RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14705
         (329 letters)



>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 151

 Score = 66.6 bits (162), Expect = 4e-14
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 15/139 (10%)

Query: 138 DLKKELNDKFKEK-------------FPHIKLTLSKLRSLKREMRKIAKVDNSNLELLTV 184
            L+ + N KF+ K             F      ++  +  ++ + +   V    +    V
Sbjct: 11  RLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVV 70

Query: 185 AQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND--VKGDALKTLIEKTENIFRLNR 242
             A +YF++  L   + + + ++    C  L+ K+++  V        + ++        
Sbjct: 71  GTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKAL 130

Query: 243 KDLFAAEFAVLVALEFGLH 261
           + +   E  ++  L F L 
Sbjct: 131 EQILEYELLLIQQLNFHLI 149


>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 143

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 156 LTLSKLRSLKREM-RKIAKVDNS-NLELLTVAQAYVYFEKLILLALINKENRKLCAGACL 213
           +   K  S +++    I ++    N+  LT+  A VY  +  +     K N+ + +   L
Sbjct: 22  VEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL 81

Query: 214 LLSAKLNDVK-------------GDALKTLIEKTENIFRLNRKDLFAAEFAVLVALEFGL 260
            L+AK+ +                  L+ L++   + +    ++L   E  +L  L F +
Sbjct: 82  FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEI 141

Query: 261 H 261
            
Sbjct: 142 T 142


>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 140

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 19/138 (13%)

Query: 130 VIDYVRPLDLKKELNDKFKEKFPHIKLTLSKLRSLKREMRKIA------KVDNSNLELLT 183
           V   +   +     +  F E+ P ++           +MR I         +   L   T
Sbjct: 14  VWKIMLNKEKTYLRDQHFLEQHPLLQP----------KMRAILLDWLMEVCEVYKLHRET 63

Query: 184 VAQAYVYFEK-LILLALINKENRKLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNR 242
              A  +F++ +     + K   +L   + L ++AKL ++    L      T+     + 
Sbjct: 64  FYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGAC--SG 121

Query: 243 KDLFAAEFAVLVALEFGL 260
            ++   E  ++ AL++ L
Sbjct: 122 DEILTMELMIMKALKWRL 139


>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 144

 Score = 37.3 bits (86), Expect = 6e-04
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 178 NLELLTVAQAYVYFEKLILLALINKENRKLCAGACLLLSAKLND----------VKGDAL 227
            L   T+A   +YF +  +     +  R +    CL L+ K+ +               L
Sbjct: 52  GLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLL 111

Query: 228 KTLIEKTENIFRLNRKDLFAAEFAVLVALEFGLH 261
             +           ++++   E  +L  ++F L 
Sbjct: 112 NDVQFGQFGDD--PKEEVMVLERILLQTIKFDLQ 143


>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein
           AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId:
           358]}
          Length = 149

 Score = 27.6 bits (61), Expect = 1.2
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 55  PPIAGCFSYDAGTLRAVSNLIPASPPIAVLDNKAGVDWELGDPYSG 100
           P I G     +  +  +S  + A+ P+A L++K+  ++  G+ Y G
Sbjct: 94  PAIKGIIEDTSPIIWGLSRRVVATAPLAALNSKSFEEY--GNAYCG 137


>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 248

 Score = 28.0 bits (62), Expect = 1.5
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 146 KFKEKFPHIKLTLSKLRSLKREMRKIAKVDNSNLELLTVAQAYVYFEKLILLALINKENR 205
           ++  K  +  L+      + R+MRK+   D    + +           +I +  +   + 
Sbjct: 6   EYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYV--------ICCMINIWNVKYNSI 57

Query: 206 KLCAGACLLLSAKLNDVKGDALKTLIEKTENIFRLNRKDL 245
              A     L     DV    +  ++E       +N+   
Sbjct: 58  HCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKF 97


>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 368

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 2/76 (2%)

Query: 14  SKDRKESDVGDTPHSAKSYSTRCFSYDAGTLRAVSNLIPASPPIAGCFSYDAGTLRAVSN 73
           + D       +   S  + +    S  A   +    +       A   + D  +    ++
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333

Query: 74  LIPASPPIAVLDNKAG 89
               +  + + D  + 
Sbjct: 334 --AGTEVLDIYDAASD 347


>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 265

 Score = 26.2 bits (57), Expect = 5.9
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 211 ACLLLSAKLNDVKGDALKTLIEKTENIFRLN 241
             L++  KL+ V+ + L  +      I R+N
Sbjct: 234 HILIVPGKLHIVEAEYLVEIAGAPREILRVN 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,193,917
Number of extensions: 55285
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 12
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)