Query psy14705
Match_columns 329
No_of_seqs 95 out of 115
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 18:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jkw_A Cyclin H; cell cycle, c 99.6 2E-15 7E-20 142.4 8.9 174 139-316 22-231 (323)
2 3rgf_B Cyclin-C; protein kinas 99.5 7.2E-14 2.5E-18 129.3 12.1 146 156-307 34-201 (285)
3 1zp2_A RNA polymerase II holoe 99.5 4.4E-14 1.5E-18 126.3 9.4 136 165-307 32-178 (235)
4 2ivx_A Cyclin-T2; transcriptio 99.5 1.5E-13 5.2E-18 123.9 9.1 133 168-307 38-191 (257)
5 2pk2_A Cyclin-T1, protein TAT; 99.4 3.2E-13 1.1E-17 129.5 7.6 133 168-307 45-198 (358)
6 2i53_A Cyclin K; cell cycle, t 99.3 4.4E-12 1.5E-16 113.9 10.8 147 166-319 46-219 (258)
7 1c9b_A General transcription f 99.3 5.9E-12 2E-16 110.1 9.0 136 161-307 5-146 (207)
8 3g33_B CCND3 protein; Ser/Thr 99.2 7E-11 2.4E-15 110.7 9.2 101 160-264 69-170 (306)
9 1g3n_C V-cyclin; cyclin-depend 99.1 1.5E-10 5.2E-15 104.9 8.4 101 160-264 49-150 (257)
10 2cch_B Cyclin A2, cyclin-A; co 99.1 3.8E-11 1.3E-15 108.9 4.2 139 129-276 9-148 (260)
11 2b9r_A Human cyclin B1; cell c 99.1 1.6E-10 5.5E-15 105.7 7.9 104 156-264 33-137 (269)
12 2w96_A G1/S-specific cyclin-D1 99.1 1.9E-10 6.3E-15 105.0 7.7 102 159-264 54-156 (271)
13 1w98_B Cyclin E, G1/S-specific 99.0 6.1E-10 2.1E-14 102.9 9.1 101 160-264 48-150 (283)
14 2f2c_A Cyclin homolog, V-cycli 99.0 2.3E-10 7.9E-15 103.5 6.0 101 160-264 50-151 (254)
15 1f5q_B Gamma herpesvirus cycli 99.0 1.1E-09 3.6E-14 100.6 8.2 102 160-265 47-149 (252)
16 1ais_B TFB TFIIB, protein (tra 98.9 4.8E-09 1.7E-13 91.0 10.2 138 161-305 9-150 (200)
17 3k7a_M Transcription initiatio 98.6 3.5E-08 1.2E-12 93.9 5.1 134 162-306 127-278 (345)
18 4bbr_M Transcription initiatio 97.8 4.4E-05 1.5E-09 73.1 7.6 137 162-305 127-277 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 96.9 0.0041 1.4E-07 59.3 9.9 96 168-269 81-179 (293)
20 1ais_B TFB TFIIB, protein (tra 94.6 0.16 5.6E-06 43.5 9.0 76 178-258 120-195 (200)
21 1c9b_A General transcription f 91.8 0.7 2.4E-05 39.8 8.7 75 178-257 114-188 (207)
22 1zp2_A RNA polymerase II holoe 75.1 6.8 0.00023 34.4 6.9 45 178-222 146-190 (235)
23 3rgf_B Cyclin-C; protein kinas 69.9 8.9 0.00031 35.0 6.6 44 179-222 170-213 (285)
24 2i53_A Cyclin K; cell cycle, t 60.9 14 0.00047 32.6 5.8 39 183-221 172-210 (258)
25 3g33_B CCND3 protein; Ser/Thr 59.2 26 0.00089 32.4 7.6 76 185-260 194-269 (306)
26 2ivx_A Cyclin-T2; transcriptio 50.2 23 0.0008 31.2 5.5 43 179-221 159-202 (257)
27 2f2c_A Cyclin homolog, V-cycli 44.1 50 0.0017 29.2 6.7 62 186-247 176-237 (254)
28 3k7a_M Transcription initiatio 42.9 5.1 0.00017 37.8 0.0 44 179-222 248-291 (345)
29 3k6t_A Female germline-specifi 40.3 10 0.00035 28.5 1.3 25 266-302 25-51 (60)
30 2b9r_A Human cyclin B1; cell c 36.6 39 0.0013 30.3 4.8 44 178-221 150-193 (269)
31 2pk2_A Cyclin-T1, protein TAT; 32.9 27 0.00092 33.2 3.2 42 180-221 167-209 (358)
32 2w96_A G1/S-specific cyclin-D1 32.8 64 0.0022 28.8 5.6 35 186-220 181-215 (271)
33 4bbr_M Transcription initiatio 32.2 9.9 0.00034 36.1 0.1 44 179-222 248-291 (345)
34 1g3n_C V-cyclin; cyclin-depend 31.0 87 0.003 27.6 6.1 36 186-221 175-210 (257)
35 1jkw_A Cyclin H; cell cycle, c 30.6 1E+02 0.0035 28.5 6.8 40 183-222 187-226 (323)
36 2cch_B Cyclin A2, cyclin-A; co 20.6 1.2E+02 0.004 26.8 4.9 39 183-221 157-196 (260)
No 1
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.59 E-value=2e-15 Score=142.41 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=124.1
Q ss_pred hHHHHhHHHHHhCC--------Cc-ccchHhHHHHHHHHHH----HHhhhcCC--cchHHHHHHHHHHHHHHHHhhhccc
Q psy14705 139 LKKELNDKFKEKFP--------HI-KLTLSKLRSLKREMRK----IAKVDNSN--LELLTVAQAYVYFEKLILLALINKE 203 (329)
Q Consensus 139 LKkeLN~~FrekfP--------~I-~LTLSKlRsLKrem~~----Ia~~~~~~--ld~~TVA~A~VYFERLvLkg~V~K~ 203 (329)
++.+.|+.|+++++ .+ -||..+-+.+++.... ++... + +-+.|+++|.+||.|++.++++.+.
