Query psy14708
Match_columns 513
No_of_seqs 218 out of 1740
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:35:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384|consensus 100.0 1E-55 2.2E-60 472.3 23.3 312 8-510 348-659 (1373)
2 KOG0385|consensus 100.0 4.6E-55 1E-59 448.1 25.5 293 22-510 159-455 (971)
3 KOG0387|consensus 100.0 1.6E-50 3.5E-55 416.8 24.0 182 323-509 314-512 (923)
4 PLN03142 Probable chromatin-re 100.0 3.2E-50 7E-55 444.3 26.3 294 17-509 157-454 (1033)
5 KOG0391|consensus 100.0 1.6E-49 3.5E-54 418.6 18.8 288 26-510 611-909 (1958)
6 KOG0389|consensus 100.0 3.5E-47 7.5E-52 391.6 23.4 291 20-506 389-695 (941)
7 KOG4439|consensus 100.0 5.8E-48 1.2E-52 392.5 17.2 291 27-509 322-670 (901)
8 KOG0392|consensus 100.0 8.6E-47 1.9E-51 402.2 22.5 288 29-508 974-1283(1549)
9 KOG1002|consensus 100.0 1E-46 2.2E-51 369.8 17.6 277 29-508 183-523 (791)
10 PF00176 SNF2_N: SNF2 family N 100.0 3.3E-46 7.2E-51 372.1 20.1 186 321-506 104-299 (299)
11 KOG0388|consensus 100.0 8.1E-46 1.8E-50 375.8 16.6 292 17-509 555-857 (1185)
12 KOG0386|consensus 100.0 2.3E-45 4.9E-50 386.4 14.7 302 12-509 376-692 (1157)
13 KOG0390|consensus 100.0 6.9E-42 1.5E-46 362.2 22.2 289 29-507 237-544 (776)
14 KOG1015|consensus 100.0 9.3E-41 2E-45 347.3 17.9 312 29-506 667-997 (1567)
15 KOG0383|consensus 100.0 9.5E-35 2.1E-39 305.6 10.4 309 16-509 279-596 (696)
16 KOG1016|consensus 100.0 1E-33 2.3E-38 289.8 16.2 341 29-507 253-608 (1387)
17 COG0553 HepA Superfamily II DN 100.0 8.8E-34 1.9E-38 322.6 15.6 186 324-509 447-661 (866)
18 KOG1001|consensus 100.0 1E-32 2.2E-37 294.4 18.6 188 321-510 231-431 (674)
19 KOG0298|consensus 100.0 9.7E-33 2.1E-37 297.6 12.1 356 29-507 244-692 (1394)
20 KOG1000|consensus 100.0 8.9E-32 1.9E-36 265.2 17.1 149 326-475 288-448 (689)
21 PRK04914 ATP-dependent helicas 100.0 9.2E-29 2E-33 273.4 20.0 143 324-467 247-448 (956)
22 TIGR00603 rad25 DNA repair hel 99.8 3.7E-19 8.1E-24 191.3 16.3 109 325-468 344-465 (732)
23 COG1061 SSL2 DNA or RNA helica 99.6 6.2E-14 1.3E-18 146.5 16.1 118 325-475 123-245 (442)
24 PF04851 ResIII: Type III rest 99.5 2.9E-14 6.3E-19 131.1 10.7 73 29-122 2-75 (184)
25 PRK13766 Hef nuclease; Provisi 99.4 3.8E-12 8.2E-17 143.2 18.0 118 325-443 108-241 (773)
26 PHA02558 uvsW UvsW helicase; P 99.3 8.1E-12 1.8E-16 133.1 14.1 61 325-388 202-263 (501)
27 cd00046 DEXDc DEAD-like helica 99.3 1.3E-11 2.7E-16 107.6 11.4 62 323-384 78-144 (144)
28 smart00487 DEXDc DEAD-like hel 99.3 1.7E-11 3.7E-16 113.4 12.5 71 29-121 7-78 (201)
29 PRK11448 hsdR type I restricti 99.3 1.8E-11 3.9E-16 139.6 12.1 75 28-120 411-486 (1123)
30 KOG1123|consensus 99.2 4.4E-11 9.5E-16 119.7 8.7 111 324-468 390-512 (776)
31 TIGR00348 hsdR type I site-spe 99.1 1.8E-10 3.9E-15 126.4 11.7 81 28-121 236-317 (667)
32 COG4096 HsdR Type I site-speci 99.1 1.1E-10 2.3E-15 124.3 7.7 76 29-122 164-240 (875)
33 PF13872 AAA_34: P-loop contai 99.0 7E-09 1.5E-13 100.2 14.6 82 25-119 32-113 (303)
34 COG1111 MPH1 ERCC4-like helica 98.9 3.5E-08 7.5E-13 100.1 15.5 69 29-122 14-83 (542)
35 cd00268 DEADc DEAD-box helicas 98.9 3.3E-08 7.2E-13 92.6 13.6 70 29-121 20-93 (203)
36 KOG0354|consensus 98.8 6.3E-08 1.4E-12 103.6 14.1 69 28-120 60-129 (746)
37 PF00270 DEAD: DEAD/DEAH box h 98.8 4.5E-08 9.7E-13 88.6 11.4 67 324-391 95-168 (169)
38 TIGR00643 recG ATP-dependent D 98.8 8.9E-08 1.9E-12 105.0 14.9 74 29-121 234-308 (630)
39 PRK10917 ATP-dependent DNA hel 98.6 3.8E-07 8.2E-12 100.8 14.2 74 29-121 260-334 (681)
40 TIGR00580 mfd transcription-re 98.6 2.3E-07 5E-12 104.5 11.4 74 29-121 450-524 (926)
41 PRK11192 ATP-dependent RNA hel 98.6 6.3E-07 1.4E-11 94.3 13.3 71 324-394 123-198 (434)
42 PRK01172 ski2-like helicase; P 98.6 6.4E-07 1.4E-11 99.4 13.9 67 29-120 21-88 (674)
43 TIGR00614 recQ_fam ATP-depende 98.5 6.9E-07 1.5E-11 94.8 12.9 78 324-401 101-189 (470)
44 COG4889 Predicted helicase [Ge 98.5 9.5E-08 2.1E-12 101.8 6.0 67 29-118 160-227 (1518)
45 PRK10590 ATP-dependent RNA hel 98.5 8.1E-07 1.8E-11 93.9 12.9 62 324-385 125-191 (456)
46 PRK02362 ski2-like helicase; P 98.5 1.1E-06 2.3E-11 98.4 14.2 68 29-120 22-90 (737)
47 COG1204 Superfamily II helicas 98.5 7.7E-07 1.7E-11 98.3 12.2 72 321-394 119-198 (766)
48 PRK11776 ATP-dependent RNA hel 98.5 1.3E-06 2.8E-11 92.6 12.7 62 324-385 123-189 (460)
49 PRK11634 ATP-dependent RNA hel 98.4 2.1E-06 4.6E-11 93.6 13.5 62 324-385 125-191 (629)
50 PRK00254 ski2-like helicase; P 98.4 2.3E-06 4.9E-11 95.6 14.0 70 324-395 114-188 (720)
51 PRK10689 transcription-repair 98.4 1.2E-06 2.6E-11 100.9 11.9 60 324-389 703-763 (1147)
52 PTZ00424 helicase 45; Provisio 98.4 2.6E-06 5.7E-11 88.6 12.4 62 325-386 147-213 (401)
53 COG1200 RecG RecG-like helicas 98.4 2.8E-06 6.1E-11 89.9 12.2 61 324-390 365-427 (677)
54 PRK01297 ATP-dependent RNA hel 98.4 2.1E-06 4.4E-11 91.4 11.2 62 324-385 213-281 (475)
55 PRK11057 ATP-dependent DNA hel 98.4 4.7E-06 1E-10 91.1 13.8 76 325-400 116-200 (607)
56 PRK13767 ATP-dependent helicas 98.4 5E-06 1.1E-10 94.4 14.5 69 324-394 146-225 (876)
57 PRK04837 ATP-dependent RNA hel 98.3 3.6E-06 7.7E-11 88.2 12.0 63 324-386 133-202 (423)
58 COG1197 Mfd Transcription-repa 98.3 4.5E-06 9.8E-11 93.3 12.7 63 322-390 695-758 (1139)
59 PTZ00110 helicase; Provisional 98.3 3.5E-06 7.6E-11 90.8 11.2 62 324-385 253-319 (545)
60 PRK04537 ATP-dependent RNA hel 98.3 6.1E-06 1.3E-10 89.4 12.9 63 324-386 134-204 (572)
61 PLN00206 DEAD-box ATP-dependen 98.3 6.9E-06 1.5E-10 88.2 13.1 63 324-386 246-312 (518)
62 TIGR01389 recQ ATP-dependent D 98.3 4E-06 8.7E-11 91.6 11.2 76 324-399 103-187 (591)
63 PRK09401 reverse gyrase; Revie 98.3 8E-06 1.7E-10 94.5 13.9 36 324-359 179-214 (1176)
64 PRK05580 primosome assembly pr 98.2 8.6E-06 1.9E-10 89.9 12.0 71 29-121 143-214 (679)
65 TIGR03817 DECH_helic helicase/ 98.2 1.1E-05 2.4E-10 89.9 12.6 68 29-119 35-103 (742)
66 KOG0298|consensus 98.1 1.2E-06 2.7E-11 97.2 2.1 106 30-135 286-459 (1394)
67 TIGR01587 cas3_core CRISPR-ass 98.1 1.1E-05 2.4E-10 82.6 9.0 51 72-122 3-54 (358)
68 COG1205 Distinct helicase fami 98.1 3.4E-05 7.3E-10 86.7 12.7 62 323-384 166-242 (851)
69 PF00176 SNF2_N: SNF2 family N 98.0 5.7E-06 1.2E-10 82.1 5.6 88 34-131 1-94 (299)
70 PLN03142 Probable chromatin-re 98.0 3.8E-06 8.1E-11 95.1 3.4 61 53-131 192-253 (1033)
71 TIGR00595 priA primosomal prot 98.0 2.8E-05 6E-10 82.8 9.8 48 73-122 2-50 (505)
72 TIGR03158 cas3_cyano CRISPR-as 97.9 0.00012 2.7E-09 74.7 13.2 46 71-121 17-63 (357)
73 TIGR03714 secA2 accessory Sec 97.9 7.5E-05 1.6E-09 81.8 12.0 50 69-120 84-134 (762)
74 COG0610 Type I site-specific r 97.8 0.00013 2.8E-09 83.3 11.8 61 326-388 352-417 (962)
75 PLN03137 ATP-dependent DNA hel 97.8 0.00022 4.8E-09 80.6 12.7 78 323-400 551-642 (1195)
76 PRK15483 type III restriction- 97.8 0.00042 9.2E-09 77.5 14.6 44 69-112 60-103 (986)
77 PF07652 Flavi_DEAD: Flaviviru 97.8 0.00019 4E-09 62.2 9.2 61 326-387 74-139 (148)
78 KOG4439|consensus 97.7 2.3E-05 5E-10 82.5 4.2 70 52-133 348-421 (901)
79 PRK09694 helicase Cas3; Provis 97.7 0.00022 4.9E-09 80.1 12.1 50 71-120 304-354 (878)
80 KOG1002|consensus 97.7 1.9E-05 4.2E-10 79.9 2.7 60 50-131 205-266 (791)
81 TIGR01054 rgy reverse gyrase. 97.6 0.00027 5.8E-09 82.3 11.0 36 324-360 178-213 (1171)
82 COG1201 Lhr Lhr-like helicases 97.6 0.00032 6.9E-09 77.4 10.4 73 323-402 122-206 (814)
83 KOG1015|consensus 97.6 3E-05 6.5E-10 83.9 2.1 40 46-86 693-734 (1567)
84 TIGR02621 cas3_GSU0051 CRISPR- 97.4 0.001 2.3E-08 73.8 11.7 72 28-121 13-86 (844)
85 KOG0350|consensus 97.4 0.00067 1.5E-08 69.2 9.1 79 29-121 158-239 (620)
86 KOG1513|consensus 97.3 0.0033 7.2E-08 67.5 12.6 116 348-472 407-540 (1300)
87 PRK14701 reverse gyrase; Provi 97.3 0.0006 1.3E-08 81.3 8.0 36 324-359 178-213 (1638)
88 PRK09751 putative ATP-dependen 97.2 0.002 4.4E-08 75.8 12.0 69 324-394 99-177 (1490)
89 PRK09200 preprotein translocas 97.1 0.0039 8.3E-08 69.2 11.5 37 69-107 92-128 (790)
90 smart00489 DEXDc3 DEAD-like he 97.1 0.0025 5.4E-08 63.1 9.2 73 29-120 7-84 (289)
91 smart00488 DEXDc2 DEAD-like he 97.1 0.0025 5.4E-08 63.1 9.2 73 29-120 7-84 (289)
92 COG4581 Superfamily II RNA hel 97.1 0.0036 7.8E-08 70.5 11.1 69 27-120 116-185 (1041)
93 KOG0947|consensus 97.0 0.0016 3.5E-08 71.3 7.7 51 22-95 289-339 (1248)
94 PHA02653 RNA helicase NPH-II; 97.0 0.0054 1.2E-07 67.4 12.0 41 346-386 291-333 (675)
95 PF13086 AAA_11: AAA domain; P 97.0 0.0069 1.5E-07 57.4 11.1 68 30-119 1-75 (236)
96 KOG0952|consensus 97.0 0.0025 5.5E-08 70.5 8.6 63 347-414 239-310 (1230)
97 TIGR00963 secA preprotein tran 96.9 0.00049 1.1E-08 75.1 2.9 37 69-107 70-106 (745)
98 KOG0331|consensus 96.9 0.0087 1.9E-07 62.8 11.6 74 323-400 214-294 (519)
99 PF02562 PhoH: PhoH-like prote 96.9 0.007 1.5E-07 56.3 9.5 55 31-108 5-59 (205)
100 TIGR01407 dinG_rel DnaQ family 96.7 0.014 3.1E-07 66.6 12.6 71 28-119 243-315 (850)
101 PRK12899 secA preprotein trans 96.7 0.011 2.4E-07 66.0 10.8 60 325-397 184-253 (970)
102 PRK10536 hypothetical protein; 96.6 0.013 2.8E-07 56.2 9.6 55 327-388 162-216 (262)
103 TIGR03117 cas_csf4 CRISPR-asso 96.6 0.035 7.7E-07 60.4 13.6 51 71-121 19-70 (636)
104 KOG0330|consensus 96.5 0.023 5E-07 56.7 10.7 65 323-387 178-248 (476)
105 KOG0338|consensus 96.5 0.0093 2E-07 61.3 8.1 72 322-394 300-377 (691)
106 KOG0948|consensus 96.5 0.01 2.2E-07 63.7 8.4 83 10-117 104-192 (1041)
107 COG4098 comFA Superfamily II D 96.4 0.059 1.3E-06 53.1 12.6 58 29-107 96-153 (441)
108 KOG1803|consensus 96.4 0.038 8.3E-07 58.3 11.8 59 29-111 184-242 (649)
109 TIGR00604 rad3 DNA repair heli 96.4 0.021 4.5E-07 63.9 10.7 72 30-120 10-83 (705)
110 COG0556 UvrB Helicase subunit 96.3 0.015 3.2E-07 60.4 8.4 85 34-141 16-101 (663)
111 PRK12898 secA preprotein trans 96.2 0.042 9.1E-07 59.9 11.6 38 68-107 116-153 (656)
112 TIGR01970 DEAH_box_HrpB ATP-de 96.1 0.024 5.2E-07 63.9 9.6 45 71-117 20-65 (819)
113 COG1110 Reverse gyrase [DNA re 96.1 0.025 5.4E-07 63.0 9.1 37 322-358 179-215 (1187)
114 PRK13104 secA preprotein trans 96.0 0.042 9E-07 61.5 10.7 59 325-396 172-239 (896)
115 COG1203 CRISPR-associated heli 96.0 0.03 6.6E-07 62.7 9.8 75 29-122 194-271 (733)
116 PRK11664 ATP-dependent RNA hel 96.0 0.04 8.6E-07 62.2 10.7 66 326-391 95-166 (812)
117 COG0513 SrmB Superfamily II DN 95.8 0.11 2.3E-06 55.9 12.8 70 324-394 150-224 (513)
118 COG1202 Superfamily II helicas 95.8 0.086 1.9E-06 55.3 11.3 75 321-397 312-393 (830)
119 COG0514 RecQ Superfamily II DN 95.8 0.05 1.1E-06 58.2 9.7 79 324-402 107-194 (590)
120 COG3587 Restriction endonuclea 95.7 0.017 3.7E-07 63.0 6.0 39 73-111 79-117 (985)
121 PF09848 DUF2075: Uncharacteri 95.6 0.036 7.8E-07 56.6 7.7 42 72-113 5-46 (352)
122 PF13604 AAA_30: AAA domain; P 95.5 0.061 1.3E-06 50.0 8.2 39 346-386 93-132 (196)
123 KOG0353|consensus 95.5 0.12 2.6E-06 51.3 10.4 75 323-397 185-273 (695)
124 PRK13103 secA preprotein trans 95.4 0.082 1.8E-06 59.1 10.0 32 343-385 199-230 (913)
125 PRK11131 ATP-dependent RNA hel 95.2 0.073 1.6E-06 62.1 9.1 65 325-390 164-234 (1294)
126 PRK07246 bifunctional ATP-depe 95.1 0.24 5.2E-06 56.2 12.7 37 323-359 412-449 (820)
127 KOG1802|consensus 95.0 0.074 1.6E-06 56.6 7.5 66 29-118 409-475 (935)
128 PF13401 AAA_22: AAA domain; P 94.9 0.03 6.4E-07 47.9 3.9 36 348-385 89-126 (131)
129 COG1198 PriA Primosomal protei 94.8 0.12 2.7E-06 57.0 9.2 82 29-131 197-279 (730)
130 PRK04296 thymidine kinase; Pro 94.7 0.15 3.3E-06 47.1 8.4 25 71-95 5-29 (190)
131 TIGR00376 DNA helicase, putati 94.7 0.23 5E-06 54.7 11.0 66 29-118 156-222 (637)
132 PRK12904 preprotein translocas 94.7 0.19 4E-06 56.2 10.2 38 68-107 94-131 (830)
133 PF12340 DUF3638: Protein of u 94.7 0.074 1.6E-06 50.1 6.1 123 27-174 20-144 (229)
134 KOG1001|consensus 94.6 0.022 4.7E-07 62.4 2.7 66 65-130 149-224 (674)
135 PRK12326 preprotein translocas 94.5 0.31 6.7E-06 53.4 11.0 36 70-107 93-128 (764)
136 PRK08074 bifunctional ATP-depe 94.4 0.77 1.7E-05 53.1 14.7 38 322-359 429-468 (928)
137 PF07517 SecA_DEAD: SecA DEAD- 94.3 0.29 6.4E-06 47.5 9.4 15 344-358 195-209 (266)
138 PRK13107 preprotein translocas 94.3 0.27 5.9E-06 55.1 10.2 42 343-397 199-240 (908)
139 TIGR01447 recD exodeoxyribonuc 94.0 0.28 6E-06 53.4 9.8 39 346-386 259-297 (586)
140 PF11496 HDA2-3: Class II hist 94.0 0.056 1.2E-06 53.5 4.0 60 450-509 4-76 (297)
141 KOG0328|consensus 94.0 0.43 9.3E-06 45.9 9.6 74 326-403 147-225 (400)
142 KOG0951|consensus 94.0 0.097 2.1E-06 59.5 6.1 51 71-121 328-388 (1674)
143 TIGR01448 recD_rel helicase, p 93.9 0.29 6.3E-06 54.8 9.8 61 29-112 322-382 (720)
144 KOG0385|consensus 93.7 0.078 1.7E-06 57.4 4.6 60 54-131 191-251 (971)
145 TIGR01967 DEAH_box_HrpA ATP-de 93.6 0.26 5.7E-06 57.8 9.0 67 327-393 159-230 (1283)
146 COG1875 NYN ribonuclease and A 93.4 0.19 4.2E-06 50.2 6.4 37 348-386 353-389 (436)
147 KOG1131|consensus 93.1 0.17 3.7E-06 52.5 5.7 50 71-120 38-90 (755)
148 PRK14873 primosome assembly pr 93.1 0.19 4.1E-06 55.4 6.5 52 77-130 169-222 (665)
149 PRK10875 recD exonuclease V su 93.1 0.38 8.3E-06 52.6 8.8 39 346-386 265-303 (615)
150 KOG0343|consensus 93.0 0.41 9E-06 50.2 8.3 71 323-394 189-265 (758)
151 PRK12906 secA preprotein trans 92.7 0.63 1.4E-05 51.9 9.9 37 69-107 94-130 (796)
152 TIGR00631 uvrb excinuclease AB 92.5 0.59 1.3E-05 51.6 9.5 76 30-128 9-86 (655)
153 KOG0345|consensus 92.3 1 2.2E-05 46.5 9.9 37 324-360 131-171 (567)
154 KOG0342|consensus 92.1 0.98 2.1E-05 46.8 9.6 70 324-394 205-280 (543)
155 KOG4284|consensus 92.0 0.43 9.3E-06 50.9 7.1 62 326-387 145-212 (980)
156 KOG0347|consensus 91.9 0.58 1.3E-05 49.1 7.7 62 324-385 313-387 (731)
157 TIGR02562 cas3_yersinia CRISPR 91.8 22 0.00047 41.2 20.4 74 320-393 558-643 (1110)
158 KOG0335|consensus 91.7 0.63 1.4E-05 48.5 7.9 61 323-385 201-273 (482)
159 TIGR02881 spore_V_K stage V sp 91.4 0.51 1.1E-05 45.9 6.6 23 70-92 44-66 (261)
160 KOG0991|consensus 91.2 0.4 8.7E-06 45.0 5.2 42 327-371 94-135 (333)
161 KOG0339|consensus 90.8 1.4 3E-05 45.9 9.1 62 323-384 345-411 (731)
162 KOG0348|consensus 90.8 0.95 2.1E-05 47.4 8.0 36 324-359 262-300 (708)
163 PF13245 AAA_19: Part of AAA d 90.2 0.4 8.6E-06 37.1 3.8 42 71-112 13-56 (76)
164 PRK12901 secA preprotein trans 89.4 3.2 7E-05 47.4 11.3 42 342-395 286-327 (1112)
165 PHA03368 DNA packaging termina 89.2 5.4 0.00012 43.6 12.4 42 79-120 265-307 (738)
166 PF06733 DEAD_2: DEAD_2; Inte 89.0 0.3 6.4E-06 44.4 2.6 38 322-359 117-158 (174)
167 KOG0389|consensus 88.8 0.25 5.4E-06 53.8 2.2 22 161-182 471-492 (941)
168 PRK05298 excinuclease ABC subu 88.8 2.4 5.1E-05 47.1 9.9 78 28-128 10-89 (652)
169 KOG0388|consensus 88.5 0.9 2E-05 49.1 6.0 58 55-130 592-650 (1185)
170 PRK12723 flagellar biosynthesi 88.5 4.4 9.6E-05 41.8 11.0 57 346-402 254-315 (388)
171 KOG0949|consensus 88.0 2 4.2E-05 48.4 8.3 50 71-120 529-579 (1330)
172 PLN03025 replication factor C 87.9 2.4 5.2E-05 42.6 8.6 55 346-403 99-157 (319)
173 KOG0340|consensus 87.9 3.4 7.4E-05 41.3 9.1 60 323-384 124-194 (442)
174 smart00382 AAA ATPases associa 87.1 2.4 5.2E-05 35.6 7.1 24 71-94 5-28 (148)
175 PHA02533 17 large terminase pr 87.1 2.9 6.2E-05 45.1 9.0 53 342-395 165-221 (534)
176 PF02399 Herpes_ori_bp: Origin 86.7 1.8 4E-05 48.0 7.2 60 324-384 121-190 (824)
177 KOG1132|consensus 86.5 5.5 0.00012 44.4 10.6 38 321-358 219-259 (945)
178 PRK12900 secA preprotein trans 86.4 7.3 0.00016 44.5 11.8 31 342-383 254-284 (1025)
179 PRK12902 secA preprotein trans 85.7 3.8 8.2E-05 46.2 9.0 20 68-87 98-117 (939)
180 cd01121 Sms Sms (bacterial rad 85.4 4.1 8.8E-05 41.8 8.7 23 71-93 85-107 (372)
181 KOG0384|consensus 85.1 0.92 2E-05 51.9 4.1 59 55-131 395-453 (1373)
182 PRK04914 ATP-dependent helicas 85.1 0.64 1.4E-05 53.3 2.9 38 156-193 195-232 (956)
183 PRK08727 hypothetical protein; 84.5 4.8 0.0001 38.4 8.3 23 71-93 44-66 (233)
184 KOG0337|consensus 84.4 2.9 6.2E-05 42.7 6.7 62 324-385 140-206 (529)
185 PRK14960 DNA polymerase III su 84.2 8 0.00017 42.5 10.6 22 71-92 40-61 (702)
186 KOG0387|consensus 83.8 0.49 1.1E-05 51.7 1.3 86 29-195 204-291 (923)
187 KOG0346|consensus 83.4 4.6 0.0001 41.5 7.8 63 322-384 143-211 (569)
188 PRK07003 DNA polymerase III su 83.2 3.7 8E-05 45.7 7.6 38 346-385 119-159 (830)
189 KOG0391|consensus 82.8 1.4 3.1E-05 50.2 4.3 59 55-131 640-699 (1958)
190 TIGR02880 cbbX_cfxQ probable R 82.2 3.7 7.9E-05 40.5 6.7 26 70-95 60-85 (284)
191 PRK12323 DNA polymerase III su 82.0 21 0.00046 39.3 12.7 37 346-384 124-163 (700)
192 PRK06645 DNA polymerase III su 81.9 19 0.00042 38.6 12.3 23 70-92 45-67 (507)
193 PRK14087 dnaA chromosomal repl 81.7 3.5 7.5E-05 43.6 6.6 25 70-94 143-167 (450)
194 PRK14974 cell division protein 81.4 14 0.00031 37.3 10.6 55 346-401 222-281 (336)
195 PRK08084 DNA replication initi 81.2 5.2 0.00011 38.2 7.2 37 347-383 98-139 (235)
196 KOG0920|consensus 81.1 7.7 0.00017 44.1 9.2 75 327-401 267-346 (924)
197 PRK14958 DNA polymerase III su 81.1 22 0.00048 38.2 12.5 21 72-92 42-62 (509)
198 PRK06526 transposase; Provisio 81.0 3.9 8.4E-05 39.6 6.2 25 71-95 101-125 (254)
199 COG1643 HrpA HrpA-like helicas 81.0 4.8 0.0001 45.5 7.7 72 327-399 142-220 (845)
200 PRK14964 DNA polymerase III su 81.0 13 0.00028 39.6 10.5 22 70-91 37-58 (491)
201 KOG0922|consensus 80.9 4.8 0.0001 43.5 7.2 51 346-400 163-221 (674)
202 KOG0336|consensus 80.7 9.6 0.00021 38.9 8.8 60 324-383 343-407 (629)
203 PRK14949 DNA polymerase III su 80.5 6.8 0.00015 44.5 8.6 21 72-92 42-62 (944)
204 KOG0352|consensus 80.4 7.2 0.00016 40.0 7.8 55 348-402 143-204 (641)
205 PF00448 SRP54: SRP54-type pro 80.2 6.5 0.00014 36.4 7.2 57 346-402 83-143 (196)
206 TIGR03420 DnaA_homol_Hda DnaA 80.2 5.2 0.00011 37.6 6.8 39 348-386 92-134 (226)
207 PRK11889 flhF flagellar biosyn 80.1 18 0.00038 37.5 10.7 56 346-401 320-379 (436)
208 CHL00181 cbbX CbbX; Provisiona 79.9 7.7 0.00017 38.3 8.0 24 71-94 62-85 (287)
209 TIGR03015 pepcterm_ATPase puta 79.3 17 0.00037 35.1 10.3 20 71-90 46-65 (269)
210 CHL00122 secA preprotein trans 79.2 6.2 0.00013 44.5 7.7 21 69-89 90-110 (870)
211 TIGR00603 rad25 DNA repair hel 79.1 1.2 2.6E-05 49.5 2.2 71 27-122 252-323 (732)
212 PRK05703 flhF flagellar biosyn 78.9 15 0.00032 38.5 10.1 56 346-402 299-360 (424)
213 TIGR02768 TraA_Ti Ti-type conj 78.3 12 0.00027 42.2 10.0 57 29-109 351-407 (744)
214 KOG0386|consensus 77.9 1.8 4E-05 48.6 3.1 59 55-131 419-478 (1157)
215 PRK00149 dnaA chromosomal repl 77.8 5.9 0.00013 41.9 6.9 25 71-95 151-175 (450)
216 KOG0989|consensus 77.6 8.4 0.00018 38.0 7.2 21 73-93 62-82 (346)
217 TIGR00362 DnaA chromosomal rep 77.3 5.9 0.00013 41.2 6.7 25 71-95 139-163 (405)
218 PRK14088 dnaA chromosomal repl 77.0 12 0.00025 39.5 8.8 25 71-95 133-157 (440)
219 KOG0329|consensus 76.9 4.9 0.00011 38.3 5.2 60 324-384 161-227 (387)
220 cd00009 AAA The AAA+ (ATPases 76.8 11 0.00023 31.8 7.3 42 346-387 84-132 (151)
221 KOG0951|consensus 76.5 12 0.00025 43.7 8.8 82 22-111 1112-1199(1674)
222 KOG1805|consensus 76.5 9.4 0.0002 43.2 8.0 40 340-384 790-829 (1100)
223 KOG0326|consensus 76.3 13 0.00028 36.7 8.0 59 325-385 204-269 (459)
224 COG1435 Tdk Thymidine kinase [ 76.0 8.7 0.00019 35.3 6.4 33 347-382 83-117 (201)
225 KOG0392|consensus 75.9 3.9 8.5E-05 47.1 5.0 26 373-398 1100-1125(1549)
226 PRK11747 dinG ATP-dependent DN 75.2 2.3 5.1E-05 47.5 3.2 38 322-359 217-259 (697)
227 PRK14961 DNA polymerase III su 74.9 23 0.00051 36.2 10.2 22 71-92 41-62 (363)
228 PRK14956 DNA polymerase III su 74.9 21 0.00045 37.9 9.8 22 71-92 43-64 (484)
229 KOG0926|consensus 74.7 8.6 0.00019 42.6 7.0 72 327-398 352-438 (1172)
230 PRK14086 dnaA chromosomal repl 74.1 9.1 0.0002 41.8 7.1 39 347-385 378-420 (617)
231 KOG1133|consensus 73.2 2.6 5.7E-05 45.6 2.7 40 321-360 320-362 (821)
232 TIGR00596 rad1 DNA repair prot 72.8 16 0.00034 41.6 8.9 76 326-402 9-92 (814)
233 KOG0334|consensus 72.5 9.2 0.0002 43.5 6.8 61 325-385 489-557 (997)
234 PRK05642 DNA replication initi 72.3 15 0.00033 35.0 7.6 37 347-383 98-138 (234)
235 PRK13889 conjugal transfer rel 72.3 22 0.00047 41.4 9.9 38 347-386 434-472 (988)
236 PRK07940 DNA polymerase III su 72.1 27 0.00058 36.2 9.8 25 68-92 36-60 (394)
237 PRK14955 DNA polymerase III su 71.8 41 0.00089 34.9 11.3 23 71-93 41-63 (397)
238 PRK08181 transposase; Validate 71.4 20 0.00044 35.0 8.3 24 71-94 109-132 (269)
239 KOG1016|consensus 71.4 1.1 2.3E-05 49.0 -0.6 57 30-89 265-321 (1387)
240 COG2256 MGS1 ATPase related to 70.6 7.2 0.00016 39.9 5.0 20 70-89 50-69 (436)
241 COG1066 Sms Predicted ATP-depe 70.6 15 0.00033 37.7 7.3 36 326-361 148-183 (456)
242 PRK06893 DNA replication initi 70.0 17 0.00037 34.4 7.4 22 71-92 42-63 (229)
243 PRK12903 secA preprotein trans 69.3 18 0.0004 40.9 8.2 18 70-87 93-110 (925)
244 PF00265 TK: Thymidine kinase; 69.1 18 0.0004 32.8 7.0 33 347-382 77-110 (176)
245 PRK11823 DNA repair protein Ra 68.9 21 0.00045 37.7 8.4 22 72-93 84-105 (446)
246 PRK14952 DNA polymerase III su 68.6 32 0.0007 37.5 9.9 22 72-93 39-60 (584)
247 PF00580 UvrD-helicase: UvrD/R 68.1 5.4 0.00012 39.3 3.7 38 73-110 18-57 (315)
248 PRK05563 DNA polymerase III su 67.3 38 0.00082 36.9 10.2 22 71-92 41-62 (559)
249 PRK04132 replication factor C 67.3 23 0.00049 40.4 8.6 46 346-394 630-679 (846)
250 COG4646 DNA methylase [Transcr 67.1 5.9 0.00013 40.9 3.6 43 374-416 473-520 (637)
251 PRK12422 chromosomal replicati 66.6 17 0.00036 38.4 7.0 24 70-93 143-166 (445)
252 PRK08691 DNA polymerase III su 66.2 69 0.0015 35.7 11.7 22 71-92 41-62 (709)
253 COG0653 SecA Preprotein transl 65.6 27 0.00059 39.3 8.6 34 344-389 198-231 (822)
254 PF05621 TniB: Bacterial TniB 65.4 4.6 0.0001 39.8 2.4 45 340-384 139-189 (302)
255 PRK14965 DNA polymerase III su 64.8 39 0.00084 37.0 9.7 21 72-92 42-62 (576)
256 TIGR00416 sms DNA repair prote 64.1 29 0.00062 36.8 8.3 22 72-93 98-119 (454)
257 PRK08903 DnaA regulatory inact 64.0 28 0.0006 32.7 7.6 21 71-91 45-65 (227)
258 PRK00771 signal recognition pa 63.8 72 0.0016 33.5 11.0 33 71-105 98-130 (437)
259 PRK00440 rfc replication facto 63.5 36 0.00079 33.6 8.7 22 71-92 41-62 (319)
260 PRK05707 DNA polymerase III su 63.4 48 0.001 33.4 9.4 45 30-93 3-47 (328)
261 PF13173 AAA_14: AAA domain 62.8 7.3 0.00016 33.1 3.0 35 347-385 62-99 (128)
262 PRK09111 DNA polymerase III su 62.7 48 0.001 36.4 9.9 23 71-93 49-71 (598)
263 PF03354 Terminase_1: Phage Te 62.2 30 0.00065 36.8 8.1 25 337-361 114-138 (477)
264 PRK13342 recombination factor 61.4 15 0.00032 38.4 5.5 19 71-89 39-57 (413)
265 PF00308 Bac_DnaA: Bacterial d 59.6 27 0.00059 32.9 6.5 27 71-97 37-63 (219)
266 KOG0726|consensus 59.5 4.8 0.0001 39.3 1.3 33 52-89 208-240 (440)
267 cd01124 KaiC KaiC is a circadi 58.4 17 0.00036 32.8 4.8 47 72-120 3-49 (187)
268 KOG0390|consensus 58.3 13 0.00028 41.5 4.5 85 101-185 228-323 (776)
269 PRK11034 clpA ATP-dependent Cl 57.9 22 0.00047 40.2 6.3 21 70-90 209-229 (758)
270 PRK10865 protein disaggregatio 57.5 29 0.00062 40.0 7.3 23 70-92 201-223 (857)
271 PHA03372 DNA packaging termina 56.9 41 0.00089 36.6 7.8 42 342-383 295-336 (668)
272 KOG1807|consensus 56.6 16 0.00035 40.4 4.7 81 15-119 364-449 (1025)
273 PRK06871 DNA polymerase III su 56.2 74 0.0016 32.0 9.2 48 30-93 2-49 (325)
274 TIGR03345 VI_ClpV1 type VI sec 55.5 20 0.00044 41.1 5.7 23 70-92 210-232 (852)
275 PF05876 Terminase_GpA: Phage 55.5 29 0.00064 37.7 6.7 66 29-116 15-81 (557)
276 PRK13826 Dtr system oriT relax 55.0 63 0.0014 38.0 9.5 38 348-387 470-508 (1102)
277 PRK06835 DNA replication prote 54.7 1.1E+02 0.0023 30.9 10.2 26 70-95 185-210 (329)
278 PRK06647 DNA polymerase III su 54.2 97 0.0021 33.8 10.4 22 71-92 41-62 (563)
279 CHL00095 clpC Clp protease ATP 54.1 21 0.00046 40.8 5.6 23 70-92 202-224 (821)
280 PHA00673 acetyltransferase dom 53.5 20 0.00043 31.8 4.1 45 346-390 87-134 (154)
281 PRK06731 flhF flagellar biosyn 52.8 1.6E+02 0.0035 28.7 10.7 56 346-402 154-214 (270)
282 COG4626 Phage terminase-like p 52.5 1E+02 0.0022 33.1 9.8 67 337-403 175-246 (546)
283 KOG0344|consensus 52.1 12 0.00026 39.9 2.9 39 323-361 261-303 (593)
284 PRK12727 flagellar biosynthesi 52.0 3E+02 0.0065 29.8 13.2 51 346-397 428-482 (559)
285 PRK14722 flhF flagellar biosyn 51.4 96 0.0021 31.9 9.2 52 346-398 215-271 (374)
286 COG0553 HepA Superfamily II DN 50.9 6.3 0.00014 45.2 0.7 89 25-131 333-425 (866)
287 KOG0780|consensus 49.8 56 0.0012 33.5 7.0 22 75-96 108-129 (483)
288 PRK09183 transposase/IS protei 49.6 75 0.0016 30.8 7.9 21 71-91 105-125 (259)
289 KOG1000|consensus 48.9 9 0.0002 40.1 1.4 84 11-183 179-264 (689)
290 KOG0952|consensus 48.8 35 0.00076 39.2 5.9 42 70-111 945-987 (1230)
291 PRK14954 DNA polymerase III su 48.7 1.3E+02 0.0028 33.3 10.3 22 71-92 41-62 (620)
292 PRK07993 DNA polymerase III su 47.7 1E+02 0.0022 31.1 8.8 48 30-93 2-49 (334)
293 TIGR03346 chaperone_ClpB ATP-d 47.3 37 0.0008 39.1 6.2 22 70-91 196-217 (852)
294 TIGR01547 phage_term_2 phage t 46.8 70 0.0015 33.0 7.8 38 347-386 102-142 (396)
295 PRK07471 DNA polymerase III su 46.1 2.3E+02 0.0051 29.0 11.2 24 71-94 44-67 (365)
296 PRK14963 DNA polymerase III su 45.9 1.4E+02 0.003 32.2 9.8 22 72-93 40-61 (504)
297 PRK14948 DNA polymerase III su 45.8 2.2E+02 0.0047 31.5 11.6 23 71-93 41-63 (620)
298 PRK13709 conjugal transfer nic 45.7 92 0.002 38.7 9.3 38 347-386 1063-1101(1747)
299 PRK10416 signal recognition pa 45.1 1.7E+02 0.0037 29.3 9.8 55 345-399 195-259 (318)
300 COG1199 DinG Rad3-related DNA 44.2 44 0.00095 37.1 6.1 70 28-117 13-83 (654)
301 COG3972 Superfamily I DNA and 43.8 1.4E+02 0.003 31.8 8.8 45 77-121 185-230 (660)
302 KOG1969|consensus 43.8 21 0.00046 39.4 3.2 29 57-85 315-343 (877)
303 COG1419 FlhF Flagellar GTP-bin 43.2 2.4E+02 0.0052 29.3 10.5 71 329-402 266-341 (407)
304 PRK11054 helD DNA helicase IV; 43.1 22 0.00047 39.7 3.4 51 72-122 213-266 (684)
305 COG0470 HolB ATPase involved i 43.0 79 0.0017 31.2 7.3 25 71-95 27-51 (325)
306 KOG0738|consensus 42.4 19 0.00042 36.7 2.6 49 68-121 245-293 (491)
307 PF01656 CbiA: CobQ/CobB/MinD/ 42.3 22 0.00047 32.2 2.8 28 75-104 6-33 (195)
308 KOG0950|consensus 42.2 98 0.0021 35.4 8.0 64 325-388 316-391 (1008)
309 COG1199 DinG Rad3-related DNA 41.9 21 0.00045 39.8 3.0 38 323-360 193-234 (654)
310 COG3973 Superfamily I DNA and 41.8 28 0.0006 37.6 3.7 43 75-117 233-279 (747)
311 TIGR01425 SRP54_euk signal rec 41.8 2.3E+02 0.0049 29.8 10.4 32 72-105 104-135 (429)
312 PF06068 TIP49: TIP49 C-termin 41.6 26 0.00056 35.7 3.3 37 68-107 50-86 (398)
313 KOG0925|consensus 41.1 20 0.00043 37.6 2.5 53 346-402 159-219 (699)
314 KOG1942|consensus 40.7 23 0.00051 34.7 2.7 27 66-92 62-88 (456)
315 TIGR02760 TraI_TIGR conjugativ 39.8 1.2E+02 0.0026 38.4 9.3 60 29-111 428-487 (1960)
316 PF01695 IstB_IS21: IstB-like 39.4 20 0.00044 32.5 2.1 26 70-95 49-74 (178)
317 PRK13235 nifH nitrogenase redu 39.4 23 0.00051 34.4 2.7 26 77-104 10-35 (274)
318 KOG0744|consensus 38.9 2.3E+02 0.0051 28.5 9.2 30 63-92 172-201 (423)
319 PRK08533 flagellar accessory p 38.7 53 0.0011 31.2 4.9 46 71-118 27-72 (230)
320 COG0552 FtsY Signal recognitio 38.5 2E+02 0.0043 29.0 8.8 55 345-400 220-285 (340)
321 PRK05973 replicative DNA helic 38.3 44 0.00096 31.9 4.3 47 71-119 67-113 (237)
322 KOG0332|consensus 38.0 1.4E+02 0.003 30.6 7.5 59 326-384 209-274 (477)
323 PRK10037 cell division protein 37.6 26 0.00057 33.6 2.7 32 71-104 5-36 (250)
324 COG3267 ExeA Type II secretory 37.6 24 0.00052 34.0 2.3 38 71-111 54-91 (269)
325 TIGR01281 DPOR_bchL light-inde 37.2 26 0.00057 33.9 2.6 26 77-104 9-34 (268)
326 PRK08116 hypothetical protein; 37.2 28 0.0006 34.0 2.8 44 69-114 115-158 (268)
327 PRK07952 DNA replication prote 36.8 47 0.001 31.9 4.2 44 70-119 101-144 (244)
328 PF12926 MOZART2: Mitotic-spin 36.7 51 0.0011 26.0 3.5 40 457-505 22-61 (88)
329 KOG0341|consensus 36.5 20 0.00044 36.3 1.6 81 77-168 216-308 (610)
330 TIGR02639 ClpA ATP-dependent C 36.3 1.2E+02 0.0025 34.4 7.9 23 70-92 205-227 (731)
331 TIGR03880 KaiC_arch_3 KaiC dom 36.2 57 0.0012 30.5 4.7 47 72-120 20-66 (224)
332 cd01129 PulE-GspE PulE/GspE Th 35.9 52 0.0011 32.0 4.4 23 71-93 83-105 (264)
333 PRK13230 nitrogenase reductase 35.3 28 0.00061 34.0 2.5 25 78-104 11-35 (279)
