.|++|.++|+|||+||++|+
T Consensus 460 nrrdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~e~ 497 (497)
T KOG4164|consen 460 NRRDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQES 497 (497)
T ss_pred cHHhhhhhhhhHHHhhhhhccCChhhcchHHHHHhhcC
Confidence 99999999999999999999999999999999999864
No 2
>KOG4164|consensus
Probab=99.85 E-value=4.5e-22 Score=196.06 Aligned_cols=142 Identities=36% Similarity=0.561 Sum_probs=115.5
Q ss_pred cchHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcC----cchhhHHHHH
Q psy14705 156 LTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND----VKGDALKTLI 231 (329)
Q Consensus 156 LTLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne----~k~~~Lk~li 231 (329)
++.-|-..||.+|.+-..+..++|.+ |++. +| ++++..|+|- ..|-+=-.-+.. ..+-.|+++|
T Consensus 352 idyVrpsdlKkdmNe~FreKfP~IkL-TLSK---------ir-SlKREMr~l~-~d~~id~~TVa~AyVYFEKliLkgli 419 (497)
T KOG4164|consen 352 IDYVRPSDLKKDMNETFREKFPHIKL-TLSK---------IR-SLKREMRELG-EDCGIDVVTVAMAYVYFEKLILKGLI 419 (497)
T ss_pred EEEechHHHHHHHhHHHHHhCCeeEE-eHHH---------HH-HHHHHHHHhh-hccCccceeehhHHHHHHHHHHhhhh
Confidence 45667789999999988888877776 7776 54 8899999987 555442221111 1244567776
Q ss_pred HHHHHHHhhchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhhhcCCccchhccccccchhhhhhhHHHHHHHhcc
Q psy14705 232 EKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGGRKTENIFRLNRKDLFAAEFAVLVALEFGL 311 (329)
Q Consensus 232 e~ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~~~g~~k~e~~~r~~r~dl~~~e~~~lvaL~~~l 311 (329)
. ..||| +++..|||++++.+ ++....| +.|+ ||+|+.||+||+|||+|||||||||||+|
T Consensus 420 s------K~NRK--lcAGAclLlaaKmn-D~Kks~v----KslI-------ek~Ee~fR~nrrdLia~Ef~VlvaLefaL 479 (497)
T KOG4164|consen 420 S------KQNRK--LCAGACLLLAAKMN-DLKKSTV----KSLI-------EKLEEQFRLNRRDLIAFEFPVLVALEFAL 479 (497)
T ss_pred h------hhhhh--HHHHHHHHHHHHhh-hhhhHHH----HHHH-------HHHHHHhcccHHhhhhhhhhHHHhhhhhc
Confidence 6 57899 79999999999999 8888776 4577 69999999999999999999999999999
Q ss_pred cCCcccccchhhhhhhcC
Q psy14705 312 HLPTWDILPHFQRLTYES 329 (329)
Q Consensus 312 ~~p~~~~~ph~~rl~~~~ 329 (329)
|+|++||+||||||.||+
T Consensus 480 ~~~~~eVlPHy~RL~~e~ 497 (497)
T KOG4164|consen 480 HLPEHEVLPHYRRLQQES 497 (497)
T ss_pred cCChhhcchHHHHHhhcC
Confidence 999999999999999986
No 3
>KOG0794|consensus
Probab=99.70 E-value=4.6e-17 Score=152.16 Aligned_cols=148 Identities=24% Similarity=0.319 Sum_probs=119.4
Q ss_pred cchHhHHHHHHHHHH----HHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHH-
Q psy14705 156 LTLSKLRSLKREMRK----IAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTL- 230 (329)
Q Consensus 156 LTLSKlRsLKrem~~----Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~l- 230 (329)
|+-.+.++||.-|-+ +|.+. ++.|..+|||.|||.|+++|.+++..+..|+|++|++||+|++|++-..++.+
T Consensus 32 l~~d~~~~l~i~~~n~I~~lg~~l--klRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~ 109 (264)
T KOG0794|consen 32 LSEDEYSKLKIFMANVIQKLGQHL--KLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECPIVHIRLLV 109 (264)
T ss_pred ccHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 666788888888865 56543 89999999999999999999999999999999999999999999873222222
Q ss_pred --HHHH-------HHHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc----cch
Q psy14705 231 --IEKT-------ENIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKD 295 (329)
Q Consensus 231 --ie~i-------e~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~d 295 (329)
...+ .+.+...+++|++.||-++.+|++.|.| ||..+...+|-.-+++ .+-++..|||+ |.|
T Consensus 110 ~~a~~L~~~f~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~d---~~~l~~~W~ivNDSyr~D 186 (264)
T KOG0794|consen 110 NEAKVLKTRFSYWPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGIND---QKLLQLAWSIVNDSYRMD 186 (264)
T ss_pred HHHHHHhhhcccchhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhcccc---hhhhhhhHhhhcchhhcc
Confidence 2222 4556778999999999999999999988 9988765443333321 13678899998 999
Q ss_pred hhhhhhHHHHHHH
Q psy14705 296 LFAAEFAVLVALE 308 (329)
Q Consensus 296 l~~~e~~~lvaL~ 308 (329)
|+..++|..+||.
T Consensus 187 l~Ll~PPh~IalA 199 (264)
T KOG0794|consen 187 LCLLYPPHQIALA 199 (264)
T ss_pred eeeecCHHHHHHH
Confidence 9999999999985
No 4
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.69 E-value=6e-17 Score=155.39 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=124.8
Q ss_pred hhhHHHHhHHHHHhCC--------Cc-ccchHhHHHHHHHHHH----HHhhhcCCcchHHHHHHHHHHHHHHHHhhhccc
Q psy14705 137 LDLKKELNDKFKEKFP--------HI-KLTLSKLRSLKREMRK----IAKVDNSNLELLTVAQAYVYFEKLILLALINKE 203 (329)
Q Consensus 137 ~~LKkeLN~~FrekfP--------~I-~LTLSKlRsLKrem~~----Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~ 203 (329)
.+++.+.|++||+++- .. -||...-+.|.+.... ++....+.+-+.|+|+|.|||.||++++++.+.
