RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14705
(329 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 1e-05
Identities = 59/377 (15%), Positives = 106/377 (28%), Gaps = 109/377 (28%)
Query: 3 YGALLTPSRYQSKDR----------KESDVGDTPHSAKSYSTRCFSYDAGTLR-AVSNLI 51
Y L++P + + + ++ D AK +R Y LR A+ L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELR 148
Query: 52 PASPPI----AGCFSYDAG--TLRAVSNLIPASPPIAVLDNKAGVDW-ELGDPYSGPYSP 104
PA + G G + ++ + +D + W L
Sbjct: 149 PAKNVLIDGVLGS-----GKTWV--ALDVCLSYKVQCKMDF--KIFWLNLK--------- 190
Query: 105 NLLDDPELIAGKHRTLLTFTSYMTSVIDYVRPL-----DLKKELNDKFKEK-FPHIKLTL 158
N ++ + L TS D+ + ++ EL K K + + L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 159 SKLRSLKREMRKIAKV------------DNSNLELLTVAQAYVYFEKLILLALINKENRK 206
+++ K + L+ A + L E +
Sbjct: 251 LNVQN-----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 207 LCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWD 266
L L + D+ + L T N RL+ + A L TWD
Sbjct: 306 LLL---KYLDCRPQDLPREVLTT------NPRRLS---IIAESIRD--------GLATWD 345
Query: 267 ILPHFQRLTYEKFLGGRKTENIFRLNRKDLFAAE----FAVLVALEFGLHLPT------W 316
+++ + +K I + L AE F L H+PT W
Sbjct: 346 ---NWKHVNCDKL------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 317 ---------DILPHFQR 324
++ +
Sbjct: 397 FDVIKSDVMVVVNKLHK 413
Score = 32.9 bits (74), Expect = 0.17
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 39/178 (21%)
Query: 130 VIDYVRPLDLKKELNDKFKEKFP--HIKLTLSKLRSLKREM--RKIAKVDNSNLELLTVA 185
V D + + K+E++ K L S + EM + + +V N + L
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 186 QAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNR--- 242
+ ++ + ++ +L + AK N + L + + L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQPYLKLRQA---LLELRPAKN 152
Query: 243 ----------KDLFAAE----FAVLVALEFGLHLPTW----------DILPHFQRLTY 276
K A + + V ++F + W +L Q+L Y
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLY 207
Score = 32.1 bits (72), Expect = 0.25
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 44/171 (25%)
Query: 96 DPYSGPYS-PNLLDD----PELIAGKHRTLLTFTSY-MTSVIDY----VRPLD------- 138
P S P++ + E HR+++ Y + D LD
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 139 ---LKK-ELNDKFKEKFPHIKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKL 194
LK E ++ F + L R L++++R + N++ +L Q +++
Sbjct: 478 GHHLKNIEHPERMTL-FRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 195 ILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDL 245
I +N +N + L L + EN+ DL
Sbjct: 534 I------CDN-------DPKYERLVNAI----LDFLPKIEENLICSKYTDL 567
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 38.9 bits (90), Expect = 0.001
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 138 DLKKELNDKFKEKFP---------HIKLTLSKLRSLKRE----MRKIAKVDNSNLELLTV 184
L+ + N KF+ K + L + +L + + + V + V
Sbjct: 21 RLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVV 80
Query: 185 AQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND--VKGDALKTLIEKTENIFRLNR 242
A +YF++ L + + + ++ C L+ K+++ V + ++
Sbjct: 81 GTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKAL 140
Query: 243 KDLFAAEFAVLVALEFGLH 261
+ + E ++ L F L
Sbjct: 141 EQILEYELLLIQQLNFHLI 159
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 38.8 bits (90), Expect = 0.001
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND--------VKGDALKT 229
L T+A +YF + + + R + CL L+ K+ + +K
Sbjct: 56 GLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLL 115
Query: 230 LIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGGRK 284
+ ++++ E +L ++F L + P+ L Y K L G K
Sbjct: 116 NDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEH----PYQFLLKYAKQLKGDK 166
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 36.3 bits (84), Expect = 0.008
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
+ K +L + L ++AKL ++ L T+ + ++ E ++ AL++
Sbjct: 88 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGAC--SGDEILTMELMIMKALKWR 145
Query: 260 LHLPT 264
L T
Sbjct: 146 LSPLT 150
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 35.9 bits (83), Expect = 0.011
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
I++EN + A L ++ K+ L L E L L +
Sbjct: 86 IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGAT--TADKLLTLEVKSLDTLSWV 143