334 PRK10867 signal recognition pa 35.3 2E+02 0.0043 30.2 8.9 34 71-105 103-136 (433)
335 TIGR02655 circ_KaiC circadian 35.3 69 0.0015 34.2 5.6 33 71-105 266-298 (484)
336 COG1702 PhoH Phosphate starvat 35.1 21 0.00046 35.8 1.5 39 347-388 244-283 (348)
337 PRK04195 replication factor C 35.1 1.7E+02 0.0037 31.2 8.6 22 69-90 40-61 (482)
338 TIGR01287 nifH nitrogenase iro 34.9 30 0.00064 33.7 2.6 25 78-104 10-34 (275)
339 TIGR00708 cobA cob(I)alamin ad 34.4 50 0.0011 29.9 3.7 54 340-393 91-148 (173)
340 COG1192 Soj ATPases involved i 34.2 31 0.00067 33.1 2.6 28 75-103 10-37 (259)
341 cd02037 MRP-like MRP (Multiple 34.2 40 0.00088 30.0 3.2 52 346-401 67-118 (169)
342 KOG0740|consensus 33.8 23 0.0005 36.8 1.6 51 66-121 184-234 (428)
343 PRK13185 chlL protochlorophyll 33.2 34 0.00074 33.1 2.7 27 76-104 10-36 (270)
344 CHL00072 chlL photochlorophyll 33.2 34 0.00074 33.7 2.7 25 78-104 10-34 (290)
345 PF06745 KaiC: KaiC; InterPro 33.1 58 0.0012 30.5 4.2 49 71-120 22-70 (226)
346 TIGR00347 bioD dethiobiotin sy 32.9 30 0.00065 30.7 2.1 24 73-96 3-26 (166)
347 PRK05986 cob(I)alamin adenolsy 32.4 50 0.0011 30.4 3.4 57 340-396 109-169 (191)
348 COG0464 SpoVK ATPases of the A 32.3 29 0.00063 37.1 2.2 76 30-121 249-324 (494)
349 COG1224 TIP49 DNA helicase TIP 32.2 28 0.0006 35.2 1.8 25 68-92 65-89 (450)
350 PF13500 AAA_26: AAA domain; P 31.7 32 0.0007 31.6 2.2 25 72-96 5-29 (199)
351 cd02117 NifH_like This family 31.3 39 0.00085 31.4 2.7 27 76-104 8-34 (212)
352 TIGR01969 minD_arch cell divis 31.1 39 0.00085 32.0 2.7 27 76-104 9-35 (251)
353 PRK13232 nifH nitrogenase redu 31.1 39 0.00084 32.9 2.7 26 77-104 10-35 (273)
354 PRK13236 nitrogenase reductase 31.1 40 0.00086 33.4 2.8 25 78-104 16-40 (296)
355 cd02036 MinD Bacterial cell di 30.9 41 0.00089 29.9 2.7 29 74-104 6-34 (179)
356 KOG0739|consensus 30.6 1.5E+02 0.0033 29.4 6.4 117 68-189 166-296 (439)
357 PRK07414 cob(I)yrinic acid a,c 30.6 73 0.0016 29.0 4.1 54 341-397 110-167 (178)
358 cd02032 Bchl_like This family 30.6 41 0.00088 32.5 2.7 25 78-104 10-34 (267)
359 PRK14721 flhF flagellar biosyn 30.4 3E+02 0.0066 28.8 9.1 56 346-402 269-329 (420)
360 PRK14723 flhF flagellar biosyn 30.1 2.6E+02 0.0057 31.6 9.1 51 346-397 263-318 (767)
361 KOG0327|consensus 29.7 96 0.0021 31.6 5.1 61 325-385 146-211 (397)
362 COG0003 ArsA Predicted ATPase 29.6 42 0.00091 33.7 2.7 25 78-104 12-36 (322)
363 PF13177 DNA_pol3_delta2: DNA 29.6 65 0.0014 28.6 3.7 25 72-96 23-47 (162)
364 TIGR02760 TraI_TIGR conjugativ 29.5 1.7E+02 0.0037 37.2 8.2 37 347-385 1113-1150(1960)
365 cd02040 NifH NifH gene encodes 29.5 42 0.00092 32.3 2.7 25 78-104 11-35 (270)
366 PF07015 VirC1: VirC1 protein; 29.5 52 0.0011 31.3 3.1 38 78-117 12-51 (231)
367 cd00561 CobA_CobO_BtuR ATP:cor 29.2 60 0.0013 29.0 3.3 52 341-392 90-145 (159)
368 cd02042 ParA ParA and ParB of 29.2 53 0.0011 26.3 2.8 30 73-104 5-34 (104)
369 PF05127 Helicase_RecD: Helica 29.2 48 0.001 30.1 2.7 33 346-384 90-123 (177)
370 PRK10818 cell division inhibit 28.4 45 0.00098 32.2 2.6 53 342-400 109-161 (270)
371 KOG0924|consensus 28.4 34 0.00074 37.5 1.8 49 346-394 468-520 (1042)
372 COG2109 BtuR ATP:corrinoid ade 28.4 1.1E+02 0.0023 28.2 4.7 58 340-397 116-177 (198)
373 COG3421 Uncharacterized protei 28.4 42 0.00092 36.2 2.5 40 76-115 5-44 (812)
374 PRK13234 nifH nitrogenase redu 28.2 45 0.00098 33.0 2.6 27 76-104 12-38 (295)
375 TIGR03371 cellulose_yhjQ cellu 28.1 48 0.001 31.4 2.7 29 73-103 7-35 (246)
376 PRK13231 nitrogenase reductase 28.0 33 0.00071 33.1 1.6 26 76-104 10-35 (264)
377 TIGR02782 TrbB_P P-type conjug 27.5 54 0.0012 32.5 3.0 25 70-94 134-158 (299)
378 PRK10919 ATP-dependent DNA hel 27.2 47 0.001 37.1 2.8 49 72-120 19-70 (672)
379 TIGR03881 KaiC_arch_4 KaiC dom 26.9 1E+02 0.0022 28.9 4.7 43 72-116 24-66 (229)
380 KOG0351|consensus 26.7 52 0.0011 38.0 3.0 82 324-405 356-451 (941)
381 PF07726 AAA_3: ATPase family 26.5 24 0.00052 30.3 0.3 21 72-92 3-23 (131)
382 TIGR02688 conserved hypothetic 25.4 1.8E+02 0.0038 30.6 6.2 17 346-362 260-276 (449)
383 PF02374 ArsA_ATPase: Anion-tr 25.3 57 0.0012 32.5 2.7 26 78-105 11-36 (305)
384 cd01983 Fer4_NifH The Fer4_Nif 25.3 75 0.0016 24.4 3.0 19 77-95 8-26 (99)
385 PRK13233 nifH nitrogenase redu 25.2 55 0.0012 31.8 2.6 26 78-104 12-37 (275)
386 cd03111 CpaE_like This protein 25.1 71 0.0015 26.0 2.9 22 74-95 6-27 (106)
387 PHA02519 plasmid partition pro 25.0 58 0.0013 33.7 2.8 32 71-104 110-141 (387)
388 PRK07994 DNA polymerase III su 25.0 69 0.0015 35.5 3.5 21 72-92 42-62 (647)
389 PRK09112 DNA polymerase III su 24.8 76 0.0016 32.3 3.6 44 35-94 28-71 (351)
390 PRK00090 bioD dithiobiotin syn 24.7 49 0.0011 30.9 2.1 26 72-97 4-29 (222)
391 PF12846 AAA_10: AAA-like doma 24.3 93 0.002 30.1 4.1 43 71-115 4-46 (304)
392 PRK12724 flagellar biosynthesi 24.1 3.3E+02 0.0071 28.6 8.0 57 345-402 298-362 (432)
393 cd01125 repA Hexameric Replica 23.9 71 0.0015 30.3 3.0 36 71-106 4-49 (239)
394 PHA02518 ParA-like protein; Pr 23.8 72 0.0016 29.2 3.0 37 77-115 10-48 (211)
395 PRK12374 putative dithiobiotin 23.5 55 0.0012 31.0 2.2 25 72-96 7-31 (231)
396 PF05729 NACHT: NACHT domain 23.5 82 0.0018 27.2 3.2 27 71-97 3-29 (166)
397 PRK13705 plasmid-partitioning 23.4 61 0.0013 33.5 2.6 41 71-113 110-153 (388)
398 cd03110 Fer4_NifH_child This p 23.3 59 0.0013 29.1 2.3 20 73-92 5-24 (179)
399 PRK08451 DNA polymerase III su 23.2 82 0.0018 34.0 3.6 21 72-92 40-60 (535)
400 PF02572 CobA_CobO_BtuR: ATP:c 23.2 69 0.0015 29.0 2.6 55 341-398 91-149 (172)
401 PLN00020 ribulose bisphosphate 23.1 41 0.00089 34.5 1.2 50 66-120 146-195 (413)
402 PF01637 Arch_ATPase: Archaeal 22.9 99 0.0021 28.5 3.8 37 348-384 120-165 (234)
403 cd03115 SRP The signal recogni 22.8 83 0.0018 28.0 3.1 24 72-95 4-27 (173)
404 KOG0731|consensus 22.7 45 0.00097 37.4 1.5 24 66-89 342-365 (774)
405 TIGR00150 HI0065_YjeE ATPase, 22.7 73 0.0016 27.5 2.5 22 71-92 25-46 (133)
406 PF13481 AAA_25: AAA domain; P 22.6 1.3E+02 0.0029 27.0 4.6 51 71-121 35-93 (193)
407 TIGR02016 BchX chlorophyllide 22.2 69 0.0015 31.7 2.6 26 77-104 9-34 (296)
408 PRK13869 plasmid-partitioning 22.2 71 0.0015 33.2 2.8 32 71-104 125-156 (405)
409 PRK10923 glnG nitrogen regulat 22.0 9.2E+02 0.02 25.2 12.5 19 70-88 163-181 (469)
410 KOG0333|consensus 21.9 3.2E+02 0.007 29.4 7.3 36 324-359 372-409 (673)
411 TIGR03453 partition_RepA plasm 21.9 71 0.0015 32.9 2.8 32 71-104 108-139 (387)
412 TIGR01968 minD_bact septum sit 21.7 73 0.0016 30.3 2.7 49 346-400 111-159 (261)
413 PF01352 KRAB: KRAB box; Inte 21.5 85 0.0018 21.0 2.1 19 457-475 17-35 (41)
414 PF08303 tRNA_lig_kinase: tRNA 21.4 48 0.001 29.7 1.1 49 347-396 55-111 (168)
415 PF02702 KdpD: Osmosensitive K 21.2 69 0.0015 29.8 2.2 25 72-96 9-33 (211)
416 PRK08939 primosomal protein Dn 21.1 66 0.0014 32.0 2.3 28 69-96 157-184 (306)
417 PRK00901 methylated-DNA--prote 20.9 1E+02 0.0022 27.4 3.1 32 71-108 94-125 (155)
418 TIGR03877 thermo_KaiC_1 KaiC d 20.9 1.5E+02 0.0033 28.1 4.6 46 71-118 24-69 (237)
419 KOG0737|consensus 20.8 1.1E+02 0.0024 31.2 3.6 50 67-121 126-175 (386)
420 PRK13833 conjugal transfer pro 20.8 86 0.0019 31.5 3.0 23 71-93 147-169 (323)
421 PRK14951 DNA polymerase III su 20.7 96 0.0021 34.2 3.5 21 72-92 42-62 (618)
422 PRK07764 DNA polymerase III su 20.6 1.2E+02 0.0026 34.8 4.4 21 72-92 41-61 (824)
423 COG0467 RAD55 RecA-superfamily 20.4 1.5E+02 0.0033 28.4 4.6 47 71-119 26-72 (260)
424 PRK06067 flagellar accessory p 20.3 1.6E+02 0.0034 27.7 4.6 48 71-120 28-75 (234)
425 TIGR03499 FlhF flagellar biosy 20.2 91 0.002 30.6 3.0 33 73-105 199-231 (282)
426 TIGR02974 phageshock_pspF psp 20.2 8.8E+02 0.019 24.3 11.9 49 348-398 95-164 (329)
427 KOG2383|consensus 20.1 97 0.0021 32.0 3.1 22 67-88 113-134 (467)
428 TIGR03878 thermo_KaiC_2 KaiC d 20.1 96 0.0021 30.0 3.1 33 71-105 39-71 (259)
No 1
>KOG0384|consensus
Probab=100.00 E-value=1e-55 Score=472.30 Aligned_cols=312 Identities=54% Similarity=1.006 Sum_probs=285.6
Q ss_pred CCCCCCCCCccccCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHH
Q psy14708 8 KKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLT 87 (513)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~ia 87 (513)
...+....|.+++.+|.+..+.+||+||++|++||+..|-++.+ ||||||||||||+++|+
T Consensus 348 ~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n-------------------~ILADEmgLgktvqti~ 408 (1373)
T KOG0384|consen 348 KYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNN-------------------CILADEMGLGKTVQTIT 408 (1373)
T ss_pred ccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhccc-------------------ceehhhcCCCcchHHHH
Confidence 34567778999999999999999999999999999999987765 55666677799999999
Q ss_pred HHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEe
Q psy14708 88 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIA 167 (513)
Q Consensus 88 li~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~ 167 (513)
++.++...+ ...||+||||
T Consensus 409 fl~~l~~~~-------------------------------------------------------------~~~gpflvvv 427 (1373)
T KOG0384|consen 409 FLSYLFHSL-------------------------------------------------------------QIHGPFLVVV 427 (1373)
T ss_pred HHHHHHHhh-------------------------------------------------------------hccCCeEEEe
Confidence 998776553 2458999999
Q ss_pred cCCCccchHHHHHhhcCceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchh
Q psy14708 168 PLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWK 247 (513)
Q Consensus 168 P~sll~qW~~E~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (513)
|.|++.+|++|+..|+++++++|+|.
T Consensus 428 plst~~~W~~ef~~w~~mn~i~y~g~------------------------------------------------------ 453 (1373)
T KOG0384|consen 428 PLSTITAWEREFETWTDMNVIVYHGN------------------------------------------------------ 453 (1373)
T ss_pred ehhhhHHHHHHHHHHhhhceeeeecc------------------------------------------------------
Confidence 99999999999999999999999998
Q ss_pred hhhcccccccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcE
Q psy14708 248 EFLANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHV 327 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 327 (513)
..+|..+++|++..... ....+|++
T Consensus 454 ------------------------------------------------~~sr~~i~~ye~~~~~~-------~~~lkf~~ 478 (1373)
T KOG0384|consen 454 ------------------------------------------------LESRQLIRQYEFYHSSN-------TKKLKFNA 478 (1373)
T ss_pred ------------------------------------------------hhHHHHHHHHHheecCC-------ccccccce
Confidence 55677888888776654 23457999
Q ss_pred EEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCh
Q psy14708 328 LITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNN 407 (513)
Q Consensus 328 vitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~ 407 (513)
+||||+.+..+...|..++|..++|||||++||..+..+..+..++..+|+++||||+||++.|||++++||.|+.|..+
T Consensus 479 lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~ 558 (1373)
T KOG0384|consen 479 LLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSW 558 (1373)
T ss_pred eehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChh
Q psy14708 408 EAFMSEFGQLKTESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVP 487 (513)
Q Consensus 408 ~~f~~~~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~ 487 (513)
..|...| ...+...+..|+.+|.|+|+||.++||.+.||++.|.++.|+||+.|+.+|+.|+.+++..|.+|..+.+ +
T Consensus 559 ~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~-~ 636 (1373)
T KOG0384|consen 559 DEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-P 636 (1373)
T ss_pred HHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCC-c
Confidence 9999999 5567788999999999999999999999999999999999999999999999999999999999998877 8
Q ss_pred HHHHHHHHHHHhcCCCCCcCCCc
Q psy14708 488 NLMNTMMELRKCCIHPYLLNGKT 510 (513)
Q Consensus 488 ~~l~~l~~LRq~c~HP~L~~~~~ 510 (513)
.++++++.||+|||||||+++++
T Consensus 637 ~lLNimmELkKccNHpyLi~gae 659 (1373)
T KOG0384|consen 637 SLLNIMMELKKCCNHPYLIKGAE 659 (1373)
T ss_pred hHHHHHHHHHHhcCCccccCcHH
Confidence 89999999999999999999875
No 2
>KOG0385|consensus
Probab=100.00 E-value=4.6e-55 Score=448.10 Aligned_cols=293 Identities=48% Similarity=0.808 Sum_probs=255.7
Q ss_pred CCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCe
Q psy14708 22 SPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPF 101 (513)
Q Consensus 22 ~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~ 101 (513)
+|.+..+.+|||||++|++||...+.++- +||||||||+|||+|+|+++.++...
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engi-------------------ngILaDEMGLGKTlQtIs~l~yl~~~------ 213 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGI-------------------NGILADEMGLGKTLQTISLLGYLKGR------ 213 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCc-------------------ccEeehhcccchHHHHHHHHHHHHHh------
Confidence 78888889999999999999998777554 37788888889999999999877542
Q ss_pred EEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHh
Q psy14708 102 LVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 181 (513)
Q Consensus 102 liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~ 181 (513)
.+..||+||+||.|+++||.+||.+
T Consensus 214 -------------------------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 214 -------------------------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred -------------------------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 2346889999999999999999999
Q ss_pred hc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCch
Q psy14708 182 WT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWT 260 (513)
Q Consensus 182 ~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
|+ ++++++|+|....+....++.+
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~------------------------------------------------------- 263 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIM------------------------------------------------------- 263 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhh-------------------------------------------------------
Confidence 98 9999999998654433322111
Q ss_pred hHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchh
Q psy14708 261 EEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCL 340 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~ 340 (513)
....|+|++|||+...++..
T Consensus 264 ------------------------------------------------------------~~~~fdV~iTsYEi~i~dk~ 283 (971)
T KOG0385|consen 264 ------------------------------------------------------------LPGRFDVCITSYEIAIKDKS 283 (971)
T ss_pred ------------------------------------------------------------ccCCCceEeehHHHHHhhHH
Confidence 22379999999999999999
Q ss_pred hhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCc---
Q psy14708 341 ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL--- 417 (513)
Q Consensus 341 ~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~--- 417 (513)
.|..++|..+||||||++||.++..++.++.+...+|+++||||+||++.|||++++||-|+.|++.+.|.+.|...
T Consensus 284 ~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~ 363 (971)
T KOG0385|consen 284 FLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCE 363 (971)
T ss_pred HHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888653
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHHHHHHH
Q psy14708 418 KTESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELR 497 (513)
Q Consensus 418 ~~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~l~~LR 497 (513)
.+.....+|+.++++|++||.|.+|.+.|||+.+..++|.||+.|++.|..++......+...... ....+.+++|.||
T Consensus 364 ~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~-~k~kL~NI~mQLR 442 (971)
T KOG0385|consen 364 GDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKG-EKTKLQNIMMQLR 442 (971)
T ss_pred cCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccc-hhhHHHHHHHHHH
Confidence 344568899999999999999999999999999999999999999999999999988776554432 3677899999999
Q ss_pred HhcCCCCCcCCCc
Q psy14708 498 KCCIHPYLLNGKT 510 (513)
Q Consensus 498 q~c~HP~L~~~~~ 510 (513)
+||+||||+.+++
T Consensus 443 KccnHPYLF~g~e 455 (971)
T KOG0385|consen 443 KCCNHPYLFDGAE 455 (971)
T ss_pred HhcCCccccCCCC
Confidence 9999999999864
No 3
>KOG0387|consensus
Probab=100.00 E-value=1.6e-50 Score=416.81 Aligned_cols=182 Identities=33% Similarity=0.536 Sum_probs=160.1
Q ss_pred cCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 323 YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
.+-.|++|||+.+......+..+.|+.||+||+|+|||+++..+.+|.+++..+|++|||||+||++.|||+++.|+.|+
T Consensus 314 ~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG 393 (923)
T KOG0387|consen 314 TDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPG 393 (923)
T ss_pred ccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCC
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhcCcccH---------------HHHHHHHHHHHHHHHHHhHHHHhh-cCCCceEEEEEecCCHHHHHHH
Q psy14708 403 QFSNNEAFMSEFGQLKTE---------------SEVNKLQLLLKPMMLRRLKEDVEK-SIAPKEETVVEVELTNIQKKYY 466 (513)
Q Consensus 403 ~~~~~~~f~~~~~~~~~~---------------~~~~~l~~~l~~~~~rrtk~~v~~-~LP~~~~~~i~v~ls~~q~~~Y 466 (513)
.+++...|.+.|..+.+. ...-.|+.++++|++||+|+||.. .||.+.++|+.|.||+.|+.+|
T Consensus 394 ~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y 473 (923)
T KOG0387|consen 394 KLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLY 473 (923)
T ss_pred cccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHH
Confidence 999999999999765432 224479999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHh-hhhhcCCCCCChhHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 467 RGILERNF-SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 467 ~~l~~~~~-~~l~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
+++++... ..+-.+. ...+..+.-||++||||.|+...
T Consensus 474 ~~fl~s~~v~~i~ng~-----~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 474 QRFLNSSEVNKILNGK-----RNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhhhHHHHHHHcCC-----ccceechHHHHhhcCCcccccCc
Confidence 99988742 2222222 22456677899999999999874
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.2e-50 Score=444.31 Aligned_cols=294 Identities=43% Similarity=0.756 Sum_probs=242.4
Q ss_pred ccccCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 17 ~~~~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~ 96 (513)
..+..+|.... .+|||||++|++||+..+.++ .|||||||||+|||+++|+++..+....
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g-------------------~gGILADEMGLGKTlQaIalL~~L~~~~ 216 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENG-------------------INGILADEMGLGKTLQTISLLGYLHEYR 216 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcC-------------------CCEEEEeCCCccHHHHHHHHHHHHHHhc
Confidence 34555676655 699999999999998765433 2488999999999999999987664321
Q ss_pred CCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchH
Q psy14708 97 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQ 176 (513)
Q Consensus 97 ~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~ 176 (513)
...+|+|||||.+++.||.
T Consensus 217 -------------------------------------------------------------~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 217 -------------------------------------------------------------GITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred -------------------------------------------------------------CCCCCEEEEeChHHHHHHH
Confidence 2346777777777777777
Q ss_pred HHHHhhc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhccccc
Q psy14708 177 REFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEF 255 (513)
Q Consensus 177 ~E~~~~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
+||.+|+ .++++.|+|....+.....
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~----------------------------------------------------- 262 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQRE----------------------------------------------------- 262 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHH-----------------------------------------------------
Confidence 7777776 6788889886432111000
Q ss_pred ccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHH
Q psy14708 256 RNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEII 335 (513)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~ 335 (513)
. ......++|++|||+.+
T Consensus 263 -------------------------------------------------~-------------~~~~~~~dVvITSYe~l 280 (1033)
T PLN03142 263 -------------------------------------------------E-------------LLVAGKFDVCVTSFEMA 280 (1033)
T ss_pred -------------------------------------------------H-------------HhcccCCCcceecHHHH
Confidence 0 00123578999999999
Q ss_pred HhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhc
Q psy14708 336 ISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG 415 (513)
Q Consensus 336 ~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~ 415 (513)
.++...|..++|++||+||||++||.++..++++..+++.+||+|||||++|++.|||++++||.|+.|++...|...|.
T Consensus 281 ~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~ 360 (1033)
T PLN03142 281 IKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ 360 (1033)
T ss_pred HHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ccc---cHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHH
Q psy14708 416 QLK---TESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNT 492 (513)
Q Consensus 416 ~~~---~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~ 492 (513)
... .......|+.++++|++||+|.+|..+|||+.+.++.|.||+.|+.+|+.++....+.+..+. ....+++.
T Consensus 361 ~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~---~~~~Llni 437 (1033)
T PLN03142 361 ISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGG---ERKRLLNI 437 (1033)
T ss_pred cccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccc---cHHHHHHH
Confidence 532 344577899999999999999999999999999999999999999999999998777665443 34568899
Q ss_pred HHHHHHhcCCCCCcCCC
Q psy14708 493 MMELRKCCIHPYLLNGK 509 (513)
Q Consensus 493 l~~LRq~c~HP~L~~~~ 509 (513)
+++||+||+||+|+.+.
T Consensus 438 lmqLRk~cnHP~L~~~~ 454 (1033)
T PLN03142 438 AMQLRKCCNHPYLFQGA 454 (1033)
T ss_pred HHHHHHHhCCHHhhhcc
Confidence 99999999999998754
No 5
>KOG0391|consensus
Probab=100.00 E-value=1.6e-49 Score=418.55 Aligned_cols=288 Identities=36% Similarity=0.624 Sum_probs=248.4
Q ss_pred cCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 26 KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 26 ~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
.....||.||+.|+.||..++.++.+ ||||||||+|||+++|+|++.+-
T Consensus 611 LLrGqLReYQkiGLdWLatLYeknlN-------------------GILADEmGLGKTIQtISllAhLA------------ 659 (1958)
T KOG0391|consen 611 LLRGQLREYQKIGLDWLATLYEKNLN-------------------GILADEMGLGKTIQTISLLAHLA------------ 659 (1958)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccc-------------------ceehhhhcccchhHHHHHHHHHH------------
Confidence 33479999999999999988776643 66777777899999999986652
Q ss_pred CCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhc-C
Q psy14708 106 PLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-D 184 (513)
Q Consensus 106 P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~-~ 184 (513)
...+..||+|||||.+.+.||+-|+++|+ +
T Consensus 660 -------------------------------------------------CeegnWGPHLIVVpTsviLnWEMElKRwcPg 690 (1958)
T KOG0391|consen 660 -------------------------------------------------CEEGNWGPHLIVVPTSVILNWEMELKRWCPG 690 (1958)
T ss_pred -------------------------------------------------hcccCCCCceEEeechhhhhhhHHHhhhCCc
Confidence 12345689999999999999999999998 9
Q ss_pred ceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHHH
Q psy14708 185 LNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYV 264 (513)
Q Consensus 185 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (513)
++++.|+|..+.++...+ +
T Consensus 691 lKILTYyGs~kErkeKRq-------------------------------------------------------g------ 709 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQ-------------------------------------------------------G------ 709 (1958)
T ss_pred ceEeeecCCHHHHHHHhh-------------------------------------------------------c------
Confidence 999999998765433221 1
Q ss_pred HHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchhhhcc
Q psy14708 265 EELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKD 344 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~~l~~ 344 (513)
...-..|+|.||||..+.++...|.+
T Consensus 710 ------------------------------------------------------W~kPnaFHVCItSYklv~qd~~AFkr 735 (1958)
T KOG0391|consen 710 ------------------------------------------------------WAKPNAFHVCITSYKLVFQDLTAFKR 735 (1958)
T ss_pred ------------------------------------------------------ccCCCeeEEeehhhHHHHhHHHHHHh
Confidence 12345789999999999999999999
Q ss_pred ccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCccc-----
Q psy14708 345 FNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKT----- 419 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~~~----- 419 (513)
.+|..+|+||||+|||.++..++++..+++.+|++|||||++|++.|||++++||.|..|.+.+.|+..|+++-+
T Consensus 736 krWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEg 815 (1958)
T KOG0391|consen 736 KRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEG 815 (1958)
T ss_pred hccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred -----HHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHHHH
Q psy14708 420 -----ESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494 (513)
Q Consensus 420 -----~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~l~ 494 (513)
...+.+|++++++|++||+|.||.++||.+.||++.|.||..|+.+|+++..+... .....+.+...++++||
T Consensus 816 sqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~T--KetLkSGhfmsVlnilm 893 (1958)
T KOG0391|consen 816 SQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGT--KETLKSGHFMSVLNILM 893 (1958)
T ss_pred chhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccch--hhHhhcCchhHHHHHHH
Confidence 34477999999999999999999999999999999999999999999998877421 22233457888999999
Q ss_pred HHHHhcCCCCCcCCCc
Q psy14708 495 ELRKCCIHPYLLNGKT 510 (513)
Q Consensus 495 ~LRq~c~HP~L~~~~~ 510 (513)
+||+|||||.|+...-
T Consensus 894 qLrKvCNHPnLfEpRp 909 (1958)
T KOG0391|consen 894 QLRKVCNHPNLFEPRP 909 (1958)
T ss_pred HHHHHcCCCCcCCCCC
Confidence 9999999999998654
No 6
>KOG0389|consensus
Probab=100.00 E-value=3.5e-47 Score=391.64 Aligned_cols=291 Identities=37% Similarity=0.605 Sum_probs=228.8
Q ss_pred cCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCC
Q psy14708 20 EKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRG 99 (513)
Q Consensus 20 ~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~ 99 (513)
++|+.+..+.+|+|||+-||+|+.-++.++. .||||||||+|||+|+||+++++.+.|..
T Consensus 389 ~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l-------------------~gILADEMGLGKTiQvIaFlayLkq~g~~- 448 (941)
T KOG0389|consen 389 EQPKLLSSGIQLKDYQLVGVNWLLLLYKKKL-------------------NGILADEMGLGKTIQVIAFLAYLKQIGNP- 448 (941)
T ss_pred cCccccCCCCcccchhhhhHHHHHHHHHccc-------------------cceehhhccCcchhHHHHHHHHHHHcCCC-
Confidence 3555677889999999999999986555443 26888888889999999999999888754
Q ss_pred CeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHH
Q psy14708 100 PFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREF 179 (513)
Q Consensus 100 ~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~ 179 (513)
||+|||||.|++.||.+|+
T Consensus 449 -------------------------------------------------------------gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 449 -------------------------------------------------------------GPHLVVVPSSTLENWLREF 467 (941)
T ss_pred -------------------------------------------------------------CCcEEEecchhHHHHHHHH
Confidence 5566666666666666666
Q ss_pred Hhhc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccC
Q psy14708 180 EAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNG 258 (513)
Q Consensus 180 ~~~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
++|+ .++|..|+|....+...