T Consensus 19 ~~~R~~~N~~~~~~~~~~~~~~~~~~~~Lt~eeE~~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~ 98 (305)
T TIGR00569 19 QEKRADANAKFREAHEEEEKVLEAKPIFLTPEEELDLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEY 98 (305)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhc
Confidence 3567889999999982 11 2777777788776655 444331228899999999999999999999999
Q ss_pred ccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhh--
Q psy14705 204 NRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKF-- 279 (329)
Q Consensus 204 NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~-- 279 (329)
+++++|+|||+||+|++|.+.. +..+.+.+.+.....+.+|+.+|+.||.+|+|+|.+ |+..+..++.-+.....
T Consensus 99 ~p~~Ia~tclfLA~KvEE~~~s-i~~fv~~~~~~~~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~ 177 (305)
T TIGR00569 99 HPKIIMLTCVFLACKVEEFNVS-IDQFVGNLKETPLKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGL 177 (305)
T ss_pred CHHHHHHHHHHHHHhccccCcC-HHHHHhhccCCchhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccc
Confidence 9999999999999999998652 334443332222345689999999999999999998 88887776544422110
Q ss_pred -cCCccchhccccc----cchhhhhhhHHHHHHH
Q psy14705 280 -LGGRKTENIFRLN----RKDLFAAEFAVLVALE 308 (329)
Q Consensus 280 -~g~~k~e~~~r~~----r~dl~~~e~~~lvaL~ 308 (329)
......+..|++. ++|++..+.|-.||+-
T Consensus 178 ~~~~~l~q~a~~~lndsl~Td~~L~y~Ps~IAlA 211 (305)
T TIGR00569 178 ENPEYLRKHADKFLNRTLLTDAYLLYTPSQIALA 211 (305)
T ss_pred cchHHHHHHHHHHHHHHHcCCceecCCHHHHHHH
Confidence 0111224456643 9999999999888763
No 5
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.49 E-value=3.3e-14 Score=114.77 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=89.7
Q ss_pred CchhhHHHHhHHHHHhCCCcccchHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHH
Q psy14705 135 RPLDLKKELNDKFKEKFPHIKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLL 214 (329)
Q Consensus 135 kp~~LKkeLN~~FrekfP~I~LTLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLL 214 (329)
...+.|...|..|-++.| +++...-+.+-.-|..++... +++..|+++|..||+|++.++.+++.+.+++|+|||+
T Consensus 7 ~~~e~~~~~~~~~~~~~~--~~~~~~r~~~~~~i~~~~~~~--~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~ 82 (127)
T PF00134_consen 7 LEKELKYKPNPDYLEQQP--EITPEMRQIIIDWIIELCQRL--KLSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLF 82 (127)
T ss_dssp HHHHHHTTCCTTHGTGTS--SHHHHHHHHHHHHHHHHHHHT--T-BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHH
T ss_pred HHHHHHHCcCccccccCh--hcCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHH
Confidence 344555555666666666 455544444555566666654 8999999999999999999999999999999999999
Q ss_pred HHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhcccc
Q psy14705 215 LSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLH 261 (329)
Q Consensus 215 LAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~ 261 (329)
||+|++|..-..++.++... ....++++|+..|+.+|.+|+|+|+
T Consensus 83 lA~K~~e~~~~~~~~~~~~~--~~~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 83 LASKMEEDNPPSISDLIRIS--DNTFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHTSS--HHHHHHHHT--TTSSHHHHHHHHHHHHHHHTTT---
T ss_pred HhhhhhccccchHHHHHHHH--cCCCCHHHHHHHHHHHHHHCCCCcC
Confidence 99999998656667666544 2367899999999999999999874
No 6
>KOG0834|consensus
Probab=99.38 E-value=7.8e-13 Score=128.45 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=103.8
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcch---hhHHHH---HH----HHHHHH
Q psy14705 169 RKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKG---DALKTL---IE----KTENIF 238 (329)
Q Consensus 169 ~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~---~~Lk~l---ie----~ie~~f 238 (329)
.++|... ++-+.|+|+|.+||+||++..++++.++..+|++|||||+|+||.++ ++|+.- +. ..++.|
T Consensus 47 ~elg~~L--~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~~~~~~~~ 124 (323)
T KOG0834|consen 47 QELGVRL--KMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKDLELEEVY 124 (323)
T ss_pred HHHHHHc--CCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCcccccHHHHH
Confidence 4567666 78899999999999999999999999999999999999999999865 555322 22 456888
Q ss_pred hhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCC-ccchhccccc----cchhhhhhhHHHH
Q psy14705 239 RLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGG-RKTENIFRLN----RKDLFAAEFAVLV 305 (329)
Q Consensus 239 ri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~-~k~e~~~r~~----r~dl~~~e~~~lv 305 (329)
.-.|++|+..|..+|.+|+|+|.+ ||..|+..++++.... +.. +-....|-+. +..++.-|.|-.|
T Consensus 125 ~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~-~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~I 197 (323)
T KOG0834|consen 125 WELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADE-NLKQPLAQAAWNFVNDSLRTTLCLQYSPHSI 197 (323)
T ss_pred HHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhh-hccccHHHHHHHHhchhheeeeeEeecCcEE
Confidence 899999999999999999999998 9999998888886533 100 1234455333 5556666655433
No 7
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.37 E-value=8.8e-13 Score=126.79 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=111.0
Q ss_pred cchHhH--HHHH--HHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhH-HHH
Q psy14705 156 LTLSKL--RSLK--REMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDAL-KTL 230 (329)
Q Consensus 156 LTLSKl--RsLK--rem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~L-k~l 230 (329)
||+.+- +.++ ..+..++... ++-+.++|+|..||.|+++++.+.-.+.+-++++|++||+|++|+..+.. ...