T Consensus 22 ~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l--~~~Lp~~t~~tA~~~~~RF~~~~s~~~~ 99 (323)
T 1jkw_A 22 LRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVF--KPAMPRSVVGTACMYFKRFYLNNSVMEY 99 (323)
T ss_dssp HHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHC--TTTCCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhhhCChhhc
Confidence 46889999999983 12 2899999999987654 44433 5 8899999999999999999999999
Q ss_pred ccchhHHHHHHHHhhhcCcchhhHHHHHHHHH---HHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhh
Q psy14705 204 NRKLCAGACLLLSAKLNDVKGDALKTLIEKTE---NIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEK 278 (329)
Q Consensus 204 NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie---~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~ 278 (329)
+..++|+|||+||+|++|.+. .++.++..+. .....++++|+.+|+.||.+|+|+|.+ |+..+...++.+...
T Consensus 100 ~~~lva~acLfLA~K~EE~~~-~l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~- 177 (323)
T 1jkw_A 100 HPRIIMLTCAFLACKVDEFNV-SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTR- 177 (323)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC-CHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhhhcCCC-CHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHH-
Confidence 999999999999999999864 2344332221 012346899999999999999999997 666654444433211
Q ss_pred hcCC---ccc-hhccccc----cchhhhhhhHHHHHHH--------hcccCCcc
Q psy14705 279 FLGG---RKT-ENIFRLN----RKDLFAAEFAVLVALE--------FGLHLPTW 316 (329)
Q Consensus 279 ~~g~---~k~-e~~~r~~----r~dl~~~e~~~lvaL~--------~~l~~p~~ 316 (329)
..|. +.+ .-.|.+. +.+++..+.|-.||+- .|..+|.|
T Consensus 178 ~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w 231 (323)
T 1jkw_A 178 YPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESY 231 (323)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTH
T ss_pred hccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHH
Confidence 0111 111 2233333 7888888888777754 44556765
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.51 E-value=7.2e-14 Score=129.26 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=104.9
Q ss_pred cchHhHHHHHHHHH----HHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHH
Q psy14705 156 LTLSKLRSLKREMR----KIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLI 231 (329)
Q Consensus 156 LTLSKlRsLKrem~----~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~li 231 (329)
+|....++++.-+. +++... ++-+.|+++|.+||.|++.++.+.+.+..++|+|||+||+|++|+....++.++
T Consensus 34 l~~~~e~~~R~~~~~~I~~v~~~l--~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~ 111 (285)
T 3rgf_B 34 LSEEEYWKLQIFFTNVIQALGEHL--KLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLI 111 (285)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 66666666665543 455554 799999999999999999999999999999999999999999998653333332
Q ss_pred HHHH------------HHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc----c
Q psy14705 232 EKTE------------NIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----R 293 (329)
Q Consensus 232 e~ie------------~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r 293 (329)
.... +.|...+++|+.+|+.||..|+|+|.+ |+..+...++.+-.. .+-..-.|.+. +
T Consensus 112 ~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~----~~~~~~A~~~l~~sl~ 187 (285)
T 3rgf_B 112 AAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE----DMLLPLAWRIVNDTYR 187 (285)
T ss_dssp HHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHc
Confidence 2211 223467899999999999999999987 555554444333211 11122333333 7
Q ss_pred chhhhhhhHHHHHH
Q psy14705 294 KDLFAAEFAVLVAL 307 (329)
Q Consensus 294 ~dl~~~e~~~lvaL 307 (329)
.+++.-+.|-.||.
T Consensus 188 t~~~l~~~Ps~IAa 201 (285)
T 3rgf_B 188 TDLCLLYPPFMIAL 201 (285)
T ss_dssp SSHHHHSCHHHHHH
T ss_pred cChhhccCHHHHHH
Confidence 88888888887774
No 3
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.50 E-value=4.4e-14 Score=126.30 Aligned_cols=136 Identities=15% Similarity=0.237 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcc-cccchhHHHHHHHHhhhcCcchhhHHHHHHHHHH----HHh
Q psy14705 165 KREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINK-ENRKLCAGACLLLSAKLNDVKGDALKTLIEKTEN----IFR 239 (329)
Q Consensus 165 Krem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K-~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~----~fr 239 (329)
-..|.+++... ++.+.|+++|.+||.|++.++.+.+ .+..++|+|||+||+|++|++. .++.++..... .+.
T Consensus 32 ~~~i~~v~~~l--~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~-~l~d~~~~~~~~~~~~~~ 108 (235)
T 1zp2_A 32 WKVVQTFGDRL--RLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV-HIRTICNEANDLWSLKVK 108 (235)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcc-cHHHHHHHHHHHccchhh
Confidence 34466677665 7999999999999999999999999 9999999999999999999765 34555443322 246
Q ss_pred hchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc----cchhhhhhhHHHHHH
Q psy14705 240 LNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKDLFAAEFAVLVAL 307 (329)
Q Consensus 240 i~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~dl~~~e~~~lvaL 307 (329)
.++++|+.+|+.||.+|+|+|.+ |+..+ .|++...-...+-.+..|.+. +.+++.-+.|-.||+
T Consensus 109 ~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l----~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 109 LSRSNISEIEFEIISVLDAFLIVHHPYTSL----EQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCCCCTHHHH----HHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcEEecChHHHH----HHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 88999999999999999999987 55554 344433211111223344443 788888888877765
No 4
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.45 E-value=1.5e-13 Score=123.89 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=95.9
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHH--------------
Q psy14705 168 MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEK-------------- 233 (329)
Q Consensus 168 m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~-------------- 233 (329)
|.+++... ++.+.|+++|.+||+|++.++.+.+.+..++|+|||+||+|++|.+. .++.++..