T Consensus 468 ~kwCPsl~Ve~YyGSq~ER~~l---------------------------------------------------------- 489 (941)
T KOG0389|consen 468 AKWCPSLKVEPYYGSQDERREL---------------------------------------------------------- 489 (941)
T ss_pred HHhCCceEEEeccCcHHHHHHH----------------------------------------------------------
Confidence 6666 88999999974321110
Q ss_pred chhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHh-
Q psy14708 259 WTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIIS- 337 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~- 337 (513)
.+. + .+....|||++|||..+..
T Consensus 490 --------------------------------------------R~~-----------i-~~~~~~ydVllTTY~la~~~ 513 (941)
T KOG0389|consen 490 --------------------------------------------RER-----------I-KKNKDDYDVLLTTYNLAASS 513 (941)
T ss_pred --------------------------------------------HHH-----------H-hccCCCccEEEEEeecccCC
Confidence 000 0 0123489999999998876
Q ss_pred --chhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCC-hHHHHHHh
Q psy14708 338 --DCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSN-NEAFMSEF 414 (513)
Q Consensus 338 --~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~-~~~f~~~~ 414 (513)
+...|..++|+.||.||+|++||.+|.+++.+..+.|++|++|||||+||++.||++++.|+-|+.|.. -.++...|
T Consensus 514 kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if 593 (941)
T KOG0389|consen 514 KDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIF 593 (941)
T ss_pred hHHHHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999998875 35666666
Q ss_pred cCccc-----------HHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCC
Q psy14708 415 GQLKT-----------ESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTS 483 (513)
Q Consensus 415 ~~~~~-----------~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~ 483 (513)
....+ ...+.+...++.||++||.|++|.++|||+..++..|+|+..|+.+|+.+.+.....+..-...
T Consensus 594 ~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n 673 (941)
T KOG0389|consen 594 KAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN 673 (941)
T ss_pred hccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc
Confidence 54332 3457788889999999999999999999999999999999999999999988873221111111
Q ss_pred CChhHHHHHHHHHHHhcCCCCCc
Q psy14708 484 ANVPNLMNTMMELRKCCIHPYLL 506 (513)
Q Consensus 484 ~~~~~~l~~l~~LRq~c~HP~L~ 506 (513)
..... -+.|++||++++||-|+
T Consensus 674 s~~~~-~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 674 SELKS-GNVLMQLRKAANHPLLF 695 (941)
T ss_pred ccccc-chHHHHHHHHhcChhHH
Confidence 11111 45899999999999775
No 7
>KOG4439|consensus
Probab=100.00 E-value=5.8e-48 Score=392.52 Aligned_cols=291 Identities=29% Similarity=0.488 Sum_probs=237.6
Q ss_pred CCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 27 NDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 27 ~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
..+.|.|||+.|++||.+++.+. ..||||||+||+|||.++|++|+..........
T Consensus 322 ~~v~LmpHQkaal~Wl~wRE~q~------------------~~GGILaddmGLGKTlsmislil~qK~~~~~~~------ 377 (901)
T KOG4439|consen 322 LKVELMPHQKAALRWLLWRESQP------------------PSGGILADDMGLGKTLSMISLILHQKAARKARE------ 377 (901)
T ss_pred ceeecchhhhhhhhhhcccccCC------------------CCCcccccccccccchHHHHHHHHHHHHHHhhc------
Confidence 34889999999999999766644 467999999999999999999977644321000
Q ss_pred CCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhc---
Q psy14708 107 LSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT--- 183 (513)
Q Consensus 107 ~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~--- 183 (513)
-......+||||||.+++.||..|+.+-.
T Consensus 378 ------------------------------------------------~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n 409 (901)
T KOG4439|consen 378 ------------------------------------------------KKGESASKTLIICPASLIHQWEAEVARRLEQN 409 (901)
T ss_pred ------------------------------------------------ccccccCCeEEeCcHHHHHHHHHHHHHHHhhc
Confidence 00111225999999999999999999876
Q ss_pred CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHH
Q psy14708 184 DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEY 263 (513)
Q Consensus 184 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
.++|++|||+.+.
T Consensus 410 ~LsV~~~HG~n~r------------------------------------------------------------------- 422 (901)
T KOG4439|consen 410 ALSVYLYHGPNKR------------------------------------------------------------------- 422 (901)
T ss_pred ceEEEEecCCccc-------------------------------------------------------------------
Confidence 6899999998631
Q ss_pred HHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhc-----
Q psy14708 264 VEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISD----- 338 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~----- 338 (513)
.+.+..+..||||||||..+.+.
T Consensus 423 ----------------------------------------------------~i~~~~L~~YDvViTTY~lva~~~~~e~ 450 (901)
T KOG4439|consen 423 ----------------------------------------------------EISAKELRKYDVVITTYNLVANKPDDEL 450 (901)
T ss_pred ----------------------------------------------------cCCHHHHhhcceEEEeeeccccCCchhh
Confidence 13344678899999999988772
Q ss_pred -----hhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHH
Q psy14708 339 -----CLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSE 413 (513)
Q Consensus 339 -----~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~ 413 (513)
...|..+.|.|||+||||.+||.+++.+.|+..|.+..||||||||++|+..|+|+++.||+..+|+++..|.+.
T Consensus 451 ~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~ 530 (901)
T KOG4439|consen 451 EEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKEN 530 (901)
T ss_pred hcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHh
Confidence 345888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCcccHHHHHHHHHHHHHHHHHHhHHHHhh-----cCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhc---------
Q psy14708 414 FGQLKTESEVNKLQLLLKPMMLRRLKEDVEK-----SIAPKEETVVEVELTNIQKKYYRGILERNFSFLSK--------- 479 (513)
Q Consensus 414 ~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~~-----~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~--------- 479 (513)
.... .....+++.-+.+++|+||||++... .||.+..+++.++|+..|...|+-+.+.+...+.+
T Consensus 531 i~~~-s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~ 609 (901)
T KOG4439|consen 531 IDNM-SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRN 609 (901)
T ss_pred ccCc-cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 7643 33445688888999999999999765 69999999999999999999999988776555432
Q ss_pred ---C----------------------------CCCCChhHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 480 ---G----------------------------TTSANVPNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 480 ---~----------------------------~~~~~~~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
+ ......+.++..|+||||+||||.+.+.+
T Consensus 610 ~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ 670 (901)
T KOG4439|consen 610 NDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAA 670 (901)
T ss_pred cccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccc
Confidence 0 11112355899999999999999887654
No 8
>KOG0392|consensus
Probab=100.00 E-value=8.6e-47 Score=402.19 Aligned_cols=288 Identities=34% Similarity=0.560 Sum_probs=236.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
.+||.||.+||+|+..... .++ -|||||+||+|||.|+|..++.-.-....
T Consensus 974 a~LRkYQqEGVnWLaFLnk----------y~L---------HGILcDDMGLGKTLQticilAsd~y~r~s---------- 1024 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNK----------YKL---------HGILCDDMGLGKTLQTICILASDHYKRRS---------- 1024 (1549)
T ss_pred HHHHHHHHhccHHHHHHHH----------hcc---------cceeeccccccHHHHHHHHHHHHHHhhcc----------
Confidence 6899999999999974332 222 28999999999999999988654322100
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhc-Ccee
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNV 187 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~-~l~~ 187 (513)
+.. .-..-|.|||||.+|..+|+.|+.+|. -+++
T Consensus 1025 -------~~~--------------------------------------e~~~~PSLIVCPsTLtGHW~~E~~kf~pfL~v 1059 (1549)
T KOG0392|consen 1025 -------ESS--------------------------------------EFNRLPSLIVCPSTLTGHWKSEVKKFFPFLKV 1059 (1549)
T ss_pred -------cch--------------------------------------hhccCCeEEECCchhhhHHHHHHHHhcchhhh
Confidence 000 012357899999999999999999987 5689
Q ss_pred EEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHHHHHH
Q psy14708 188 IVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEEL 267 (513)
Q Consensus 188 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
..|.|+...+...
T Consensus 1060 ~~yvg~p~~r~~l------------------------------------------------------------------- 1072 (1549)
T KOG0392|consen 1060 LQYVGPPAERREL------------------------------------------------------------------- 1072 (1549)
T ss_pred hhhcCChHHHHHH-------------------------------------------------------------------
Confidence 9999875422111
Q ss_pred HHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchhhhccccc
Q psy14708 268 ARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNW 347 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~~l~~~~~ 347 (513)
. ....+.+|++|+|+.+++|...+.++.|
T Consensus 1073 -----------------------------------R----------------~q~~~~~iiVtSYDv~RnD~d~l~~~~w 1101 (1549)
T KOG0392|consen 1073 -----------------------------------R----------------DQYKNANIIVTSYDVVRNDVDYLIKIDW 1101 (1549)
T ss_pred -----------------------------------H----------------hhccccceEEeeHHHHHHHHHHHHhccc
Confidence 0 1334568999999999999999999999
Q ss_pred cEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCccc--------
Q psy14708 348 RLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKT-------- 419 (513)
Q Consensus 348 ~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~~~-------- 419 (513)
+.+|+||+|-+||.+++.++++++|++.+|++|||||++|++.|||+++.||-|+++++...|.+.|+++.-
T Consensus 1102 NYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~S 1181 (1549)
T KOG0392|consen 1102 NYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSS 1181 (1549)
T ss_pred ceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred -------HHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhc----CCCCC--Ch
Q psy14708 420 -------ESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSK----GTTSA--NV 486 (513)
Q Consensus 420 -------~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~----~~~~~--~~ 486 (513)
.-.+++|++.+-||++||.|+||.++|||+..+.++|+|+|.|+++|+.+..+.....+. +..+. ..
T Consensus 1182 ske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~ 1261 (1549)
T KOG0392|consen 1182 SKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDK 1261 (1549)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcch
Confidence 123678999999999999999999999999999999999999999999999884322211 11222 26
Q ss_pred hHHHHHHHHHHHhcCCCCCcCC
Q psy14708 487 PNLMNTMMELRKCCIHPYLLNG 508 (513)
Q Consensus 487 ~~~l~~l~~LRq~c~HP~L~~~ 508 (513)
.++++.|.-||++|+||.|+-+
T Consensus 1262 ~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1262 THVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHHHHhcCCcceeeC
Confidence 7899999999999999999865
No 9
>KOG1002|consensus
Probab=100.00 E-value=1e-46 Score=369.81 Aligned_cols=277 Identities=33% Similarity=0.523 Sum_probs=228.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|.|||++++.|+. +..++...|||||||||||||+|+|+|++...
T Consensus 183 i~LL~fQkE~l~Wl~------------------~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~--------------- 229 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLT------------------SQEESSVAGGILADEMGMGKTIQTIALLLAEV--------------- 229 (791)
T ss_pred ecchhhhHHHHHHHH------------------HhhhhhhccceehhhhccchHHHHHHHHHhcc---------------
Confidence 689999999999997 45566789999999999999999999986532
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhc--Cce
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT--DLN 186 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~--~l~ 186 (513)
...|||||||.-.+.||.+||.+|+ .++
T Consensus 230 --------------------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~gslk 259 (791)
T KOG1002|consen 230 --------------------------------------------------DRAPTLVVAPTVALMQWKNEIERHTSGSLK 259 (791)
T ss_pred --------------------------------------------------ccCCeeEEccHHHHHHHHHHHHHhccCceE
Confidence 2367899999999999999999998 789
Q ss_pred eEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHHHHH
Q psy14708 187 VIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEE 266 (513)
Q Consensus 187 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
+++|||..|..
T Consensus 260 v~~YhG~~R~~--------------------------------------------------------------------- 270 (791)
T KOG1002|consen 260 VYIYHGAKRDK--------------------------------------------------------------------- 270 (791)
T ss_pred EEEEecccccC---------------------------------------------------------------------
Confidence 99999986631
Q ss_pred HHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhch-------
Q psy14708 267 LARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDC------- 339 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~------- 339 (513)
..+++..||+|+|||..+.+..
T Consensus 271 ---------------------------------------------------nikel~~YDvVLTty~vvEs~yRk~~~Gf 299 (791)
T KOG1002|consen 271 ---------------------------------------------------NIKELMNYDVVLTTYAVVESVYRKQDYGF 299 (791)
T ss_pred ---------------------------------------------------CHHHhhcCcEEEEecHHHHHHHHhccccc
Confidence 1225678899999999886532
Q ss_pred ----------hhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCh--
Q psy14708 340 ----------LELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNN-- 407 (513)
Q Consensus 340 ----------~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~-- 407 (513)
..|+++.|.|||+||||+||+..+.+++|+..|.+.+||||||||++|++.|||++++||+.++|..+
T Consensus 300 rrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc 379 (791)
T KOG1002|consen 300 RRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFC 379 (791)
T ss_pred cccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhh
Confidence 24899999999999999999999999999999999999999999999999999999999999887531
Q ss_pred ---------HHH-------------HHH------h-cC--------cccHHHHHHHHHHHHHHHHHHhHHHHhhc--CCC
Q psy14708 408 ---------EAF-------------MSE------F-GQ--------LKTESEVNKLQLLLKPMMLRRLKEDVEKS--IAP 448 (513)
Q Consensus 408 ---------~~f-------------~~~------~-~~--------~~~~~~~~~l~~~l~~~~~rrtk~~v~~~--LP~ 448 (513)
..| ..+ | .+ ...-......+.++..+|+||||-.-..+ |||
T Consensus 380 ~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPP 459 (791)
T KOG1002|consen 380 TKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPP 459 (791)
T ss_pred hhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Confidence 011 000 0 01 11122344677889999999999664443 799
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHHHh----hhhhcCCCCCChhHHHHHHHHHHHhcCCCCCcCC
Q psy14708 449 KEETVVEVELTNIQKKYYRGILERNF----SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508 (513)
Q Consensus 449 ~~~~~i~v~ls~~q~~~Y~~l~~~~~----~~l~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~~ 508 (513)
+...+..--++.+|..+|+-++.... .++..|..-+++.+++..++||||+++||+|+-.
T Consensus 460 Riv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~ 523 (791)
T KOG1002|consen 460 RIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLY 523 (791)
T ss_pred cceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeee
Confidence 99999999999999999999987654 4556677788999999999999999999999754
No 10
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.3e-46 Score=372.13 Aligned_cols=186 Identities=40% Similarity=0.684 Sum_probs=164.4
Q ss_pred cccCCcEEEecHHHHH-----hchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHH
Q psy14708 321 DLYKFHVLITTFEIII-----SDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 321 ~~~~~~vvitt~~~~~-----~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
....++++++||+.+. .....+...+|++||+||+|.+||.++..++++..+++.++|+|||||+.|++.|++++
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~ 183 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSL 183 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccc
Confidence 4567889999999999 67777888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCCChHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHH
Q psy14708 396 LNFLEPQQFSNNEAFMSEFGQ---LKTESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILER 472 (513)
Q Consensus 396 l~~L~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~ 472 (513)
++||+++.+.+...|.+.|.. .........|..+++.+++|+++.++...+|+..++++.|+||+.|+..|+++...
T Consensus 184 l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~ 263 (299)
T PF00176_consen 184 LRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKE 263 (299)
T ss_dssp HHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHH
T ss_pred hheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999998843 34556678999999999999999999778999999999999999999999999999
Q ss_pred HhhhhhcCC--CCCChhHHHHHHHHHHHhcCCCCCc
Q psy14708 473 NFSFLSKGT--TSANVPNLMNTMMELRKCCIHPYLL 506 (513)
Q Consensus 473 ~~~~l~~~~--~~~~~~~~l~~l~~LRq~c~HP~L~ 506 (513)
....+.... .......++..+++|||+|+||+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 264 ARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 887776655 4456788999999999999999985
No 11
>KOG0388|consensus
Probab=100.00 E-value=8.1e-46 Score=375.79 Aligned_cols=292 Identities=36% Similarity=0.613 Sum_probs=245.8
Q ss_pred ccccCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 17 ~~~~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~ 96 (513)
+.+-++|.+. .++|+.||++|++|+...+.+|-+ ||||||||+|||+++|++++.+.+.
T Consensus 555 t~tV~qPkil-~ctLKEYQlkGLnWLvnlYdqGiN-------------------GILADeMGLGKTVQsisvlAhLaE~- 613 (1185)
T KOG0388|consen 555 TRTVPQPKIL-KCTLKEYQLKGLNWLVNLYDQGIN-------------------GILADEMGLGKTVQSISVLAHLAET- 613 (1185)
T ss_pred eeeccCchhh-hhhhHHHhhccHHHHHHHHHcccc-------------------ceehhhhccchhHHHHHHHHHHHHh-
Confidence 3345667665 489999999999999977665532 7778888889999999998777554
Q ss_pred CCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchH
Q psy14708 97 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQ 176 (513)
Q Consensus 97 ~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~ 176 (513)
.+..||+|||+|.|++++|+
T Consensus 614 ------------------------------------------------------------~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 614 ------------------------------------------------------------HNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred ------------------------------------------------------------ccCCCceEEeehHHHHhHHH
Confidence 24568999999999999999
Q ss_pred HHHHhhc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhccccc
Q psy14708 177 REFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEF 255 (513)
Q Consensus 177 ~E~~~~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
.||.+|+ +++++.|+|....+.--.+ .|.+-.+
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrK----------------------fw~rKnm------------------------ 667 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRK----------------------FWNRKNM------------------------ 667 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHH----------------------hcchhhh------------------------
Confidence 9999998 9999999998553321110 0111100
Q ss_pred ccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHH
Q psy14708 256 RNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEII 335 (513)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~ 335 (513)
=.....|+|++|||+.+
T Consensus 668 ---------------------------------------------------------------Y~rna~fhVviTSYQlv 684 (1185)
T KOG0388|consen 668 ---------------------------------------------------------------YRRNAPFHVVITSYQLV 684 (1185)
T ss_pred ---------------------------------------------------------------hccCCCceEEEEeeeee
Confidence 01346789999999999
Q ss_pred HhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhc
Q psy14708 336 ISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG 415 (513)
Q Consensus 336 ~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~ 415 (513)
..+...|..+.|...|+||||-||...|.+++.+..++++.|++|||||++|+..|||.+++|+-|.+|.+..+|.+.|+
T Consensus 685 VtDeky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFS 764 (1185)
T KOG0388|consen 685 VTDEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFS 764 (1185)
T ss_pred echHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Ccc----------cHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCC
Q psy14708 416 QLK----------TESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSAN 485 (513)
Q Consensus 416 ~~~----------~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~ 485 (513)
+.. ++..+.+|+.+|.+||+||.|.+|..+|..+++..+.|+||-.|+.+|+.+.....
T Consensus 765 KdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------- 833 (1185)
T KOG0388|consen 765 KDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------- 833 (1185)
T ss_pred hhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh-----------
Confidence 643 45668899999999999999999999999999999999999999999999987753
Q ss_pred hhHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 486 VPNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 486 ~~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
...+..+++.||++|+||.|+...
T Consensus 834 ~~E~~~~vmQlrKVCNHPdLFer~ 857 (1185)
T KOG0388|consen 834 SMEMENLVMQLRKVCNHPDLFERL 857 (1185)
T ss_pred HHHHHHHHHHHHHhcCChHHHhhc
Confidence 123446899999999999997643
No 12
>KOG0386|consensus
Probab=100.00 E-value=2.3e-45 Score=386.38 Aligned_cols=302 Identities=39% Similarity=0.675 Sum_probs=255.0
Q ss_pred CCCCCccccCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHh
Q psy14708 12 PASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 12 ~~~~~~~~~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~ 91 (513)
.+..-.+..++|....+.+|++||+.|+.||.-++.++-+ ||||||||+|||+++|++|.+
T Consensus 376 AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLN-------------------GILADEMGLGKTIQtIsLitY 436 (1157)
T KOG0386|consen 376 AHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLN-------------------GILADEMGLGKTIQTISLITY 436 (1157)
T ss_pred cchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcc-------------------cccchhcccchHHHHHHHHHH
Confidence 3445567778999999999999999999999977766643 667777788999999999988
Q ss_pred hhhcCCCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCC
Q psy14708 92 VFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLST 171 (513)
Q Consensus 92 ~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sl 171 (513)
+.+.. ...||.|||||.+.
T Consensus 437 LmE~K-------------------------------------------------------------~~~GP~LvivPlst 455 (1157)
T KOG0386|consen 437 LMEHK-------------------------------------------------------------QMQGPFLIIVPLST 455 (1157)
T ss_pred HHHHc-------------------------------------------------------------ccCCCeEEeccccc
Confidence 87652 24689999999999
Q ss_pred ccchHHHHHhhc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhh
Q psy14708 172 IPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFL 250 (513)
Q Consensus 172 l~qW~~E~~~~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (513)
+.+|..||.+|. .+..+.|.|....++....+-
T Consensus 456 L~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qi---------------------------------------------- 489 (1157)
T KOG0386|consen 456 LVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQ---------------------------------------------- 489 (1157)
T ss_pred cCCchhhccccccceeeeeeeCCHHHHhhHHHHH----------------------------------------------
Confidence 999999999998 899999999865543332111
Q ss_pred cccccccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEe
Q psy14708 251 ANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLIT 330 (513)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit 330 (513)
...+|+|++|
T Consensus 490 ----------------------------------------------------------------------r~gKFnVLlT 499 (1157)
T KOG0386|consen 490 ----------------------------------------------------------------------RHGKFNVLLT 499 (1157)
T ss_pred ----------------------------------------------------------------------hcccceeeee
Confidence 2368999999
Q ss_pred cHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHh-hcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHH
Q psy14708 331 TFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLR-LLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEA 409 (513)
Q Consensus 331 t~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~-~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~ 409 (513)
||+.+.++...|..+.|..+||||+|++||..++....+. ...+.+|++|||||++|++.|||++++||-|.+|.+-.+
T Consensus 500 tyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~ 579 (1157)
T KOG0386|consen 500 TYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKA 579 (1157)
T ss_pred eHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhH
Confidence 9999999999999999999999999999999999999988 568999999999999999999999999999999999888
Q ss_pred HHHHhcCcc-------------cHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhh
Q psy14708 410 FMSEFGQLK-------------TESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476 (513)
Q Consensus 410 f~~~~~~~~-------------~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~ 476 (513)
|.+.|..+- +--...+|+.+|+||++||.|.+|..+||.+++.++.|.||..|+.+|..+.+.-.-.
T Consensus 580 FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~ 659 (1157)
T KOG0386|consen 580 FEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLL 659 (1157)
T ss_pred HHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCC
Confidence 888875431 1122568999999999999999999999999999999999999999999987764333
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 477 l~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
+...........+.+..+.||+|||||+++.+.
T Consensus 660 ~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 660 KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred cCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 333234455677899999999999999998554
No 13
>KOG0390|consensus
Probab=100.00 E-value=6.9e-42 Score=362.20 Aligned_cols=289 Identities=31% Similarity=0.485 Sum_probs=229.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCC-----CCeEE
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIR-----GPFLV 103 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~-----~~~li 103 (513)
..|||||.+|+.||+.... ...+ .....|||+||+||+|||+++|++++.+.+.++. .++||
T Consensus 237 ~~LrPHQ~EG~~FL~knl~--------g~~~-----~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lV 303 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLA--------GLIR-----PKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLV 303 (776)
T ss_pred hhcCchHHHHHHHHHhhhh--------cccc-----cCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEE
Confidence 5899999999999994332 1111 1236689999999999999999999999999998 88889
Q ss_pred ecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhc
Q psy14708 104 IAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT 183 (513)
Q Consensus 104 v~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~ 183 (513)
|||.+++.+|..||.+|.+. .
T Consensus 304 V~P~sLv~nWkkEF~KWl~~-----------------------------------------------------------~ 324 (776)
T KOG0390|consen 304 VAPSSLVNNWKKEFGKWLGN-----------------------------------------------------------H 324 (776)
T ss_pred EccHHHHHHHHHHHHHhccc-----------------------------------------------------------c
Confidence 99999999999888888742 0
Q ss_pred CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHH
Q psy14708 184 DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEY 263 (513)
Q Consensus 184 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
.+..+.++|..+. .|..-...+.++|.
T Consensus 325 ~i~~l~~~~~~~~----------------------------------~w~~~~sil~~~~~------------------- 351 (776)
T KOG0390|consen 325 RINPLDFYSTKKS----------------------------------SWIKLKSILFLGYK------------------- 351 (776)
T ss_pred ccceeeeecccch----------------------------------hhhhhHHHHHhhhh-------------------
Confidence 2233333333221 00000011111111
Q ss_pred HHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchhhhc
Q psy14708 264 VEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELK 343 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~~l~ 343 (513)
.-...|.+.+|+.+......+.
T Consensus 352 ----------------------------------------------------------~~~~~vli~sye~~~~~~~~il 373 (776)
T KOG0390|consen 352 ----------------------------------------------------------QFTTPVLIISYETASDYCRKIL 373 (776)
T ss_pred ----------------------------------------------------------heeEEEEeccHHHHHHHHHHHh
Confidence 1123488999999999999999
Q ss_pred cccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCcccH---
Q psy14708 344 DFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTE--- 420 (513)
Q Consensus 344 ~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~~~~--- 420 (513)
...+++||+||+|++||..+.+.+++..++.++|++|||||+||++.|+|++++|++|+.++....|...|..+...
T Consensus 374 ~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~ 453 (776)
T KOG0390|consen 374 LIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRD 453 (776)
T ss_pred cCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999654321
Q ss_pred -----------HHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHH
Q psy14708 421 -----------SEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489 (513)
Q Consensus 421 -----------~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~ 489 (513)
..+.+|..+.+.|++||+.+...+.||++.++++.|.+++.|+.+|..+.+........+. .
T Consensus 454 ~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~-------~ 526 (776)
T KOG0390|consen 454 ADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGY-------A 526 (776)
T ss_pred CCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcc-------h
Confidence 2367799999999999999899999999999999999999999999999887411111111 4
Q ss_pred HHHHHHHHHhcCCCCCcC
Q psy14708 490 MNTMMELRKCCIHPYLLN 507 (513)
Q Consensus 490 l~~l~~LRq~c~HP~L~~ 507 (513)
+..++.|.++|+||.|+.
T Consensus 527 l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 527 LELITKLKKLCNHPSLLL 544 (776)
T ss_pred hhHHHHHHHHhcCHHhhc
Confidence 778899999999999985
No 14
>KOG1015|consensus
Probab=100.00 E-value=9.3e-41 Score=347.33 Aligned_cols=312 Identities=25% Similarity=0.387 Sum_probs=230.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC--CCCCeEEecC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAP 106 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~--~~~~~liv~P 106 (513)
..|+|||..||+||+....+.-... .+..|. ||||||.||||||+|+|+|+...+... ..+++|||||
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~-~~~~Gs---------GcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~P 736 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRT-KKSPGS---------GCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCP 736 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhh-cCCCCc---------chHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcc
Confidence 4899999999999996554332222 344555 599999999999999999987665432 3456666666
Q ss_pred CCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhcCce
Q psy14708 107 LSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLN 186 (513)
Q Consensus 107 ~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~~l~ 186 (513)
.+++.+|..||.+|.... ..--.+.
T Consensus 737 lNt~~NW~~EFekWm~~~-------------------------------------------------------e~~~~le 761 (1567)
T KOG1015|consen 737 LNTALNWMNEFEKWMEGL-------------------------------------------------------EDDEKLE 761 (1567)
T ss_pred hHHHHHHHHHHHHhcccc-------------------------------------------------------cccccce
Confidence 666666666666664200 0000222
Q ss_pred eEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHHHHH
Q psy14708 187 VIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEE 266 (513)
Q Consensus 187 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
|..+....+.... ......|...+|+.++||+.|+.+-...........+
T Consensus 762 V~eL~~vkr~e~R--------------------------~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke---- 811 (1567)
T KOG1015|consen 762 VSELATVKRPEER--------------------------SYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKE---- 811 (1567)
T ss_pred eehhhhccChHHH--------------------------HHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHH----
Confidence 3322222221111 0122346778899999999999987554433332111
Q ss_pred HHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchhhhcccc
Q psy14708 267 LARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFN 346 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~~l~~~~ 346 (513)
.....+.+-+
T Consensus 812 ----------------------------------------------------------------------~f~k~lvdpG 821 (1567)
T KOG1015|consen 812 ----------------------------------------------------------------------IFNKALVDPG 821 (1567)
T ss_pred ----------------------------------------------------------------------HHHHhccCCC
Confidence 1122344557
Q ss_pred ccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCcccHHH----
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESE---- 422 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~---- 422 (513)
+|+||+||+|.+||..+..++|+..+++.+|++|||||++|++.|+|.|++|+.++++++..+|+..|.+++..+.
T Consensus 822 PD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dS 901 (1567)
T KOG1015|consen 822 PDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADS 901 (1567)
T ss_pred CCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988765322
Q ss_pred -----------HHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCC--CChhHH
Q psy14708 423 -----------VNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTS--ANVPNL 489 (513)
Q Consensus 423 -----------~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~--~~~~~~ 489 (513)
.+.|.+.|..++-|+....+...|||+.++||.|.||+.|..+|...++ +.........+ .-...+
T Consensus 902 T~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~~arl 980 (1567)
T KOG1015|consen 902 TMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGAGARL 980 (1567)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccchhhhH
Confidence 4578999999999999999999999999999999999999999999988 43333222211 134568
Q ss_pred HHHHHHHHHhcCCCCCc
Q psy14708 490 MNTMMELRKCCIHPYLL 506 (513)
Q Consensus 490 l~~l~~LRq~c~HP~L~ 506 (513)
+..+..|++|.+||+.+
T Consensus 981 f~dfqmlsrIwtHP~~l 997 (1567)
T KOG1015|consen 981 FQDFQMLSRIWTHPWCL 997 (1567)
T ss_pred HHHHHHHHHHhcCCCce
Confidence 89999999999999975
No 15
>KOG0383|consensus
Probab=100.00 E-value=9.5e-35 Score=305.56 Aligned_cols=309 Identities=47% Similarity=0.719 Sum_probs=251.5
Q ss_pred CccccCCCCccC--CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh
Q psy14708 16 WVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 16 ~~~~~~~p~~~~--~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~ 93 (513)
-..++.+|.+.. +..|.|||.+|++|+...|..+-. +|||||||+|||++++.+.....
T Consensus 279 ~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~-------------------~ilADEmgLgktVqsi~fl~sl~ 339 (696)
T KOG0383|consen 279 PVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVD-------------------AILADEMGLGKTVQSIVFLYSLP 339 (696)
T ss_pred CCCcccCCccccCCCccccccchhhhhhhhcccccCCC-------------------cccchhhcCCceeeEEEEEeecc
Confidence 444556777665 379999999999999988876654 45666666799998888765554
Q ss_pred hcCCCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCcc
Q psy14708 94 KTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIP 173 (513)
Q Consensus 94 ~~~~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~ 173 (513)
..+ ...+|.|+++|.+.+-
T Consensus 340 ~~~-------------------------------------------------------------~~~~P~Lv~ap~sT~~ 358 (696)
T KOG0383|consen 340 KEI-------------------------------------------------------------HSPGPPLVVAPLSTIV 358 (696)
T ss_pred ccc-------------------------------------------------------------CCCCCceeeccCcccc
Confidence 332 1346777777777777
Q ss_pred chHHHHHhhc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcc
Q psy14708 174 NWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLAN 252 (513)
Q Consensus 174 qW~~E~~~~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
+|.+|+..|. ++.+..|.|..+.+....
T Consensus 359 nwe~e~~~wap~~~vv~~~G~~k~r~iir--------------------------------------------------- 387 (696)
T KOG0383|consen 359 NWEREFELWAPSFYVVPYPGTAKSRAIIR--------------------------------------------------- 387 (696)
T ss_pred CCCCchhccCCCcccccCCCCccchhhhh---------------------------------------------------
Confidence 7777777776 778888888754322221
Q ss_pred cccccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccc------cccccccccCCc
Q psy14708 253 NEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKN------QFIKEKDLYKFH 326 (513)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 326 (513)
++++...+... ...+......++
T Consensus 388 ---------------------------------------------------epe~s~ed~~~~~~~~i~~~~~~s~~k~~ 416 (696)
T KOG0383|consen 388 ---------------------------------------------------EPEFSFEDSSIKSSPKISEMKTESSAKFH 416 (696)
T ss_pred ---------------------------------------------------cccccccccccccCCccccccchhhcccc
Confidence 11111111100 011112346788
Q ss_pred EEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCC
Q psy14708 327 VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSN 406 (513)
Q Consensus 327 vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~ 406 (513)
+.+++|+....+...+..+.|..+|+||+|+++|+.+.....+......++++|||||.+|++.+|+++|+||.++.+.+
T Consensus 417 vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~ 496 (696)
T KOG0383|consen 417 VLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNS 496 (696)
T ss_pred cCCCchhhcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCcccHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCCh
Q psy14708 407 NEAFMSEFGQLKTESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANV 486 (513)
Q Consensus 407 ~~~f~~~~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~ 486 (513)
...|.+.|...........++.++.+.|+||.+.|+.+..|++++-++.+.|++-|+++|+.++.+....+.. ..+.
T Consensus 497 ~~~f~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~---~~~~ 573 (696)
T KOG0383|consen 497 LEWFLEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA---GVHQ 573 (696)
T ss_pred hhhhhhhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh---cchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888777 3345
Q ss_pred hHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 487 PNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 487 ~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
..++++++.||++|+|||++...
T Consensus 574 ~s~~n~~mel~K~~~hpy~~~~~ 596 (696)
T KOG0383|consen 574 YSLLNIVMELRKQCNHPYLSPLE 596 (696)
T ss_pred HHHHHHHHHHHHhhcCcccCccc
Confidence 66789999999999999998763
No 16
>KOG1016|consensus
Probab=100.00 E-value=1e-33 Score=289.80 Aligned_cols=341 Identities=25% Similarity=0.394 Sum_probs=241.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
-.++|||+-||+||........+.+- -.. ..||||||.||+|||+++|+++.-.+++-+++.+|+|+|-+
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~ryk-kSs---------GFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiN 322 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYK-KSS---------GFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPIN 322 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhcc-ccC---------CcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehH
Confidence 36899999999999854432222111 122 34699999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhcCceeE
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVI 188 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~~l~~~ 188 (513)
.+.+|..||..|.+. +.+... |-| -.+.|.
T Consensus 323 TlQNWlsEfnmWiP~------------y~sD~~------------------------vrp--------------R~F~vf 352 (1387)
T KOG1016|consen 323 TLQNWLSEFNMWIPK------------YFSDTG------------------------VRP--------------RSFEVF 352 (1387)
T ss_pred HHHHHHHHhhhhcCC------------CcccCC------------------------Ccc--------------ceeEEE
Confidence 999999999999752 000000 000 134566
Q ss_pred EEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhcccccccCchhHHHHHHH
Q psy14708 189 VYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEELA 268 (513)
Q Consensus 189 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (513)
++....++...+.+.-. .|-..||+|.+||+.|+-+...+....+.-.
T Consensus 353 ~LnD~~KT~~~Rakvi~-------------------------~Wv~~GGVlLvGYemfRLL~lk~~~~~grpk------- 400 (1387)
T KOG1016|consen 353 LLNDGVKTFDQRAKVIE-------------------------QWVQTGGVLLVGYEMFRLLILKTLPKKGRPK------- 400 (1387)
T ss_pred EecCchhhHHHHHHHHH-------------------------HHhccCCEEEehHHHHHHHHHhcccccCCcc-------
Confidence 66665555544443222 1445799999999999887655433322111
Q ss_pred HHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchhhhcccccc
Q psy14708 269 RLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWR 348 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~~l~~~~~~ 348 (513)
.|.... ...+++++..+. .-+...-....|..-+.|
T Consensus 401 --------------kt~kr~------------------------~~~~i~~d~eD~------~qe~~~li~~AL~~PGPD 436 (1387)
T KOG1016|consen 401 --------------KTLKRI------------------------SSGFIKDDSEDQ------RQEAYSLIRSALLEPGPD 436 (1387)
T ss_pred --------------cccccc------------------------CCcccCCchhhh------HHHHHHHHHHHhcCCCCC
Confidence 000000 001111111000 112222233446666899
Q ss_pred EEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCcccH--------
Q psy14708 349 LCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTE-------- 420 (513)
Q Consensus 349 ~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~~~~-------- 420 (513)
+||+||.|+|||.....+.++..++.++|++|||=|++|++-|.|.|+.|++|+.++.+.+|-..|..++..