T Consensus 36 l~~~~e~~l~i~~~k~i~~l~~~L--~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~ 113 (297)
T COG5333 36 LTLEKELNLVIYYLKLIMDLCTRL--NLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDTPRDISIESF 113 (297)
T ss_pred cchhhhhhHHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccccchhhHHHH
Confidence 554443 3333 3345567766 79999999999999999999999999999999999999999999754332 111
Q ss_pred HHH-H-HHHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc----cchhhhhhhH
Q psy14705 231 IEK-T-ENIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKDLFAAEFA 302 (329)
Q Consensus 231 ie~-i-e~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~dl~~~e~~ 302 (329)
..+ + -+...-+|+.|++.||-+|.+|+|+++| |+..+.-.++-++..+ ..+..+..|.+. |.|++.+++|
T Consensus 114 ~~~~~~se~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~--~~~~~~~aw~~inDa~~t~~~llypp 191 (297)
T COG5333 114 EARDLWSEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKD--KYKLLQIAWKIINDALRTDLCLLYPP 191 (297)
T ss_pred HhhccccccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhhceeeeecCh
Confidence 110 0 0134568999999999999999999998 7777654444443322 124788888887 9999999999
Q ss_pred HHHHHH
Q psy14705 303 VLVALE 308 (329)
Q Consensus 303 ~lvaL~ 308 (329)
--||+-
T Consensus 192 hiIA~a 197 (297)
T COG5333 192 HIIALA 197 (297)
T ss_pred HHHHHH
Confidence 887764
No 8
>KOG0835|consensus
Probab=99.15 E-value=1.5e-10 Score=113.01 Aligned_cols=148 Identities=21% Similarity=0.251 Sum_probs=111.1
Q ss_pred chHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcch--hhHHHHHHHH
Q psy14705 157 TLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKG--DALKTLIEKT 234 (329)
Q Consensus 157 TLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~--~~Lk~lie~i 234 (329)
|=+.+|=|=-|+..-|...- +|-|.++|++.|+|+|++.....-+.|-..+++||++||.|++|.++ ..+-.++..+
T Consensus 18 ~e~el~~LG~e~Iqea~ILL-~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L 96 (367)
T KOG0835|consen 18 TEEELRILGCELIQEAGILL-NLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYL 96 (367)
T ss_pred hHHHHHHHhHHHHHhhhHhh-cCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccccccHhHHHHHHHHH
Confidence 33455555555554433332 78999999999999999999999999999999999999999998765 2222233333
Q ss_pred HHH--------------HhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc----cc
Q psy14705 235 ENI--------------FRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----RK 294 (329)
Q Consensus 235 e~~--------------fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~ 294 (329)
+.. +.--+..++.+|..||.+|+|..++ |++.|..++|-|.. +.|.+-.+..|.++ |+
T Consensus 97 ~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~--~~~~~l~Q~~wNfmNDslRT 174 (367)
T KOG0835|consen 97 EQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQL--PPNLKLLQAAWNFMNDSLRT 174 (367)
T ss_pred HHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcC--CCchhHHHHHHHhhhhcccc
Confidence 322 2233556888999999999999998 99998887777654 33445578889887 99
Q ss_pred hhhhhhhHHHHHH
Q psy14705 295 DLFAAEFAVLVAL 307 (329)
Q Consensus 295 dl~~~e~~~lvaL 307 (329)
||+-.+.|-+||-
T Consensus 175 ~v~vry~pe~iAC 187 (367)
T KOG0835|consen 175 DVFVRYSPESIAC 187 (367)
T ss_pred ceeeecCHHHHHH
Confidence 9999998877763
No 9
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.81 E-value=1.9e-08 Score=74.10 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhh-ch
Q psy14705 164 LKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRL-NR 242 (329)
Q Consensus 164 LKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri-~r 242 (329)
...-|..++... +++..|..+|+.||||++..+.+.+.|..++|+||++||+|+++. ...++ .+....+. ++
T Consensus 5 ~~~~l~~~~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~-~~~~~----~~~~~~~~~~~ 77 (88)
T cd00043 5 PLDFLRRVAKAL--GLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEI-PPWLK----DLVHVTGYATE 77 (88)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCC-CCCHH----HHhHHhCCCCH
Confidence 344466666654 799999999999999999999999999999999999999999887 32233 33344566 88
Q ss_pred hHHHHhHHHHH
Q psy14705 243 KDLFAAEFAVL 253 (329)
Q Consensus 243 KdLL~~Ef~VL 253 (329)
.+|...|..++
T Consensus 78 ~~i~~~e~~il 88 (88)
T cd00043 78 EEILRMEKLLL 88 (88)
T ss_pred HHHHHHHHHhC
Confidence 88888887653
No 10
>KOG2496|consensus
Probab=98.71 E-value=5.7e-08 Score=94.36 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=112.8
Q ss_pred hhhHHHHhHHHHHhCCC---------------cccchHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhc
Q psy14705 137 LDLKKELNDKFKEKFPH---------------IKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALIN 201 (329)
Q Consensus 137 ~~LKkeLN~~FrekfP~---------------I~LTLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~ 201 (329)
.+...+-|++|.+.+-. -++||+|=-- ..+.+.....-+++=...+++|+-||.|++|-++|-
T Consensus 19 ~e~r~~~N~k~i~~~ee~~~~~~~~e~~v~~~ee~tl~k~~E--~~l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvm 96 (325)
T KOG2496|consen 19 AERRVDANQKAIQMLEEEAHNLDENEVFVLEAEELTLTKEEE--LSLVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVM 96 (325)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccchhccccccccccHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchh
Confidence 45678999999987542 1356665332 233444333334788889999999999999999999
Q ss_pred ccccchhHHHHHHHHhhhcCcch--hhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHH-
Q psy14705 202 KENRKLCAGACLLLSAKLNDVKG--DALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTY- 276 (329)
Q Consensus 202 K~NRKLvAaACLLLAaK~ne~k~--~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~- 276 (329)
....|.|.++|++||+|++|..- +.+-+-++ -.-+.+...+|.+||.++..|+|+|.+ |++.+.-|+--+.-
T Consensus 97 e~~pk~I~~tc~flA~Kieef~ISieqFvkn~~---~~~~k~~e~vLk~E~~llqsL~f~L~vh~PyRPleGFl~D~kt~ 173 (325)
T KOG2496|consen 97 EYSPKIIMATCFFLACKIEEFYISIEQFVKNMN---GRKWKTHEIVLKYEFLLLQSLKFSLTVHNPYRPLEGFLLDMKTR 173 (325)
T ss_pred hcChHHHHHHHHHHHhhhHhheecHHHHHhhcc---CcccccHHHHHhchHHHHHhhhhhheecCCCCchHHHHHHHHHH
Confidence 99999999999999999987532 11111111 111255667999999999999999988 88877666322211
Q ss_pred ------hhhcCC--ccchhccccccchhhhhhhHHHHHHHhcc
Q psy14705 277 ------EKFLGG--RKTENIFRLNRKDLFAAEFAVLVALEFGL 311 (329)
Q Consensus 277 ------e~~~g~--~k~e~~~r~~r~dl~~~e~~~lvaL~~~l 311 (329)
..+.+. |+.+..=++-=+|...+|.|--+||--=|
T Consensus 174 l~~~~n~d~~~~~~d~~~fl~~~lltDa~lLytPsQIALaAil 216 (325)
T KOG2496|consen 174 LPALENPDILRKHDDSKKFLDRALLTDAYLLYTPSQIALAAIL 216 (325)
T ss_pred HHhccCHHHHhhhhhHHHHHHHHHHhccceecChHHHHHHHHH
Confidence 111111 11122223335788889999888875433
No 11
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.46 E-value=6.4e-07 Score=65.42 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhh-chhHHHH
Q psy14705 169 RKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRL-NRKDLFA 247 (329)
Q Consensus 169 ~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri-~rKdLL~ 247 (329)
..++... +++.-+..+|+.+|+|......+.+.+..++|+||+++|+|+++... ..+ .+....+. ++++|..