T Consensus 38 i~~v~~~l--~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~-~l~d~~~~~~~~~~~~~~~~~~ 114 (257)
T 2ivx_A 38 IQEMGQRL--NVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQAR-KLEHVIKVAHACLHPLEPLLDT 114 (257)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHCTTSCCCCT
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCc-CHHHHHHHHHHHhccCCCCCCc
Confidence 45566655 79999999999999999999999999999999999999999999854 23333221
Q ss_pred HHHHHhhchhHHHHhHHHHHHHhhccccCC--ccchhHHHHHHHHhhhcCCccchhccccc-----cchhhhhhhHHHHH
Q psy14705 234 TENIFRLNRKDLFAAEFAVLVALEFGLHLP--TWDILPHFQRLTYEKFLGGRKTENIFRLN-----RKDLFAAEFAVLVA 306 (329)
Q Consensus 234 ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP--~~eV~pH~~RLl~e~~~g~~k~e~~~r~~-----r~dl~~~e~~~lva 306 (329)
.++.|...+++|+.+|+.||.+|+|+|.+| +..+ .|++.....+.+-.+-.|.+. ..+++.-+.|-.||
T Consensus 115 ~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl----~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IA 190 (257)
T 2ivx_A 115 KCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV----VKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIA 190 (257)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH----HHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH----HHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHH
Confidence 135566679999999999999999999974 3443 334332211111223345443 36777777776666
Q ss_pred H
Q psy14705 307 L 307 (329)
Q Consensus 307 L 307 (329)
+
T Consensus 191 a 191 (257)
T 2ivx_A 191 C 191 (257)
T ss_dssp H
T ss_pred H
Confidence 5
No 5
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.39 E-value=3.2e-13 Score=129.53 Aligned_cols=133 Identities=19% Similarity=0.252 Sum_probs=96.7
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHH--------------
Q psy14705 168 MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEK-------------- 233 (329)
Q Consensus 168 m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~-------------- 233 (329)
|.+++... ++.+.|+++|.+||+|++.++.+.+.+..++|+|||+||+|++|.+.. ++.++..
T Consensus 45 I~ev~~~l--~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~-l~d~v~v~~~~~~~~~~~~~~ 121 (358)
T 2pk2_A 45 LQDMGQRL--NVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKK-LEHVIKVAHTCLHPQESLPDT 121 (358)
T ss_dssp HHHHHTTT--TCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCC-HHHHHTTHHHHHCSSSCCCCT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCC-HHHHHHHHHHHhccccccccc
Confidence 44566554 799999999999999999999999999999999999999999998542 3333221
Q ss_pred HHHHHhhchhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc-----cchhhhhhhHHHHH
Q psy14705 234 TENIFRLNRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN-----RKDLFAAEFAVLVA 306 (329)
Q Consensus 234 ie~~fri~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~-----r~dl~~~e~~~lva 306 (329)
.++.|...+++|+.+|+.||.+|+|+|.+ |+..|. |++.......+-.+-.|.+. ..|++.-+.|-.||
T Consensus 122 ~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~----~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IA 197 (358)
T 2pk2_A 122 RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVV----KCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVA 197 (358)
T ss_dssp TSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHH----HHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHT
T ss_pred cchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHH----HHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHH
Confidence 14566677999999999999999999997 555543 33332211111223345443 46777778887777
Q ss_pred H
Q psy14705 307 L 307 (329)
Q Consensus 307 L 307 (329)
+
T Consensus 198 a 198 (358)
T 2pk2_A 198 C 198 (358)
T ss_dssp T
T ss_pred H
Confidence 5
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.34 E-value=4.4e-12 Score=113.91 Aligned_cols=147 Identities=16% Similarity=0.267 Sum_probs=101.4
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHH-----HHHHh-
Q psy14705 166 REMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKT-----ENIFR- 239 (329)
Q Consensus 166 rem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~i-----e~~fr- 239 (329)
..|.+++... ++.+.|+++|.+||+|++.++.+.+.+..++|+|||+||+|++|.+.. ++.++... ++.|.