T Consensus 437 lVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStP 516 (1387)
T KOG1016|consen 437 LVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTP 516 (1387)
T ss_pred eEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999765432
Q ss_pred -------HHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHHH
Q psy14708 421 -------SEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTM 493 (513)
Q Consensus 421 -------~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~l 493 (513)
.....|+.++..|+-||+-.-+..-||.+.|+++.|.+|..||.+|+.+.-.....+...... ...-+.++
T Consensus 517 dDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~--~~NPLkAF 594 (1387)
T KOG1016|consen 517 DDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDA--VFNPLKAF 594 (1387)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhcccccc--ccChHHHH
Confidence 224579999999999999998888899999999999999999999999985554433332221 11234445
Q ss_pred HHHHHhcCCCCCcC
Q psy14708 494 MELRKCCIHPYLLN 507 (513)
Q Consensus 494 ~~LRq~c~HP~L~~ 507 (513)
.-..+|.+||.++.
T Consensus 595 ~vCcKIWNHPDVLY 608 (1387)
T KOG1016|consen 595 SVCCKIWNHPDVLY 608 (1387)
T ss_pred HHHHHhcCChHHHH
Confidence 55566669998753
No 17
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.8e-34 Score=322.61 Aligned_cols=186 Identities=37% Similarity=0.592 Sum_probs=163.3
Q ss_pred CCcEEEecHHHHHh---chhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHh-hh
Q psy14708 324 KFHVLITTFEIIIS---DCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLN-FL 399 (513)
Q Consensus 324 ~~~vvitt~~~~~~---~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~-~L 399 (513)
.+++++|||+.+.. +...+....|+++|+||+|++||..+..++++..+++.++++|||||++|++.|||+++. |+
T Consensus 447 ~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~ 526 (866)
T COG0553 447 IFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFL 526 (866)
T ss_pred eeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHh
Confidence 47899999999999 999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCC-ChHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHHhHHH--HhhcCCCceEEEEEecCCHHHHHH
Q psy14708 400 EPQQFS-NNEAFMSEFGQLKTE-----------SEVNKLQLLLKPMMLRRLKED--VEKSIAPKEETVVEVELTNIQKKY 465 (513)
Q Consensus 400 ~~~~~~-~~~~f~~~~~~~~~~-----------~~~~~l~~~l~~~~~rrtk~~--v~~~LP~~~~~~i~v~ls~~q~~~ 465 (513)
.|+.++ +...|...|..+... .....|+.++++|++||++.+ +..+||++.+.++.|+|++.|+.+
T Consensus 527 ~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~ 606 (866)
T COG0553 527 NPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQREL 606 (866)
T ss_pred CCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHH
Confidence 999999 558888888654321 233348899999999999999 888999999999999999999999
Q ss_pred HHHHHH---HHhhhhhcCCCCC--------ChhHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 466 YRGILE---RNFSFLSKGTTSA--------NVPNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 466 Y~~l~~---~~~~~l~~~~~~~--------~~~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
|..... +....+....... ....++..+++||++|+||.++...
T Consensus 607 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~ 661 (866)
T COG0553 607 YEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEG 661 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccc
Confidence 999999 6555554432221 2678999999999999999998875
No 18
>KOG1001|consensus
Probab=100.00 E-value=1e-32 Score=294.42 Aligned_cols=188 Identities=30% Similarity=0.521 Sum_probs=164.3
Q ss_pred cccCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhC
Q psy14708 321 DLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLE 400 (513)
Q Consensus 321 ~~~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~ 400 (513)
++.++|||+|||..+.. ..+..+.|-|||+||||.++|.+++.++++..+++.+||+|||||++|+++|+|+++.|+.
T Consensus 231 el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~ 308 (674)
T KOG1001|consen 231 ELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLE 308 (674)
T ss_pred hhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhh
Confidence 56778899999999997 5567799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhcCcccH----HHHHHHHHHHHHHHHHHhHHHHh-----hcCCCceEEEEEecCCHHHHHHHHHHHH
Q psy14708 401 PQQFSNNEAFMSEFGQLKTE----SEVNKLQLLLKPMMLRRLKEDVE-----KSIAPKEETVVEVELTNIQKKYYRGILE 471 (513)
Q Consensus 401 ~~~~~~~~~f~~~~~~~~~~----~~~~~l~~~l~~~~~rrtk~~v~-----~~LP~~~~~~i~v~ls~~q~~~Y~~l~~ 471 (513)
.+++.+...|...+..+... .....++.++..+++||+|.... -.|||+...++.+.++..|+.+|..+..
T Consensus 309 ~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~ 388 (674)
T KOG1001|consen 309 IHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKA 388 (674)
T ss_pred cCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhh
Confidence 99999999998888765433 44677888999999999997422 2589999999999999999999999988
Q ss_pred HHhhhh----hcCCCCCChhHHHHHHHHHHHhcCCCCCcCCCc
Q psy14708 472 RNFSFL----SKGTTSANVPNLMNTMMELRKCCIHPYLLNGKT 510 (513)
Q Consensus 472 ~~~~~l----~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~~~~ 510 (513)
...... ..+....+.+.++..+++|||+|+||.|+....
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~ 431 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEM 431 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhh
Confidence 765433 445566778899999999999999999987543
No 19
>KOG0298|consensus
Probab=99.98 E-value=9.7e-33 Score=297.64 Aligned_cols=356 Identities=24% Similarity=0.343 Sum_probs=251.6
Q ss_pred ccchhhHHhhHHHHHhhhc----------------------CCccccccccCCCCcchhhhhhcccccccCCCCchhhHH
Q psy14708 29 NTLRAYQLEGLNWLMFSWF----------------------NGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSL 86 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~----------------------~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~i 86 (513)
.++|+||...+.||..... ....++..++++.+++.+.+.-||.++||||+|||.+-+
T Consensus 244 ~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~~e~l~~~~t~~de~gl~k~~E~~ 323 (1394)
T KOG0298|consen 244 SQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELPKESLSPGGTLADEMGLGKTVEFL 323 (1394)
T ss_pred hhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccchhccCCCcchHHHHhhhHHHHHHH
Confidence 6899999999999983332 334567889999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCeE----------EecC-CCchhhHHHHHHhhcCCcEEEEcc---eeeEEecccchhhhhhhh----
Q psy14708 87 TFVDAVFKTGIRGPFL----------VIAP-LSTIPNWQREFEAWTDLNVIVYHA---TFVVLLQTGSKFFRICLE---- 148 (513)
Q Consensus 87 ali~~~~~~~~~~~~l----------iv~P-~~~~~~W~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---- 148 (513)
|++..+.+....-+.. -.++ ..-..+|.++...- + ...++ ........+.....+|..
T Consensus 324 a~~~~n~~p~~~~~~s~~~~~~~~~~~~~e~~~~r~nq~~~~~~~-~---~~~~g~~~~~ade~~~qk~~~~l~~~l~~~ 399 (1394)
T KOG0298|consen 324 AMLTSNRRPPDSYRNSYLHQRLEEYSDEVELKRSRINQKDEVLCS-G---DKKHGKRVQCADEMGWQKTSEKLILELSDL 399 (1394)
T ss_pred HHHhccCCCcccccchHHHHHHHHHhhhhHhHHhHhhhhhHHhhc-C---CccCCcceeehhhhhccchHHHHHHHHhcc
Confidence 9887665542111100 0011 01112233221111 0 01111 111111111121111111
Q ss_pred ---------hhhhhhhccccCCCeEEEecCCCccchHHHHHhhc--CceeEEEeccccchhhhhHHhHhhhhhcccccCC
Q psy14708 149 ---------FFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT--DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPK 217 (513)
Q Consensus 149 ---------~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (513)
+...........|+||||||.+++.||.+||.+|+ .+.++.|.|-++..-
T Consensus 400 ~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Girk~~~------------------- 460 (1394)
T KOG0298|consen 400 PKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGIRKTFW------------------- 460 (1394)
T ss_pred cccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEechhhhcc-------------------
Confidence 11111122235699999999999999999999999 458999999765310
Q ss_pred CCccccccCCcccchhhccccccccccchhhhhcccccccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhh
Q psy14708 218 DGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASA 297 (513)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
T Consensus 461 -------------------------------------------------------------------------------- 460 (1394)
T KOG0298|consen 461 -------------------------------------------------------------------------------- 460 (1394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHhhhhhhccccccccccccccCCcEEEecHHHHHhchhh----------------------hccccccEEEEccc
Q psy14708 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLE----------------------LKDFNWRLCIIDEA 355 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~~~~~~~~~----------------------l~~~~~~~vIvDEa 355 (513)
..+.+...+|||+|||+.++.+... |..+.|+||++|||
T Consensus 461 -------------------~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEa 521 (1394)
T KOG0298|consen 461 -------------------LSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEA 521 (1394)
T ss_pred -------------------cCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHH
Confidence 1123678899999999999986432 77778999999999
Q ss_pred cccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhcCccc-HHHHHHHHHHHHHHH
Q psy14708 356 HRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKT-ESEVNKLQLLLKPMM 434 (513)
Q Consensus 356 H~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~~~~~~-~~~~~~l~~~l~~~~ 434 (513)
|.+....|..++|+..|++.++|+.||||+++ ++||++++.||+..+|....+|.+...+... ......+.+++...+
T Consensus 522 QMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~~~~~~dl~~q~l 600 (1394)
T KOG0298|consen 522 QMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAKCEPLLDLFKQLL 600 (1394)
T ss_pred HhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Confidence 99999999999999999999999999999999 9999999999999999999888876643321 234557888999999
Q ss_pred HHHhHHHHhhc--CCCceEEEEEecCCHHHHHHHHHHHH----HHhhhhhcC--------C-----CCCChhHHHHHHHH
Q psy14708 435 LRRLKEDVEKS--IAPKEETVVEVELTNIQKKYYRGILE----RNFSFLSKG--------T-----TSANVPNLMNTMME 495 (513)
Q Consensus 435 ~rrtk~~v~~~--LP~~~~~~i~v~ls~~q~~~Y~~l~~----~~~~~l~~~--------~-----~~~~~~~~l~~l~~ 495 (513)
.|+.+-+|..+ +||..+.+....+++.|..+|+.... ++.+.+.+- . .......++..+.+
T Consensus 601 ~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~r 680 (1394)
T KOG0298|consen 601 WRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLR 680 (1394)
T ss_pred hhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHH
Confidence 99999998765 69998888888888888777765543 333222110 1 11223568899999
Q ss_pred HHHhcCCCCCcC
Q psy14708 496 LRKCCIHPYLLN 507 (513)
Q Consensus 496 LRq~c~HP~L~~ 507 (513)
|||+||||..-.
T Consensus 681 LRq~Cchplv~~ 692 (1394)
T KOG0298|consen 681 LRQACCHPLVGN 692 (1394)
T ss_pred HHHhhccccccc
Confidence 999999997644
No 20
>KOG1000|consensus
Probab=99.98 E-value=8.9e-32 Score=265.16 Aligned_cols=149 Identities=28% Similarity=0.363 Sum_probs=126.0
Q ss_pred cEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc--ccccEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy14708 326 HVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL--HLEHRVLLSGTPLQNNVNELFSLLNFLEPQQ 403 (513)
Q Consensus 326 ~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l--~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~ 403 (513)
.|.++||+.+......+..-.|..||+||+|++|+..+++.+++..+ .+.+.++|||||...++.|||.++..+.+-+
T Consensus 288 ~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tl 367 (689)
T KOG1000|consen 288 TVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTL 367 (689)
T ss_pred eEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccc
Confidence 48999999999999999998899999999999999999999888777 7899999999999999999999999999999
Q ss_pred CCChHHHHHHhcCcc---------cHHHHHHHHHHHH-HHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHH
Q psy14708 404 FSNNEAFMSEFGQLK---------TESEVNKLQLLLK-PMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473 (513)
Q Consensus 404 ~~~~~~f~~~~~~~~---------~~~~~~~l~~~l~-~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~ 473 (513)
|.++++|...|++.. ...+..+|+.+|. ..|+||+|.+|+.+|||+..+++ +...+.+-+.-+.+....
T Consensus 368 fp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~a 446 (689)
T KOG1000|consen 368 FPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVV-YVSGGRIDARMDDLVKAA 446 (689)
T ss_pred cccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEE-EEcCCccchHHHHHHHHh
Confidence 999999999998653 3466788888876 45999999999999999955555 444555555555555544
Q ss_pred hh
Q psy14708 474 FS 475 (513)
Q Consensus 474 ~~ 475 (513)
.+
T Consensus 447 ~~ 448 (689)
T KOG1000|consen 447 AD 448 (689)
T ss_pred hh
Confidence 33
No 21
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=9.2e-29 Score=273.44 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=109.7
Q ss_pred CCcEEEecHHHHHhch---hhhccccccEEEEccccccCC---cchhHHHHHhhc--ccccEEEEeCCCCCCCHHHHHHH
Q psy14708 324 KFHVLITTFEIIISDC---LELKDFNWRLCIIDEAHRLKN---RNCKLLEGLRLL--HLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~---~~l~~~~~~~vIvDEaH~~kn---~~s~~~~al~~l--~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
.++++|+||+.+..+. ..+....|++||+||||++++ ..+..++.+..+ +++++++|||||.+|+..|+|++
T Consensus 247 ~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~fal 326 (956)
T PRK04914 247 TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFAR 326 (956)
T ss_pred cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHh
Confidence 4679999999999854 346677999999999999985 345668888887 57899999999999999999999
Q ss_pred HhhhCCCCCCChHHHHHHhcC---------------cccHHHHHHHHHH---------------------------H---
Q psy14708 396 LNFLEPQQFSNNEAFMSEFGQ---------------LKTESEVNKLQLL---------------------------L--- 430 (513)
Q Consensus 396 l~~L~~~~~~~~~~f~~~~~~---------------~~~~~~~~~l~~~---------------------------l--- 430 (513)
+++|+|+.|+++..|.+.... ..+....+.|..+ +
T Consensus 327 L~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L 406 (956)
T PRK04914 327 LRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISEL 406 (956)
T ss_pred hhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHH
Confidence 999999999999999764321 1011111222221 1
Q ss_pred ------HHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHH
Q psy14708 431 ------KPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYR 467 (513)
Q Consensus 431 ------~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~ 467 (513)
..+|+|++++++. .+|++..+.+.+++++..+..+.
T Consensus 407 ~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 407 LDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred HhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHH
Confidence 2567788888876 79999999999999776555543
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=3.7e-19 Score=191.27 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=73.4
Q ss_pred CcEEEecHHHHHhc----------hhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHH
Q psy14708 325 FHVLITTFEIIISD----------CLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 325 ~~vvitt~~~~~~~----------~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
.+|+++||+.+... ...+....|++||+||+|++.+ ....+.+..+++.+||+|||||..++- ...
T Consensus 344 ~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~ 419 (732)
T TIGR00603 344 AGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KIT 419 (732)
T ss_pred CcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chh
Confidence 56999999988653 1235556899999999999943 334456777899999999999997752 222
Q ss_pred HHh-hhCCCCCCChHHHHHHhcCcccHHHHHHHHHHHHHHHHHHhHHHHh--hcCCCceEEEEEecCCHHHHHHHHH
Q psy14708 395 LLN-FLEPQQFSNNEAFMSEFGQLKTESEVNKLQLLLKPMMLRRLKEDVE--KSIAPKEETVVEVELTNIQKKYYRG 468 (513)
Q Consensus 395 ll~-~L~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~--~~LP~~~~~~i~v~ls~~q~~~Y~~ 468 (513)
.+. +++|..+.- ...+.. .-|.+.....+.|+|++.+...|..
T Consensus 420 ~L~~LiGP~vye~-------------------------------~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~ 465 (732)
T TIGR00603 420 DLNFLIGPKLYEA-------------------------------NWMELQKKGFIANVQCAEVWCPMTPEFYREYLR 465 (732)
T ss_pred hhhhhcCCeeeec-------------------------------CHHHHHhCCccccceEEEEEecCCHHHHHHHHH
Confidence 233 344443211 111111 2467777788999999988777754
No 23
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=6.2e-14 Score=146.49 Aligned_cols=118 Identities=23% Similarity=0.273 Sum_probs=80.9
Q ss_pred CcEEEecHHHHHhc--hhhhccccccEEEEccccccCCcchhHHHHHhhccccc-EEEEeCCCCCCCHHHHHHHHhhhCC
Q psy14708 325 FHVLITTFEIIISD--CLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEH-RVLLSGTPLQNNVNELFSLLNFLEP 401 (513)
Q Consensus 325 ~~vvitt~~~~~~~--~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~-r~~LTGTP~~n~~~dl~~ll~~L~~ 401 (513)
..|++.||+++... ...+..-+|+.||+||+|++..+.. ...+..+.+.. ++.|||||...+-..+..+..++++
T Consensus 123 ~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~--~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~ 200 (442)
T COG1061 123 AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY--RRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP 200 (442)
T ss_pred CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH--HHHHHhhhcccceeeeccCceeecCCchhHHHHhcCC
Confidence 35999999999986 3444455899999999999954432 23344455566 9999999986654445555555543
Q ss_pred CCCCChHHHHHHhcCcccHHHHHHHHHHHHHHHHHHh-HHHHh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHhh
Q psy14708 402 QQFSNNEAFMSEFGQLKTESEVNKLQLLLKPMMLRRL-KEDVE-KSIAPKEETVVEVELTNIQKKYYRGILERNFS 475 (513)
Q Consensus 402 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~rrt-k~~v~-~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~ 475 (513)
-.+ ... ++.+. ..|.|.....+.+.++..++..|........+
T Consensus 201 ~vy-------------------------------~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~ 245 (442)
T COG1061 201 IVY-------------------------------EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRE 245 (442)
T ss_pred eEe-------------------------------ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhh
Confidence 221 111 22222 35889999999999999999999987766543
No 24
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.54 E-value=2.9e-14 Score=131.12 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=57.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|||||.+++.-+.+.+... ...+.+++...+|.|||.++++++..+.. +++++||.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~----------------~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~ 60 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENK----------------KEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNI 60 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTT----------------SGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSH
T ss_pred CCCCHHHHHHHHHHHHHHHhc----------------CCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHH
Confidence 479999999999888655433 01234788999999999999998887776 99999998
Q ss_pred CchhhHHHHHHhhcC
Q psy14708 108 STIPNWQREFEAWTD 122 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~ 122 (513)
+++.||..++..+..
T Consensus 61 ~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 61 SLLEQWYDEFDDFGS 75 (184)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999977754
No 25
>PRK13766 Hef nuclease; Provisional
Probab=99.42 E-value=3.8e-12 Score=143.19 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=71.7
Q ss_pred CcEEEecHHHHHhchh--hhccccccEEEEccccccCCcchhHHHHHhhc---ccccEEEEeCCCCCCCHHHHHHHHhhh
Q psy14708 325 FHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL---HLEHRVLLSGTPLQNNVNELFSLLNFL 399 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l---~a~~r~~LTGTP~~n~~~dl~~ll~~L 399 (513)
.+|+++|++.+..+.. .+..-.|+.||+||||++.+..+....+-.-. +...+++|||||..+ ...+..++..|
T Consensus 108 ~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L 186 (773)
T PRK13766 108 AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENL 186 (773)
T ss_pred CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhC
Confidence 4699999998887642 23344689999999999976554333222212 345589999999765 66777777776
Q ss_pred CCCCCCC----hHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHhHHHHh
Q psy14708 400 EPQQFSN----NEAFMSEFGQ-------LKTESEVNKLQLLLKPMMLRRLKEDVE 443 (513)
Q Consensus 400 ~~~~~~~----~~~f~~~~~~-------~~~~~~~~~l~~~l~~~~~rrtk~~v~ 443 (513)
......- ..+....+.. ..-......++..+..++.++.++...
T Consensus 187 ~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 187 GIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442211 1111221111 122344566777777777777666543
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.35 E-value=8.1e-12 Score=133.07 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=44.5
Q ss_pred CcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCCCCCCC
Q psy14708 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGTPLQNN 388 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGTP~~n~ 388 (513)
.+|+++|++++.+....+. -+|+.||+||||++... .....+..+ ++..+++|||||....
T Consensus 202 ~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 202 APIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDGK 263 (501)
T ss_pred CCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccch--hHHHHHHhhhccceEEEEeccCCCcc
Confidence 4699999999876543322 26899999999999653 234455566 5778999999996543
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=1.3e-11 Score=107.56 Aligned_cols=62 Identities=34% Similarity=0.355 Sum_probs=45.8
Q ss_pred cCCcEEEecHHHHHhchhhh--ccccccEEEEccccccCCcchhHH---HHHhhcccccEEEEeCCC
Q psy14708 323 YKFHVLITTFEIIISDCLEL--KDFNWRLCIIDEAHRLKNRNCKLL---EGLRLLHLEHRVLLSGTP 384 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l--~~~~~~~vIvDEaH~~kn~~s~~~---~al~~l~a~~r~~LTGTP 384 (513)
...++++.+++.+....... ....+++||+||+|.+.+...... ..........++++||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 34568999999887754432 345789999999999987765543 233345678899999998
No 28
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.32 E-value=1.7e-11 Score=113.43 Aligned_cols=71 Identities=31% Similarity=0.463 Sum_probs=53.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+++|+|.+++..+.... ..+++..++|+|||.+++.++......+...++++++|.
T Consensus 7 ~~~~~~Q~~~~~~~~~~~----------------------~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~ 64 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL----------------------RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTR 64 (201)
T ss_pred CCCCHHHHHHHHHHHcCC----------------------CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCH
Confidence 679999999999886210 348899999999999888877776666556677777774
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..+|..++..+.
T Consensus 65 ~~~~~~~~~~~~~~ 78 (201)
T smart00487 65 ELAEQWAEELKKLG 78 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 66667777766554
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.27 E-value=1.8e-11 Score=139.60 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=62.7
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+..|||||.+||..+.+.+.++ .+++++.+..|+|||.++++++..+.+.+..+++|+++|.
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g------------------~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR 472 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEG------------------QREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDR 472 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc------------------cCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecH
Confidence 3579999999998877554432 2458899999999999999999888888778899999995
Q ss_pred -CchhhHHHHHHhh
Q psy14708 108 -STIPNWQREFEAW 120 (513)
Q Consensus 108 -~~~~~W~~E~~~~ 120 (513)
.++.||..+|..+
T Consensus 473 ~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 473 SALGEQAEDAFKDT 486 (1123)
T ss_pred HHHHHHHHHHHHhc
Confidence 8999999998765
No 30
>KOG1123|consensus
Probab=99.20 E-value=4.4e-11 Score=119.74 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=71.2
Q ss_pred CCcEEEecHHHHHhc----------hhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCC--CHHH
Q psy14708 324 KFHVLITTFEIIISD----------CLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQN--NVNE 391 (513)
Q Consensus 324 ~~~vvitt~~~~~~~----------~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n--~~~d 391 (513)
...|+++||..+..- ...+....|.++++||.|-+ +.....+.+.-+++..++.||+|.+.. .+.|
T Consensus 390 ~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvREDdKI~D 467 (776)
T KOG1123|consen 390 GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVREDDKITD 467 (776)
T ss_pred CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeeccccccc
Confidence 445889999877652 34577888999999999998 333444555556899999999999865 3444
Q ss_pred HHHHHhhhCCCCCCChHHHHHHhcCcccHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHH
Q psy14708 392 LFSLLNFLEPQQFSNNEAFMSEFGQLKTESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRG 468 (513)
Q Consensus 392 l~~ll~~L~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~ 468 (513)
|. .+++|.++.. .|.+.- - ..-+....---++|+||++-...|-.
T Consensus 468 LN---FLIGPKlYEA--nWmdL~-----------------------~----kGhIA~VqCaEVWCpMt~eFy~eYL~ 512 (776)
T KOG1123|consen 468 LN---FLIGPKLYEA--NWMDLQ-----------------------K----KGHIAKVQCAEVWCPMTPEFYREYLR 512 (776)
T ss_pred cc---eeecchhhhc--cHHHHH-----------------------h----CCceeEEeeeeeecCCCHHHHHHHHh
Confidence 32 2345655432 111100 0 01234455667899999976666654
No 31
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.15 E-value=1.8e-10 Score=126.40 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=63.0
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+.-.|+||..||.-+.+...++.. +- .-++|++.+..|.|||++++.++..+.+.....++|||+|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~-------~~------~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR 302 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTW-------GK------DERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDR 302 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhccc-------CC------CCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECc
Confidence 456899999999998876654310 00 13569999999999999999998777666667788889995
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.+..||.++|..+.
T Consensus 303 ~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 303 RELDYQLMKEFQSLQ 317 (667)
T ss_pred HHHHHHHHHHHHhhC
Confidence 78889998887764
No 32
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.11 E-value=1.1e-10 Score=124.29 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=68.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC-C
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP-L 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P-~ 107 (513)
..+|+||..|++...+.+.++++. .+|....|+|||.+||+++..+.+.+..+++|.++- +
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~r------------------aLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~ 225 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNR------------------ALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRN 225 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCce------------------EEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechH
Confidence 689999999999999988877744 668899999999999999999999999999999998 5
Q ss_pred CchhhHHHHHHhhcC
Q psy14708 108 STIPNWQREFEAWTD 122 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~ 122 (513)
+++.|-..++..|.|
T Consensus 226 ~Lv~QA~~af~~~~P 240 (875)
T COG4096 226 ALVDQAYGAFEDFLP 240 (875)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888898888888875
No 33
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.01 E-value=7e-09 Score=100.24 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=59.9
Q ss_pred ccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 25 YKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 25 ~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
......|=.-|+++|.+.+.... ..|.+.. -.|-+|+|.+|.||-.++-++|...+..+..+.+-|-
T Consensus 32 ~~~~g~LS~~QLEaV~yA~q~h~----~~Lp~~~---------R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS 98 (303)
T PF13872_consen 32 VIDSGLLSALQLEAVIYACQRHE----QILPGGS---------RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVS 98 (303)
T ss_pred HHhcccccHHHHHHHHHHHHHHH----hhccccc---------CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEE
Confidence 34446788899999998884433 2344332 3568999999999999999999999998877666666
Q ss_pred cCCCchhhHHHHHHh
Q psy14708 105 APLSTIPNWQREFEA 119 (513)
Q Consensus 105 ~P~~~~~~W~~E~~~ 119 (513)
+.+.+..--.+++..
T Consensus 99 ~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 99 VSNDLKYDAERDLRD 113 (303)
T ss_pred CChhhhhHHHHHHHH
Confidence 666666665555543
No 34
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.90 E-value=3.5e-08 Score=100.10 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=54.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+.|.||..-++-.+ -...+++-..|||||++|+.+++..++.... .+|+++|.
T Consensus 14 ie~R~YQ~~i~a~al------------------------~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTK 68 (542)
T COG1111 14 IEPRLYQLNIAAKAL------------------------FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTK 68 (542)
T ss_pred ccHHHHHHHHHHHHh------------------------hcCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCc
Confidence 467889997665444 2237889999999999999998877777665 89999995
Q ss_pred CchhhHHHHHHhhcC
Q psy14708 108 STIPNWQREFEAWTD 122 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~ 122 (513)
.++.|=.+-+.++.+
T Consensus 69 PLV~Qh~~~~~~v~~ 83 (542)
T COG1111 69 PLVLQHAEFCRKVTG 83 (542)
T ss_pred hHHHHHHHHHHHHhC
Confidence 888888887777764
No 35
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.87 E-value=3.3e-08 Score=92.60 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=47.9
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHH-HHHhhhhc--CCCCCeEEec
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLT-FVDAVFKT--GIRGPFLVIA 105 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~ia-li~~~~~~--~~~~~~liv~ 105 (513)
..++++|.+++.-+.. + +..+++...|.|||.+.+. ++...... ....+++|++
T Consensus 20 ~~~~~~Q~~~~~~~~~----~-------------------~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~ 76 (203)
T cd00268 20 EKPTPIQARAIPPLLS----G-------------------RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILA 76 (203)
T ss_pred CCCCHHHHHHHHHHhc----C-------------------CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEc
Confidence 3589999999987762 1 2367888899999988544 44443333 3445678888
Q ss_pred CC-CchhhHHHHHHhhc
Q psy14708 106 PL-STIPNWQREFEAWT 121 (513)
Q Consensus 106 P~-~~~~~W~~E~~~~~ 121 (513)
|. .++.|+...++.+.
T Consensus 77 p~~~L~~q~~~~~~~~~ 93 (203)
T cd00268 77 PTRELALQIAEVARKLG 93 (203)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 85 66777777766653
No 36
>KOG0354|consensus
Probab=98.80 E-value=6.3e-08 Score=103.60 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=56.4
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
...||+||.+-+.-.+ ....|+|-.+|+|||++|...+...++..+.+++++++|.
T Consensus 60 ~~~lR~YQ~eivq~AL------------------------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~ 115 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL------------------------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPT 115 (746)
T ss_pred cccccHHHHHHhHHhh------------------------cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCC
Confidence 3679999999886543 2338899999999999999999999999999999999997
Q ss_pred -CchhhHHHHHHhh
Q psy14708 108 -STIPNWQREFEAW 120 (513)
Q Consensus 108 -~~~~~W~~E~~~~ 120 (513)
.++.|-.+.+..+
T Consensus 116 ~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 116 RPLVNQQIACFSIY 129 (746)
T ss_pred chHHHHHHHHHhhc
Confidence 7777766666544
No 37
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.80 E-value=4.5e-08 Score=88.64 Aligned_cols=67 Identities=31% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc-hh-HHHHHhhc---ccccEEEEeCCCCCCCHHH
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN-CK-LLEGLRLL---HLEHRVLLSGTPLQNNVNE 391 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~-s~-~~~al~~l---~a~~r~~LTGTP~~n~~~d 391 (513)
+.+++++|++.+...... ....+.++||+||+|.+-... .. ....+..+ +....+++||||. ..+.+
T Consensus 95 ~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 467999999998876553 122347899999999986531 22 22223333 2456899999997 55543
No 38
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.78 E-value=8.9e-08 Score=104.95 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=47.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|.++|.+++..+........ ....++.-++|.|||+.++..+...... ...++|++|.
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~-----------------~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~ 294 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDV-----------------PMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTE 294 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCC-----------------CccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHH
Confidence 5799999999988863221110 1124778899999999886554444333 3467777775
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..|+.+++.+++
T Consensus 295 ~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 295 ILAEQHYNSLRNLL 308 (630)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566776666554
No 39
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.63 E-value=3.8e-07 Score=100.79 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=47.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|.+.|.+++.-+......+. ....+|.-++|.|||..++..+...... ...++|++|.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~-----------------~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~ 320 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPK-----------------PMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTE 320 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccC-----------------CceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccH
Confidence 5799999999987763222110 1124677889999999887655444333 3467777775
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..|..+.++++.
T Consensus 321 ~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 321 ILAEQHYENLKKLL 334 (681)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666665553
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.59 E-value=2.3e-07 Score=104.54 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=48.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.++.|.|..++.-++.....++ ....+++-++|.|||.+++..+...... ...++|++|.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~-----------------~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~ 510 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPR-----------------PMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTT 510 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccC-----------------cCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcH
Confidence 4688999999988863222110 1125788899999999887554433333 2578888886
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..|....+.+++
T Consensus 511 ~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 511 LLAQQHFETFKERF 524 (926)
T ss_pred HHHHHHHHHHHHHh
Confidence 56667777766553
No 41
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.57 E-value=6.3e-07 Score=94.28 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCCCCCHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~~n~~~dl~~ 394 (513)
..+|+++|.+.+..... .+..-.++.||+||||.+-..+ .........+. ....+++|||+....+.++..
T Consensus 123 ~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 198 (434)
T PRK11192 123 NQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE 198 (434)
T ss_pred CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH
Confidence 45799999988776432 2233456789999999985433 11122222222 234689999997555555443
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=98.57 E-value=6.4e-07 Score=99.39 Aligned_cols=67 Identities=22% Similarity=0.195 Sum_probs=45.6
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|+|+|.+++..+. .++ ..+++-..|.|||..+...+...... .+++++++|.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~-------------------nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~r 75 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGE-------------------NVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLR 75 (674)
T ss_pred CCCCHHHHHHHHHHh----cCC-------------------cEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechH
Confidence 469999999998653 221 26788889999999886555444333 3567777775
Q ss_pred CchhhHHHHHHhh
Q psy14708 108 STIPNWQREFEAW 120 (513)
Q Consensus 108 ~~~~~W~~E~~~~ 120 (513)
.++.|+.+++.++
T Consensus 76 aLa~q~~~~~~~l 88 (674)
T PRK01172 76 SLAMEKYEELSRL 88 (674)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=6.9e-07 Score=94.79 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=51.1
Q ss_pred CCcEEEecHHHHHhchh---hh-ccccccEEEEccccccCCcch---hHHHHH----hhcccccEEEEeCCCCCCCHHHH
Q psy14708 324 KFHVLITTFEIIISDCL---EL-KDFNWRLCIIDEAHRLKNRNC---KLLEGL----RLLHLEHRVLLSGTPLQNNVNEL 392 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~---~l-~~~~~~~vIvDEaH~~kn~~s---~~~~al----~~l~a~~r~~LTGTP~~n~~~dl 392 (513)
.++++++|.+.+..... .+ ...++.+||+||||.+-..+. ..+..+ ..+.....++|||||......|+
T Consensus 101 ~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di 180 (470)
T TIGR00614 101 KIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDI 180 (470)
T ss_pred CCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHH
Confidence 35688899988765432 23 345788999999999854321 112222 22345568999999988777777
Q ss_pred HHHHhhhCC
Q psy14708 393 FSLLNFLEP 401 (513)
Q Consensus 393 ~~ll~~L~~ 401 (513)
...+.+-.+
T Consensus 181 ~~~l~l~~~ 189 (470)
T TIGR00614 181 LRQLNLKNP 189 (470)
T ss_pred HHHcCCCCC
Confidence 776654433
No 44
>COG4889 Predicted helicase [General function prediction only]
Probab=98.54 E-value=9.5e-08 Score=101.82 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=49.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
-++||||..|+.-..+.+..+.+ |=|-..+|+|||+++|-+...+-. .++|.++|+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~R-------------------GkLIMAcGTGKTfTsLkisEala~----~~iL~LvPSI 216 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDR-------------------GKLIMACGTGKTFTSLKISEALAA----ARILFLVPSI 216 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccC-------------------CcEEEecCCCccchHHHHHHHHhh----hheEeecchH
Confidence 58999999999988876663321 224456788999999887544433 689999997
Q ss_pred CchhhHHHHHH
Q psy14708 108 STIPNWQREFE 118 (513)
Q Consensus 108 ~~~~~W~~E~~ 118 (513)
+++.|--+|+-
T Consensus 217 sLLsQTlrew~ 227 (1518)
T COG4889 217 SLLSQTLREWT 227 (1518)
T ss_pred HHHHHHHHHHh
Confidence 78887666653
No 45
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.53 E-value=8.1e-07 Score=93.93 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=39.5
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcch--hHHHHHhhccc-ccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRNC--KLLEGLRLLHL-EHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l~a-~~r~~LTGTP~ 385 (513)
.++|+++|.+.+..... .+..-+.++||+||||.+-.... .....+..+.. ...+++|+|+.
T Consensus 125 ~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 125 GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred CCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 45799999988865422 12233578999999999854331 22233344433 34799999975
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=98.52 E-value=1.1e-06 Score=98.45 Aligned_cols=68 Identities=25% Similarity=0.262 Sum_probs=45.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|+|+|.+++.-++ ..+ +..+++-..|.|||+.+...+..... ..+++++++|.