T Consensus 4 ~~~~~~~--~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~~-~~~----~~~~~~~~~~~~~i~~ 76 (83)
T smart00385 4 RRVCKAL--NLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIPP-WTK----ELVHYTGYFTEEEILR 76 (83)
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCC-Cch----hHhHhhCCCCHHHHHH
Confidence 3444444 78888999999999999997777789999999999999999988642 222 23344566 8899999
Q ss_pred hHHHHH
Q psy14705 248 AEFAVL 253 (329)
Q Consensus 248 ~Ef~VL 253 (329)
.|..++
T Consensus 77 ~~~~il 82 (83)
T smart00385 77 MEKLLL 82 (83)
T ss_pred HHHHHh
Confidence 888775
No 12
>KOG0656|consensus
Probab=98.46 E-value=4.2e-07 Score=89.32 Aligned_cols=110 Identities=25% Similarity=0.289 Sum_probs=84.1
Q ss_pred cchHhHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccc---cchhHHHHHHHHhhhcCcchhhHHHHH
Q psy14705 156 LTLSKLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKEN---RKLCAGACLLLSAKLNDVKGDALKTLI 231 (329)
Q Consensus 156 LTLSKlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~N---RKLvAaACLLLAaK~ne~k~~~Lk~li 231 (329)
+.++-+|..=.+ |.++..+. +.+..|+-+|..||.||+--..+.|.- =.|+|+|||.||+||+|+....+-.+.
T Consensus 72 ~~~~~~R~~A~~WIl~V~~~~--~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~ 149 (335)
T KOG0656|consen 72 LILSSMRKQALDWILKVCEEY--NFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQ 149 (335)
T ss_pred ccccHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhh
Confidence 445555554433 45666655 789999999999999999999999998 899999999999999998643333321
Q ss_pred HHHHHHHhhchhHHHHhHHHHHHHhhccccC--Cccchh
Q psy14705 232 EKTENIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDIL 268 (329)
Q Consensus 232 e~ie~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~ 268 (329)
- .+..|-+..|.|..+|..||.+|+..|+. |...+.
T Consensus 150 v-~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~ 187 (335)
T KOG0656|consen 150 V-EYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFID 187 (335)
T ss_pred h-ccccccccHHHHHHHHHHHHhhccccccCCCchHHHH
Confidence 1 12345677889999999999999999995 666643
No 13
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=97.80 E-value=0.00014 Score=69.93 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=93.2
Q ss_pred HHHhCCCcccchHhHHHHHHHHHH---HHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcc
Q psy14705 147 FKEKFPHIKLTLSKLRSLKREMRK---IAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVK 223 (329)
Q Consensus 147 FrekfP~I~LTLSKlRsLKrem~~---Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k 223 (329)
.|.-++.....-++=|+|+.-+.+ ++... +|-..++..|..+|.+++-++++...++..+++||+++|++.++.+
T Consensus 105 l~~~~~~~~~~~~~er~l~~a~~~I~~~~~~L--~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~p 182 (310)
T PRK00423 105 LRKWQRRIRVSNAAERNLAFALSELDRIASQL--GLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVP 182 (310)
T ss_pred HHHHhhhcccCChHhHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCC
Confidence 344455555555565666655544 45444 6888899999999999999999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhhhcCC
Q psy14705 224 GDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGG 282 (329)
Q Consensus 224 ~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~~~g~ 282 (329)
+ .+ ++|-+..++++++|-..+..++..|+|.+.+ ..-..++.|+-....++.
T Consensus 183 r-tl----~eI~~~~~v~~k~i~~~~~~l~k~L~~~~~~--~~p~~~i~r~~~~L~L~~ 234 (310)
T PRK00423 183 R-TL----DEIAEVSRVSRKEIGRCYRFLLRELNLKLPP--TDPIDYVPRFASELGLSG 234 (310)
T ss_pred c-CH----HHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHcCCCH
Confidence 5 22 2444567899999999999999999986543 323445566655443343
No 14
>KOG0653|consensus
Probab=97.50 E-value=0.00019 Score=71.17 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=84.9
Q ss_pred HhHHHHHHHHH-HHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHH-HHhhhcCcchhhHHHHHHHHHH
Q psy14705 159 SKLRSLKREMR-KIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLL-LSAKLNDVKGDALKTLIEKTEN 236 (329)
Q Consensus 159 SKlRsLKrem~-~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLL-LAaK~ne~k~~~Lk~lie~ie~ 236 (329)
.|+|.+--+-+ ++-. .-++.+=|+-+|.-+..||.-+..|.+.-=.|++.+||| ||+|++|..-..++.+.--.+
T Consensus 155 ~~mR~iLvdwlvevh~--~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd- 231 (391)
T KOG0653|consen 155 AKMRAILVDWLVEVHE--KFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITD- 231 (391)
T ss_pred HHHHHHHHHHHHHhhh--hcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeC-
Confidence 46777666542 3332 237889999999999999999988888888999999988 999998754333433321111
Q ss_pred HHhhchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhh
Q psy14705 237 IFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEK 278 (329)
Q Consensus 237 ~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~ 278 (329)
...++++|+.+|..+|..|+|++.+|.... .++|+.+..