T Consensus 46 ~~i~~v~~~l--~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~-l~d~~~~~~~~~~~~~~~~ 122 (258)
T 2i53_A 46 RFIFDVGTRL--GLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKK-CKDIIKTARSLLNDVQFGQ 122 (258)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHSCHHHHGG
T ss_pred HHHHHHHHHc--CCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccccccc-HHHHHHHHHHHhchhhhhh
Confidence 3455676655 799999999999999999999999999999999999999999997542 44443311 23331
Q ss_pred ---hchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhhhcCCcc------chhccccc----cchhhhhhhHHHHH
Q psy14705 240 ---LNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGGRK------TENIFRLN----RKDLFAAEFAVLVA 306 (329)
Q Consensus 240 ---i~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~~~g~~k------~e~~~r~~----r~dl~~~e~~~lva 306 (329)
-++++|+..|+.||.+|+|+|.+|.-. .++.|++... +.+. ..-.|.+. +.+++.-+.|-.||
T Consensus 123 ~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~--~fl~~~~~~l--~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IA 198 (258)
T 2i53_A 123 FGDDPKEEVMVLERILLQTIKFDLQVEHPY--QFLLKYAKQL--KGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIA 198 (258)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTTCCCCCCHH--HHHHHHHHTB--CSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHCCCceeccChH--HHHHHHHHHh--CCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHH
Confidence 258899999999999999999974321 1233344322 2211 12233322 66777777776665
Q ss_pred H--------HhcccCCccccc
Q psy14705 307 L--------EFGLHLPTWDIL 319 (329)
Q Consensus 307 L--------~~~l~~p~~~~~ 319 (329)
+ ..|..+|.|..-
T Consensus 199 aAai~lA~~~~~~~~~~~~~~ 219 (258)
T 2i53_A 199 VAVMYLAGRLCKFEIQEWTSK 219 (258)
T ss_dssp HHHHHHHHHHHTCCGGGGBSS
T ss_pred HHHHHHHHHHhCCCCCccccC
Confidence 4 345667777653
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.30 E-value=5.9e-12 Score=110.14 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhh
Q psy14705 161 LRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRL 240 (329)
Q Consensus 161 lRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri 240 (329)
|+.-...+..++... ++-+.|+++|.+||.|++.++++...++.++|+|||++|+|+++.+. .++. +-+..++
T Consensus 5 l~~a~~~I~~~~~~L--~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~-~l~d----i~~~~~~ 77 (207)
T 1c9b_A 5 MMNAFKEITTMADRI--NLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPR-TFKE----ICAVSRI 77 (207)
T ss_dssp HHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCC-CHHH----HHHTSSS
T ss_pred HHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCC-CHHH----HHHHHCC
Confidence 344445566677766 78899999999999999999999999999999999999999999864 2333 3345679
Q ss_pred chhHHHHhHHHHHHHhhccccC--CccchhHHHHHHHHhhhcCCccchhccccc----cchhhhhhhHHHHHH
Q psy14705 241 NRKDLFAAEFAVLVALEFGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKDLFAAEFAVLVAL 307 (329)
Q Consensus 241 ~rKdLL~~Ef~VL~aLeFsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~dl~~~e~~~lvaL 307 (329)
+++++...|+.++..|+|++.+ |+..| .|+....-++.+-.+-.|.+. +++++.-+.|..||.
T Consensus 78 ~~~~i~~~~~~ll~~L~~~l~~~~p~~~l----~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAa 146 (207)
T 1c9b_A 78 SKKEIGRCFKLILKALETSVDLITTGDFM----SRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 146 (207)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCTHHHH----HHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCcCCHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHH
Confidence 9999999999999999999876 44444 455543322222223334433 677777777766553
No 8
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.16 E-value=7e-11 Score=110.73 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=80.7
Q ss_pred hHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHH
Q psy14705 160 KLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIF 238 (329)
Q Consensus 160 KlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~f 238 (329)
++|.+=-+ |.+++... ++.+.|+++|.+||.|++.+..+.+.+..|+|++||+||+|++|..-..++.+....+ .
T Consensus 69 ~~R~~lvdwl~ev~~~~--~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~--~ 144 (306)
T 3g33_B 69 HMRKMLAYWMLEVCEEQ--RCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD--H 144 (306)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHh--CCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc--c
Confidence 56655444 34566554 8999999999999999999999999999999999999999999864433444433222 2
Q ss_pred hhchhHHHHhHHHHHHHhhccccCCc
Q psy14705 239 RLNRKDLFAAEFAVLVALEFGLHLPT 264 (329)
Q Consensus 239 ri~rKdLL~~Ef~VL~aLeFsL~vP~ 264 (329)
..++++|+.+|+.||..|+|+|.+|.
T Consensus 145 ~~~~~~i~~mE~~IL~~L~f~l~~~t 170 (306)
T 3g33_B 145 AVSPRQLRDWEVLVLGKLKWDLAAVI 170 (306)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHcCCccCCCC
Confidence 46899999999999999999999843
No 9
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.10 E-value=1.5e-10 Score=104.86 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=80.6
Q ss_pred hHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHH
Q psy14705 160 KLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIF 238 (329)
Q Consensus 160 KlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~f 238 (329)
++|.+=-+ |.+++... ++.+-|+++|..||.|++.++.|.+.+..|+|+|||+||+|++|..-..++.+..-.+ .
T Consensus 49 ~~R~~lvdwl~ev~~~~--~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~--~ 124 (257)
T 1g3n_C 49 HMRKLLGTWMFSVCQEY--NLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA--D 124 (257)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC--C
Confidence 46654443 44566544 8999999999999999999999999999999999999999999864333444433222 2
Q ss_pred hhchhHHHHhHHHHHHHhhccccCCc
Q psy14705 239 RLNRKDLFAAEFAVLVALEFGLHLPT 264 (329)
Q Consensus 239 ri~rKdLL~~Ef~VL~aLeFsL~vP~ 264 (329)
..++++|+.+|+.||.+|+|+|.+|.