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g-------------------~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~r 77 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDG-------------------KNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLR 77 (737)
T ss_pred CcCCHHHHHHHHHHH---hCC-------------------CcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChH
Confidence 469999999987532 111 12678888999999998654433332 34577788885
Q ss_pred CchhhHHHHHHhh
Q psy14708 108 STIPNWQREFEAW 120 (513)
Q Consensus 108 ~~~~~W~~E~~~~ 120 (513)
.++.|+.+++.+|
T Consensus 78 aLa~q~~~~~~~~ 90 (737)
T PRK02362 78 ALASEKFEEFERF 90 (737)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777776654
No 47
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.50 E-value=7.7e-07 Score=98.31 Aligned_cols=72 Identities=31% Similarity=0.209 Sum_probs=45.5
Q ss_pred cccCCcEEEecHHHHHhchhhh--ccccccEEEEccccccCCc-ch-----hHHHHHhhcccccEEEEeCCCCCCCHHHH
Q psy14708 321 DLYKFHVLITTFEIIISDCLEL--KDFNWRLCIIDEAHRLKNR-NC-----KLLEGLRLLHLEHRVLLSGTPLQNNVNEL 392 (513)
Q Consensus 321 ~~~~~~vvitt~~~~~~~~~~l--~~~~~~~vIvDEaH~~kn~-~s-----~~~~al~~l~a~~r~~LTGTP~~n~~~dl 392 (513)
...+++|+++||+.+-...... .....+.||+||+|.+... .. ..+++......-+.+.||+|- .++.|+
T Consensus 119 ~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~ev 196 (766)
T COG1204 119 RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEV 196 (766)
T ss_pred hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHH
Confidence 4667889999999887533222 2235789999999999765 22 222222222224678999996 345554
Q ss_pred HH
Q psy14708 393 FS 394 (513)
Q Consensus 393 ~~ 394 (513)
-.
T Consensus 197 A~ 198 (766)
T COG1204 197 AD 198 (766)
T ss_pred HH
Confidence 44
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.47 E-value=1.3e-06 Score=92.60 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..+|+++|++.+...... +.--+++.||+||+|.+-+.+ ......+..+. ....+++|||+.
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 457999999888764321 222357899999999875433 12223333443 345799999984
No 49
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.44 E-value=2.1e-06 Score=93.65 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=39.5
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..+|+++|.+.+..... .+.--+...||+||||.+-+.. ......+..+. ....+++|+|..
T Consensus 125 ~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p 191 (629)
T PRK11634 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 191 (629)
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC
Confidence 35799999988865432 1222356789999999874433 22334444554 345789999964
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=98.43 E-value=2.3e-06 Score=95.61 Aligned_cols=70 Identities=24% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc--hhHHHHHhhc-ccccEEEEeCCCCCCCHHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLL-HLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l-~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
..+|+++|++.+...... ..--+.++||+||+|.+.... ......+..+ .....++||||.. +..|+...
T Consensus 114 ~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~w 188 (720)
T PRK00254 114 KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAEW 188 (720)
T ss_pred cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHHH
Confidence 457999998876543221 001246899999999985432 2223334444 3456889999984 35665543
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.43 E-value=1.2e-06 Score=100.93 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=41.3
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcc-cccEEEEeCCCCCCCH
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLH-LEHRVLLSGTPLQNNV 389 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~-a~~r~~LTGTP~~n~~ 389 (513)
..+|++.|++.+.... .+ -++++||+||+|++.. .....++.++ ....+++||||+....
T Consensus 703 ~~dIVVgTp~lL~~~v-~~--~~L~lLVIDEahrfG~---~~~e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 703 KIDILIGTHKLLQSDV-KW--KDLGLLIVDEEHRFGV---RHKERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred CCCEEEECHHHHhCCC-CH--hhCCEEEEechhhcch---hHHHHHHhcCCCCcEEEEcCCCCHHHH
Confidence 4579999998765432 12 3578999999999832 2334455553 4578999999987654
No 52
>PTZ00424 helicase 45; Provisional
Probab=98.39 E-value=2.6e-06 Score=88.58 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=39.5
Q ss_pred CcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCCC
Q psy14708 325 FHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPLQ 386 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~~ 386 (513)
.+++++|.+.+..... .+.--++++||+||+|.+-..+ ......+..+. ....+++|+|+..
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 213 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPN 213 (401)
T ss_pred CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCH
Confidence 4688998887654322 1223357899999999975422 23344455553 3457899999753
No 53
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.38 E-value=2.8e-06 Score=89.93 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=43.4
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc-c-cccEEEEeCCCCCCCHH
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL-H-LEHRVLLSGTPLQNNVN 390 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l-~-a~~r~~LTGTP~~n~~~ 390 (513)
..++|+-|..-+..... |+ +..+||+||=|++ +..+...+..- . ..+.++|||||+...+.
T Consensus 365 ~~~ivVGTHALiQd~V~-F~--~LgLVIiDEQHRF---GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 365 EIDIVVGTHALIQDKVE-FH--NLGLVIIDEQHRF---GVHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred CCCEEEEcchhhhccee-ec--ceeEEEEeccccc---cHHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 45688877766655433 33 3468999999999 55555566555 3 47999999999988754
No 54
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.37 E-value=2.1e-06 Score=91.41 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcch--hHHHHHhhcc---cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRNC--KLLEGLRLLH---LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l~---a~~r~~LTGTP~ 385 (513)
..+|+++|.+.+...... +..-+..+||+||+|.+.+.+- .....+..+. ....+++|+|..
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 457999999988653221 1222467899999999865432 1223333332 235789999964
No 55
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.36 E-value=4.7e-06 Score=91.12 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=48.2
Q ss_pred CcEEEecHHHHHhc--hhhhccccccEEEEccccccCCcch---hHHHHHhhc----ccccEEEEeCCCCCCCHHHHHHH
Q psy14708 325 FHVLITTFEIIISD--CLELKDFNWRLCIIDEAHRLKNRNC---KLLEGLRLL----HLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 325 ~~vvitt~~~~~~~--~~~l~~~~~~~vIvDEaH~~kn~~s---~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
.+++++|.+.+... ...+...++.+||+||||.+-..+. ..+..+..+ .....++||||+......++...
T Consensus 116 ~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~ 195 (607)
T PRK11057 116 IKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRL 195 (607)
T ss_pred CcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHH
Confidence 45677777766532 2234455788999999998854321 122233333 34568999999988877777776
Q ss_pred HhhhC
Q psy14708 396 LNFLE 400 (513)
Q Consensus 396 l~~L~ 400 (513)
+.+-.
T Consensus 196 l~l~~ 200 (607)
T PRK11057 196 LGLND 200 (607)
T ss_pred hCCCC
Confidence 65433
No 56
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.36 E-value=5e-06 Score=94.39 Aligned_cols=69 Identities=29% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCcEEEecHHHHHhchhh--h--ccccccEEEEccccccCCcchh--HHHHHhhc-----ccccEEEEeCCCCCCCHHHH
Q psy14708 324 KFHVLITTFEIIISDCLE--L--KDFNWRLCIIDEAHRLKNRNCK--LLEGLRLL-----HLEHRVLLSGTPLQNNVNEL 392 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l--~~~~~~~vIvDEaH~~kn~~s~--~~~al~~l-----~a~~r~~LTGTP~~n~~~dl 392 (513)
..+|++||.+.+...... + .--+.+.||+||+|.+-+.... ....+..+ ....++++|||.- ++.++
T Consensus 146 ~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~v 223 (876)
T PRK13767 146 PPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEV 223 (876)
T ss_pred CCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHH
Confidence 457999999988643211 1 0124578999999998654321 22222222 2346899999973 34444
Q ss_pred HH
Q psy14708 393 FS 394 (513)
Q Consensus 393 ~~ 394 (513)
..
T Consensus 224 a~ 225 (876)
T PRK13767 224 AK 225 (876)
T ss_pred HH
Confidence 43
No 57
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.34 E-value=3.6e-06 Score=88.23 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=39.1
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhcc---cccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH---LEHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~---a~~r~~LTGTP~~ 386 (513)
.++|++.|.+.+..... .+.--.+..||+||||.+-... ......+..+. ....+++|+|...
T Consensus 133 ~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~ 202 (423)
T PRK04837 133 GVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY 202 (423)
T ss_pred CCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH
Confidence 35799999998866432 2233457899999999985433 12222333343 2235789999753
No 58
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.32 E-value=4.5e-06 Score=93.29 Aligned_cols=63 Identities=30% Similarity=0.350 Sum_probs=47.5
Q ss_pred ccCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhccc-ccEEEEeCCCCCCCHH
Q psy14708 322 LYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHL-EHRVLLSGTPLQNNVN 390 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a-~~r~~LTGTP~~n~~~ 390 (513)
....||||-|...+.++...- +-.+|||||=|++. -..-..++.|++ -..+-|||||+...+.
T Consensus 695 ~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFG---Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 695 EGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFG---VKHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred cCCccEEEechHhhCCCcEEe---cCCeEEEechhhcC---ccHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 356789999999988875532 34799999999994 344556777755 4789999999988654
No 59
>PTZ00110 helicase; Provisional
Probab=98.31 E-value=3.5e-06 Score=90.84 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=38.9
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcch--hHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRNC--KLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..+|+++|.+.+...... +.--+..+||+||||.+-..+. ...+.+..+. ....+++|||..
T Consensus 253 ~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p 319 (545)
T PTZ00110 253 GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP 319 (545)
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC
Confidence 346999999877654321 1123467899999999865332 2233344443 345789999963
No 60
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.30 E-value=6.1e-06 Score=89.40 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcch--hHHHHHhhcc---cccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRNC--KLLEGLRLLH---LEHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l~---a~~r~~LTGTP~~ 386 (513)
.++|+++|.+.+...... +......+||+||+|.+-...- .....+..+. ....+++|+|...
T Consensus 134 ~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~ 204 (572)
T PRK04537 134 GVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH 204 (572)
T ss_pred CCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccH
Confidence 357999999888764322 2233467899999998744221 1222333343 3457899999753
No 61
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.30 E-value=6.9e-06 Score=88.18 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=41.5
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhcccccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
..+++++|.+.+..... .+..-+...||+||||.+-..+ ......+..+.....+++|||...
T Consensus 246 ~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~ 312 (518)
T PLN00206 246 GVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP 312 (518)
T ss_pred CCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH
Confidence 35799999988765322 1222346789999999985432 223344455566778999999753
No 62
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.28 E-value=4e-06 Score=91.62 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=49.4
Q ss_pred CCcEEEecHHHHHhc--hhhhccccccEEEEccccccCCcch---hHHHHH----hhcccccEEEEeCCCCCCCHHHHHH
Q psy14708 324 KFHVLITTFEIIISD--CLELKDFNWRLCIIDEAHRLKNRNC---KLLEGL----RLLHLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 324 ~~~vvitt~~~~~~~--~~~l~~~~~~~vIvDEaH~~kn~~s---~~~~al----~~l~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
..++++.|.+.+... ...+...+..+||+||||.+-..+. ..+..+ ..+.....+++|||+......++..
T Consensus 103 ~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~ 182 (591)
T TIGR01389 103 ELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRE 182 (591)
T ss_pred CCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHH
Confidence 345777777777542 2335556789999999999853221 112222 2334455899999998887778777
Q ss_pred HHhhh
Q psy14708 395 LLNFL 399 (513)
Q Consensus 395 ll~~L 399 (513)
.+..-
T Consensus 183 ~l~~~ 187 (591)
T TIGR01389 183 LLRLA 187 (591)
T ss_pred HcCCC
Confidence 66543
No 63
>PRK09401 reverse gyrase; Reviewed
Probab=98.28 E-value=8e-06 Score=94.52 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=30.4
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~k 359 (513)
.++|+++|.+.+.+....+....++.||+||||.+-
T Consensus 179 ~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 179 DFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred CCCEEEECHHHHHHHHHhccccccCEEEEEChHHhh
Confidence 468999999999887666666679999999999974
No 64
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.22 E-value=8.6e-06 Score=89.88 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=47.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
..|.++|.+++..+.... + ..-.+|.-..|.|||...+.++...... .+.+||++|.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~--~------------------~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~ 200 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA--G------------------FSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEI 200 (679)
T ss_pred CCCCHHHHHHHHHHHhcc--C------------------CCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcH
Confidence 579999999998876321 0 1115677788999999988776655444 3466777775
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..|+.+.+++.+
T Consensus 201 ~L~~Q~~~~l~~~f 214 (679)
T PRK05580 201 ALTPQMLARFRARF 214 (679)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666665543
No 65
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.21 E-value=1.1e-05 Score=89.86 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=41.9
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
..|+|||.+++..++ ++++ .++.-..|.|||...+--+......++....|+++|.
T Consensus 35 ~~p~~~Q~~ai~~il----~G~n-------------------vvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Ptr 91 (742)
T TIGR03817 35 HRPWQHQARAAELAH----AGRH-------------------VVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTK 91 (742)
T ss_pred CcCCHHHHHHHHHHH----CCCC-------------------EEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChH
Confidence 369999999998776 2322 5667778889998765433333223334466777775
Q ss_pred CchhhHHHHHHh
Q psy14708 108 STIPNWQREFEA 119 (513)
Q Consensus 108 ~~~~~W~~E~~~ 119 (513)
.+..|=..++++
T Consensus 92 aLa~q~~~~l~~ 103 (742)
T TIGR03817 92 ALAADQLRAVRE 103 (742)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 66
>KOG0298|consensus
Probab=98.09 E-value=1.2e-06 Score=97.24 Aligned_cols=106 Identities=26% Similarity=0.318 Sum_probs=84.3
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchh--------------------------------------------
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ-------------------------------------------- 65 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~-------------------------------------------- 65 (513)
-..++|...+.|++-....+.++.++|+||+||+..
T Consensus 286 ~~l~~~~~~~~~~l~~e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~~~~s~~~~~~~~~~~~~e~~~~r~nq~~~~ 365 (1394)
T KOG0298|consen 286 LKLCFQFYSFEEELPKESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDSYRNSYLHQRLEEYSDEVELKRSRINQKDEV 365 (1394)
T ss_pred hccceecccccccchhccCCCcchHHHHhhhHHHHHHHHHHhccCCCcccccchHHHHHHHHHhhhhHhHHhHhhhhhHH
Confidence 456789999999987777777789999999999886
Q ss_pred ---hhhhcc---cccccCCCCchhhHHHHHHhhhhc----------------CCCCCeEEecCCCchhhHHHHHHhhcC-
Q psy14708 66 ---SLTRNC---ILADEMGLGKTIQSLTFVDAVFKT----------------GIRGPFLVIAPLSTIPNWQREFEAWTD- 122 (513)
Q Consensus 66 ---~~~~Gg---iLademGlGKT~~~iali~~~~~~----------------~~~~~~liv~P~~~~~~W~~E~~~~~~- 122 (513)
.-..+| +++||||+|||...++++...... ...+.+|||||+.++.||-.|+.+...
T Consensus 366 ~~~~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~ 445 (1394)
T KOG0298|consen 366 LCSGDKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISS 445 (1394)
T ss_pred hhcCCccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccc
Confidence 112255 999999999999999987554221 247889999999999999999999985
Q ss_pred -CcEEEEcceeeEE
Q psy14708 123 -LNVIVYHATFVVL 135 (513)
Q Consensus 123 -~~~~~~~~~~~~~ 135 (513)
..+..|.|.+...
T Consensus 446 ~lKv~~Y~Girk~~ 459 (1394)
T KOG0298|consen 446 LLKVLLYFGIRKTF 459 (1394)
T ss_pred cceEEEEechhhhc
Confidence 3677777765443
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.09 E-value=1.1e-05 Score=82.61 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTD 122 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~~ 122 (513)
++.-..|.|||..++..+......+...++++++|. .++.|..+.+..+++
T Consensus 3 vi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~ 54 (358)
T TIGR01587 3 VIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFG 54 (358)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhC
Confidence 567789999999998887766666667788999995 777888888777654
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.06 E-value=3.4e-05 Score=86.67 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=42.0
Q ss_pred cCCcEEEecHHHHHhch------hhhccccccEEEEccccccCCc-chhHHHHHhhcc--------cccEEEEeCCC
Q psy14708 323 YKFHVLITTFEIIISDC------LELKDFNWRLCIIDEAHRLKNR-NCKLLEGLRLLH--------LEHRVLLSGTP 384 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~------~~l~~~~~~~vIvDEaH~~kn~-~s~~~~al~~l~--------a~~r~~LTGTP 384 (513)
...+|++|+|+.+.... ..+..-++..||+||+|..++- +|..+..++.|. ....++.|||-
T Consensus 166 ~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 166 NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc
Confidence 45679999999987721 1122334789999999999874 445555556652 23458888885
No 69
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.04 E-value=5.7e-06 Score=82.13 Aligned_cols=88 Identities=33% Similarity=0.554 Sum_probs=62.6
Q ss_pred hHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCC---CeEEecCCCch
Q psy14708 34 YQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRG---PFLVIAPLSTI 110 (513)
Q Consensus 34 ~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~---~~liv~P~~~~ 110 (513)
||++||.||+..+ ....+.......+|||||||||+|||+++++++..+....+.. ++|||||.+++
T Consensus 1 ~Q~~~v~~m~~~~----------~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~ 70 (299)
T PF00176_consen 1 HQLEAVRWMLDRE----------LVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL 70 (299)
T ss_dssp HHHHHHHHHHHHH--------------TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH
T ss_pred CHHHHHHHHHHHh----------hhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh
Confidence 8999999999776 1111123344578999999999999999999998777665544 69999999999
Q ss_pred hhHHHHHHhhcC---CcEEEEcce
Q psy14708 111 PNWQREFEAWTD---LNVIVYHAT 131 (513)
Q Consensus 111 ~~W~~E~~~~~~---~~~~~~~~~ 131 (513)
.+|..|+.+|.+ ..+..+.+.
T Consensus 71 ~~W~~E~~~~~~~~~~~v~~~~~~ 94 (299)
T PF00176_consen 71 SQWKEEIEKWFDPDSLRVIIYDGD 94 (299)
T ss_dssp HHHHHHHHHHSGT-TS-EEEESSS
T ss_pred hhhhhhhccccccccccccccccc
Confidence 999999999983 455555554
No 70
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.99 E-value=3.8e-06 Score=95.10 Aligned_cols=61 Identities=44% Similarity=0.775 Sum_probs=46.0
Q ss_pred cccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC-CcEEEEcce
Q psy14708 53 ILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHAT 131 (513)
Q Consensus 53 ~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~-~~~~~~~~~ 131 (513)
|||||||+|||++.++..+.|...-|. . +|+|||||.+++.||.+|+.+|.+ ..+..+++.
T Consensus 192 ILADEMGLGKTlQaIalL~~L~~~~~~---------------~---gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~ 253 (1033)
T PLN03142 192 ILADEMGLGKTLQTISLLGYLHEYRGI---------------T---GPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGN 253 (1033)
T ss_pred EEEeCCCccHHHHHHHHHHHHHHhcCC---------------C---CCEEEEeChHHHHHHHHHHHHHCCCCceEEEeCC
Confidence 789999999999987554443332221 1 478999999999999999999997 555555553
No 71
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=2.8e-05 Score=82.84 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=33.3
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhcC
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTD 122 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~~ 122 (513)
|.-..|.|||.+.+.++...... .+.+||++|. .+..|+.+.+++.++
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f~ 50 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRFG 50 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 44578999999988777665544 3467777775 666777777665544
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.93 E-value=0.00012 Score=74.70 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=32.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
.+++-.+|.|||..++..+.. ...++++++|. .++.+|.+.+..+.
T Consensus 17 ~~i~apTGsGKT~~~~~~~l~-----~~~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 17 IFNTAPTGAGKTLAWLTPLLH-----GENDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred EEEECCCCCCHHHHHHHHHHH-----cCCCEEEEeChHHHHHHHHHHHHHHH
Confidence 467888999999987655442 23467888885 67777877777664
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.93 E-value=7.5e-05 Score=81.77 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=33.4
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhh
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAW 120 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~ 120 (513)
.|+|.....|.|||++++..+...... ...++||+|+ .+..+|.+++..+
T Consensus 84 ~G~Iaem~TGeGKTLta~Lpa~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 84 QGNIAEMKTGEGKTLTATMPLYLNALT--GKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred CCceeEecCCcchHHHHHHHHHHHhhc--CCceEEeCCCHHHHHHHHHHHHHH
Confidence 457778889999999987554333333 2357888886 5667777665444
No 74
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.81 E-value=0.00013 Score=83.32 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=39.5
Q ss_pred cEEEecHHHHHhchhh----hccccccEEEEccccccCCcchhHHHHH-hhcccccEEEEeCCCCCCC
Q psy14708 326 HVLITTFEIIISDCLE----LKDFNWRLCIIDEAHRLKNRNCKLLEGL-RLLHLEHRVLLSGTPLQNN 388 (513)
Q Consensus 326 ~vvitt~~~~~~~~~~----l~~~~~~~vIvDEaH~~kn~~s~~~~al-~~l~a~~r~~LTGTP~~n~ 388 (513)
.+++||-+.+...... ...-..-.||+||||+.-.. ...+.+ ..++.-.-++.||||+...
T Consensus 352 ~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G--~~~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 352 KIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG--ELAKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred cEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc--HHHHHHHHHhccceEEEeeCCccccc
Confidence 3888888888775432 22334558889999997332 222332 3345567789999999654
No 75
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.77 E-value=0.00022 Score=80.64 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=49.3
Q ss_pred cCCcEEEecHHHHHhch---hhh---c-cccccEEEEccccccCCcch---hHHHHH----hhcccccEEEEeCCCCCCC
Q psy14708 323 YKFHVLITTFEIIISDC---LEL---K-DFNWRLCIIDEAHRLKNRNC---KLLEGL----RLLHLEHRVLLSGTPLQNN 388 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~---~~l---~-~~~~~~vIvDEaH~~kn~~s---~~~~al----~~l~a~~r~~LTGTP~~n~ 388 (513)
..++++++|.+.+.... ..+ . .....+|||||||.+-..+. ..++.+ ..+.....++||||....-
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V 630 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASV 630 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHH
Confidence 34678999998875421 112 1 22368899999999744321 112222 2234556899999998888
Q ss_pred HHHHHHHHhhhC
Q psy14708 389 VNELFSLLNFLE 400 (513)
Q Consensus 389 ~~dl~~ll~~L~ 400 (513)
..|+...+.+..
T Consensus 631 ~eDI~~~L~l~~ 642 (1195)
T PLN03137 631 KEDVVQALGLVN 642 (1195)
T ss_pred HHHHHHHcCCCC
Confidence 888877765443
No 76
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.77 E-value=0.00042 Score=77.51 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=37.4
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhh
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPN 112 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~ 112 (513)
..-.+..+.|+|||.+++.++..+........++|+||...+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~e 103 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKE 103 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 35667889999999999999999999988899999999854443
No 77
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.76 E-value=0.00019 Score=62.20 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=33.4
Q ss_pred cEEEecHHHHHhchh-hhccccccEEEEccccccCCcchhHHH-HHhhc---ccccEEEEeCCCCCC
Q psy14708 326 HVLITTFEIIISDCL-ELKDFNWRLCIIDEAHRLKNRNCKLLE-GLRLL---HLEHRVLLSGTPLQN 387 (513)
Q Consensus 326 ~vvitt~~~~~~~~~-~l~~~~~~~vIvDEaH~~kn~~s~~~~-al~~l---~a~~r~~LTGTP~~n 387 (513)
.|-+.+|.++.+... .-...+|+.||+||+|.. ++.+...+ .+..+ .....++||+||.-.
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 366777777766432 234468999999999985 22222221 12222 123579999999743
No 78
>KOG4439|consensus
Probab=97.75 E-value=2.3e-05 Score=82.46 Aligned_cols=70 Identities=37% Similarity=0.555 Sum_probs=48.6
Q ss_pred ccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC-CCCCeEEecCCCchhhHHHHHHhhcC---CcEEE
Q psy14708 52 CILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD---LNVIV 127 (513)
Q Consensus 52 ~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~-~~~~~liv~P~~~~~~W~~E~~~~~~---~~~~~ 127 (513)
+||+|+||+|||+.++. -|+.+.- + -......+ ...++|||||.+++.||..|+.+-.. ..|..
T Consensus 348 GILaddmGLGKTlsmis--lil~qK~---------~-~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~ 415 (901)
T KOG4439|consen 348 GILADDMGLGKTLSMIS--LILHQKA---------A-RKAREKKGESASKTLIICPASLIHQWEAEVARRLEQNALSVYL 415 (901)
T ss_pred cccccccccccchHHHH--HHHHHHH---------H-HHhhcccccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEE
Confidence 58999999999997763 2222221 1 11111122 23369999999999999999998874 77888
Q ss_pred Ecceee
Q psy14708 128 YHATFV 133 (513)
Q Consensus 128 ~~~~~~ 133 (513)
+|++..
T Consensus 416 ~HG~n~ 421 (901)
T KOG4439|consen 416 YHGPNK 421 (901)
T ss_pred ecCCcc
Confidence 898754
No 79
>PRK09694 helicase Cas3; Provisional
Probab=97.74 E-value=0.00022 Score=80.06 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=38.8
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAW 120 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~ 120 (513)
.||-..||.|||-.++.++..+...+....+++..|. .+..+=...+.+|
T Consensus 304 ~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 304 TIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 6888999999999999988776667777899999997 4455555555544
No 80
>KOG1002|consensus
Probab=97.70 E-value=1.9e-05 Score=79.85 Aligned_cols=60 Identities=45% Similarity=0.744 Sum_probs=49.3
Q ss_pred ccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC--CcEEE
Q psy14708 50 RNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD--LNVIV 127 (513)
Q Consensus 50 ~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~--~~~~~ 127 (513)
+|+|||||||+|||+|.++ -+|++--|. ++|||||...+.||..|+.++.. ..+.+
T Consensus 205 ~GGiLADEMGMGKTIQtIa--Lllae~~ra--------------------~tLVvaP~VAlmQW~nEI~~~T~gslkv~~ 262 (791)
T KOG1002|consen 205 AGGILADEMGMGKTIQTIA--LLLAEVDRA--------------------PTLVVAPTVALMQWKNEIERHTSGSLKVYI 262 (791)
T ss_pred ccceehhhhccchHHHHHH--HHHhccccC--------------------CeeEEccHHHHHHHHHHHHHhccCceEEEE
Confidence 5899999999999999885 455533332 36999999999999999999984 77888
Q ss_pred Ecce
Q psy14708 128 YHAT 131 (513)
Q Consensus 128 ~~~~ 131 (513)
+||.
T Consensus 263 YhG~ 266 (791)
T KOG1002|consen 263 YHGA 266 (791)
T ss_pred Eecc
Confidence 8885
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.63 E-value=0.00027 Score=82.25 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.5
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKN 360 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn 360 (513)
.++|+++|.+.+......+.. +++.+|+||||.+-.
T Consensus 178 ~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 178 DFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 478999999999876665554 799999999999844
No 82
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.60 E-value=0.00032 Score=77.36 Aligned_cols=73 Identities=32% Similarity=0.237 Sum_probs=47.7
Q ss_pred cCCcEEEecHHHHHhch------hhhccccccEEEEccccccCCcc--hhHHHHHhhc---c-cccEEEEeCCCCCCCHH
Q psy14708 323 YKFHVLITTFEIIISDC------LELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLL---H-LEHRVLLSGTPLQNNVN 390 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~------~~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l---~-a~~r~~LTGTP~~n~~~ 390 (513)
..++|++||.+++.-.. ..|.++ ..|||||.|.+.+.+ ...+-.+..| . .--|+.||+|=- ++
T Consensus 122 ~PPdILiTTPEsL~lll~~~~~r~~l~~v--r~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~- 196 (814)
T COG1201 122 NPPHILITTPESLAILLNSPKFRELLRDV--RYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG--PP- 196 (814)
T ss_pred CCCcEEEeChhHHHHHhcCHHHHHHhcCC--cEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC--CH-
Confidence 45789999999987642 234444 469999999997644 3334444444 3 346999999953 44
Q ss_pred HHHHHHhhhCCC
Q psy14708 391 ELFSLLNFLEPQ 402 (513)
Q Consensus 391 dl~~ll~~L~~~ 402 (513)
.-..+||...
T Consensus 197 --~~varfL~g~ 206 (814)
T COG1201 197 --EEVAKFLVGF 206 (814)
T ss_pred --HHHHHHhcCC
Confidence 4455666554
No 83
>KOG1015|consensus
Probab=97.58 E-value=3e-05 Score=83.89 Aligned_cols=40 Identities=45% Similarity=0.674 Sum_probs=31.4
Q ss_pred hcCCccccccccCCCCcchhhhhh--cccccccCCCCchhhHH
Q psy14708 46 WFNGRNCILADEMGLGKTIQSLTR--NCILADEMGLGKTIQSL 86 (513)
Q Consensus 46 ~~~~~~~~l~~e~g~gkt~~~~~~--GgiLademGlGKT~~~i 86 (513)
-..|.|||||.=||||||+|+++. -.++|+..|+ ||+-++
T Consensus 693 ~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~-ktaLvV 734 (1567)
T KOG1015|consen 693 KSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGF-KTALVV 734 (1567)
T ss_pred CCCCcchHHHHhhcccceehhhHHHHHHHHhhccCC-ceEEEE
Confidence 357889999999999999997554 6788888775 665443
No 84
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.43 E-value=0.001 Score=73.78 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=44.6
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC-CCCCeEEecC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAP 106 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~-~~~~~liv~P 106 (513)
+.+++|+|.+++.-++ .++.. -++.-..|+|||....+++....... ...++++++|
T Consensus 13 G~~PtpiQ~~~i~~il----~G~~~------------------v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vP 70 (844)
T TIGR02621 13 GYSPFPWQLSLAERFV----AGQPP------------------ESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVN 70 (844)
T ss_pred CCCCCHHHHHHHHHHH----cCCCc------------------ceEecCCCCcccHHHHHhhccccccccccceEEEeCc
Confidence 3458999999998765 22211 23456889999976544333322222 2334444668
Q ss_pred C-CchhhHHHHHHhhc
Q psy14708 107 L-STIPNWQREFEAWT 121 (513)
Q Consensus 107 ~-~~~~~W~~E~~~~~ 121 (513)
. .++.|-.++++++.
T Consensus 71 tReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 71 RRTVVDQVTEEAEKIG 86 (844)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6 77788888888875
No 85
>KOG0350|consensus
Probab=97.41 E-value=0.00067 Score=69.20 Aligned_cols=79 Identities=19% Similarity=0.129 Sum_probs=47.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC--CCCCeEEecC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAP 106 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~--~~~~~liv~P 106 (513)
..++|-|...+-|+++..+. +.....+--+++...|.|||+.=.-=|.....+. +.-+.+||+|
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~--------------p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivP 223 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRS--------------PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVP 223 (620)
T ss_pred ccccchHHHHHHHHHHhhcC--------------CCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEee
Confidence 46888898888888754331 1111234456778899999986332233333332 3345577777
Q ss_pred C-CchhhHHHHHHhhc
Q psy14708 107 L-STIPNWQREFEAWT 121 (513)
Q Consensus 107 ~-~~~~~W~~E~~~~~ 121 (513)
. -++.|-.++|.+|.
T Consensus 224 tr~L~~QV~~~f~~~~ 239 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLN 239 (620)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5 55556667776664
No 86
>KOG1513|consensus
Probab=97.27 E-value=0.0033 Score=67.47 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=69.1
Q ss_pred cEEEEccccccCC-------cchhHHHHHhhc----ccccEEEEeCCCCCCCHHHHHHHHhhhCCCC------CCChHHH
Q psy14708 348 RLCIIDEAHRLKN-------RNCKLLEGLRLL----HLEHRVLLSGTPLQNNVNELFSLLNFLEPQQ------FSNNEAF 410 (513)
Q Consensus 348 ~~vIvDEaH~~kn-------~~s~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~------~~~~~~f 410 (513)
.+||+||+|..|| ..+++.+++..| ...+.+..|+|-.. |=-+|+...+.++ |+.+.+|
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eF 482 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEF 482 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHH
Confidence 4788999999998 445566666555 45567788888653 2233444444443 4556666
Q ss_pred HHHhcCcc-cHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHH
Q psy14708 411 MSEFGQLK-TESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILER 472 (513)
Q Consensus 411 ~~~~~~~~-~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~ 472 (513)
.....+.. ....+-++-..++.+.+-| + ..+-.....+..|+||++-+..|+.-.+-
T Consensus 483 i~AvEkRGvGAMEIVAMDMK~rGmYiAR---Q--LSFkgVsFrieEv~ls~eF~k~Yn~a~~L 540 (1300)
T KOG1513|consen 483 IHAVEKRGVGAMEIVAMDMKLRGMYIAR---Q--LSFKGVSFRIEEVPLSKEFRKVYNRAAEL 540 (1300)
T ss_pred HHHHHhcCCceeeeeehhhhhhhhhhhh---h--ccccCceEEEEecccCHHHHHHHHHHHHH
Confidence 66543211 1111112222334433333 1 13567888999999999999999875543
No 87
>PRK14701 reverse gyrase; Provisional
Probab=97.26 E-value=0.0006 Score=81.34 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=27.9
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~k 359 (513)
.++|+++|.+.+......+...+++++|+||||.+-
T Consensus 178 ~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 178 DFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred CCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 467999999988765544444678999999999873
No 88
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.25 E-value=0.002 Score=75.81 Aligned_cols=69 Identities=25% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcc--hhHHHHHhhc-----ccccEEEEeCCCCCCCHHHHH
Q psy14708 324 KFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLL-----HLEHRVLLSGTPLQNNVNELF 393 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l-----~a~~r~~LTGTP~~n~~~dl~ 393 (513)
..+|++||++.+...... ..--+.+.|||||+|.+.+.+ +.....+..| ....+++||+|-- ++.++.
T Consensus 99 ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~--n~eevA 176 (1490)
T PRK09751 99 PPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVR--SASDVA 176 (1490)
T ss_pred CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCC--CHHHHH
Confidence 457999999988653211 111245789999999997643 2222333333 2346899999973 356655
Q ss_pred H
Q psy14708 394 S 394 (513)
Q Consensus 394 ~ 394 (513)
.
T Consensus 177 ~ 177 (1490)
T PRK09751 177 A 177 (1490)
T ss_pred H
Confidence 4
No 89
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.08 E-value=0.0039 Score=69.22 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=22.7
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
.|-|.....|-|||+++...+...... ...++|++|+
T Consensus 92 ~G~Iaem~TGeGKTL~a~lp~~l~al~--G~~v~VvTpt 128 (790)
T PRK09200 92 EGNIAEMQTGEGKTLTATMPLYLNALE--GKGVHLITVN 128 (790)
T ss_pred CCceeeecCCCcchHHHHHHHHHHHHc--CCCeEEEeCC
Confidence 456777788999999876544332222 3355555555
No 90
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.08 E-value=0.0025 Score=63.10 Aligned_cols=73 Identities=19% Similarity=0.119 Sum_probs=46.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCC----CCeEEe
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIR----GPFLVI 104 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~----~~~liv 104 (513)
.+.||.|++-+.-+.....+++. +++--..|+|||+..|..+......... .++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~-------------------~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~ 67 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKI-------------------GILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYL 67 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCc-------------------EEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEE
Confidence 45699999977777655544321 5566678999999988766443333322 377777
Q ss_pred cCC-CchhhHHHHHHhh
Q psy14708 105 APL-STIPNWQREFEAW 120 (513)
Q Consensus 105 ~P~-~~~~~W~~E~~~~ 120 (513)
.+. ....+-..++++.
T Consensus 68 t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 68 SRTVSEIEKRLEELRKL 84 (289)
T ss_pred eccHHHHHHHHHHHHhc
Confidence 775 4444555566554
No 91
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.08 E-value=0.0025 Score=63.10 Aligned_cols=73 Identities=19% Similarity=0.119 Sum_probs=46.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCC----CCeEEe
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIR----GPFLVI 104 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~----~~~liv 104 (513)
.+.||.|++-+.-+.....+++. +++--..|+|||+..|..+......... .++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~-------------------~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~ 67 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKI-------------------GILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYL 67 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCc-------------------EEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEE
Confidence 45699999977777655544321 5566678999999988766443333322 377777
Q ss_pred cCC-CchhhHHHHHHhh
Q psy14708 105 APL-STIPNWQREFEAW 120 (513)
Q Consensus 105 ~P~-~~~~~W~~E~~~~ 120 (513)
.+. ....+-..++++.