T Consensus 232 -~~~s~~~il~mE~~il~~L~f~l~~p~~~~--FLrr~~ka~ 270 (391)
T KOG0653|consen 232 -GAYSREEILRMEKYILNVLEFDLSVPTPLS--FLRRFLKAA 270 (391)
T ss_pred -CccchHHHHHHHHHHHhccCeeecCCchHH--HHHHHHHhh
Confidence 347999999999999999999999987643 456666543
No 15
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=97.34 E-value=0.0016 Score=56.28 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=56.8
Q ss_pred CcchHHHHHHHHHHHHHHH---H--hhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHH
Q psy14705 178 NLELLTVAQAYVYFEKLIL---L--ALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAV 252 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvL---k--g~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~V 252 (329)
.+...+.-.|.+|.+||.- . ..++..|..-+..+|+++|.||-+...-.- +..-+..+++.++|-..|...
T Consensus 66 ~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n----~~~a~v~gis~~eln~lE~~f 141 (149)
T PF08613_consen 66 QCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSN----KSWAKVGGISLKELNELEREF 141 (149)
T ss_dssp T--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---H----HHHHHHHTS-HHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccH----HHHHhhcCCCHHHHHHHHHHH
Confidence 6778889999999999999 2 457888999999999999999965433221 122345789999999999999
Q ss_pred HHHhhccc
Q psy14705 253 LVALEFGL 260 (329)
Q Consensus 253 L~aLeFsL 260 (329)
|..|+|+|
T Consensus 142 L~~l~~~L 149 (149)
T PF08613_consen 142 LKLLDYNL 149 (149)
T ss_dssp HHHTTT--
T ss_pred HHHCCCcC
Confidence 99999986
No 16
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=97.28 E-value=0.0011 Score=67.67 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=94.8
Q ss_pred chhhHHHHhHHHHHhCCCcccchHhHHHHHHHHHHHH------hhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhH
Q psy14705 136 PLDLKKELNDKFKEKFPHIKLTLSKLRSLKREMRKIA------KVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCA 209 (329)
Q Consensus 136 p~~LKkeLN~~FrekfP~I~LTLSKlRsLKrem~~Ia------~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvA 209 (329)
..+++.=+.+.++.--|..+. +.|..-++..|+.+. .+.+=++=+-|.-+|.-+-.|++=+..|.=.==+|++
T Consensus 181 ~~~Ife~l~k~e~~~lp~~~y-l~kq~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l~k~QLvg 259 (440)
T COG5024 181 ASDIFEYLLKLELIDLPNPNY-LIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVG 259 (440)
T ss_pred HHHHHHHHHHHHHHhcCcHHH-HhhcchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 556666677777777776665 555555555555421 1111135567888998877777777666666668999
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhh
Q psy14705 210 GACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEK 278 (329)
Q Consensus 210 aACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~ 278 (329)
++|||+|+|++|..-..++.+-=. -.-..++++++.+|..+|..|+|++..|--. ..++|+-..+
T Consensus 260 ~s~LfIa~K~EE~~~p~i~~l~~~--t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~--sFLRriSka~ 324 (440)
T COG5024 260 ISALFIASKYEEVNCPSIKDLVYA--TDGAFTRDDIIRAERYMLEVLDFNISWPSPM--SFLRRISKAS 324 (440)
T ss_pred HHHHHHHHhHhHhcCHHHHHHHHH--HcccccHHHHHHHHHHHhhhcccccCCCChH--HHHHHHHhhc
Confidence 999999999999877666665221 2235789999999999999999999874321 1155665433
No 17
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=96.51 E-value=0.011 Score=44.81 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=50.6
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHH
Q psy14705 170 KIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDL 245 (329)
Q Consensus 170 ~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdL 245 (329)
.++... +|...+.-.|..+|++..-+|.+.-.++.-+|+||+++|+..++.+... +++-+..+++.++|
T Consensus 3 r~~~~L--~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~~~t~-----~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 3 RICSKL--GLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGVPRTL-----KEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHT--T--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTSSSSH-----HHHHHHCTSSHHHH
T ss_pred HHHhHc--CCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCCCcCH-----HHHHHHhCCCCCcC
Confidence 344444 6777888999999999999999999999999999999999998866521 23444556665543
No 18
>KOG0655|consensus
Probab=96.15 E-value=0.022 Score=57.08 Aligned_cols=125 Identities=21% Similarity=0.327 Sum_probs=83.7
Q ss_pred HHHHHhCCCcccchHhHHHHHHHH-HHHHhhhcCCcchHHHHHHHHHHHHHHHH-hhhcccccchhHHHHHHHHhhhcCc
Q psy14705 145 DKFKEKFPHIKLTLSKLRSLKREM-RKIAKVDNSNLELLTVAQAYVYFEKLILL-ALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 145 ~~FrekfP~I~LTLSKlRsLKrem-~~Ia~~~~~~ld~~TVA~A~VYFERLvLk-g~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
..|-++||.++ -++|+|=.+- +++.... ++--=|-=+|.-||.|...- .-|.|.|--|+..+|||+|||++|.
T Consensus 131 ~~~l~qHpdlq---p~mRaILlDWlmEVCEvy--kLHRETFyLAvDy~DRyl~t~~~v~kt~lQLIGitsLFIAAK~EEI 205 (408)
T KOG0655|consen 131 KHFLEQHPDLQ---PQMRAILLDWLMEVCEVY--KLHRETFYLAVDYFDRYLETQVEVSKTNLQLIGITSLFIAAKLEEI 205 (408)
T ss_pred hHHHhhCCCCC---HHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHhhc
Confidence 46889999987 5778876663 3443322 56666888999999998754 6789999999999999999999985
Q ss_pred chhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhh
Q psy14705 223 KGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEK 278 (329)
Q Consensus 223 k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~ 278 (329)
--.-+... ..+-+ =.-+-.||+..|.-++.+|+.+|- |.- |..++.-++|-.