T Consensus 125 ~~~~~~i~~mE~~iL~~L~~~l~~~t 150 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLAWRTEAVL 150 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCC
Confidence 46899999999999999999999754
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.09 E-value=3.8e-11 Score=108.94 Aligned_cols=139 Identities=19% Similarity=0.315 Sum_probs=96.1
Q ss_pred EeeccCCchhhHHHHhHHHHHhCCCcccchHhHHHH-HHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccch
Q psy14705 129 SVIDYVRPLDLKKELNDKFKEKFPHIKLTLSKLRSL-KREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKL 207 (329)
Q Consensus 129 Svi~yvkp~~LKkeLN~~FrekfP~I~LTLSKlRsL-Krem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKL 207 (329)
.|+.|.+..+.+.-.|..|-++.|+| |. ++|.+ =.=|.+++... ++.+.|+++|..||+|++.+..+.+.+..|
T Consensus 9 di~~~l~~~E~~~~p~~~y~~~q~~i--~~-~~R~~lvdwl~~v~~~~--~l~~~tl~lAv~~lDRfls~~~v~~~~lql 83 (260)
T 2cch_B 9 DIHTYLREMEVKCKPKVGYMKKQPDI--TN-SMRAILVDWLVEVGEEY--KLQNETLHLAVNYIDRFLSSMSVLRGKLQL 83 (260)
T ss_dssp HHHHHHHHHHHHTCCCTTGGGGCSSC--CH-HHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCchhhhcCCCC--CH-HHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhccCCCCHHHHhH
Confidence 33344443333333334454555544 43 34443 33355666554 899999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccccCCccchhHHHHHHHH
Q psy14705 208 CAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTY 276 (329)
Q Consensus 208 vAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~ 276 (329)
+|+|||+||+|++|..-..++.+..-.+. ..++++|+.+|+.||..|+|++.+|.- ...+.|++.
T Consensus 84 v~~acl~iA~K~ee~~~~~~~d~~~i~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp--~~fl~~~~~ 148 (260)
T 2cch_B 84 VGTAAMLLASKFEEIYPPEVAEFVYITDD--TYTKKQVLRMEHLVLKVLTFDLAAPTV--NQFLTQYFL 148 (260)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHTTS--SSCHHHHHHHHHHHHHHTTTCCCCCCH--HHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHcC--CcCHHHHHHHHHHHHHHcCCccCCCCH--HHHHHHHHH
Confidence 99999999999999733334444332222 468999999999999999999987543 223344554
No 11
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.08 E-value=1.6e-10 Score=105.67 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=83.2
Q ss_pred cchHhHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHH
Q psy14705 156 LTLSKLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKT 234 (329)
Q Consensus 156 LTLSKlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~i 234 (329)
+|. ++|.+=-+ |.+++... ++.+.|+++|..||.|++.+..+.+.+..|+++|||+||+|++|.....++.+..-.
T Consensus 33 i~~-~~R~~lv~wl~~v~~~~--~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~ 109 (269)
T 2b9r_A 33 VTG-NMRAILIDWLVQVQMKF--RLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVT 109 (269)
T ss_dssp SCH-HHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred CCH-HHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHh
Confidence 443 45655444 66676654 799999999999999999999999999999999999999999997433444444322
Q ss_pred HHHHhhchhHHHHhHHHHHHHhhccccCCc
Q psy14705 235 ENIFRLNRKDLFAAEFAVLVALEFGLHLPT 264 (329)
Q Consensus 235 e~~fri~rKdLL~~Ef~VL~aLeFsL~vP~ 264 (329)
+. ..++++|+.+|+.||..|+|+|.+|.
T Consensus 110 ~~--~~~~~eI~~mE~~IL~~L~f~l~~~t 137 (269)
T 2b9r_A 110 DN--TYTKHQIRQMEMKILRALNFGLGRPL 137 (269)
T ss_dssp CS--SSCHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCccCCCC
Confidence 22 46899999999999999999998754
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.07 E-value=1.9e-10 Score=105.04 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=82.5
Q ss_pred HhHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHH
Q psy14705 159 SKLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENI 237 (329)
Q Consensus 159 SKlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~ 237 (329)
.++|.+=-+ |.+++... ++...|+++|..||.|++.+..+.+.+..|+|+|||+||+|++|..--.++.+..-.+
T Consensus 54 ~~~R~~lv~wl~~v~~~~--~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~-- 129 (271)
T 2w96_A 54 PSMRKIVATWMLEVCEEQ--KCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTD-- 129 (271)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHH--CCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc--
Confidence 457766555 66777654 7889999999999999999999999999999999999999999973223444332222
Q ss_pred HhhchhHHHHhHHHHHHHhhccccCCc
Q psy14705 238 FRLNRKDLFAAEFAVLVALEFGLHLPT 264 (329)
Q Consensus 238 fri~rKdLL~~Ef~VL~aLeFsL~vP~ 264 (329)
...++++|+.+|+.||.+|+|+|.+|.
T Consensus 130 ~~~~~~eI~~mE~~IL~~L~~~l~~~t 156 (271)
T 2w96_A 130 NSIRPEELLQMELLLVNKLKWNLAAMT 156 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCCC
Confidence 357899999999999999999999754
No 13
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.02 E-value=6.1e-10 Score=102.89 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=81.7
Q ss_pred hHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHH-hhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHH
Q psy14705 160 KLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILL-ALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENI 237 (329)
Q Consensus 160 KlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLk-g~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~ 237 (329)
++|++=-+ |.+++... ++...|+++|..||.|++-+ ..+.+.+..|+++|||+||+|++|..-..++.+..-.+
T Consensus 48 ~~R~~lv~wl~~v~~~~--~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~-- 123 (283)
T 1w98_B 48 KMRAILLDWLMEVCEVY--KLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD-- 123 (283)
T ss_dssp HHHHHHHHHHHHHHHHT--TCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc--
Confidence 56665555 77777654 79999999999999999998 68999999999999999999999874333444433222
Q ss_pred HhhchhHHHHhHHHHHHHhhccccCCc
Q psy14705 238 FRLNRKDLFAAEFAVLVALEFGLHLPT 264 (329)
Q Consensus 238 fri~rKdLL~~Ef~VL~aLeFsL~vP~ 264 (329)
...++++|+.+|+.||..|+|+|.+|.