Query: 260 LHLPT-WDILPHFQR 273
D++ +
Sbjct: 144 ADRCLSTDLICYILH 158
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 35.1 bits (81), Expect = 0.019
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
++KE+ + ACLL+++KL + + +L + F R++L E +L L +
Sbjct: 88 VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFS--RQELIDQEKELLEKLAWR 145
Query: 260 LHLPT-WDILPHFQR 273
D+
Sbjct: 146 TEAVLATDVTSFLLL 160
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 35.1 bits (80), Expect = 0.021
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENI 237
L +A A VYF++ + + L A C+ L++K+ + + LI ++
Sbjct: 58 KLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117
Query: 238 FRLN------------RKDLFAAEFAVLVALEFGLHL 262
+ + EF +L ++ L +
Sbjct: 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIV 154
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 35.1 bits (81), Expect = 0.025
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
K +L C+LL++KL + ++ L T++ + + L E VL L++
Sbjct: 108 TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAV--SPRQLRDWEVLVLGKLKWD 165
Query: 260 LHLPT-WDILPHFQR 273
L D L
Sbjct: 166 LAAVIAHDFLAFILH 180
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 34.7 bits (80), Expect = 0.030
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
+ K +L C+ +++K+ + + L T+N ++L E ++ L++
Sbjct: 94 VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSI--RPEELLQMELLLVNKLKWN 151
Query: 260 LHLPT-WDILPHFQR 273
L T D + HF
Sbjct: 152 LAAMTPHDFIEHFLS 166
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 34.8 bits (79), Expect = 0.031
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND--------------VK 223
N+ LT+ A VY + ++ + A A L L+AK+ +
Sbjct: 53 NVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCL 112
Query: 224 GDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGGR 283
++E + + DL E +L L F L + PH + + +
Sbjct: 113 HPQESLPDTRSEAYLQQVQ-DLVILESIILQTLGFELTID----HPHTHVVKCTQLVRAS 167
Query: 284 K 284
K
Sbjct: 168 K 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.057
Identities = 49/303 (16%), Positives = 94/303 (31%), Gaps = 90/303 (29%)
Query: 55 PPIAGCFSYDAGTLRAVSNLIPASPPIAVLDNKAGVD---WELGDPYSGPYSPNLLDDP- 110
+ + A TL + + + G++ W L +P + P LL P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNILEW-LENPSNTPDKDYLLSIPI 236
Query: 111 --ELIAGKHRTLLTFTSYMTS--VIDYVRPLDLKKELN---------------------D 145
LI ++ Y+ + ++ + P +L+ L +
Sbjct: 237 SCPLI-----GVIQLAHYVVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 146 KF------------------KEKFPHIKLTLSKLR-SLKRE------MRKIAKVDNSNLE 180
F E +P+ L S L SL+ M I+ + ++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 181 -LLTVAQAYVYFEKLILLALINKENRKLCAG--ACLL-LSAKLNDVKGDALKTLIEKTEN 236
+ +++ K + ++L+N + +G L L+ L K + +++
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL---DQSRI 407
Query: 237 IFRLNRKDLFAAEFAVLVALEFGLHLPTWDILP-HFQRLT--YEKFLGGRKTENIFRLNR 293
F RK F+ F LP P H L + N+ N
Sbjct: 408 PFS-ERKLKFSNRF-----------LPV--ASPFHSHLLVPASDLINKDLVKNNV-SFNA 452
Query: 294 KDL 296
KD+
Sbjct: 453 KDI 455
Score = 30.4 bits (68), Expect = 1.0
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 29/97 (29%)
Query: 3 YGALLTPSRYQSKDRKESDVGDTPHSAKSYSTRCFSYDAGTLR----------AVS---- 48
Y A++ + K + E + + SY F + G L +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSY---TFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 49 ------NLIPASPPIAGCFS---YDAGTLRAVSNLIP 76
LIPA AG S Y A L ++++++
Sbjct: 1745 EDLKSKGLIPADATFAG-HSLGEYAA--LASLADVMS 1778
Score = 28.5 bits (63), Expect = 4.6
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 33/96 (34%)
Query: 236 NIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGGR-KTENIFR---- 290
+I N +L + E G I ++ + +E + G+ KTE IF+
Sbjct: 1663 DIVINNPVNL-----TIHFGGEKGKR-----IRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 291 -------------LNRKD-----LFAAEFAVLVALE 308
L+ L E A L+
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 33.1 bits (76), Expect = 0.086
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
+ K+ +L + +++K ++ + T+N + + + E +L AL FG
Sbjct: 75 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTY--TKHQIRQMEMKILRALNFG 132
Query: 260 LHLPT 264
L P