T Consensus 68 t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 68 SRTVSEIEKRLEELRKL 84 (289)
T ss_pred eccHHHHHHHHHHHHhc
Confidence 775 4444555566554
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0036 Score=70.53 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 27 NDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 27 ~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
-+.+|-|+|++++.-+-+ ..+.+.|-..|.|||+.+-.++....+.+ .++....|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler-----------------------~esVlV~ApTssGKTvVaeyAi~~al~~~--qrviYTsP 170 (1041)
T COG4581 116 YPFELDPFQQEAIAILER-----------------------GESVLVCAPTSSGKTVVAEYAIALALRDG--QRVIYTSP 170 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC-----------------------CCcEEEEccCCCCcchHHHHHHHHHHHcC--CceEeccc
Confidence 457899999999976642 11367888999999999988887776665 34777788
Q ss_pred -CCchhhHHHHHHhh
Q psy14708 107 -LSTIPNWQREFEAW 120 (513)
Q Consensus 107 -~~~~~~W~~E~~~~ 120 (513)
+.+..|=.+++..-
T Consensus 171 IKALsNQKyrdl~~~ 185 (1041)
T COG4581 171 IKALSNQKYRDLLAK 185 (1041)
T ss_pred hhhhhhhHHHHHHHH
Confidence 46666766665443
No 93
>KOG0947|consensus
Probab=97.03 E-value=0.0016 Score=71.29 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhc
Q psy14708 22 SPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 22 ~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~ 95 (513)
.|...-+..|-+||++|+-.|.+ |- ..+.|-....|||++|=..|+....+
T Consensus 289 e~a~~~pFelD~FQk~Ai~~ler--------------g~---------SVFVAAHTSAGKTvVAEYAialaq~h 339 (1248)
T KOG0947|consen 289 EMALIYPFELDTFQKEAIYHLER--------------GD---------SVFVAAHTSAGKTVVAEYAIALAQKH 339 (1248)
T ss_pred hHHhhCCCCccHHHHHHHHHHHc--------------CC---------eEEEEecCCCCcchHHHHHHHHHHhh
Confidence 33444456788899999976642 11 15677888899999987776665554
No 94
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.03 E-value=0.0054 Score=67.36 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=26.6
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcc--cccEEEEeCCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLH--LEHRVLLSGTPLQ 386 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~--a~~r~~LTGTP~~ 386 (513)
++..||+||||..-..+......++.+. .+..+++|||+..
T Consensus 291 ~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~ 333 (675)
T PHA02653 291 DYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED 333 (675)
T ss_pred cCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH
Confidence 5779999999997544433333333332 2357999999843
No 95
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.99 E-value=0.0069 Score=57.39 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=45.2
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh------hcCCCCCeEE
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF------KTGIRGPFLV 103 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~------~~~~~~~~li 103 (513)
+|-+.|..|+..++. ... -.++.-..|+|||.++.+++.... .....+++||
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~------------------~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~ 58 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNG------------------ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILV 58 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-------------------EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEE
T ss_pred CCCHHHHHHHHHHHc----CCC------------------CEEEECCCCCChHHHHHHHHHHhccchhhhhhhcccccee
Confidence 367899999976651 110 166777889999988888777762 3667889999
Q ss_pred ecCC-CchhhHHHHHHh
Q psy14708 104 IAPL-STIPNWQREFEA 119 (513)
Q Consensus 104 v~P~-~~~~~W~~E~~~ 119 (513)
++|. ..+.+-.+.+.+
T Consensus 59 ~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 59 VSPSNAAVDNILERLKK 75 (236)
T ss_dssp EESSHHHHHHHHHHHHC
T ss_pred ecCCchhHHHHHHHHHh
Confidence 9997 555666666655
No 96
>KOG0952|consensus
Probab=96.97 E-value=0.0025 Score=70.50 Aligned_cols=63 Identities=32% Similarity=0.411 Sum_probs=39.6
Q ss_pred ccEEEEccccccCCcchhHH-----HHHhhc----ccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHh
Q psy14708 347 WRLCIIDEAHRLKNRNCKLL-----EGLRLL----HLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~-----~al~~l----~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~~ 414 (513)
..+||+||.|.+..+..... +.++.. ..-+.++||||-+ ++. .++.||+.++....-.|-..|
T Consensus 239 V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlP--N~e---DvA~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 239 VRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLP--NYE---DVARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred eeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCC--CHH---HHHHHhcCCCccceeeecccc
Confidence 56999999999988765444 333222 3445689999964 233 456677776554444444444
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.94 E-value=0.00049 Score=75.12 Aligned_cols=37 Identities=19% Similarity=0.030 Sum_probs=22.0
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
.|.|.-...|.|||+++...+...... ...+.|++|+
T Consensus 70 ~G~Iaem~TGeGKTLva~lpa~l~aL~--G~~V~VvTpt 106 (745)
T TIGR00963 70 KGKIAEMKTGEGKTLTATLPAYLNALT--GKGVHVVTVN 106 (745)
T ss_pred CCceeeecCCCccHHHHHHHHHHHHHh--CCCEEEEcCC
Confidence 445566788999999775433222222 2356666666
No 98
>KOG0331|consensus
Probab=96.91 E-value=0.0087 Score=62.78 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=49.6
Q ss_pred cCCcEEEecHHHHHhchhh--hccccccEEEEccccccCC--cchhHHHHHhhc-cccc-EEEEeCCCCCCCHHHHHHHH
Q psy14708 323 YKFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKN--RNCKLLEGLRLL-HLEH-RVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn--~~s~~~~al~~l-~a~~-r~~LTGTP~~n~~~dl~~ll 396 (513)
...+|++.|...+...... +...+...+|+|||.++-. -..+..+.+.++ +... .++-|+|=. .++..+.
T Consensus 214 ~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp----~~v~~lA 289 (519)
T KOG0331|consen 214 RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWP----KEVRQLA 289 (519)
T ss_pred cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeecc----HHHHHHH
Confidence 3567999999999886543 3444567899999999844 445666778888 4443 677788742 4444444
Q ss_pred h-hhC
Q psy14708 397 N-FLE 400 (513)
Q Consensus 397 ~-~L~ 400 (513)
. ||.
T Consensus 290 ~~fl~ 294 (519)
T KOG0331|consen 290 EDFLN 294 (519)
T ss_pred HHHhc
Confidence 3 444
No 99
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.86 E-value=0.007 Score=56.33 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=35.7
Q ss_pred chhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 31 Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
+-+.|...+.-|+. .. -.++.-..|+|||+.|++........+...+++++-|..
T Consensus 5 ~~~~Q~~~~~al~~----~~-------------------~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 5 KNEEQKFALDALLN----ND-------------------LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp -SHHHHHHHHHHHH-----S-------------------EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCHHHHHHHHHHHh----CC-------------------eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 34579998887761 11 144555678899999999988777777777777766654
No 100
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.71 E-value=0.014 Score=66.58 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=45.5
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+.+.||+|.+.+..+.....+++ .+++-...|+|||+..+.-+..... ..++++|.+|.
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~~-------------------~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t 301 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHSE-------------------KSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNT 301 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccCC-------------------cEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCc
Confidence 35689999998877765444322 1345557889999887654433322 34688888886
Q ss_pred -CchhhHHH-HHHh
Q psy14708 108 -STIPNWQR-EFEA 119 (513)
Q Consensus 108 -~~~~~W~~-E~~~ 119 (513)
.+..|+.. ++..
T Consensus 302 ~~Lq~Ql~~~~~~~ 315 (850)
T TIGR01407 302 KVLQSQLLEKDIPL 315 (850)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677654 5543
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.68 E-value=0.011 Score=66.01 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred CcEEEecHHHH-Hh---ch------hhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHH
Q psy14708 325 FHVLITTFEII-IS---DC------LELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 325 ~~vvitt~~~~-~~---~~------~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
.+|++.|...+ .. +. ....+.++..+|+|||-.+-- =.|+-=+++||.+-.. .++|.
T Consensus 184 ~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~~--~~~Y~ 250 (970)
T PRK12899 184 CDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEKH--NPVYF 250 (970)
T ss_pred CCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCccc--cHHHH
Confidence 45777776666 21 11 112234678999999976511 1355568888876433 44444
Q ss_pred HHh
Q psy14708 395 LLN 397 (513)
Q Consensus 395 ll~ 397 (513)
.++
T Consensus 251 ~~~ 253 (970)
T PRK12899 251 ELK 253 (970)
T ss_pred HHh
Confidence 433
No 102
>PRK10536 hypothetical protein; Provisional
Probab=96.63 E-value=0.013 Score=56.24 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=37.7
Q ss_pred EEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCC
Q psy14708 327 VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNN 388 (513)
Q Consensus 327 vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~ 388 (513)
|.+.+...++.. .+.-+.||+||||++.. ......+..+....+++++|-|-|-+
T Consensus 162 Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 162 VEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred EEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 455555444433 12337999999999833 44556667778899999999886554
No 103
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.57 E-value=0.035 Score=60.41 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=35.2
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
.++--..|+|||+..+.-+..........+++|.+|. .+..|+.+++..+.
T Consensus 19 lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 19 GMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3455578899998876654433333345789999997 77778888776653
No 104
>KOG0330|consensus
Probab=96.51 E-value=0.023 Score=56.69 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=43.0
Q ss_pred cCCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcch--hHHHHHhhccccc-EEEEeCCCCCC
Q psy14708 323 YKFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRNC--KLLEGLRLLHLEH-RVLLSGTPLQN 387 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l~a~~-r~~LTGTP~~n 387 (513)
.+++|++.|.+.+...... +..-....+|+|||.++-+.+- ...+.+..++..+ .++.|+|-..+
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~k 248 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKK 248 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchh
Confidence 3567888999988876543 2222345699999999977543 4446666676554 56778876543
No 105
>KOG0338|consensus
Probab=96.50 E-value=0.0093 Score=61.30 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=44.3
Q ss_pred ccCCcEEEecHHHHHhchhhhcc---ccccEEEEccccccCCcch-hHHHHHhhcc--cccEEEEeCCCCCCCHHHHHH
Q psy14708 322 LYKFHVLITTFEIIISDCLELKD---FNWRLCIIDEAHRLKNRNC-KLLEGLRLLH--LEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~l~~---~~~~~vIvDEaH~~kn~~s-~~~~al~~l~--a~~r~~LTGTP~~n~~~dl~~ 394 (513)
...+||||.|.+.+......-.. -+.-.+|+|||.++-...- ...+-+..+. .+-.++.|+|.. ..+.||.+
T Consensus 300 Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMt-eeVkdL~s 377 (691)
T KOG0338|consen 300 RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMT-EEVKDLAS 377 (691)
T ss_pred hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhH-HHHHHHHH
Confidence 35678999999999886554333 3456899999999744321 1122233333 344588899863 33444444
No 106
>KOG0948|consensus
Probab=96.47 E-value=0.01 Score=63.69 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=46.7
Q ss_pred CCCCCCCccccC-----CCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhh
Q psy14708 10 KPPASDWVKLEK-----SPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQ 84 (513)
Q Consensus 10 ~~~~~~~~~~~~-----~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~ 84 (513)
.||..+|.-+.. +|.-.-..+|-|||..|+.=+- ++. ..+.......|||+.
T Consensus 104 vP~~~dY~p~~~~~~~~~pAk~YPF~LDpFQ~~aI~Cid----r~e-------------------SVLVSAHTSAGKTVV 160 (1041)
T KOG0948|consen 104 VPPNYDYTPLLPKIFGKPPAKTYPFTLDPFQSTAIKCID----RGE-------------------SVLVSAHTSAGKTVV 160 (1041)
T ss_pred cCCccccCccccccCCCCcccCCCcccCchHhhhhhhhc----CCc-------------------eEEEEeecCCCcchH
Confidence 456666765322 2222233688899999885442 111 144556678899999
Q ss_pred HHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHH
Q psy14708 85 SLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREF 117 (513)
Q Consensus 85 ~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~ 117 (513)
|=-.|+..++.. .+++.-.|- .+-.|=.+|+
T Consensus 161 AeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl 192 (1041)
T KOG0948|consen 161 AEYAIAMSLREK--QRVIYTSPIKALSNQKYREL 192 (1041)
T ss_pred HHHHHHHHHHhc--CeEEeeChhhhhcchhHHHH
Confidence 866666555542 455555553 3333444443
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.059 Score=53.05 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=42.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
.+|-|+|..+-.-++..+.+... -++-.-.|.|||=++...+....++| +++.|..|-
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~-------------------~lv~AV~GaGKTEMif~~i~~al~~G--~~vciASPR 153 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKED-------------------TLVWAVTGAGKTEMIFQGIEQALNQG--GRVCIASPR 153 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCc-------------------EEEEEecCCCchhhhHHHHHHHHhcC--CeEEEecCc
Confidence 68999999999888877765542 34555678999999888887777664 566666663
No 108
>KOG1803|consensus
Probab=96.36 E-value=0.038 Score=58.28 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=43.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+-|+.|+.+... .+. --++=-.+|+|||.+..-+|......+ +++||.+|.+
T Consensus 184 ~~ln~SQk~Av~~~~~----~k~------------------l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn 239 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN----NKD------------------LLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSN 239 (649)
T ss_pred ccccHHHHHHHHHHhc----cCC------------------ceEeeCCCCCCceeeHHHHHHHHHHcC--CeEEEEcCch
Confidence 5688899999998862 110 034555789999999999888777765 7888888875
Q ss_pred chh
Q psy14708 109 TIP 111 (513)
Q Consensus 109 ~~~ 111 (513)
+.-
T Consensus 240 ~AV 242 (649)
T KOG1803|consen 240 VAV 242 (649)
T ss_pred HHH
Confidence 543
No 109
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.36 E-value=0.021 Score=63.93 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=51.3
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh-cCCCCCeEEecCC-
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPL- 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~-~~~~~~~liv~P~- 107 (513)
..||.|++-..-+......+.+ +++-...|+|||+.+|........ .+...+++..+..
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~-------------------~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRTh 70 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDE-------------------AILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTH 70 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCc-------------------eEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccc
Confidence 4699999988877755554432 556667899999999887665544 3334466666666
Q ss_pred CchhhHHHHHHhh
Q psy14708 108 STIPNWQREFEAW 120 (513)
Q Consensus 108 ~~~~~W~~E~~~~ 120 (513)
+-+.|-.+|+++.
T Consensus 71 sQl~q~i~Elk~~ 83 (705)
T TIGR00604 71 SQLEQATEELRKL 83 (705)
T ss_pred hHHHHHHHHHHhh
Confidence 6677899999884
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.015 Score=60.37 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=64.2
Q ss_pred hHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-Cchhh
Q psy14708 34 YQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPN 112 (513)
Q Consensus 34 ~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~ 112 (513)
-|-.|+.-|.+...++.. -..|---.|.|||+++--+|... ..|+||++|+ .+..|
T Consensus 16 DQP~AI~~Lv~gi~~g~~------------------~QtLLGvTGSGKTfT~AnVI~~~-----~rPtLV~AhNKTLAaQ 72 (663)
T COG0556 16 DQPEAIAELVEGIENGLK------------------HQTLLGVTGSGKTFTMANVIAKV-----QRPTLVLAHNKTLAAQ 72 (663)
T ss_pred CcHHHHHHHHHHHhcCce------------------eeEEeeeccCCchhHHHHHHHHh-----CCCeEEEecchhHHHH
Confidence 588899888866665431 13344567999999998887655 5799999997 88899
Q ss_pred HHHHHHhhcCCcEEEEcceeeEEecccch
Q psy14708 113 WQREFEAWTDLNVIVYHATFVVLLQTGSK 141 (513)
Q Consensus 113 W~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
-..||+.|+|.+.+-+-..+.--+++..+
T Consensus 73 Ly~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 73 LYSEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHHHhCcCcceEEEeeeccccCcccc
Confidence 99999999997777666665555555554
No 111
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.20 E-value=0.042 Score=59.86 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=25.2
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
..|.|.-...|.|||+++...+...... ...++||+|+
T Consensus 116 l~G~Iae~~TGeGKTla~~lp~~~~al~--G~~v~VvTpt 153 (656)
T PRK12898 116 LSGRLAEMQTGEGKTLTATLPAGTAALA--GLPVHVITVN 153 (656)
T ss_pred hCCCeeeeeCCCCcHHHHHHHHHHHhhc--CCeEEEEcCc
Confidence 3455666788999999987655444333 3467777776
No 112
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.12 E-value=0.024 Score=63.90 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchh-hHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIP-NWQREF 117 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~-~W~~E~ 117 (513)
.|+.-+.|.|||.+..-.+.... ....+++|+.|..+.. |-...+
T Consensus 20 vIi~a~TGSGKTT~vpl~lL~~~--~~~~~ilvlqPrR~aA~qiA~rv 65 (819)
T TIGR01970 20 VVLEAPPGAGKSTAVPLALLDAP--GIGGKIIMLEPRRLAARSAAQRL 65 (819)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh--ccCCeEEEEeCcHHHHHHHHHHH
Confidence 56778888899998876554433 2346899999974443 444444
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.025 Score=62.96 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=33.9
Q ss_pred ccCCcEEEecHHHHHhchhhhccccccEEEEcccccc
Q psy14708 322 LYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRL 358 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~ 358 (513)
..+|||++||-.-+.+....|..++||+|++|-+.-+
T Consensus 179 ~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 179 SGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred cCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 4579999999999999999999999999999998875
No 114
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.02 E-value=0.042 Score=61.46 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=33.9
Q ss_pred CcEEEecHHHHH----hchh-----hhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHH
Q psy14708 325 FHVLITTFEIII----SDCL-----ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 325 ~~vvitt~~~~~----~~~~-----~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
.||++.|...+. ++.- ...+-.+..+|+||++.+--. .|+.=+++||.+-.. .++|..
T Consensus 172 ~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~~~~--~~~y~~ 238 (896)
T PRK13104 172 ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAAEDS--SELYIK 238 (896)
T ss_pred CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCCccc--hHHHHH
Confidence 467777777651 1211 112346889999999986222 245557888865322 445544
Q ss_pred H
Q psy14708 396 L 396 (513)
Q Consensus 396 l 396 (513)
+
T Consensus 239 ~ 239 (896)
T PRK13104 239 I 239 (896)
T ss_pred H
Confidence 3
No 115
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.00 E-value=0.03 Score=62.72 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=52.7
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC--CCCCeEEecC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAP 106 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~--~~~~~liv~P 106 (513)
...+++|..++......+..+. -.+|....|.|||..+++........+ ...+++.+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP 254 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSL-------------------LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLP 254 (733)
T ss_pred chhhHHHHHHHHHHHhcccccc-------------------cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEcc
Confidence 3468889999887764333221 278999999999999998877766663 5566677777
Q ss_pred C-CchhhHHHHHHhhcC
Q psy14708 107 L-STIPNWQREFEAWTD 122 (513)
Q Consensus 107 ~-~~~~~W~~E~~~~~~ 122 (513)
- +++.+-.+.++.+.+
T Consensus 255 ~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 255 FRTIIEDMYRRAKEIFG 271 (733)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 4 666667777766654
No 116
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.00 E-value=0.04 Score=62.20 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=36.1
Q ss_pred cEEEecHHHHHhchh-hhccccccEEEEcccccc-CCcchhHH---HHHhhcc-cccEEEEeCCCCCCCHHH
Q psy14708 326 HVLITTFEIIISDCL-ELKDFNWRLCIIDEAHRL-KNRNCKLL---EGLRLLH-LEHRVLLSGTPLQNNVNE 391 (513)
Q Consensus 326 ~vvitt~~~~~~~~~-~l~~~~~~~vIvDEaH~~-kn~~s~~~---~al~~l~-a~~r~~LTGTP~~n~~~d 391 (513)
.+++.|.+.+.+... ...--+++.||+||+|.- -+.+-... ..+..++ ....++||||.-...+.+
T Consensus 95 ~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~ 166 (812)
T PRK11664 95 RLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQ 166 (812)
T ss_pred cEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHH
Confidence 366666666655322 112236789999999972 22221111 1122233 335799999986544443
No 117
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.11 Score=55.87 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=47.7
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhccc-ccEEEEeCCCCCCCHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLHL-EHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~a-~~r~~LTGTP~~n~~~dl~~ 394 (513)
..++++.|...+..... .+...+...+|+|||-++-+.+ ......+..+.. ...++.|+|... .+.++..
T Consensus 150 ~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~~ 224 (513)
T COG0513 150 GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELAR 224 (513)
T ss_pred CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHHH
Confidence 36799999998886433 3455567789999999986653 233344555543 567899999876 4555443
No 118
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=95.84 E-value=0.086 Score=55.31 Aligned_cols=75 Identities=25% Similarity=0.212 Sum_probs=48.7
Q ss_pred cccCCcEEEecHHHHHhchhh-hccccccEEEEccccccCCcc-h-hH---HHHHhhc-ccccEEEEeCCCCCCCHHHHH
Q psy14708 321 DLYKFHVLITTFEIIISDCLE-LKDFNWRLCIIDEAHRLKNRN-C-KL---LEGLRLL-HLEHRVLLSGTPLQNNVNELF 393 (513)
Q Consensus 321 ~~~~~~vvitt~~~~~~~~~~-l~~~~~~~vIvDEaH~~kn~~-s-~~---~~al~~l-~a~~r~~LTGTP~~n~~~dl~ 393 (513)
...+.||++-||+-+...... -.--+...|||||.|.+.... . .. ..-++.+ ...-.+.||+|= +++.++.
T Consensus 312 t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA 389 (830)
T COG1202 312 TSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELA 389 (830)
T ss_pred CCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHH
Confidence 456788999999977664433 122356799999999997622 1 11 2223333 335578899995 6777777
Q ss_pred HHHh
Q psy14708 394 SLLN 397 (513)
Q Consensus 394 ~ll~ 397 (513)
..+.
T Consensus 390 ~~l~ 393 (830)
T COG1202 390 KKLG 393 (830)
T ss_pred HHhC
Confidence 6654
No 119
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.05 Score=58.24 Aligned_cols=79 Identities=20% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCcEEEecHHHHHhc--hhhhccccccEEEEccccccCCcc-------hhHHHHHhhcccccEEEEeCCCCCCCHHHHHH
Q psy14708 324 KFHVLITTFEIIISD--CLELKDFNWRLCIIDEAHRLKNRN-------CKLLEGLRLLHLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 324 ~~~vvitt~~~~~~~--~~~l~~~~~~~vIvDEaH~~kn~~-------s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
..+++..+.+.+.+. ...+......+++|||||-+-..+ .........+...-+++||||--..--.|+..
T Consensus 107 ~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~ 186 (590)
T COG0514 107 QLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIRE 186 (590)
T ss_pred ceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHH
Confidence 456777888877775 334668889999999999984432 22233333345557999999988888888888
Q ss_pred HHhhhCCC
Q psy14708 395 LLNFLEPQ 402 (513)
Q Consensus 395 ll~~L~~~ 402 (513)
.|..-.+.
T Consensus 187 ~L~l~~~~ 194 (590)
T COG0514 187 QLGLQDAN 194 (590)
T ss_pred HhcCCCcc
Confidence 88776654
No 120
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.74 E-value=0.017 Score=63.00 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=33.7
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchh
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIP 111 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~ 111 (513)
+-.|.|+|||.+=+-++..+++.....+.+||||...+.
T Consensus 79 I~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIk 117 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIK 117 (985)
T ss_pred EEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHH
Confidence 446899999999999999999999999999999975444
No 121
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.60 E-value=0.036 Score=56.59 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=28.4
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhH
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNW 113 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W 113 (513)
++--..|+|||+.++.++..+.........+++|+++.+...
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~ 46 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNK 46 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHH
Confidence 344567999999999998777444445566666666544443
No 122
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.51 E-value=0.061 Score=49.99 Aligned_cols=39 Identities=31% Similarity=0.404 Sum_probs=23.3
Q ss_pred cccEEEEccccccCCcchhHHHHHhhccc-ccEEEEeCCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLHL-EHRVLLSGTPLQ 386 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~a-~~r~~LTGTP~~ 386 (513)
..++|||||+..+.. ......+..+.. ..++++.|-|-|
T Consensus 93 ~~~vliVDEasmv~~--~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDS--RQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BH--HHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCH--HHHHHHHHHHHhcCCEEEEECCcch
Confidence 356999999999822 233333444433 679999998864
No 123
>KOG0353|consensus
Probab=95.50 E-value=0.12 Score=51.26 Aligned_cols=75 Identities=20% Similarity=0.116 Sum_probs=52.0
Q ss_pred cCCcEEEecHHHHHhchh-------hhccccccEEEEccccccC-------CcchhHHHHHhhcccccEEEEeCCCCCCC
Q psy14708 323 YKFHVLITTFEIIISDCL-------ELKDFNWRLCIIDEAHRLK-------NRNCKLLEGLRLLHLEHRVLLSGTPLQNN 388 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~-------~l~~~~~~~vIvDEaH~~k-------n~~s~~~~al~~l~a~~r~~LTGTP~~n~ 388 (513)
..+..+.+|.+.+.+... .+....|.++.+||.|... ..-+.....-++++....+.||+|...+-
T Consensus 185 se~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~v 264 (695)
T KOG0353|consen 185 SEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHV 264 (695)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcch
Confidence 455677777777766433 3555668899999998763 23333333345557778899999999998
Q ss_pred HHHHHHHHh
Q psy14708 389 VNELFSLLN 397 (513)
Q Consensus 389 ~~dl~~ll~ 397 (513)
++|...++.
T Consensus 265 l~d~k~il~ 273 (695)
T KOG0353|consen 265 LDDAKDILC 273 (695)
T ss_pred hhHHHHHHh
Confidence 888777664
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=95.40 E-value=0.082 Score=59.11 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred ccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCC
Q psy14708 343 KDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPL 385 (513)
Q Consensus 343 ~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~ 385 (513)
.+.+++++||||+|.+--. .++.-+++||.+-
T Consensus 199 vqr~l~~aIVDEvDsiLID-----------EArtPLIISg~~~ 230 (913)
T PRK13103 199 FQRELNFAVIDEVDSILID-----------EARTPLIISGQAE 230 (913)
T ss_pred cccccceeEechhhheecc-----------ccCCceeecCCCc
Confidence 3457889999999987222 2444578888643
No 125
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.20 E-value=0.073 Score=62.12 Aligned_cols=65 Identities=23% Similarity=0.135 Sum_probs=38.8
Q ss_pred CcEEEecHHHHHhchhh-hccccccEEEEccccc-cCCcchhHHHHHhhc----ccccEEEEeCCCCCCCHH
Q psy14708 325 FHVLITTFEIIISDCLE-LKDFNWRLCIIDEAHR-LKNRNCKLLEGLRLL----HLEHRVLLSGTPLQNNVN 390 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~-l~~~~~~~vIvDEaH~-~kn~~s~~~~al~~l----~a~~r~~LTGTP~~n~~~ 390 (513)
..|++.|.+.+...... ..--+++.||+||||. .-+.+-... .+..+ .....+++|||.-...+.
T Consensus 164 t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSATid~e~fs 234 (1294)
T PRK11131 164 TMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSATIDPERFS 234 (1294)
T ss_pred CCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCCCCHHHHH
Confidence 45777787777664321 1133578999999994 545443322 23333 234679999998543333
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.08 E-value=0.24 Score=56.24 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.2
Q ss_pred cCCcEEEecHHHHHhchhhhc-cccccEEEEccccccC
Q psy14708 323 YKFHVLITTFEIIISDCLELK-DFNWRLCIIDEAHRLK 359 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l~-~~~~~~vIvDEaH~~k 359 (513)
...|++||++.-+..+...-. --.++.|||||||++-
T Consensus 412 ~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 412 KTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLM 449 (820)
T ss_pred HhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhH
Confidence 456799999998877542211 1247899999999994
No 127
>KOG1802|consensus
Probab=94.95 E-value=0.074 Score=56.62 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=45.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
++|-.-|..||...+.+- -.+|--..|+|||.++-+.+..+-+. ..+++||++|++
T Consensus 409 pkLN~SQ~~AV~~VL~rp-----------------------lsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSN 464 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQRP-----------------------LSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSN 464 (935)
T ss_pred hhhchHHHHHHHHHHcCC-----------------------ceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccc
Confidence 578889999998887211 15677789999999987776555444 567777777764
Q ss_pred -chhhHHHHHH
Q psy14708 109 -TIPNWQREFE 118 (513)
Q Consensus 109 -~~~~W~~E~~ 118 (513)
.+.|-.+.+.
T Consensus 465 iAVDqLaeKIh 475 (935)
T KOG1802|consen 465 IAVDQLAEKIH 475 (935)
T ss_pred hhHHHHHHHHH
Confidence 3445554443
No 128
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.89 E-value=0.03 Score=47.95 Aligned_cols=36 Identities=44% Similarity=0.516 Sum_probs=26.9
Q ss_pred cEEEEccccccCCcchhHHHHHhhc--ccccEEEEeCCCC
Q psy14708 348 RLCIIDEAHRLKNRNCKLLEGLRLL--HLEHRVLLSGTPL 385 (513)
Q Consensus 348 ~~vIvDEaH~~kn~~s~~~~al~~l--~a~~r~~LTGTP~ 385 (513)
..||+||+|++. +......++.+ .....++++|||-
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESST
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 689999999994 24455555555 5667899999993
No 129
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.12 Score=56.95 Aligned_cols=82 Identities=26% Similarity=0.304 Sum_probs=57.7
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
..|-+-|..++.-+.... .+ ..-.+|.--.|.|||=.=+-+|......| +.+||++|.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-~~------------------~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI 255 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-GG------------------FAPFLLDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEI 255 (730)
T ss_pred cccCHHHHHHHHHHHHhc-cc------------------ccceeEeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccc
Confidence 568889999998886432 11 11156777789999988888888888776 677888885
Q ss_pred CchhhHHHHHHhhcCCcEEEEcce
Q psy14708 108 STIPNWQREFEAWTDLNVIVYHAT 131 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~~~~~~~~~~ 131 (513)
.+..|-...|+..++..+.++|..
T Consensus 256 ~Ltpq~~~rf~~rFg~~v~vlHS~ 279 (730)
T COG1198 256 ALTPQLLARFKARFGAKVAVLHSG 279 (730)
T ss_pred cchHHHHHHHHHHhCCChhhhccc
Confidence 777777777776666555555553
No 130
>PRK04296 thymidine kinase; Provisional
Probab=94.72 E-value=0.15 Score=47.05 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=19.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~ 95 (513)
.++.-+||.|||..++.++......
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc
Confidence 4567789999999999887655443
No 131
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.68 E-value=0.23 Score=54.69 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=46.3
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+.|+.+|.+.+. .. .-.++--..|+|||.++.+++......+. ++|+.+|.+
T Consensus 156 ~~ln~~Q~~Av~~~l~----~~------------------~~~lI~GpPGTGKT~t~~~ii~~~~~~g~--~VLv~a~sn 211 (637)
T TIGR00376 156 PNLNESQKEAVSFALS----SK------------------DLFLIHGPPGTGKTRTLVELIRQLVKRGL--RVLVTAPSN 211 (637)
T ss_pred CCCCHHHHHHHHHHhc----CC------------------CeEEEEcCCCCCHHHHHHHHHHHHHHcCC--CEEEEcCcH
Confidence 5688899999987651 10 11456667899999999998877766543 889999875
Q ss_pred c-hhhHHHHHH
Q psy14708 109 T-IPNWQREFE 118 (513)
Q Consensus 109 ~-~~~W~~E~~ 118 (513)
. +.+..+.+.
T Consensus 212 ~Avd~l~e~l~ 222 (637)
T TIGR00376 212 IAVDNLLERLA 222 (637)
T ss_pred HHHHHHHHHHH
Confidence 4 444555443
No 132
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=94.68 E-value=0.19 Score=56.23 Aligned_cols=38 Identities=21% Similarity=0.060 Sum_probs=22.5
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
-.|.|.-...|-|||+++...+......+ +.+-|++|+
T Consensus 94 ~~G~Iaem~TGeGKTLva~lpa~l~aL~G--~~V~IvTpn 131 (830)
T PRK12904 94 HEGKIAEMKTGEGKTLVATLPAYLNALTG--KGVHVVTVN 131 (830)
T ss_pred cCCchhhhhcCCCcHHHHHHHHHHHHHcC--CCEEEEecC
Confidence 34566666789999998754443222232 235566665
No 133
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.66 E-value=0.074 Score=50.13 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=75.8
Q ss_pred CCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 27 NDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 27 ~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
.+..+||-|.+-+..|... ..+.+ .++=--||-|||.+++-+++.....+. .=+.+++|
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n-------------------~v~QlnMGeGKTsVI~Pmla~~LAdg~-~LvrviVp 78 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKN-------------------SVMQLNMGEGKTSVIVPMLALALADGS-RLVRVIVP 78 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCC-------------------eEeeecccCCccchHHHHHHHHHcCCC-cEEEEEcC
Confidence 4468999999999888732 12222 344445777999999988877776543 45678999
Q ss_pred CCchhhHHHHHHhhcC--CcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccc
Q psy14708 107 LSTIPNWQREFEAWTD--LNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPN 174 (513)
Q Consensus 107 ~~~~~~W~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~q 174 (513)
+.++.|=..-+..-++ .+..+++-.+.-....+...... ...........++.|++.|.++++-
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~----~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEK----IRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHH----HHHHHHHHHHcCCEEEeChHHHHHH
Confidence 9999998887776664 33444444433333333221111 1111112234688999999877653
No 134
>KOG1001|consensus
Probab=94.58 E-value=0.022 Score=62.42 Aligned_cols=66 Identities=35% Similarity=0.585 Sum_probs=54.1
Q ss_pred hhhhhcccccccCCCCchhhHHHHHHhhhhcC-------CCCCeEEecCCCchhhHHHHHHhhcC---CcEEEEcc
Q psy14708 65 QSLTRNCILADEMGLGKTIQSLTFVDAVFKTG-------IRGPFLVIAPLSTIPNWQREFEAWTD---LNVIVYHA 130 (513)
Q Consensus 65 ~~~~~GgiLademGlGKT~~~iali~~~~~~~-------~~~~~liv~P~~~~~~W~~E~~~~~~---~~~~~~~~ 130 (513)
+...+|||+||+||+|||+++|+++....... ..+.+|||||.+++.||..|+.+-.. ..+.++|+
T Consensus 149 ~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g 224 (674)
T KOG1001|consen 149 QQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG 224 (674)
T ss_pred cCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCccceEEEEecc
Confidence 45688999999999999999999988775543 46778999999999999999966553 45666666
No 135
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=94.46 E-value=0.31 Score=53.39 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=21.9
Q ss_pred cccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
|-|.-...|-|||+++...+...-.. .+.+-||+|+
T Consensus 93 G~VaEM~TGEGKTLvA~l~a~l~AL~--G~~VhvvT~N 128 (764)
T PRK12326 93 GDVIEMATGEGKTLAGAIAAAGYALQ--GRRVHVITVN 128 (764)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHc--CCCeEEEcCC
Confidence 44455556999999987655444333 3445555555
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.35 E-value=0.77 Score=53.07 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=28.0
Q ss_pred ccCCcEEEecHHHHHhchhhhcc--ccccEEEEccccccC
Q psy14708 322 LYKFHVLITTFEIIISDCLELKD--FNWRLCIIDEAHRLK 359 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~l~~--~~~~~vIvDEaH~~k 359 (513)
....+|+||++..+..+...-.. -.++.+||||||++-
T Consensus 429 a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 429 AKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred HhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 35678999999988887532111 136899999999994
No 137
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=94.26 E-value=0.29 Score=47.53 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.0
Q ss_pred cccccEEEEcccccc
Q psy14708 344 DFNWRLCIIDEAHRL 358 (513)
Q Consensus 344 ~~~~~~vIvDEaH~~ 358 (513)
..+++.+||||+..+
T Consensus 195 ~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 195 QRGFDFAIVDEVDSI 209 (266)
T ss_dssp SSSSSEEEECTHHHH
T ss_pred cCCCCEEEEeccceE
Confidence 457889999998765
No 138
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.25 E-value=0.27 Score=55.10 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=25.9
Q ss_pred ccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHh
Q psy14708 343 KDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLN 397 (513)
Q Consensus 343 ~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~ 397 (513)
.+..++.+||||+..+-.. .++.-+++||.+- .. .++|..+.