T Consensus 124 ~~~~~~ei~~mE~~IL~~L~~~l~~~t 150 (283)
T 1w98_B 124 GACSGDEILTMELMIMKALKWRLSPLT 150 (283)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCcCCCCC
Confidence 246899999999999999999999754
No 14
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.02 E-value=2.3e-10 Score=103.50 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=78.5
Q ss_pred hHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHH
Q psy14705 160 KLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIF 238 (329)
Q Consensus 160 KlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~f 238 (329)
++|++=-+ |.+++... ++.+-|+++|..||.|++-++.|.+.+..|+|+|||+||+|++|..-..++.+..-.+ .
T Consensus 50 ~~R~~lvdwl~~v~~~~--~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~--~ 125 (254)
T 2f2c_A 50 DNRTILLTWMHLLCESF--ELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC--D 125 (254)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC----
T ss_pred HHHHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhC--C
Confidence 46664333 44566544 7999999999999999999999999999999999999999999863333443322112 2
Q ss_pred hhchhHHHHhHHHHHHHhhccccCCc
Q psy14705 239 RLNRKDLFAAEFAVLVALEFGLHLPT 264 (329)
Q Consensus 239 ri~rKdLL~~Ef~VL~aLeFsL~vP~ 264 (329)
..++++|+.+|+.||.+|+|+|.+|.
T Consensus 126 ~~~~~~i~~mE~~IL~~L~~~l~~~t 151 (254)
T 2f2c_A 126 CFTNLELINQEKDILEALKWDTEAVL 151 (254)
T ss_dssp -CCHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCC
Confidence 46899999999999999999999743
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.97 E-value=1.1e-09 Score=100.59 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=81.7
Q ss_pred hHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHH
Q psy14705 160 KLRSLKRE-MRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIF 238 (329)
Q Consensus 160 KlRsLKre-m~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~f 238 (329)
++|++=-+ |.+++... ++.+-|+++|..||.|++-+..+.+.+-.|++.+||+||+|++|..--.++.+..-.+ .
T Consensus 47 ~~R~~lvdWl~ev~~~~--~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~--~ 122 (252)
T 1f5q_B 47 QYRKVLTTWMFCVCKDL--RQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCG--G 122 (252)
T ss_dssp SHHHHHHHHHHHHHHHT--TCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC--C
Confidence 45554333 44566544 8999999999999999999999999999999999999999999974434444443222 3
Q ss_pred hhchhHHHHhHHHHHHHhhccccCCcc
Q psy14705 239 RLNRKDLFAAEFAVLVALEFGLHLPTW 265 (329)
Q Consensus 239 ri~rKdLL~~Ef~VL~aLeFsL~vP~~ 265 (329)
..++++|+.+|+.||.+|+|+|.+|.-
T Consensus 123 ~yt~~~i~~mE~~IL~~L~w~l~~pTp 149 (252)
T 1f5q_B 123 ATTADKLLTLEVKSLDTLSWVADRCLS 149 (252)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCCCH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCH
Confidence 578999999999999999999998553
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.92 E-value=4.8e-09 Score=91.01 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhh
Q psy14705 161 LRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRL 240 (329)
Q Consensus 161 lRsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri 240 (329)
|+.-...+..++... ++-+.++.+|.+||.|++-+|.+...+...+|+||+++|+|.++.+.. + +++-+.+++
T Consensus 9 l~~a~~~I~~~~~~L--~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~-l----~di~~~~~v 81 (200)
T 1ais_B 9 LAFALSELDRITAQL--KLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRT-L----DEIADIARV 81 (200)
T ss_dssp HHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCC-H----HHHHHHTTS
T ss_pred HHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCC-H----HHHHHHHCC
Confidence 344455566666666 688999999999999999999999999999999999999999987642 2 234456789
Q ss_pred chhHHHHhHHHHHHHhhccccCCccchhHHHHHHHHhhhcCCccchhccccc----cchhhhhhhHHHH
Q psy14705 241 NRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKDLFAAEFAVLV 305 (329)
Q Consensus 241 ~rKdLL~~Ef~VL~aLeFsL~vP~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~dl~~~e~~~lv 305 (329)
++++|...+..++..|+|++.+....-..++.|+....-++.+-.+..|.|. +++++.-..|..|
T Consensus 82 ~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~i 150 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGL 150 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHH
Confidence 9999999999999999998865001222234455544423333344555554 4455544444443
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.5e-08 Score=93.88 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhc
Q psy14705 162 RSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLN 241 (329)
Q Consensus 162 RsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~ 241 (329)
....+++..++... +|-+.++.+|.+||.|++-++++...++..+|+|||++|+|.++.++. + ++|-+.++++
T Consensus 127 ~~a~~~I~~~~~~L--~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prt-l----~ei~~~~~v~ 199 (345)
T 3k7a_M 127 QAAFAKITMLCDAA--ELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVART-F----KEIQSLIHVK 199 (345)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCC-H----HHHHHSSSCC
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCcc-H----HHHHHHHCCC
Confidence 34456666677666 799999999999999999999999999999999999999999987532 2 2344556899
Q ss_pred hhHHHHhHHHHHHHhh------------ccccC--CccchhHHHHHHHHhhhcCCccchhccccc----cchhhhhhhHH
Q psy14705 242 RKDLFAAEFAVLVALE------------FGLHL--PTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKDLFAAEFAV 303 (329)
Q Consensus 242 rKdLL~~Ef~VL~aLe------------FsL~v--P~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~dl~~~e~~~ 303 (329)
+++|...+..++..|+ |.+.+ |...| .|+....-++.+-....|+|. |.+++.-..|.