Sbjct: 133 LGRPL 137
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 32.3 bits (74), Expect = 0.18
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
+ + +L A +LL++K ++ + + T++ + +K + E VL L F
Sbjct: 76 VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTY--TKKQVLRMEHLVLKVLTFD 133
Query: 260 LHLPT 264
L PT
Sbjct: 134 LAAPT 138
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 31.6 bits (71), Expect = 0.25
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 183 TVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND--VKGDAL-----------KT 229
T+ A VY + + K N+ + + L L+AK+ + K + + +
Sbjct: 51 TINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEP 110
Query: 230 LIEKTENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPHFQRLTYEKFLGG 282
L++ + + ++L E +L L F + + PH + + +
Sbjct: 111 LLDTKCDAYLQQTRELVILETIMLQTLGFEITIE----HPHTDVVKCTQLVRA 159
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 31.2 bits (71), Expect = 0.36
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 200 INKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFG 259
K+ + AC+L+ +K+ VK + L + + F +L E +L AL++
Sbjct: 89 GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCF--TNLELINQEKDILEALKWD 146
Query: 260 LHLPT 264
Sbjct: 147 TEAVL 151
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 30.8 bits (69), Expect = 0.45
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 178 NLELLTVAQAYVYFEK-LILLALINKENRKLCAGACLLLSAKLNDVK---GDALKTLIEK 233
L +A A V + ++ + + C+ LS K+ + +
Sbjct: 43 RLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDL 102
Query: 234 TENIFRLNRKDLFAAEFAVLVALEFGLHLPTWDILPH 270
+L+R ++ EF ++ L+ L + P+
Sbjct: 103 WSLKVKLSRSNISEIEFEIISVLDAFLIVHH----PY 135
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 29.9 bits (68), Expect = 1.2
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 94 LGDPYSGPYSPNLLDDPEL--IAGKH 117
LG G +L +P + +A K
Sbjct: 225 LGSQSKGEVRLKVLQNPIVTEVAEKL 250
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Length = 335
Score = 28.7 bits (65), Expect = 2.7
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 94 LGDPYSGPYSPNLLDDPEL--IAGKH 117
LG P + ++L +P L +A K
Sbjct: 229 LGSPGTTWLKSDVLKNPILNMVAEKL 254
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 27.5 bits (61), Expect = 6.3
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 121 LTFTSYMTSVIDYVRPLDLKKELNDKFKEKFPHIKLTL 158
L F D ++L DKF E+ +
Sbjct: 40 LEFYHGYHHSEDEWPVAKTMRDLYDKFAEEHKDSGVEF 77
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like
protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A
{Rattus norvegicus} PDB: 3qkz_A*
Length = 316
Score = 27.5 bits (62), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 95 GDPYSGPYSPNLLDDPEL--IAGKH 117
PY+ P P +L+ P++ IA KH
Sbjct: 217 DRPYAKPEDPVVLEIPKIKEIAAKH 241
>3d34_A Spondin-2; cell adhesion, extracellular matrix, immune response,
polymorphism, secreted, immune system; 1.80A {Homo
sapiens}
Length = 223
Score = 27.0 bits (59), Expect = 7.9
Identities = 12/50 (24%), Positives = 15/50 (30%)
Query: 61 FSYDAGTLRAVSNLIPASPPIAVLDNKAGVDWELGDPYSGPYSPNLLDDP 110
+ YDAGT + P I P + Y P L P
Sbjct: 159 YPYDAGTDSGFTFSSPNFATIPQDTVTEITSSSPSHPANSFYYPRLKALP 208
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_F
Length = 213
Score = 26.7 bits (58), Expect = 8.8
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 152 PHIKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKL---ILLALINKENR 205
P + L LR + KV + LELL + + YV + + L+ K
Sbjct: 66 PKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGF 122
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT;
0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A*
1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A*
2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A*
2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Length = 316
Score = 27.1 bits (61), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 95 GDPYSGPYSPNLLDDPEL--IAGKH 117
P++ P P+LL+DP + IA KH
Sbjct: 217 DRPWAKPEDPSLLEDPRIKAIAAKH 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,976,497
Number of extensions: 301536
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 38
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)