T Consensus 199 vqr~~~~aIvDEvDsiLiD-----------EArtPLIISg~~~-~~-~~~y~~~~ 240 (908)
T PRK13107 199 VQRPLHYALIDEVDSILID-----------EARTPLIISGAAE-DS-SELYIKIN 240 (908)
T ss_pred hccccceeeecchhhhccc-----------cCCCceeecCCCc-cc-hHHHHHHH
Confidence 3456889999999766322 2455678888543 32 45555443
No 139
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.05 E-value=0.28 Score=53.43 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
.++.|||||+..+- .....+.+..++...|++|.|=|-|
T Consensus 259 ~~dvlIiDEaSMvd--~~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 259 PLDVLVVDEASMVD--LPLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred cccEEEEcccccCC--HHHHHHHHHhcCCCCEEEEECChhh
Confidence 57999999999983 3345556677788889999997643
No 140
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=94.03 E-value=0.056 Score=53.49 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=38.1
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHhhhhhc----CCCCC---------ChhHHHHHHHHHHHhcCCCCCcCCC
Q psy14708 450 EETVVEVELTNIQKKYYRGILERNFSFLSK----GTTSA---------NVPNLMNTMMELRKCCIHPYLLNGK 509 (513)
Q Consensus 450 ~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~----~~~~~---------~~~~~l~~l~~LRq~c~HP~L~~~~ 509 (513)
.++.++++|++.|++.|+.++..+...+.+ ..... ....+-..+-+|+.+|+||+|+.++
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH 76 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDH 76 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--T
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccc
Confidence 478899999999999999999876544322 11111 1244566788999999999998765
No 141
>KOG0328|consensus
Probab=93.98 E-value=0.43 Score=45.89 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=50.2
Q ss_pred cEEEecHHHHHhch--hhhccccccEEEEccccccCC--cchhHHHHHhhcc-cccEEEEeCCCCCCCHHHHHHHHhhhC
Q psy14708 326 HVLITTFEIIISDC--LELKDFNWRLCIIDEAHRLKN--RNCKLLEGLRLLH-LEHRVLLSGTPLQNNVNELFSLLNFLE 400 (513)
Q Consensus 326 ~vvitt~~~~~~~~--~~l~~~~~~~vIvDEaH~~kn--~~s~~~~al~~l~-a~~r~~LTGTP~~n~~~dl~~ll~~L~ 400 (513)
++|.-|..++..-. ..|.--...++|+|||..+-| -+.+.+...+.|. +.-.+++|+|-. .|+..+.++.-
T Consensus 147 hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp----~eilemt~kfm 222 (400)
T KOG0328|consen 147 HVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP----HEILEMTEKFM 222 (400)
T ss_pred eEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc----HHHHHHHHHhc
Confidence 45555555554422 234555678999999999844 4556677777775 667899999974 67777777666
Q ss_pred CCC
Q psy14708 401 PQQ 403 (513)
Q Consensus 401 ~~~ 403 (513)
+++
T Consensus 223 tdp 225 (400)
T KOG0328|consen 223 TDP 225 (400)
T ss_pred CCc
Confidence 654
No 142
>KOG0951|consensus
Probab=93.98 E-value=0.097 Score=59.54 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=37.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCC---------CCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGI---------RGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~---------~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
-++|-..|.|||-.|+-.+......+. ..++..++|. .++..|.+.|.+++
T Consensus 328 mLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl 388 (1674)
T KOG0951|consen 328 MLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL 388 (1674)
T ss_pred EEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc
Confidence 467888999999999876655544332 3366788884 88888888877665
No 143
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.87 E-value=0.29 Score=54.77 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=40.7
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+.|++++..+.. ++ -.+|--..|+|||.++-+++......+...++++++|..
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~-------------------~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg 378 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HK-------------------VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTG 378 (720)
T ss_pred CCCCHHHHHHHHHHHh----CC-------------------eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCch
Confidence 5688999999976641 11 166777889999998877766555544334566666655
Q ss_pred chhh
Q psy14708 109 TIPN 112 (513)
Q Consensus 109 ~~~~ 112 (513)
-...
T Consensus 379 ~AA~ 382 (720)
T TIGR01448 379 RAAK 382 (720)
T ss_pred HHHH
Confidence 4444
No 144
>KOG0385|consensus
Probab=93.69 E-value=0.078 Score=57.36 Aligned_cols=60 Identities=57% Similarity=0.923 Sum_probs=49.7
Q ss_pred ccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC-CcEEEEcce
Q psy14708 54 LADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHAT 131 (513)
Q Consensus 54 l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~-~~~~~~~~~ 131 (513)
||||||+|||+|.++.-|.|.+--| . .+|.||+||.+++.+|..||.+|.| ..+..++|.
T Consensus 191 LaDEMGLGKTlQtIs~l~yl~~~~~----------------~--~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd 251 (971)
T KOG0385|consen 191 LADEMGLGKTLQTISLLGYLKGRKG----------------I--PGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD 251 (971)
T ss_pred eehhcccchHHHHHHHHHHHHHhcC----------------C--CCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC
Confidence 6999999999998765555554333 2 4799999999999999999999997 788888885
No 145
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.60 E-value=0.26 Score=57.78 Aligned_cols=67 Identities=22% Similarity=0.116 Sum_probs=36.3
Q ss_pred EEEecHHHHHhchhh-hccccccEEEEccccc-cCCcchhHH--HHHh-hcccccEEEEeCCCCCCCHHHHH
Q psy14708 327 VLITTFEIIISDCLE-LKDFNWRLCIIDEAHR-LKNRNCKLL--EGLR-LLHLEHRVLLSGTPLQNNVNELF 393 (513)
Q Consensus 327 vvitt~~~~~~~~~~-l~~~~~~~vIvDEaH~-~kn~~s~~~--~al~-~l~a~~r~~LTGTP~~n~~~dl~ 393 (513)
|++.|.+.+...... -.--+++.||+||+|. .-+.+-... +.+. ....-+.++||+|.-...+.+.+
T Consensus 159 I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~fa~~F 230 (1283)
T TIGR01967 159 VKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHF 230 (1283)
T ss_pred eeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHHHHHh
Confidence 555566655543221 1123578999999994 545443322 1111 11234679999998544444443
No 146
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.35 E-value=0.19 Score=50.16 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=27.1
Q ss_pred cEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCC
Q psy14708 348 RLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 348 ~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
..||+||||++-. ...-..+...-...+++|||-|.|
T Consensus 353 ~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHH
Confidence 5899999999932 233444556667789999998864
No 147
>KOG1131|consensus
Probab=93.08 E-value=0.17 Score=52.51 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=37.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCC-CCCeEEecCC--CchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGI-RGPFLVIAPL--STIPNWQREFEAW 120 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~-~~~~liv~P~--~~~~~W~~E~~~~ 120 (513)
|+|-..-|+|||+.-++++.....+.+ ..+-||-|-- +-++.--.|++..
T Consensus 38 ~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 38 CLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 566677788999999999988888877 6677888874 4445555565443
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.08 E-value=0.19 Score=55.43 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhcC-CcEEEEcc
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTD-LNVIVYHA 130 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~~-~~~~~~~~ 130 (513)
.|.|||-.-+.++......| +.+||++|. .+..|+...+++.++ ..+.++|+
T Consensus 169 ~GSGKTevyl~~i~~~l~~G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS 222 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSA 222 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECC
Confidence 49999999999988887764 458888886 777788877777765 44555555
No 149
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.06 E-value=0.38 Score=52.57 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=30.8
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
.+++|||||+..+ .-......+..++...|++|-|=|-|
T Consensus 265 ~~dvlIvDEaSMv--d~~lm~~ll~al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 265 HLDVLVVDEASMV--DLPMMARLIDALPPHARVIFLGDRDQ 303 (615)
T ss_pred CCCeEEEChHhcc--cHHHHHHHHHhcccCCEEEEecchhh
Confidence 5689999999998 34455666777888899999997754
No 150
>KOG0343|consensus
Probab=92.97 E-value=0.41 Score=50.16 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=47.3
Q ss_pred cCCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCCCCCHHHHHH
Q psy14708 323 YKFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~~n~~~dl~~ 394 (513)
...+|+++|.+.+.+.... |..-+..++|+|||.++-..+ ......+..|. .+-.++.|+|+. +++.||..
T Consensus 189 ~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaR 265 (758)
T KOG0343|consen 189 SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLAR 265 (758)
T ss_pred hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHH
Confidence 4567999999999886543 555567899999999984432 22233344553 455788999986 34555544
No 151
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=92.72 E-value=0.63 Score=51.90 Aligned_cols=37 Identities=24% Similarity=0.117 Sum_probs=22.3
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
.|.|.-...|-|||+++...+...-..| ..+-|++|+
T Consensus 94 ~G~iaEm~TGEGKTLvA~l~a~l~al~G--~~v~vvT~n 130 (796)
T PRK12906 94 EGNIAEMKTGEGKTLTATLPVYLNALTG--KGVHVVTVN 130 (796)
T ss_pred cCCcccccCCCCCcHHHHHHHHHHHHcC--CCeEEEecc
Confidence 3455556789999999765544443332 445555555
No 152
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.54 E-value=0.59 Score=51.61 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=53.7
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-C
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-S 108 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~ 108 (513)
+....|-.++.-+.+...++.+. .+|.--.|.|||+++..++... ..|+|||+|+ .
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~------------------~~l~Gvtgs~kt~~~a~~~~~~-----~~p~Lvi~~n~~ 65 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKH------------------QTLLGVTGSGKTFTMANVIAQV-----NRPTLVIAHNKT 65 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCc------------------EEEECCCCcHHHHHHHHHHHHh-----CCCEEEEECCHH
Confidence 34457888888887655433211 1244446889999988776542 4689999997 7
Q ss_pred chhhHHHHHHhhcCCc-EEEE
Q psy14708 109 TIPNWQREFEAWTDLN-VIVY 128 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~-~~~~ 128 (513)
...||..|++.|++.+ |..+
T Consensus 66 ~A~ql~~el~~f~p~~~V~~f 86 (655)
T TIGR00631 66 LAAQLYNEFKEFFPENAVEYF 86 (655)
T ss_pred HHHHHHHHHHHhCCCCeEEEE
Confidence 7789999999999866 4444
No 153
>KOG0345|consensus
Probab=92.32 E-value=1 Score=46.49 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=25.6
Q ss_pred CCcEEEecHHHHHhchhh----hccccccEEEEccccccCC
Q psy14708 324 KFHVLITTFEIIISDCLE----LKDFNWRLCIIDEAHRLKN 360 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~----l~~~~~~~vIvDEaH~~kn 360 (513)
..+|++.|.+.+...... +..-.-..+|+|||.++-.
T Consensus 131 ~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 131 GPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred CCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 345788888877765433 3333467899999999854
No 154
>KOG0342|consensus
Probab=92.10 E-value=0.98 Score=46.77 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=40.4
Q ss_pred CCcEEEecHHHHHhchhhhccc---cccEEEEccccccCCcc--hhHHHHHhhc-ccccEEEEeCCCCCCCHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCLELKDF---NWRLCIIDEAHRLKNRN--CKLLEGLRLL-HLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~---~~~~vIvDEaH~~kn~~--s~~~~al~~l-~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
..++++.|.+.+......-..+ .-..+|+|||.++-.-+ -..-+.+..+ +.+...+.|+|-. ..+.++..
T Consensus 205 ~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~-~kV~~l~~ 280 (543)
T KOG0342|consen 205 GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQP-SKVKDLAR 280 (543)
T ss_pred cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCc-HHHHHHHH
Confidence 3457788887777654321111 22679999999984422 2223333344 4456788999853 34555544
No 155
>KOG4284|consensus
Probab=92.01 E-value=0.43 Score=50.95 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=43.9
Q ss_pred cEEEecHHHHHhch--hhhccccccEEEEccccccCCcchh---HHHHHhhc-ccccEEEEeCCCCCC
Q psy14708 326 HVLITTFEIIISDC--LELKDFNWRLCIIDEAHRLKNRNCK---LLEGLRLL-HLEHRVLLSGTPLQN 387 (513)
Q Consensus 326 ~vvitt~~~~~~~~--~~l~~~~~~~vIvDEaH~~kn~~s~---~~~al~~l-~a~~r~~LTGTP~~n 387 (513)
.|+|-|.+.+.+.. ..+..-+.++.|+|||..+-...+. ....+..| +.+-.++.|+|=.+|
T Consensus 145 rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n 212 (980)
T KOG4284|consen 145 RIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN 212 (980)
T ss_pred eEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh
Confidence 48888888887754 3466667889999999998665443 33445555 455678999996655
No 156
>KOG0347|consensus
Probab=91.86 E-value=0.58 Score=49.07 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=37.3
Q ss_pred CCcEEEecHHHHHhc----hhhhccc-cccEEEEccccccCC--cchhHHHHHhhcc------cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISD----CLELKDF-NWRLCIIDEAHRLKN--RNCKLLEGLRLLH------LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~----~~~l~~~-~~~~vIvDEaH~~kn--~~s~~~~al~~l~------a~~r~~LTGTP~ 385 (513)
.++||+.|.+.+-.- ...+..+ ....+|+||+.++-- .=.-..+.+..|. -+-.++.|||--
T Consensus 313 ~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt 387 (731)
T KOG0347|consen 313 RPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT 387 (731)
T ss_pred CCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEee
Confidence 457899888776543 2223332 256899999999833 2233444444442 233688899864
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=91.80 E-value=22 Score=41.19 Aligned_cols=74 Identities=24% Similarity=0.184 Sum_probs=45.3
Q ss_pred ccccCCcEEEecHHHHHhchhh---------hccccccEEEEccccccCCcchhHHHHHhh---cccccEEEEeCCCCCC
Q psy14708 320 KDLYKFHVLITTFEIIISDCLE---------LKDFNWRLCIIDEAHRLKNRNCKLLEGLRL---LHLEHRVLLSGTPLQN 387 (513)
Q Consensus 320 ~~~~~~~vvitt~~~~~~~~~~---------l~~~~~~~vIvDEaH~~kn~~s~~~~al~~---l~a~~r~~LTGTP~~n 387 (513)
......++++.|.+.+...... +...-=..||+||.|-+-.........+.. .-....++||||-...
T Consensus 558 ~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 558 KTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPA 637 (1110)
T ss_pred hhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 3456678889888877664422 223334689999999984333222222211 1457789999998766
Q ss_pred CHHHHH
Q psy14708 388 NVNELF 393 (513)
Q Consensus 388 ~~~dl~ 393 (513)
-...|+
T Consensus 638 l~~~L~ 643 (1110)
T TIGR02562 638 LVKTLF 643 (1110)
T ss_pred HHHHHH
Confidence 544444
No 158
>KOG0335|consensus
Probab=91.74 E-value=0.63 Score=48.48 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=36.5
Q ss_pred cCCcEEEecHHHHHhchh----hhccccccEEEEccccccCCc---chhHHHHHhhc-----ccccEEEEeCCCC
Q psy14708 323 YKFHVLITTFEIIISDCL----ELKDFNWRLCIIDEAHRLKNR---NCKLLEGLRLL-----HLEHRVLLSGTPL 385 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~----~l~~~~~~~vIvDEaH~~kn~---~s~~~~al~~l-----~a~~r~~LTGTP~ 385 (513)
...|+++.|...+..... .|..+. .+|+|||.++-.. .-...+.+... .....++.|+|-.
T Consensus 201 ~gcdIlvaTpGrL~d~~e~g~i~l~~~k--~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp 273 (482)
T KOG0335|consen 201 RGCDILVATPGRLKDLIERGKISLDNCK--FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP 273 (482)
T ss_pred cCccEEEecCchhhhhhhcceeehhhCc--EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC
Confidence 456788888888877433 244444 8999999987441 11222222222 2344678888853
No 159
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.37 E-value=0.51 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.0
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
.-+|.-..|+|||..|-++....
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 45788899999999987775443
No 160
>KOG0991|consensus
Probab=91.15 E-value=0.4 Score=45.02 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=26.2
Q ss_pred EEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhh
Q psy14708 327 VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRL 371 (513)
Q Consensus 327 vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~ 371 (513)
+|-.....+.+....+...++..||+|||..+ ++...+|++.
T Consensus 94 vVRn~IK~FAQ~kv~lp~grhKIiILDEADSM---T~gAQQAlRR 135 (333)
T KOG0991|consen 94 VVRNKIKMFAQKKVTLPPGRHKIIILDEADSM---TAGAQQALRR 135 (333)
T ss_pred HHHHHHHHHHHhhccCCCCceeEEEeeccchh---hhHHHHHHHH
Confidence 33334444455555567778899999999887 3334444443
No 161
>KOG0339|consensus
Probab=90.84 E-value=1.4 Score=45.93 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=38.0
Q ss_pred cCCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhccc-ccEEEEeCCC
Q psy14708 323 YKFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLHL-EHRVLLSGTP 384 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~a-~~r~~LTGTP 384 (513)
....+|+.|.+.+..... .....+-.++|+||+.++-..+ .+.......++. +-.++.|+|-
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf 411 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF 411 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc
Confidence 345699999998887543 2333455689999999984432 222222333343 3467778875
No 162
>KOG0348|consensus
Probab=90.84 E-value=0.95 Score=47.41 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=25.6
Q ss_pred CCcEEEecHHHHHhchhhhccc---cccEEEEccccccC
Q psy14708 324 KFHVLITTFEIIISDCLELKDF---NWRLCIIDEAHRLK 359 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~---~~~~vIvDEaH~~k 359 (513)
+.+|+|.|.+.+......-..+ +...||+||+.++-
T Consensus 262 GiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrll 300 (708)
T KOG0348|consen 262 GINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLL 300 (708)
T ss_pred CceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHH
Confidence 4568999999988865543222 33459999999984
No 163
>PF13245 AAA_19: Part of AAA domain
Probab=90.23 E-value=0.4 Score=37.05 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=31.8
Q ss_pred ccccccCCCCchhhHHHHHHhhhh--cCCCCCeEEecCCCchhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFK--TGIRGPFLVIAPLSTIPN 112 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~--~~~~~~~liv~P~~~~~~ 112 (513)
.++--..|.|||.+++..+..... ..+..++++++|....-.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 344677899999999998887774 234789999999855444
No 164
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=89.35 E-value=3.2 Score=47.38 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=25.5
Q ss_pred hccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHH
Q psy14708 342 LKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 342 l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
+.+..++..||||+..+--. .|+--+++||. ..+.-+++|..
T Consensus 286 ~vqR~~~fAIVDEvDSILID-----------EARTPLIISGp-~~~~~~~~y~~ 327 (1112)
T PRK12901 286 LVQRKHNYAIVDEVDSVLID-----------DARTPLIISGP-VPKGDDQEFEE 327 (1112)
T ss_pred hhCcCCceeEeechhhhhhc-----------cccCcEEEeCC-CCCccHHHHHH
Confidence 44557889999999754111 35566889985 33333344433
No 165
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=89.17 E-value=5.4 Score=43.57 Aligned_cols=42 Identities=17% Similarity=-0.018 Sum_probs=31.1
Q ss_pred CCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhh
Q psy14708 79 LGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAW 120 (513)
Q Consensus 79 lGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~ 120 (513)
-|||-.+.+.+...........+++++|. +....--+|++.+
T Consensus 265 ~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~ 307 (738)
T PHA03368 265 HGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGAR 307 (738)
T ss_pred CCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 49999888877777777777889999985 5555555665554
No 166
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.99 E-value=0.3 Score=44.37 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=26.1
Q ss_pred ccCCcEEEecHHHHHhchhh--h--ccccccEEEEccccccC
Q psy14708 322 LYKFHVLITTFEIIISDCLE--L--KDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~--l--~~~~~~~vIvDEaH~~k 359 (513)
....|||+.+|..+...... + ....-..||+||||++-
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 45678999999988775322 2 22345689999999983
No 167
>KOG0389|consensus
Probab=88.81 E-value=0.25 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=12.6
Q ss_pred CCeEEEecCCCccchHHHHHhh
Q psy14708 161 GPFLVIAPLSTIPNWQREFEAW 182 (513)
Q Consensus 161 ~~~LIv~P~sll~qW~~E~~~~ 182 (513)
-|.|.|-|-+--.+-.+|+...
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRER 492 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHH
Confidence 4666666655555555555543
No 168
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=88.80 E-value=2.4 Score=47.07 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=55.0
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+..|.++|..++.-+.....++.+. .++.--.|.|||+.+.+++.. ...++|||+|.
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~------------------~ll~Gl~gs~ka~lia~l~~~-----~~r~vLIVt~~ 66 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKH------------------QTLLGVTGSGKTFTMANVIAR-----LQRPTLVLAHN 66 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCc------------------EEEEcCCCcHHHHHHHHHHHH-----hCCCEEEEECC
Confidence 4678899999998887655433211 223344577999887665533 24689999998
Q ss_pred -CchhhHHHHHHhhcCCc-EEEE
Q psy14708 108 -STIPNWQREFEAWTDLN-VIVY 128 (513)
Q Consensus 108 -~~~~~W~~E~~~~~~~~-~~~~ 128 (513)
....+|.+++..|+|.. +..+
T Consensus 67 ~~~A~~l~~dL~~~~~~~~v~~f 89 (652)
T PRK05298 67 KTLAAQLYSEFKEFFPENAVEYF 89 (652)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEe
Confidence 77789999999999865 5544
No 169
>KOG0388|consensus
Probab=88.52 E-value=0.9 Score=49.06 Aligned_cols=58 Identities=45% Similarity=0.782 Sum_probs=45.0
Q ss_pred cccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC-CcEEEEcc
Q psy14708 55 ADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHA 130 (513)
Q Consensus 55 ~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~-~~~~~~~~ 130 (513)
|||||+|||+|++..-+-||. ...- .+|.|||+|.+++.+|..|+.+|.| ..+..+-|
T Consensus 592 ADeMGLGKTVQsisvlAhLaE----------------~~nI--wGPFLVVtpaStL~NWaqEisrFlP~~k~lpywG 650 (1185)
T KOG0388|consen 592 ADEMGLGKTVQSISVLAHLAE----------------THNI--WGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWG 650 (1185)
T ss_pred hhhhccchhHHHHHHHHHHHH----------------hccC--CCceEEeehHHHHhHHHHHHHHhCccceeecCcC
Confidence 899999999999754444444 3333 5799999999999999999999997 44444444
No 170
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.50 E-value=4.4 Score=41.75 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=37.8
Q ss_pred cccEEEEccccccCCcchhHH---HHHhhcc--cccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLL---EGLRLLH--LEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~---~al~~l~--a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
+.++||||++.+......... ..+.... ....++|++|--.+.+.+++.-...+++.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~ 315 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK 315 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 578999999998854322222 2222222 24678999999888888887776666554
No 171
>KOG0949|consensus
Probab=87.99 E-value=2 Score=48.36 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=42.7
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAW 120 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~ 120 (513)
.+|--....|||+..--++...++....+-++.++|. .++.|=..++...
T Consensus 529 avIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 529 AVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred eEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHh
Confidence 6667777889999999999999999999999999995 8888888776544
No 172
>PLN03025 replication factor C subunit; Provisional
Probab=87.93 E-value=2.4 Score=42.56 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=32.5
Q ss_pred cccEEEEccccccCCcchhHHHHHhh----cccccEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRL----LHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQ 403 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~----l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~ 403 (513)
++..||+||+|.+-. ....++.. .....++++++++...-+..|-+-...+....
T Consensus 99 ~~kviiiDE~d~lt~---~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 99 RHKIVILDEADSMTS---GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred CeEEEEEechhhcCH---HHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 478999999999833 22233322 24456788888776554455555444343333
No 173
>KOG0340|consensus
Probab=87.87 E-value=3.4 Score=41.27 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=35.6
Q ss_pred cCCcEEEecHHHHHhchh------hhccccccEEEEccccccCCcchhHHHHHhh----cc-cccEEEEeCCC
Q psy14708 323 YKFHVLITTFEIIISDCL------ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRL----LH-LEHRVLLSGTP 384 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~------~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~----l~-a~~r~~LTGTP 384 (513)
..+++|+++.+.+..... .+--.+...+|+|||.++-+..- ...+.. +. .+-.+++|+|-
T Consensus 124 ~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f--~d~L~~i~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 124 DRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCF--PDILEGIEECLPKPRQTLLFSATI 194 (442)
T ss_pred cCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccch--hhHHhhhhccCCCccceEEEEeeh
Confidence 456788888887765322 12222345799999999855432 222222 23 33578889885
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=87.07 E-value=2.4 Score=35.62 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=18.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~ 94 (513)
.+|.-.+|.|||..+..++.....
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 456677899999999888755543
No 175
>PHA02533 17 large terminase protein; Provisional
Probab=87.05 E-value=2.9 Score=45.09 Aligned_cols=53 Identities=13% Similarity=0.336 Sum_probs=31.2
Q ss_pred hccccccEEEEccccccCCcchhHHHHHh-hccc--ccEEEEeCCCC-CCCHHHHHHH
Q psy14708 342 LKDFNWRLCIIDEAHRLKNRNCKLLEGLR-LLHL--EHRVLLSGTPL-QNNVNELFSL 395 (513)
Q Consensus 342 l~~~~~~~vIvDEaH~~kn~~s~~~~al~-~l~a--~~r~~LTGTP~-~n~~~dl~~l 395 (513)
.+..+.+.+|+||+|.+++.. ....++. .+.+ ..++++..||- .|++-+++.-
T Consensus 165 ~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~~r~iiiSTp~G~n~fye~~~~ 221 (534)
T PHA02533 165 VRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRSSKIIITSTPNGLNHFYDIWTA 221 (534)
T ss_pred cCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCCceEEEEECCCchhhHHHHHHH
Confidence 345567889999999987643 2222222 2222 24688888885 3445555443
No 176
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=86.67 E-value=1.8 Score=48.02 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=35.5
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCC----cc----hhHHHHHhhc--ccccEEEEeCCC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKN----RN----CKLLEGLRLL--HLEHRVLLSGTP 384 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn----~~----s~~~~al~~l--~a~~r~~LTGTP 384 (513)
.++.+++..+++-+....+.. +||.||+||+-..-+ +. ......+..+ .++..++|-||-
T Consensus 121 ~~~rLivqIdSL~R~~~~~l~-~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDGSLLD-RYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ccCeEEEEehhhhhccccccc-ccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 456777778877665543221 489999999865421 11 1111222232 578888888875
No 177
>KOG1132|consensus
Probab=86.45 E-value=5.5 Score=44.43 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=27.3
Q ss_pred cccCCcEEEecHHHHHhchh-hhc--cccccEEEEcccccc
Q psy14708 321 DLYKFHVLITTFEIIISDCL-ELK--DFNWRLCIIDEAHRL 358 (513)
Q Consensus 321 ~~~~~~vvitt~~~~~~~~~-~l~--~~~~~~vIvDEaH~~ 358 (513)
...+.|+++..|..+.+... ... ++.-..||+||||++
T Consensus 219 l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHNi 259 (945)
T KOG1132|consen 219 LKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHNI 259 (945)
T ss_pred hcccCcEEEechhhhcCHhhhccccccccccEEEEeccccH
Confidence 45678899999998876422 222 333469999999998
No 178
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=86.37 E-value=7.3 Score=44.53 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=21.4
Q ss_pred hccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCC
Q psy14708 342 LKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGT 383 (513)
Q Consensus 342 l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGT 383 (513)
+.+..++.+||||+..+--. .|+.=+++||.
T Consensus 254 ~vqR~~~faIVDEvDSvLID-----------eARTPLIISgp 284 (1025)
T PRK12900 254 MVQRDFYFAIVDEVDSVLID-----------EARTPLIISGP 284 (1025)
T ss_pred hhccCCceEEEechhhhhhc-----------cccCceEEeCC
Confidence 45567899999999754111 35566889984
No 179
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=85.67 E-value=3.8 Score=46.22 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=13.9
Q ss_pred hhcccccccCCCCchhhHHH
Q psy14708 68 TRNCILADEMGLGKTIQSLT 87 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~ia 87 (513)
-.|.|--...|=|||+++..
T Consensus 98 h~G~IAEM~TGEGKTL~atl 117 (939)
T PRK12902 98 HEGQIAEMKTGEGKTLVATL 117 (939)
T ss_pred cCCceeeecCCCChhHHHHH
Confidence 34555556789999998653
No 180
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=85.41 E-value=4.1 Score=41.85 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.8
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
.+|.-++|.|||..++.++....
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 35777899999999888765543
No 181
>KOG0384|consensus
Probab=85.15 E-value=0.92 Score=51.91 Aligned_cols=59 Identities=61% Similarity=1.057 Sum_probs=48.5
Q ss_pred cccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcce
Q psy14708 55 ADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHAT 131 (513)
Q Consensus 55 ~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~ 131 (513)
|||||||||+|.++.-.-|.+ ..+.. +|.|||+|.+.+..|.+||..|...++.++++.
T Consensus 395 ADEmgLgktvqti~fl~~l~~----------------~~~~~--gpflvvvplst~~~W~~ef~~w~~mn~i~y~g~ 453 (1373)
T KOG0384|consen 395 ADEMGLGKTVQTITFLSYLFH----------------SLQIH--GPFLVVVPLSTITAWEREFETWTDMNVIVYHGN 453 (1373)
T ss_pred hhhcCCCcchHHHHHHHHHHH----------------hhhcc--CCeEEEeehhhhHHHHHHHHHHhhhceeeeecc
Confidence 899999999997654443333 33222 589999999999999999999999999999996
No 182
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=85.07 E-value=0.64 Score=53.33 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=31.9
Q ss_pred ccccCCCeEEEecCCCccchHHHHHhhcCceeEEEecc
Q psy14708 156 KTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGR 193 (513)
Q Consensus 156 ~~~~~~~~LIv~P~sll~qW~~E~~~~~~l~~~~~~g~ 193 (513)
..+..++.|||||.+|+.||..|+.+++++...++.+.
T Consensus 195 ~~g~~~rvLIVvP~sL~~QW~~El~~kF~l~~~i~~~~ 232 (956)
T PRK04914 195 LTGRAERVLILVPETLQHQWLVEMLRRFNLRFSLFDEE 232 (956)
T ss_pred HcCCCCcEEEEcCHHHHHHHHHHHHHHhCCCeEEEcCc
Confidence 34566899999999999999999998888777777654
No 183
>PRK08727 hypothetical protein; Validated
Probab=84.46 E-value=4.8 Score=38.39 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=17.4
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
-+|.-..|+|||..+-|+.....
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56778889999988877765443
No 184
>KOG0337|consensus
Probab=84.36 E-value=2.9 Score=42.69 Aligned_cols=62 Identities=26% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCC--cchhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKN--RNCKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn--~~s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..|+++.|...+...... +..-....||+||+.++-. ...+....+..+. ..-.+++|||-.
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp 206 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLP 206 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCc
Confidence 345677666665553222 3333456899999999833 3456666777774 346899999964
No 185
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.24 E-value=8 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=17.4
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-++.-..|.|||..|.+++..+
T Consensus 40 yLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 40 YLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4777888999999998876554
No 186
>KOG0387|consensus
Probab=83.83 E-value=0.49 Score=51.66 Aligned_cols=86 Identities=37% Similarity=0.738 Sum_probs=71.7
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|+|||++||+||++.+.++ .||||+||||||||+|+|+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~-------------------~GGILgDeMGLGKTIQiis--------------------- 243 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQR-------------------AGGILGDEMGLGKTIQIIS--------------------- 243 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhcc-------------------CCCeecccccCccchhHHH---------------------
Confidence 589999999999999877644 3588999999999999998
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhcc-ccCCCeEEEecCCCccchHHHHHhhc-Cce
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLN 186 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LIv~P~sll~qW~~E~~~~~-~l~ 186 (513)
+++..... ...+|.|||||.+++.||.+|+++|. .++
T Consensus 244 -----------------------------------------FLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 244 -----------------------------------------FLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred -----------------------------------------HHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceE
Confidence 22222222 45599999999999999999999997 889
Q ss_pred eEEEecccc
Q psy14708 187 VIVYHGRRK 195 (513)
Q Consensus 187 ~~~~~g~~~ 195 (513)
+.+|||...
T Consensus 283 v~ilh~t~s 291 (923)
T KOG0387|consen 283 VFILHGTGS 291 (923)
T ss_pred EEEEecCCc
Confidence 999999765
No 187
>KOG0346|consensus
Probab=83.45 E-value=4.6 Score=41.50 Aligned_cols=63 Identities=16% Similarity=0.048 Sum_probs=37.9
Q ss_pred ccCCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCC
Q psy14708 322 LYKFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTP 384 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP 384 (513)
.+.++||++|...+...... ...-....+|+|||.-+-..+ -...+....|. .--.++||||-
T Consensus 143 ~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl 211 (569)
T KOG0346|consen 143 MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATL 211 (569)
T ss_pred ccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhh
Confidence 45678999999988764332 222235579999999874322 22223333343 33467888886
No 188
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.21 E-value=3.7 Score=45.67 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=24.4
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc---ccccEEEEeCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL---HLEHRVLLSGTPL 385 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l---~a~~r~~LTGTP~ 385 (513)
+|.++||||+|.+.+ ......++.| ....+++|+.|-.
T Consensus 119 r~KVIIIDEah~LT~--~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 119 RFKVYMIDEVHMLTN--HAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CceEEEEeChhhCCH--HHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 578999999999943 2233334444 3456777777654
No 189
>KOG0391|consensus
Probab=82.83 E-value=1.4 Score=50.20 Aligned_cols=59 Identities=46% Similarity=0.794 Sum_probs=48.4
Q ss_pred cccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC-CcEEEEcce
Q psy14708 55 ADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHAT 131 (513)
Q Consensus 55 ~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~-~~~~~~~~~ 131 (513)
|||||||||+|.+..-+-||=+-| +.+|.|||||.+++-+|.-|+++|.+ .++..|.|.
T Consensus 640 ADEmGLGKTIQtISllAhLACeeg------------------nWGPHLIVVpTsviLnWEMElKRwcPglKILTYyGs 699 (1958)
T KOG0391|consen 640 ADEMGLGKTIQTISLLAHLACEEG------------------NWGPHLIVVPTSVILNWEMELKRWCPGLKILTYYGS 699 (1958)
T ss_pred hhhhcccchhHHHHHHHHHHhccc------------------CCCCceEEeechhhhhhhHHHhhhCCcceEeeecCC
Confidence 899999999998754444444433 47899999999999999999999995 788888775
No 190
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=82.24 E-value=3.7 Score=40.52 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=19.8
Q ss_pred cccccccCCCCchhhHHHHHHhhhhc
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~~ 95 (513)
+-++.-+.|+|||..|-++...+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46777899999999997776555443
No 191
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.05 E-value=21 Score=39.26 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=23.5
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc---ccccEEEEeCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL---HLEHRVLLSGTP 384 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l---~a~~r~~LTGTP 384 (513)
+|.++||||+|.+.. ......++.| ....+++|..|=
T Consensus 124 r~KViIIDEah~Ls~--~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 124 RFKVYMIDEVHMLTN--HAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CceEEEEEChHhcCH--HHHHHHHHhhccCCCCceEEEEeCC
Confidence 578999999999932 2333444445 234566776663
No 192
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=81.94 E-value=19 Score=38.57 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
+.++.-..|+|||.+|-.++..+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788889999999998886554
No 193
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.65 E-value=3.5 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=18.4
Q ss_pred cccccccCCCCchhhHHHHHHhhhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~ 94 (513)
+-+|.-+.|+|||..+-|+......
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~ 167 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIES 167 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568889999999888776554443
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=81.43 E-value=14 Score=37.26 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=30.6
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc----c-cccEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL----H-LEHRVLLSGTPLQNNVNELFSLLNFLEP 401 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l----~-a~~r~~LTGTP~~n~~~dl~~ll~~L~~ 401 (513)
+.++||+|.++++.++... ...+..+ . ....+++++|.-++.+.........++.
T Consensus 222 ~~DvVLIDTaGr~~~~~~l-m~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~ 281 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANL-MDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGI 281 (336)
T ss_pred CCCEEEEECCCccCCcHHH-HHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCC
Confidence 4689999999998654433 2233333 2 3345778887654444444333333433
No 195
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.19 E-value=5.2 Score=38.16 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=22.7
Q ss_pred ccEEEEccccccCCcchh---HHHHHhhcc-c-ccEEEEeCC
Q psy14708 347 WRLCIIDEAHRLKNRNCK---LLEGLRLLH-L-EHRVLLSGT 383 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~---~~~al~~l~-a-~~r~~LTGT 383 (513)
.++||+||+|++.+.... ....+..+. . ..++++||+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 368999999999654321 122333332 2 347888887
No 196
>KOG0920|consensus
Probab=81.12 E-value=7.7 Score=44.09 Aligned_cols=75 Identities=19% Similarity=0.079 Sum_probs=45.8
Q ss_pred EEEecHHHHHhchhh-hccccccEEEEccccccCCcchhHHHHHhhc----ccccEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy14708 327 VLITTFEIIISDCLE-LKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL----HLEHRVLLSGTPLQNNVNELFSLLNFLEP 401 (513)
Q Consensus 327 vvitt~~~~~~~~~~-l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~ll~~L~~ 401 (513)
+..+|++.+.+.... -..-+...||+||.|.=--..--....++.+ ..-+.++||||--...+++.|+....+..