T Consensus 206 YpPKl~eF-AyvTD-gAcs~ddIltmE~iilkal~W~l~-PiT-ii~WL~vylQv~ 257 (408)
T KOG0655|consen 206 YPPKLIEF-AYVTD-GACSEDDILTMELIILKALKWELS-PIT-IISWLNVYLQVD 257 (408)
T ss_pred cCccccce-eeecc-CccchHHHHHHHHHHHHHhccccc-cee-hHHHHHHHHHHH
Confidence 22111000 00000 023456789999999999999885 322 233444455433
No 19
>KOG1674|consensus
Probab=88.16 E-value=1.9 Score=40.26 Aligned_cols=93 Identities=23% Similarity=0.231 Sum_probs=67.1
Q ss_pred CcchHHHHHHHHHHHHHHHH-h--------hhcccc---cchhHHHHHHHHhhhcCcc--hhhHHHHHHHHHHHHhhchh
Q psy14705 178 NLELLTVAQAYVYFEKLILL-A--------LINKEN---RKLCAGACLLLSAKLNDVK--GDALKTLIEKTENIFRLNRK 243 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLk-g--------~V~K~N---RKLvAaACLLLAaK~ne~k--~~~Lk~lie~ie~~fri~rK 243 (329)
..+..+.=.|++||+|++-+ + .++-.| | ...+|+.+|+|+-+.- .... .-.+=+++..
T Consensus 90 ~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR--~lit~v~vs~kf~~d~~y~n~~------~a~vggl~~~ 161 (218)
T KOG1674|consen 90 KCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHR--LLITTVTVSTKFLDDVYYSNAY------YAKVGGLTTD 161 (218)
T ss_pred cCCchhhhhhhhhhhhhhhhhcccccCcccccccchhHHH--HHHHHHHHHHhhccchhhhHHH------HHHhCCCChH
Confidence 67788888999999999986 1 222333 4 6788999999996532 1111 1233478888
Q ss_pred HHHHhHHHHHHHhhccccCCccchhHHHHHHHHhh
Q psy14705 244 DLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEK 278 (329)
Q Consensus 244 dLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~ 278 (329)
|+-..|+..+..++|.|.++...-.-|-..+..+-
T Consensus 162 eln~lE~~~l~~~~~~l~i~~~~~~~~~~~~~~~~ 196 (218)
T KOG1674|consen 162 ELNKLELDLLFLLDFRLIISRSEFNLYEDLLEREE 196 (218)
T ss_pred hhhhhhHHHHhhCCeEEEechhHHHHHHHHHHHHH
Confidence 88899999999999999998776666655555433
No 20
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=88.08 E-value=3.3 Score=40.22 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred hhHHHHhHHHHHhCCCcccchHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHh
Q psy14705 138 DLKKELNDKFKEKFPHIKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSA 217 (329)
Q Consensus 138 ~LKkeLN~~FrekfP~I~LTLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAa 217 (329)
.-++|+++.|+.--..+.+.+.-. +--.-|..++... ++..-+.-.|+-++++..=.++..-.++.-+||||+++|+
T Consensus 194 v~~k~i~~~~~~l~k~L~~~~~~~-~p~~~i~r~~~~L--~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~ 270 (310)
T PRK00423 194 VSRKEIGRCYRFLLRELNLKLPPT-DPIDYVPRFASEL--GLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIAS 270 (310)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 346677777665533333221111 1112233444444 4555677788889988887788899999999999999999
Q ss_pred hhcCcch
Q psy14705 218 KLNDVKG 224 (329)
Q Consensus 218 K~ne~k~ 224 (329)
+++..++
T Consensus 271 ~~~g~~~ 277 (310)
T PRK00423 271 LLLGERR 277 (310)
T ss_pred HHhCCCC
Confidence 9987553
No 21
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=82.50 E-value=12 Score=36.67 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=70.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhh
Q psy14705 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALE 257 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLe 257 (329)
+|.-...=+|..+|-+.+=+|++.-..-.-++|||++.|++.+..++. +.+|-+..+++++++-.....+...|.
T Consensus 112 ~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prt-----l~eIa~a~~V~~kei~rtyr~~~~~L~ 186 (285)
T COG1405 112 GLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRT-----LDEIAKALGVSKKEIGRTYRLLVRELK 186 (285)
T ss_pred CCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCcc-----HHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 566677788999999999999999989999999999999999886542 123334456888888888887777766
Q ss_pred ccccCCccchhHHHHHHHHhhhcC
Q psy14705 258 FGLHLPTWDILPHFQRLTYEKFLG 281 (329)
Q Consensus 258 FsL~vP~~eV~pH~~RLl~e~~~g 281 (329)
-.+ |..+-..++.|+-.+.-++
T Consensus 187 l~~--~~~~p~~yi~rf~s~L~l~ 208 (285)
T COG1405 187 LKI--PPVDPSDYIPRFASKLGLS 208 (285)
T ss_pred CCC--CCCCHHHHHHHHHHHcCCC
Confidence 544 3333345566776654333
No 22
>KOG1597|consensus
Probab=82.22 E-value=16 Score=36.44 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhh
Q psy14705 162 RSLKREMRKIAKVDN-SNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRL 240 (329)
Q Consensus 162 RsLKrem~~Ia~~~~-~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri 240 (329)
|.++.-|.+|..... .+|.-...-.|.-.|.++-=...+.-.|.--+++|||++|+-=++.++. +++|-..-++
T Consensus 102 ~~~~~a~~~I~~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq~~~pRT-----~kEI~~~anv 176 (308)
T KOG1597|consen 102 RVLKAAFKEITAMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQEDVPRT-----FKEISAVANV 176 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHhcCCCch-----HHHHHHHHcC
Confidence 556666666543221 2566656688888898887444555667788899999999998887662 2233333457
Q ss_pred chhHHHHhHHHHHHHhhccccCCccchhHHHHHHH
Q psy14705 241 NRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLT 275 (329)
Q Consensus 241 ~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl 275 (329)
++|||=..=-.++.+|+-+...-.-+...|+.|.=
T Consensus 177 ~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFC 211 (308)
T KOG1597|consen 177 SKKEIGRCVKLIGEALETSVDLISISTGDFMPRFC 211 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 77776554444555666655543223445555553
No 23
>KOG0654|consensus
Probab=73.82 E-value=2.5 Score=42.71 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=82.9
Q ss_pred cchHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHH
Q psy14705 156 LTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTE 235 (329)
Q Consensus 156 LTLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie 235 (329)
+|-|+.-+|=--+.+++.+. ..+..|..++-.+..|+.-...+.|.-=.++-.+|+++|.|+++..-..+..+..-++
T Consensus 132 ~t~smrgilvdwlvevsee~--r~~~e~l~ls~~~~drfl~~~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd 209 (359)
T KOG0654|consen 132 ITPSMRGILVDWLVEVSEEY--RLTFETLYLSVNYRDRFLSYKEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITD 209 (359)
T ss_pred CCcchhhhhhhhhhHHHHHH--HhhhhheeecHHHHHHHhccCccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhh
Confidence 66676666655566676654 6778888999999998877778888888899999999999999876555555544444
Q ss_pred HHHhhchhHHHHhHHHHHHHhhccccCCccch
Q psy14705 236 NIFRLNRKDLFAAEFAVLVALEFGLHLPTWDI 267 (329)
Q Consensus 236 ~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV 267 (329)
+. ..+.+++..|..+|.+|.|.+..|....