T Consensus 200 ~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i----~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~ 275 (345)
T 3k7a_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYI----PRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp SHHHHHHHHHHHHHHTCC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHH----HHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHH
Confidence 9999999999999998 77765 44343 444443333444455667776 66777667776
Q ss_pred HHH
Q psy14705 304 LVA 306 (329)
Q Consensus 304 lva 306 (329)
.||
T Consensus 276 ~IA 278 (345)
T 3k7a_M 276 TIA 278 (345)
T ss_dssp ---
T ss_pred HHH
Confidence 655
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=97.77 E-value=4.4e-05 Score=73.10 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhc
Q psy14705 162 RSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLN 241 (329)
Q Consensus 162 RsLKrem~~Ia~~~~~~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~ 241 (329)
..-.+++..++... +|-..++-+|..+|.+++-++++.-.++..+||||+++|++.++.++. +.+|-+..+++
T Consensus 127 ~~a~~~I~~~~~~L--~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prt-----l~eI~~~~~v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAA--ELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVART-----FKEIQSLIHVK 199 (345)
T ss_dssp THHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCC-----HHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCcc-----HHHHHHHhCCC
Confidence 44455666777666 688889999999999999999999999999999999999999987642 22444567899
Q ss_pred hhHHHHhHHHHHHHhhcc----------ccCCccchhHHHHHHHHhhhcCCccchhccccc----cchhhhhhhHHHH
Q psy14705 242 RKDLFAAEFAVLVALEFG----------LHLPTWDILPHFQRLTYEKFLGGRKTENIFRLN----RKDLFAAEFAVLV 305 (329)
Q Consensus 242 rKdLL~~Ef~VL~aLeFs----------L~vP~~eV~pH~~RLl~e~~~g~~k~e~~~r~~----r~dl~~~e~~~lv 305 (329)
+++|-.....+...|++. ..+|.-....++.|+-...-++.+-....++|. +..++.=--|.-|
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~I 277 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp TTHHHHHHHHHHHCC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHH
Confidence 999999999998888874 223333333445555544433443333344444 4444444444433
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=96.90 E-value=0.0041 Score=59.26 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=72.5
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHHHHHH---hhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhH
Q psy14705 168 MRKIAKVDNSNLELLTVAQAYVYFEKLILL---ALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKD 244 (329)
Q Consensus 168 m~~Ia~~~~~~ld~~TVA~A~VYFERLvLk---g~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKd 244 (329)
+..|.+. + .+...++=.|.+|.+||..+ -.++..|.+-+..+||++|+||-|... .-.. ..-++-+++.+|
T Consensus 81 l~RI~k~-t-~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~-ysN~---~wAkVgGisl~E 154 (293)
T 2pmi_B 81 FIRLTKF-S-SLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSF-STNA---HYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHT-T-TCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSC-CCHH---HHHHHHTSCHHH
T ss_pred HHHHHHH-c-CCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccc-cChh---HhhhccCcCHHH
Confidence 4444432 3 67788888889999999986 235788999999999999999955321 1111 222346899999
Q ss_pred HHHhHHHHHHHhhccccCCccchhH
Q psy14705 245 LFAAEFAVLVALEFGLHLPTWDILP 269 (329)
Q Consensus 245 LL~~Ef~VL~aLeFsL~vP~~eV~p 269 (329)
|-..|...|..|+|+|.|+..+..-
T Consensus 155 LN~LE~eFL~lLdf~L~V~~ee~~~ 179 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPRDHNITL 179 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCCTTHHHH
T ss_pred HHHHHHHHHHHcCCceeeCHHHHHH
Confidence 9999999999999999999887654
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.58 E-value=0.16 Score=43.51 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhh
Q psy14705 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALE 257 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLe 257 (329)
+++..+.-.|+.++++..-.+.+...++-.+|+||+++|+++++.+. .. +++.+..+++..+|-..=..+...|+
T Consensus 120 ~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~-t~----~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 120 GLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR-TQ----REVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCC-CH----HHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCC-CH----HHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 45666788999999999998999999999999999999999977543 11 23344456666655544444445555
Q ss_pred c
Q psy14705 258 F 258 (329)
Q Consensus 258 F 258 (329)
+
T Consensus 195 ~ 195 (200)
T 1ais_B 195 I 195 (200)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=91.85 E-value=0.7 Score=39.84 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhh
Q psy14705 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALE 257 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLe 257 (329)
+++.-+...|+.++++....++....++--+|+||+++|+++.+.+.. . +++.+..+++..+|-..=..++..++
T Consensus 114 ~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~-~----~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 114 CLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRT-Q----KEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCC-H----HHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCC-H----HHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456667788999999999999999999999999999999999865431 1 23334456666655444333333343
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=75.13 E-value=6.8 Score=34.41 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=38.2
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCc
Q psy14705 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
+++.-....|+-+-+........-...+-.+|+||+++|+++.+.
T Consensus 146 ~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 146 IINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp SSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 455656778888889888888888999999999999999999654
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=69.89 E-value=8.9 Score=34.97 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCc
Q psy14705 179 LELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 179 ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
.+.-+..+||-+.+....-...-....-.+|+||++||+++...