T Consensus 210 ~t--y~~~qv~~~~~~il~~l~~~~~~pt~~~ 239 (359)
T KOG0654|consen 210 NT--YTYWQVLRMEIDILNALTFELVRPTSKT 239 (359)
T ss_pred hh--hHHHHHHHHHHHHHHHhHHHHhCchHHH
Confidence 43 4566789999999999999998888653
No 24
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=73.46 E-value=6.9 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=36.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcC
Q psy14705 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
+.+..+-.+|+.+.|--.+....-+...-++|+||+++|.++.+
T Consensus 15 ~~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~ 58 (118)
T PF02984_consen 15 NADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILG 58 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhC
Confidence 45666778888888877788888889999999999999999954
No 25
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=53.39 E-value=12 Score=34.85 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=65.2
Q ss_pred CCCCCCcccccCcceeEE----EeCCeeEEeeccCCchhhHHHH-------hHHHHHhCC--------------Ccccch
Q psy14705 104 PNLLDDPELIAGKHRTLL----TFTSYMTSVIDYVRPLDLKKEL-------NDKFKEKFP--------------HIKLTL 158 (329)
Q Consensus 104 P~~LDdPel~~GkhRtvl----~l~sy~~Svi~yvkp~~LKkeL-------N~~FrekfP--------------~I~LTL 158 (329)
+..-|||.+..||-|++= ++++|+= |++....+..+.| |+.+...+. .+||||
T Consensus 17 ~~~~d~~~~h~gR~R~~pHv~Gnw~t~vY--i~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~s~lg~~~~lHISL 94 (239)
T PF09749_consen 17 TSVQDDPSLHGGRIRSFPHVEGNWPTHVY--IEWPPSEDQRELLEKLISKANSICPKLHSEFEPLLYSDLGSPDPLHISL 94 (239)
T ss_pred cccccCcccccCceecccccCCccceEEE--EEecCcHHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCCeEEEe
Confidence 346789999999988643 3456655 6666654444443 344443322 368999
Q ss_pred HhHHHHHHHHHHHHhhhcCCcch----HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHH
Q psy14705 159 SKLRSLKREMRKIAKVDNSNLEL----LTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKT 234 (329)
Q Consensus 159 SKlRsLKrem~~Ia~~~~~~ld~----~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~i 234 (329)
|+-=.|+.++..-.... +.. .++.-=++-|++ ++=..+..+ ...|||..+.+...+.|+.+++.+
T Consensus 95 Sr~~~lr~~~id~f~~~---lr~~l~~~~~~~F~v~f~~--~~~~~N~e~------TR~FL~l~V~~~~~~~l~~l~~~i 163 (239)
T PF09749_consen 95 SRTFPLRTHQIDPFVDS---LRQALRSSNIRPFYVSFSG--LDVYTNDEK------TRSFLALRVSEGSNNELKRLLDRI 163 (239)
T ss_pred CCCccccHHHHHHHHHH---HHHHHhhcCCceEEEEeCc--eEEEecCCC------CeEEEEEEecccccHHHHHHHHHH
Confidence 99888887775422111 111 000000111222 111222211 235677777665555588888877
Q ss_pred HHHHh
Q psy14705 235 ENIFR 239 (329)
Q Consensus 235 e~~fr 239 (329)
++..+
T Consensus 164 ~~~l~ 168 (239)
T PF09749_consen 164 NEVLK 168 (239)
T ss_pred HHHHH
Confidence 65543
No 26
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=49.51 E-value=52 Score=32.27 Aligned_cols=82 Identities=17% Similarity=0.090 Sum_probs=63.8
Q ss_pred hhHHHHhHHHHHhCCCcccchHhHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHh
Q psy14705 138 DLKKELNDKFKEKFPHIKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSA 217 (329)
Q Consensus 138 ~LKkeLN~~FrekfP~I~LTLSKlRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAa 217 (329)
.-++++.+.|+..-+++.+.... .+-..-+-.++... +|+......|.-+-++.--+|...-.++==+|+||+++|+
T Consensus 169 V~~kei~rtyr~~~~~L~l~~~~-~~p~~yi~rf~s~L--~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as 245 (285)
T COG1405 169 VSKKEIGRTYRLLVRELKLKIPP-VDPSDYIPRFASKL--GLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLAS 245 (285)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHH
Confidence 34588888888777777665543 33333444567666 6888888899999999999999999999999999999999
Q ss_pred hhcCc
Q psy14705 218 KLNDV 222 (329)
Q Consensus 218 K~ne~ 222 (329)
.+.+.
T Consensus 246 ~l~~~ 250 (285)
T COG1405 246 LLLGE 250 (285)
T ss_pred HHhCC
Confidence 99774
No 27
>KOG1675|consensus
Probab=36.35 E-value=73 Score=32.30 Aligned_cols=84 Identities=25% Similarity=0.267 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhc--ccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccCCcc
Q psy14705 188 YVYFEKLILLALIN--KENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTW 265 (329)
Q Consensus 188 ~VYFERLvLkg~V~--K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~ 265 (329)
.||+||+.-=.-++ -.|=+.+-..-.++|.|+-+.-.-.= .+.+|-...++.-|+=+.|...|..|+|++.+|-.
T Consensus 215 L~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wn---vdycqIlKd~tveDmNe~ERqfLelLqfNinvp~s 291 (343)
T KOG1675|consen 215 LVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWN---VDYCEILKDQSVDDMNALERQFLELLQFNINVPSS 291 (343)
T ss_pred HHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhccc---HHHHHHHhhccHhhHHHHHHHHHHHHhhccCccHH
Confidence 47888876332222 34444444444888999966422110 23333445678888889999999999999999988
Q ss_pred chhHHHHHH
Q psy14705 266 DILPHFQRL 274 (329)
Q Consensus 266 eV~pH~~RL 274 (329)
+..-.|--|
T Consensus 292 vYAKyYfdl 300 (343)
T KOG1675|consen 292 EYAKYYFDL 300 (343)
T ss_pred HHHHHHHHH
Confidence 765554433
No 28
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=35.10 E-value=31 Score=27.60 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=15.3
Q ss_pred hhhHHHHhHHHHHhCCCcc
Q psy14705 137 LDLKKELNDKFKEKFPHIK 155 (329)
Q Consensus 137 ~~LKkeLN~~FrekfP~I~ 155 (329)
-+.||-|+++|+.|+|...
T Consensus 12 tEyKKrL~e~l~~k~P~at 30 (68)
T PF09164_consen 12 TEYKKRLAERLRAKLPDAT 30 (68)
T ss_dssp HHHHHHHHHHHHHH-TTS-
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999874
No 29
>KOG1598|consensus
Probab=35.05 E-value=79 Score=33.81 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=42.5
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcC
Q psy14705 167 EMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 167 em~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
.+..++... ++.. -+=+|.-||..++=+|+..-.+.-++.++||++++-.+-
T Consensus 73 ~i~~~~~~l--~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR~e~ 124 (521)
T KOG1598|consen 73 LIEELTERL--NLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCRLEK 124 (521)
T ss_pred HHHHHHHhc--Ccch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhhC
Confidence 344444444 5666 777899999999999999999999999999999997654
No 30
>KOG0834|consensus
Probab=34.52 E-value=23 Score=35.39 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCc
Q psy14705 182 LTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 182 ~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
-.+-+||+|.-..+.-.+.-+.-..-||.||+.||+|+...
T Consensus 171 ~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~ 211 (323)
T KOG0834|consen 171 PLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGV 211 (323)
T ss_pred cHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCC
Confidence 35566777776666656667778899999999999999754
No 31
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=23.10 E-value=81 Score=27.47 Aligned_cols=27 Identities=33% Similarity=0.689 Sum_probs=21.2
Q ss_pred HHhHHHHHhCCCcc-cchHhHHHHHHHH
Q psy14705 142 ELNDKFKEKFPHIK-LTLSKLRSLKREM 168 (329)
Q Consensus 142 eLN~~FrekfP~I~-LTLSKlRsLKrem 168 (329)
-|=+.|+++||||. ++=..|++|=..+
T Consensus 63 ~la~~~k~rfpW~~~~~k~ei~~lm~~l 90 (112)
T PF03139_consen 63 CLAEAFKERFPWINEMSKDEIKSLMQGL 90 (112)
T ss_pred HHHHHHHHcCcHHHHCCHHHHHHHHHHH
Confidence 46688999999995 8888888775544
No 32
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=21.91 E-value=33 Score=30.21 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=10.0
Q ss_pred cccchhhhhhhc
Q psy14705 317 DILPHFQRLTYE 328 (329)
Q Consensus 317 ~~~ph~~rl~~~ 328 (329)
||+|||+++.+.
T Consensus 106 EVVP~YR~~Ae~ 117 (123)
T TIGR02267 106 EVVPFYRELAQV 117 (123)
T ss_pred hhhHHHHHHHHH
Confidence 689999998764
No 33
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=21.70 E-value=93 Score=26.99 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=20.8
Q ss_pred HHhHHHHHhCCCcc-cchHhHHHHHHHH
Q psy14705 142 ELNDKFKEKFPHIK-LTLSKLRSLKREM 168 (329)
Q Consensus 142 eLN~~FrekfP~I~-LTLSKlRsLKrem 168 (329)
-|=+.|+++||||. ++=..|++|=..+
T Consensus 60 ~la~~~k~rfpW~~~~~kdei~~l~~~l 87 (109)
T TIGR02930 60 NLASDIKERFPWISELDKDQILELVESV 87 (109)
T ss_pred HHHHHHHHhCcHHHhCCHHHHHHHHHHH
Confidence 46688999999995 8888887764443
No 34
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=21.54 E-value=94 Score=26.95 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=21.0
Q ss_pred HHhHHHHHhCCCcc-cchHhHHHHHHHH
Q psy14705 142 ELNDKFKEKFPHIK-LTLSKLRSLKREM 168 (329)
Q Consensus 142 eLN~~FrekfP~I~-LTLSKlRsLKrem 168 (329)
-|=+.|+++||||. ++=..|++|=..+
T Consensus 60 ~la~~~k~rfpW~~~~~kdei~~l~~~l 87 (109)
T TIGR02929 60 TLAGAYKRRFPWLEDMTKDEIKTLMQAL 87 (109)
T ss_pred HHHHHHHHhCcHHHhCCHHHHHHHHHHH
Confidence 46688999999995 8888887765444
No 35
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=20.86 E-value=2.8e+02 Score=24.70 Aligned_cols=84 Identities=10% Similarity=0.079 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHH-HHHHhhchhHHHHhHHHHHHHhh
Q psy14705 179 LELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKT-ENIFRLNRKDLFAAEFAVLVALE 257 (329)
Q Consensus 179 ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~i-e~~fri~rKdLL~~Ef~VL~aLe 257 (329)
-|-..+|+.++||.|.-+... ..||- -.-++|.||--|+|.....-...+-.+ ...|+-.....+..=...+..++
T Consensus 28 sDKYLLAmV~~YF~Ragl~~~--~Y~ri-~FFlALYLAndmEED~~~~K~~If~f~~G~~w~~~~~~F~klr~~~~~~m~ 104 (131)
T PF11357_consen 28 SDKYLLAMVIAYFSRAGLFSW--QYQRI-HFFLALYLANDMEEDDEEPKYEIFPFLYGKNWRSQIPQFHKLRDQFWRRMD 104 (131)
T ss_pred hhHHHHHHHHHHHHhcccchh--hcchH-HHHHHHHHhhHHHhccchHHHHHHHHHHCcchHHHhHHHHHHHHHHHHHcC
Confidence 366799999999999876533 23433 344679999999775322211221111 11122223333333444556666
Q ss_pred ccccCCcc
Q psy14705 258 FGLHLPTW 265 (329)
Q Consensus 258 FsL~vP~~ 265 (329)
+..-|+.+
T Consensus 105 ~Ra~Vsre 112 (131)
T PF11357_consen 105 WRAWVSRE 112 (131)
T ss_pred CceeeCHH
Confidence 76666544
Done!