T Consensus 170 ~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~ 213 (285)
T 3rgf_B 170 QEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQK 213 (285)
T ss_dssp CHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCC
Confidence 44456677888888877777788899999999999999998654
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=60.94 E-value=14 Score=32.58 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcC
Q psy14705 183 TVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 183 TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
....|+-+-+........-...+-.+|+||+++|+++.+
T Consensus 172 ~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~ 210 (258)
T 2i53_A 172 LVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCK 210 (258)
T ss_dssp HHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhC
Confidence 456777777887777788889999999999999999854
No 25
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=59.21 E-value=26 Score=32.37 Aligned_cols=76 Identities=13% Similarity=-0.054 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHHhHHHHHHHhhccc
Q psy14705 185 AQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGL 260 (329)
Q Consensus 185 A~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~~Ef~VL~aLeFsL 260 (329)
.+|+.+.|--.+....-....-.+|+||+++|.+.-+......+...+.+.+..+++..+|...=..+...++=++
T Consensus 194 ~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 194 KHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566566644455666788899999999999999865332222344455556677777777766666666555444
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=50.25 E-value=23 Score=31.21 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHHHHHH-HhhhcccccchhHHHHHHHHhhhcC
Q psy14705 179 LELLTVAQAYVYFEKLIL-LALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 179 ld~~TVA~A~VYFERLvL-kg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
.+.-...+|+.+.+..+. ....-...+-.+|+||+++|+++.+
T Consensus 159 ~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~ 202 (257)
T 2ivx_A 159 ASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 202 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhC
Confidence 344455667777777663 4556778999999999999999854
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=44.06 E-value=50 Score=29.19 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhchhHHHH
Q psy14705 186 QAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFA 247 (329)
Q Consensus 186 ~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~k~~~Lk~lie~ie~~fri~rKdLL~ 247 (329)
.|+-+.|--.+....-...+-.+|+||+++|.+......-.-..+.+.+.+.-+++..+|..
T Consensus 176 ~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~ 237 (254)
T 2f2c_A 176 AASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRT 237 (254)
T ss_dssp HHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHH
Confidence 45555564444555678899999999999999985211101112233344445666555543
No 28
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=42.93 E-value=5.1 Score=37.79 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCc
Q psy14705 179 LELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 179 ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
++.-+.-.|+-+.++..-.++..-.++--+|+||+++|+.+++.
T Consensus 248 l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 248 LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp --------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 44446678888888888788888999999999999999998764
No 29
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=40.29 E-value=10 Score=28.50 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=20.0
Q ss_pred chhHHHHHHHHhhhcCCccchhccccc--cchhhhhhhH
Q psy14705 266 DILPHFQRLTYEKFLGGRKTENIFRLN--RKDLFAAEFA 302 (329)
Q Consensus 266 eV~pH~~RLl~e~~~g~~k~e~~~r~~--r~dl~~~e~~ 302 (329)
.+..|++||+.+- |+ |++|+...+.
T Consensus 25 ~~f~HlerLLdeE------------I~RVR~~Lf~~~~~ 51 (60)
T 3k6t_A 25 HMFSNVERLLDDE------------IGRVRVALFQTEFP 51 (60)
T ss_dssp TTCHHHHHHHHHH------------HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHccCCC
Confidence 3899999999754 44 8999988874
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=36.56 E-value=39 Score=30.32 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=35.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcC
Q psy14705 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 178 ~ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
++|.-+...|+-+.|.-...+..-...+-.+|+||+++|.++.+
T Consensus 150 ~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~ 193 (269)
T 2b9r_A 150 EVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILD 193 (269)
T ss_dssp CCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhC
Confidence 45655666777777877777778889999999999999998854
No 31
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=32.88 E-value=27 Score=33.18 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHH-HhhhcccccchhHHHHHHHHhhhcC
Q psy14705 180 ELLTVAQAYVYFEKLIL-LALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 180 d~~TVA~A~VYFERLvL-kg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
+.-...+||.+.+..++ ....-....-.+|+||++||+++.+
T Consensus 167 ~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 167 SKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSN 209 (358)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhC
Confidence 33345567767676653 4556678899999999999999854
No 32
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=32.85 E-value=64 Score=28.76 Aligned_cols=35 Identities=6% Similarity=-0.027 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhc
Q psy14705 186 QAYVYFEKLILLALINKENRKLCAGACLLLSAKLN 220 (329)
Q Consensus 186 ~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~n 220 (329)
.|+.+.+........-...+-.+|+||+++|....
T Consensus 181 ~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 181 HAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 45555554333444567888999999999999764
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=32.22 E-value=9.9 Score=36.10 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCc
Q psy14705 179 LELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 179 ld~~TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
+..-+...|+-+.++..=.+++.-.++--+||||+++|+.++..
T Consensus 248 l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 248 LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp --------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCC
Confidence 44446677888888888778888899999999999999998763
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=30.96 E-value=87 Score=27.65 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcC
Q psy14705 186 QAYVYFEKLILLALINKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 186 ~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne 221 (329)
.|+-+.|.-.+....-...+-.+|+||+++|.+..+
T Consensus 175 ~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 175 EVNTLITKALVDPLTGSLPASIISAAGCALLVPANV 210 (257)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhC
Confidence 455566655555556788999999999999998854
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=30.61 E-value=1e+02 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhcCc
Q psy14705 183 TVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDV 222 (329)
Q Consensus 183 TVA~A~VYFERLvLkg~V~K~NRKLvAaACLLLAaK~ne~ 222 (329)
....||-+.+...+-...-...+-.+|+||+++|++..+.
T Consensus 187 l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~ 226 (323)
T 1jkw_A 187 LRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGI 226 (323)
T ss_dssp HHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCC
Confidence 3466777878777666777889999999999999988553
No 36
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=20.57 E-value=1.2e+02 Score=26.84 Aligned_cols=39 Identities=21% Similarity=-0.014 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhh-hcccccchhHHHHHHHHhhhcC
Q psy14705 183 TVAQAYVYFEKLILLAL-INKENRKLCAGACLLLSAKLND 221 (329)
Q Consensus 183 TVA~A~VYFERLvLkg~-V~K~NRKLvAaACLLLAaK~ne 221 (329)
+..+|+-+.|.-.+... .-...+-.+|+||+++|.+..+
T Consensus 157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~ 196 (260)
T 2cch_B 157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT 196 (260)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 44566666665444444 6778899999999999998743
Done!