T Consensus 267 L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i 346 (924)
T KOG0920|consen 267 LLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITI 346 (924)
T ss_pred EEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEee
Confidence 556677766664332 1222457899999997322222333334443 34467899999987788888875555443
No 197
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.05 E-value=22 Score=38.17 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.4
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
++.-..|+|||..|..++..+
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 42 LFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 566778999999988876554
No 198
>PRK06526 transposase; Provisional
Probab=81.03 E-value=3.9 Score=39.63 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=18.3
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~ 95 (513)
-+|.-..|.|||..+.++.......
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHC
Confidence 5566677889999999886555433
No 199
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=80.99 E-value=4.8 Score=45.52 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=41.1
Q ss_pred EEEecHHHHHhchh-hhccccccEEEEccccccCCcchhHH-HHHhh----ccc-ccEEEEeCCCCCCCHHHHHHHHhhh
Q psy14708 327 VLITTFEIIISDCL-ELKDFNWRLCIIDEAHRLKNRNCKLL-EGLRL----LHL-EHRVLLSGTPLQNNVNELFSLLNFL 399 (513)
Q Consensus 327 vvitt~~~~~~~~~-~l~~~~~~~vIvDEaH~~kn~~s~~~-~al~~----l~a-~~r~~LTGTP~~n~~~dl~~ll~~L 399 (513)
+-+.|-+.+.+... ....-+++.||+||+|.= .-++... -.++. .+. -+.++||+|-=..+++.+++.+..+
T Consensus 142 ik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-Sl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi 220 (845)
T COG1643 142 IKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-SLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVI 220 (845)
T ss_pred eEEeccHHHHHHHhhCcccccCCEEEEcchhhh-hHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEE
Confidence 44455555554332 233446889999999971 1122111 11222 232 3568999999777888877764444
No 200
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.98 E-value=13 Score=39.64 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=16.7
Q ss_pred cccccccCCCCchhhHHHHHHh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~ 91 (513)
+-++.-..|+|||.+|..++..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 3567778899999988777543
No 201
>KOG0922|consensus
Probab=80.93 E-value=4.8 Score=43.49 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=35.5
Q ss_pred cccEEEEccccccCCcchhHHHHH----hhc---ccc-cEEEEeCCCCCCCHHHHHHHHhhhC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGL----RLL---HLE-HRVLLSGTPLQNNVNELFSLLNFLE 400 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al----~~l---~a~-~r~~LTGTP~~n~~~dl~~ll~~L~ 400 (513)
++..||+||||. .+-..-.+ +.+ +.. +.+++|||-=...++++|+-...+.
T Consensus 163 kYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i~~ 221 (674)
T KOG0922|consen 163 KYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPILT 221 (674)
T ss_pred cccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCceEe
Confidence 578999999996 33333333 222 333 5689999998889999988755543
No 202
>KOG0336|consensus
Probab=80.73 E-value=9.6 Score=38.87 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=38.4
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCC--cchhHHHHHhhcccccEEEE-eCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKN--RNCKLLEGLRLLHLEHRVLL-SGT 383 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn--~~s~~~~al~~l~a~~r~~L-TGT 383 (513)
+.++++.+...+..... .+..-....+|+|||.++-. ..-+..+.+..++..+-.+| |+|
T Consensus 343 gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSAT 407 (629)
T KOG0336|consen 343 GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSAT 407 (629)
T ss_pred CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeeccc
Confidence 45678888877766422 12223466899999999855 34456677777776665444 455
No 203
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.50 E-value=6.8 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.2
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
|+.-+.|.|||..+..++..+
T Consensus 42 LFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 678889999999998887554
No 204
>KOG0352|consensus
Probab=80.38 E-value=7.2 Score=40.00 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=38.0
Q ss_pred cEEEEccccccCC------cchhHHHHHhhc-ccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 348 RLCIIDEAHRLKN------RNCKLLEGLRLL-HLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 348 ~~vIvDEaH~~kn------~~s~~~~al~~l-~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
..+++||||-... ++-...-+++.. ..--.+.||+|--..--+|++..+++-.|-
T Consensus 143 ~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PV 204 (641)
T KOG0352|consen 143 RYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPV 204 (641)
T ss_pred eeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcH
Confidence 5789999998732 222233333333 233467899999988999999999987773
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.22 E-value=6.5 Score=36.41 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=35.3
Q ss_pred cccEEEEccccccCCcchhHH---HHHhhc-ccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLL---EGLRLL-HLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~---~al~~l-~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
++|+|+||-+-+..+...... +.+..+ ..+..++|++|--+..+.++......+++.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGID 143 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCc
Confidence 578999999987644333222 112222 445678999998777777666666666554
No 206
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.17 E-value=5.2 Score=37.59 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=23.7
Q ss_pred cEEEEccccccCCcc---hhHHHHHhhc-ccccEEEEeCCCCC
Q psy14708 348 RLCIIDEAHRLKNRN---CKLLEGLRLL-HLEHRVLLSGTPLQ 386 (513)
Q Consensus 348 ~~vIvDEaH~~kn~~---s~~~~al~~l-~a~~r~~LTGTP~~ 386 (513)
+.||+||+|.+.... ......+..+ ....++++|+|...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 589999999986532 2223333332 23457888888543
No 207
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.14 E-value=18 Score=37.46 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=32.0
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc---c-cccEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL---H-LEHRVLLSGTPLQNNVNELFSLLNFLEP 401 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l---~-a~~r~~LTGTP~~n~~~dl~~ll~~L~~ 401 (513)
++|+||||-+-+..+...........+ . ....++||+|--.+...++...++.++.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~i 379 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI 379 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCC
Confidence 578999999977544333222222222 2 2234667887666666666665555444
No 208
>CHL00181 cbbX CbbX; Provisional
Probab=79.87 E-value=7.7 Score=38.29 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~ 94 (513)
-+|.-..|+|||..|-++......
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 477889999999999888655543
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.26 E-value=17 Score=35.06 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=14.9
Q ss_pred ccccccCCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 71 giLademGlGKT~~~iali~ 90 (513)
.+|.-+.|.|||..+-.+..
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45677888899987776643
No 210
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=79.24 E-value=6.2 Score=44.46 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=14.2
Q ss_pred hcccccccCCCCchhhHHHHH
Q psy14708 69 RNCILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali 89 (513)
.|-|.-...|=|||+++...+
T Consensus 90 ~G~IaEm~TGEGKTL~a~l~a 110 (870)
T CHL00122 90 DGKIAEMKTGEGKTLVATLPA 110 (870)
T ss_pred CCccccccCCCCchHHHHHHH
Confidence 455555678999999765433
No 211
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.14 E-value=1.2 Score=49.51 Aligned_cols=71 Identities=27% Similarity=0.542 Sum_probs=58.1
Q ss_pred CCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 27 NDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 27 ~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
...+|||||.+++.+|.. +++ .++|+|...+|+|||+++++++... .+++|||||
T Consensus 252 ~~~~LRpYQ~eAl~~~~~---~gr-----------------~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvp 306 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFG---NGR-----------------ARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCT 306 (732)
T ss_pred cCCCcCHHHHHHHHHHHh---cCC-----------------CCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeC
Confidence 347899999999998862 111 3459999999999999999887654 368999999
Q ss_pred C-CchhhHHHHHHhhcC
Q psy14708 107 L-STIPNWQREFEAWTD 122 (513)
Q Consensus 107 ~-~~~~~W~~E~~~~~~ 122 (513)
. .++.||.+||.+|..
T Consensus 307 s~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 307 SAVSVEQWKQQFKMWST 323 (732)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 7 569999999999974
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.93 E-value=15 Score=38.52 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=36.7
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-c-----cccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-H-----LEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~-----a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
++++||||.+-+....... ...+..+ . ....++|++|+-.+.+.+++..++.+.+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~ 360 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLD 360 (424)
T ss_pred CCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 4689999999775433222 2222222 2 24478999999888888888777766653
No 213
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=78.32 E-value=12 Score=42.16 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=35.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+-|++++.-+... . +-.+|---.|+|||.++-+++...... ..+++.++|..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s---~-------------------~~~il~G~aGTGKTtll~~i~~~~~~~--g~~V~~~ApTg 406 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS---G-------------------DIAVVVGRAGTGKSTMLKAAREAWEAA--GYRVIGAALSG 406 (744)
T ss_pred CCCCHHHHHHHHHHhcC---C-------------------CEEEEEecCCCCHHHHHHHHHHHHHhC--CCeEEEEeCcH
Confidence 46788899998776510 0 115677778899998877766544433 24455555553
Q ss_pred c
Q psy14708 109 T 109 (513)
Q Consensus 109 ~ 109 (513)
.
T Consensus 407 ~ 407 (744)
T TIGR02768 407 K 407 (744)
T ss_pred H
Confidence 3
No 214
>KOG0386|consensus
Probab=77.87 E-value=1.8 Score=48.60 Aligned_cols=59 Identities=49% Similarity=0.894 Sum_probs=46.4
Q ss_pred cccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC-CcEEEEcce
Q psy14708 55 ADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHAT 131 (513)
Q Consensus 55 ~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~-~~~~~~~~~ 131 (513)
|||||+|||+|.+. -|+.++...... +|.|||+|.+++.+|..||.+|.+ .....+.|+
T Consensus 419 ADEMGLGKTIQtIs----------------LitYLmE~K~~~--GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGt 478 (1157)
T KOG0386|consen 419 ADEMGLGKTIQTIS----------------LITYLMEHKQMQ--GPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGT 478 (1157)
T ss_pred chhcccchHHHHHH----------------HHHHHHHHcccC--CCeEEeccccccCCchhhccccccceeeeeeeCC
Confidence 89999999998754 455555555554 689999999999999999999997 455555554
No 215
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=77.76 E-value=5.9 Score=41.88 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~ 95 (513)
.+|.-..|+|||..+-++.....+.
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5788899999999888876554433
No 216
>KOG0989|consensus
Probab=77.62 E-value=8.4 Score=37.96 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=16.6
Q ss_pred ccccCCCCchhhHHHHHHhhh
Q psy14708 73 LADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~ 93 (513)
+.-..|+|||-+++++...+.
T Consensus 62 FyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 62 FYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred eeCCCCCcHhHHHHHHHHHhc
Confidence 444689999999999986653
No 217
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=77.28 E-value=5.9 Score=41.19 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=19.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~ 95 (513)
-+|.-..|+|||..+-++.....+.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4688889999999988876555443
No 218
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=76.95 E-value=12 Score=39.50 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=18.5
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~ 95 (513)
-+|.-..|+|||..+-++.....+.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 5788889999998887766554443
No 219
>KOG0329|consensus
Probab=76.86 E-value=4.9 Score=38.29 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcchhHHHHHhhc-----ccccEEEEeCCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL-----HLEHRVLLSGTP 384 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l-----~a~~r~~LTGTP 384 (513)
.+.||+-|.+.+..... .+..-+....|+||+..+-. .-...+-+..+ +.+-..+.|+|-
T Consensus 161 ~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle-~lDMrRDvQEifr~tp~~KQvmmfsatl 227 (387)
T KOG0329|consen 161 CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATL 227 (387)
T ss_pred CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH-HHHHHHHHHHHhhcCcccceeeeeeeec
Confidence 56688888887655322 23333456789999986521 11122222222 234456778875
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=76.83 E-value=11 Score=31.81 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=25.6
Q ss_pred cccEEEEccccccCCc-chhHHHHHhhcc------cccEEEEeCCCCCC
Q psy14708 346 NWRLCIIDEAHRLKNR-NCKLLEGLRLLH------LEHRVLLSGTPLQN 387 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~-~s~~~~al~~l~------a~~r~~LTGTP~~n 387 (513)
....+|+||++.+... .......+..+. ...++++++++...
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 3468999999987221 122333444442 45678888887654
No 221
>KOG0951|consensus
Probab=76.53 E-value=12 Score=43.70 Aligned_cols=82 Identities=21% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchh------hhhhcccccccCCCCchhhHHHHHHhhhhc
Q psy14708 22 SPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ------SLTRNCILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 22 ~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~------~~~~GgiLademGlGKT~~~iali~~~~~~ 95 (513)
|-.+..+..|++.|-..+.-|-+ ...-++..+.-+. ..| .-.+..+++..-|.|||+.|--.+. +.
T Consensus 1112 pek~p~pt~lld~~~~~~~~l~N---~~~~~lf~~~n~i--qtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l---~~ 1183 (1674)
T KOG0951|consen 1112 PEKYPPPTELLDLQPLPVSALRN---PSFETLFQDFNPI--QTQVFTSLYNTNDNVLVGAPNGSGKTACAELALL---RP 1183 (1674)
T ss_pred cccCCCCchhhhccccchhccCC---cchhhhccccCCc--eEEEEeeeecccceEEEecCCCCchhHHHHHHhc---CC
Confidence 33444556788888877755531 1111222222111 111 2345678999999999998743322 25
Q ss_pred CCCCCeEEecCCCchh
Q psy14708 96 GIRGPFLVIAPLSTIP 111 (513)
Q Consensus 96 ~~~~~~liv~P~~~~~ 111 (513)
....+++.++|.+.+.
T Consensus 1184 ~~~~~~vyi~p~~~i~ 1199 (1674)
T KOG0951|consen 1184 DTIGRAVYIAPLEEIA 1199 (1674)
T ss_pred ccceEEEEecchHHHH
Confidence 5566677777765444
No 222
>KOG1805|consensus
Probab=76.45 E-value=9.4 Score=43.16 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=27.5
Q ss_pred hhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCC
Q psy14708 340 LELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTP 384 (513)
Q Consensus 340 ~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP 384 (513)
..|...+||.+|||||..+--+ -.+.-|.-..+.+|-|-+
T Consensus 790 plf~~R~FD~cIiDEASQI~lP-----~~LgPL~~s~kFVLVGDh 829 (1100)
T KOG1805|consen 790 PLFVNRQFDYCIIDEASQILLP-----LCLGPLSFSNKFVLVGDH 829 (1100)
T ss_pred hhhhccccCEEEEccccccccc-----hhhhhhhhcceEEEeccc
Confidence 3455667999999999877333 334555666778888854
No 223
>KOG0326|consensus
Probab=76.31 E-value=13 Score=36.74 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=34.5
Q ss_pred CcEEEecHHHHHhch----hhhccccccEEEEccccccCCcch--hHHHHHhhc-ccccEEEEeCCCC
Q psy14708 325 FHVLITTFEIIISDC----LELKDFNWRLCIIDEAHRLKNRNC--KLLEGLRLL-HLEHRVLLSGTPL 385 (513)
Q Consensus 325 ~~vvitt~~~~~~~~----~~l~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l-~a~~r~~LTGTP~ 385 (513)
.++++.|...+.... ..+.. -..+|+|||..+-..+- ..-+.+.-| +.+-.++-|+|-.
T Consensus 204 VH~~vgTPGRIlDL~~KgVa~ls~--c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP 269 (459)
T KOG0326|consen 204 VHLVVGTPGRILDLAKKGVADLSD--CVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFP 269 (459)
T ss_pred eEEEEcCChhHHHHHhcccccchh--ceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccc
Confidence 345666666655432 22333 35789999999855332 223444444 4556788899943
No 224
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=75.96 E-value=8.7 Score=35.34 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=23.7
Q ss_pred ccEEEEccccccCCcchhHHHHHhhccc--ccEEEEeC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLLHL--EHRVLLSG 382 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l~a--~~r~~LTG 382 (513)
.+.|+|||||.+ +......+..+.. ..+++++|
T Consensus 83 ~~~v~IDEaQF~---~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEAQFF---DEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred cCEEEEehhHhC---CHHHHHHHHHHHhhcCCEEEEec
Confidence 679999999999 3345556666644 46677777
No 225
>KOG0392|consensus
Probab=75.87 E-value=3.9 Score=47.14 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=11.6
Q ss_pred ccccEEEEeCCCCCCCHHHHHHHHhh
Q psy14708 373 HLEHRVLLSGTPLQNNVNELFSLLNF 398 (513)
Q Consensus 373 ~a~~r~~LTGTP~~n~~~dl~~ll~~ 398 (513)
..++.++==|-=+.|+=.-++.-+.-
T Consensus 1100 ~wNYcVLDEGHVikN~ktkl~kavkq 1125 (1549)
T KOG0392|consen 1100 DWNYCVLDEGHVIKNSKTKLTKAVKQ 1125 (1549)
T ss_pred ccceEEecCcceecchHHHHHHHHHH
Confidence 34444444444444444444443333
No 226
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=75.19 E-value=2.3 Score=47.50 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=29.0
Q ss_pred ccCCcEEEecHHHHHhchhh-----hccccccEEEEccccccC
Q psy14708 322 LYKFHVLITTFEIIISDCLE-----LKDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~-----l~~~~~~~vIvDEaH~~k 359 (513)
....|||||++.-+..+... |.....+.+||||||++-
T Consensus 217 a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~ 259 (697)
T PRK11747 217 IDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLP 259 (697)
T ss_pred HhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchH
Confidence 34678999999988877632 333357889999999994
No 227
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.94 E-value=23 Score=36.17 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.3
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-++.-+.|+|||..+.+++...
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 3677888999999998876544
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.86 E-value=21 Score=37.88 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.6
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-++.-+.|.|||..|..++..+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3677888999999998887554
No 229
>KOG0926|consensus
Probab=74.68 E-value=8.6 Score=42.61 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=41.3
Q ss_pred EEEecHHHHHhchh-hhccccccEEEEccccccCCcchhHHHHHhhc--------------ccccEEEEeCCCCCCCHHH
Q psy14708 327 VLITTFEIIISDCL-ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL--------------HLEHRVLLSGTPLQNNVNE 391 (513)
Q Consensus 327 vvitt~~~~~~~~~-~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l--------------~a~~r~~LTGTP~~n~~~d 391 (513)
|-..|-+.+.+... .|..-.+..||+||||.=.-.+-...-++..+ +.-+-++||||.=..++.+
T Consensus 352 IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFte 431 (1172)
T KOG0926|consen 352 IKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTE 431 (1172)
T ss_pred eEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEeccccc
Confidence 55555565555432 34445678999999997322222222333322 1334689999997777776
Q ss_pred HHHHHhh
Q psy14708 392 LFSLLNF 398 (513)
Q Consensus 392 l~~ll~~ 398 (513)
=..++..
T Consensus 432 nk~LFpi 438 (1172)
T KOG0926|consen 432 NKRLFPI 438 (1172)
T ss_pred CceecCC
Confidence 4444443
No 230
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=74.11 E-value=9.1 Score=41.76 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=24.1
Q ss_pred ccEEEEccccccCCcchhH---HHHHhhcc-cccEEEEeCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKL---LEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~---~~al~~l~-a~~r~~LTGTP~ 385 (513)
.++||||+.|.+.+..... ...+..+. ..+.+++|+.-.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 5899999999997755432 23333332 345577777643
No 231
>KOG1133|consensus
Probab=73.22 E-value=2.6 Score=45.62 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=28.3
Q ss_pred cccCCcEEEecHHHHHhchhh--h-ccccccEEEEccccccCC
Q psy14708 321 DLYKFHVLITTFEIIISDCLE--L-KDFNWRLCIIDEAHRLKN 360 (513)
Q Consensus 321 ~~~~~~vvitt~~~~~~~~~~--l-~~~~~~~vIvDEaH~~kn 360 (513)
.....++|+-.|+.+...... + -...=..|||||||++-+
T Consensus 320 avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 320 AVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred ccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 345667999999998875432 1 223447999999999844
No 232
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=72.84 E-value=16 Score=41.55 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=49.9
Q ss_pred cEEEecHHHHHhchh--hhccccccEEEEccccccCCcchhHHHHHhhc----ccccEEEEeCCCCC--CCHHHHHHHHh
Q psy14708 326 HVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL----HLEHRVLLSGTPLQ--NNVNELFSLLN 397 (513)
Q Consensus 326 ~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l----~a~~r~~LTGTP~~--n~~~dl~~ll~ 397 (513)
.|+..|-..+..|.- .+.--.+..|||||||++.+..+-.. .++.. +..+..++|+.|-. .+++-+-.++.
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 377788888777642 23333577999999999955433222 22222 44568899999975 46677777777
Q ss_pred hhCCC
Q psy14708 398 FLEPQ 402 (513)
Q Consensus 398 ~L~~~ 402 (513)
-|...
T Consensus 88 ~L~i~ 92 (814)
T TIGR00596 88 NLFLR 92 (814)
T ss_pred HhCcC
Confidence 77665
No 233
>KOG0334|consensus
Probab=72.48 E-value=9.2 Score=43.49 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=32.8
Q ss_pred CcEEEecHHHHHhchh-----hhccccccEEEEccccccCC--cchhHHHHHhhccccc-EEEEeCCCC
Q psy14708 325 FHVLITTFEIIISDCL-----ELKDFNWRLCIIDEAHRLKN--RNCKLLEGLRLLHLEH-RVLLSGTPL 385 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~-----~l~~~~~~~vIvDEaH~~kn--~~s~~~~al~~l~a~~-r~~LTGTP~ 385 (513)
.+|+|.|.+.+..... ...-.+-..||+|||.++-. ..-+..+.+..++..+ .++-|+|-+
T Consensus 489 ~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfp 557 (997)
T KOG0334|consen 489 AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFP 557 (997)
T ss_pred CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhh
Confidence 4577777776655322 22223345799999999742 2222333555554433 445556643
No 234
>PRK05642 DNA replication initiation factor; Validated
Probab=72.28 E-value=15 Score=34.99 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=23.0
Q ss_pred ccEEEEccccccCCcchh---HHHHHhhcc-cccEEEEeCC
Q psy14708 347 WRLCIIDEAHRLKNRNCK---LLEGLRLLH-LEHRVLLSGT 383 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~---~~~al~~l~-a~~r~~LTGT 383 (513)
.+.+|+|+.|.+.+.... ....+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 478999999998654332 222232332 3567888887
No 235
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=72.27 E-value=22 Score=41.37 Aligned_cols=38 Identities=32% Similarity=0.381 Sum_probs=25.4
Q ss_pred ccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGTPLQ 386 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGTP~~ 386 (513)
-++|||||+..+... .....+... ....+++|.|=|-|
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~Q 472 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQ 472 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHH
Confidence 469999999988322 233333333 56789999997654
No 236
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=72.14 E-value=27 Score=36.19 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=19.2
Q ss_pred hhcccccccCCCCchhhHHHHHHhh
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~ 92 (513)
..+-++.-..|.|||..+.++....
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3345677889999999999886554
No 237
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.83 E-value=41 Score=34.85 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=17.5
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
-|+.-..|.|||..|.+++..+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 34667889999999988875553
No 238
>PRK08181 transposase; Validated
Probab=71.41 E-value=20 Score=34.98 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=17.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~ 94 (513)
-+|.-..|.|||..+.|+.....+
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHH
Confidence 456666777999998887655433
No 239
>KOG1016|consensus
Probab=71.36 E-value=1.1 Score=48.99 Aligned_cols=57 Identities=32% Similarity=0.419 Sum_probs=41.7
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHH
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali 89 (513)
=|++--++++... .-.-|-|||||..||||||+|.+..--|+.-..- .||+.+|.=|
T Consensus 265 FlYDN~iESl~ry--kkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-AKtVL~ivPi 321 (1387)
T KOG1016|consen 265 FLYDNTIESLGRY--KKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-AKTVLVIVPI 321 (1387)
T ss_pred EehhhHHHHHhhc--cccCCcceeeeeccccCceeEEeehhHHHhhcCc-cceEEEEEeh
Confidence 4777777776422 2236778999999999999999887777666554 7887776543
No 240
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=70.56 E-value=7.2 Score=39.87 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=15.0
Q ss_pred cccccccCCCCchhhHHHHH
Q psy14708 70 NCILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 70 GgiLademGlGKT~~~iali 89 (513)
.-||.-..|.|||..+-.+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred eeEEECCCCCCHHHHHHHHH
Confidence 35788899999997765543
No 241
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=15 Score=37.71 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=26.3
Q ss_pred cEEEecHHHHHhchhhhccccccEEEEccccccCCc
Q psy14708 326 HVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNR 361 (513)
Q Consensus 326 ~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~ 361 (513)
++.+.....+.+....+...++++||+|-.|-+-.+
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 355555556666666677788999999999988553
No 242
>PRK06893 DNA replication initiation factor; Validated
Probab=70.05 E-value=17 Score=34.44 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=16.6
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-+|.-..|+|||..+-|+....
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3677888999998887766443
No 243
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=69.35 E-value=18 Score=40.88 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=12.0
Q ss_pred cccccccCCCCchhhHHH
Q psy14708 70 NCILADEMGLGKTIQSLT 87 (513)
Q Consensus 70 GgiLademGlGKT~~~ia 87 (513)
|.|.-...|=|||+++..
T Consensus 93 G~IAEMkTGEGKTLvAtL 110 (925)
T PRK12903 93 GSVAEMKTGEGKTITSIA 110 (925)
T ss_pred CCeeeecCCCCccHHHHH
Confidence 344445678899998654
No 244
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=69.14 E-value=18 Score=32.81 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=20.6
Q ss_pred ccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSG 382 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTG 382 (513)
++.|+|||+|.+. ......+..+ .....+.++|
T Consensus 77 ~dvI~IDEaQFf~---~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 77 YDVIGIDEAQFFD---EQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp CSEEEESSGGGST---TTHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEechHhhH---HHHHHHHHHHHhCCCeEEEEe
Confidence 7899999999995 2333444444 3344555555
No 245
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.89 E-value=21 Score=37.67 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.8
Q ss_pred cccccCCCCchhhHHHHHHhhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~ 93 (513)
+|.-++|.|||..++.++....
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999988876543
No 246
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.63 E-value=32 Score=37.54 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.3
Q ss_pred cccccCCCCchhhHHHHHHhhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~ 93 (513)
++.-.-|+|||..+.+++..+.
T Consensus 39 Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 39 LFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 5677889999999988875543
No 247
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=68.12 E-value=5.4 Score=39.35 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=27.7
Q ss_pred ccccCCCCchhhHHHHHHhhhhcC--CCCCeEEecCCCch
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAPLSTI 110 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~--~~~~~liv~P~~~~ 110 (513)
+--..|.|||.+.+.-++.+...+ +..++|++++....
T Consensus 18 V~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 18 VNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp EEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred EEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 333479999999998877666554 67788999987543
No 248
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=67.34 E-value=38 Score=36.89 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=16.9
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-+++-..|+|||..+-.+....
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3567888999999998876444
No 249
>PRK04132 replication factor C small subunit; Provisional
Probab=67.29 E-value=23 Score=40.37 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=29.0
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc----ccccEEEEeCCCCCCCHHHHHH
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL----HLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
++..||+||+|.+. .....++..+ ....+++|+.++...=+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt---~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALT---QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCC---HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 46799999999993 2333344333 3566888888776554333333
No 250
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=67.09 E-value=5.9 Score=40.89 Aligned_cols=43 Identities=35% Similarity=0.583 Sum_probs=35.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHhhhCCCCC-----CChHHHHHHhcC
Q psy14708 374 LEHRVLLSGTPLQNNVNELFSLLNFLEPQQF-----SNNEAFMSEFGQ 416 (513)
Q Consensus 374 a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~-----~~~~~f~~~~~~ 416 (513)
.++..++||||+.|.+.+.+++-++|.++.+ ..++.|...|+.
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast~g~ 520 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWASTFGD 520 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHHHHHH
Confidence 4567899999999999999999999999743 346777777754
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=66.61 E-value=17 Score=38.41 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=17.9
Q ss_pred cccccccCCCCchhhHHHHHHhhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~ 93 (513)
+.+|.-+.|+|||..+-++.....
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356778899999988887665443
No 252
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=66.22 E-value=69 Score=35.68 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=17.1
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-|+.-..|+|||..+.+++..+
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4677788999999988876544
No 253
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=65.63 E-value=27 Score=39.27 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=24.3
Q ss_pred cccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCH
Q psy14708 344 DFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNV 389 (513)
Q Consensus 344 ~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~ 389 (513)
+.++++.|+||+-.+-- -.++-.+.+|| |...+.
T Consensus 198 qr~~~faIvDEvDSILI-----------DEARtPLiISG-~~~~~~ 231 (822)
T COG0653 198 QRGLNFAIVDEVDSILI-----------DEARTPLIISG-PAEDSS 231 (822)
T ss_pred hccCCeEEEcchhheee-----------eccccceeeec-ccccCc
Confidence 33678899999865411 14677789999 888873
No 254
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=65.38 E-value=4.6 Score=39.81 Aligned_cols=45 Identities=31% Similarity=0.299 Sum_probs=29.6
Q ss_pred hhhccccccEEEEcccccc-CCcchhHHHH---Hhhccc--ccEEEEeCCC
Q psy14708 340 LELKDFNWRLCIIDEAHRL-KNRNCKLLEG---LRLLHL--EHRVLLSGTP 384 (513)
Q Consensus 340 ~~l~~~~~~~vIvDEaH~~-kn~~s~~~~a---l~~l~a--~~r~~LTGTP 384 (513)
..+..++..++||||.|++ .+....+... ++.|.. +--+++.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4577888999999999996 4444444433 344422 3346778887
No 255
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.75 E-value=39 Score=36.99 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.8
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
++.-.-|+|||..+..++..+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 566788999999998887554
No 256
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=64.15 E-value=29 Score=36.76 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=17.6
Q ss_pred cccccCCCCchhhHHHHHHhhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~ 93 (513)
+|+-+.|.|||..++.++....
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a 119 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLA 119 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 6778899999999988765543
No 257
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=63.96 E-value=28 Score=32.73 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.0
Q ss_pred ccccccCCCCchhhHHHHHHh
Q psy14708 71 CILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 71 giLademGlGKT~~~iali~~ 91 (513)
-+|.-+.|.|||..+-++...
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567778888999888776543
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=63.79 E-value=72 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=22.6
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
.+++-..|.|||.++..++..+.+.+ .++++|+
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~ 130 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVA 130 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEec
Confidence 45667899999999988876655432 3444443
No 259
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=63.51 E-value=36 Score=33.65 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.2
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
.++.-+.|.|||..+-++....
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4788889999999888776443
No 260
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=63.38 E-value=48 Score=33.38 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=29.9
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~ 93 (513)
.++|+|.....-|... + + +.-+=++.-..|+|||..|.+++..+.
T Consensus 3 ~~yPWl~~~~~~~~~~---~------------r----~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR---G------------R----HPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHC---C------------C----cceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 3688888887766531 1 1 112234667789999999999876654
No 261
>PF13173 AAA_14: AAA domain
Probab=62.82 E-value=7.3 Score=33.10 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=23.9
Q ss_pred ccEEEEccccccCCcchhHHHHHhhc---ccccEEEEeCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLL---HLEHRVLLSGTPL 385 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l---~a~~r~~LTGTP~ 385 (513)
-..||+||+|++.+- ...+..+ ..+..+++||.-.
T Consensus 62 ~~~i~iDEiq~~~~~----~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDW----EDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CcEEEEehhhhhccH----HHHHHHHHHhccCceEEEEccch
Confidence 468999999999643 3333333 2356899999754
No 262
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=62.73 E-value=48 Score=36.39 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=17.5
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
-|+.-.-|+|||..+..++..+.
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 45666789999999988875543
No 263
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.25 E-value=30 Score=36.85 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=19.8
Q ss_pred hchhhhccccccEEEEccccccCCc
Q psy14708 337 SDCLELKDFNWRLCIIDEAHRLKNR 361 (513)
Q Consensus 337 ~~~~~l~~~~~~~vIvDEaH~~kn~ 361 (513)
.+.......+..++|+||+|..++.
T Consensus 114 ~~~~~~dG~~~~~~i~DE~h~~~~~ 138 (477)
T PF03354_consen 114 SDADSLDGLNPSLAIFDELHAHKDD 138 (477)
T ss_pred cCCCCccCCCCceEEEeCCCCCCCH
Confidence 3455577778999999999999753
No 264
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.45 E-value=15 Score=38.39 Aligned_cols=19 Identities=32% Similarity=0.273 Sum_probs=15.2
Q ss_pred ccccccCCCCchhhHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 71 giLademGlGKT~~~iali 89 (513)
.+|.-+.|+|||..+-++.
T Consensus 39 ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIA 57 (413)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677889999998887764
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=59.60 E-value=27 Score=32.86 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=19.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGI 97 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~ 97 (513)
-+|.-+.|+|||--.-|+.....+..+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 467888899999977776655554433
No 266
>KOG0726|consensus
Probab=59.46 E-value=4.8 Score=39.29 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=26.6
Q ss_pred ccccccCCCCcchhhhhhcccccccCCCCchhhHHHHH
Q psy14708 52 CILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 52 ~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali 89 (513)
--+..|||. | ..+|.||+-+.|+|||+.|-|.+
T Consensus 208 PE~YeemGi-k----pPKGVIlyG~PGTGKTLLAKAVA 240 (440)
T KOG0726|consen 208 PEYYEEMGI-K----PPKGVILYGEPGTGKTLLAKAVA 240 (440)
T ss_pred HHHHHHcCC-C----CCCeeEEeCCCCCchhHHHHHHh
Confidence 346678887 3 37899999999999999887764
No 267
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=58.44 E-value=17 Score=32.81 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=34.6
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~ 120 (513)
++.-+.|+|||..++.++....+. ..+++++.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCHHHHHHHHHHc
Confidence 467788999999999887766544 46788888776666666665554
No 268
>KOG0390|consensus
Probab=58.34 E-value=13 Score=41.54 Aligned_cols=85 Identities=25% Similarity=0.333 Sum_probs=55.5
Q ss_pred eEEecCC--CchhhHHHHHHhhcCCcEEE-----EcceeeEEecccchhhhhhhhhhhhhhhccccC----CCeEEEecC
Q psy14708 101 FLVIAPL--STIPNWQREFEAWTDLNVIV-----YHATFVVLLQTGSKFFRICLEFFVDAVFKTGIR----GPFLVIAPL 169 (513)
Q Consensus 101 ~liv~P~--~~~~~W~~E~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~LIv~P~ 169 (513)
.+++.|. .++..=++|--+|.-.++.- -.+........|..-...|..+..+.....+.. ...|||||.
T Consensus 228 ~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~ 307 (776)
T KOG0390|consen 228 HVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS 307 (776)
T ss_pred eEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH
Confidence 3566663 34444455655554322211 344566666777777777777777776665553 445899999
Q ss_pred CCccchHHHHHhhcCc
Q psy14708 170 STIPNWQREFEAWTDL 185 (513)
Q Consensus 170 sll~qW~~E~~~~~~l 185 (513)
+|+.+|++||.+|...
T Consensus 308 sLv~nWkkEF~KWl~~ 323 (776)
T KOG0390|consen 308 SLVNNWKKEFGKWLGN 323 (776)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999653
No 269
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=57.87 E-value=22 Score=40.22 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=15.4
Q ss_pred cccccccCCCCchhhHHHHHH
Q psy14708 70 NCILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~ 90 (513)
.-+|.-+.|.|||..+-++..
T Consensus 209 n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 456777888888888777653
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=57.48 E-value=29 Score=39.99 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=18.4
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
..+|--+.|.|||..+-++....
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHh
Confidence 56777899999999998876544
No 271
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=56.95 E-value=41 Score=36.56 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=26.3
Q ss_pred hccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCC
Q psy14708 342 LKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGT 383 (513)
Q Consensus 342 l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGT 383 (513)
++...|++++|||||.++...-...--+..-+..+.+.+|-|
T Consensus 295 iRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 556689999999999996543222222222255666777755
No 272
>KOG1807|consensus
Probab=56.60 E-value=16 Score=40.36 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=57.0
Q ss_pred CCccccCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh
Q psy14708 15 DWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 15 ~~~~~~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~ 94 (513)
++.....||+.-. ..|..-|..|...|+. .+-.|+--..|+|||.+++-.+..+..
T Consensus 364 ~~~n~lePp~~g~-~ildsSq~~A~qs~lt-----------------------yelsliqgppGTgkt~vtlkav~tLL~ 419 (1025)
T KOG1807|consen 364 HIVNALEPPGPGL-VILDSSQQFAKQSKLT-----------------------YELSLIQGPPGTGKTLVTLKAVDTLLL 419 (1025)
T ss_pred hhhhhcCCCCCCc-eeecHHHHHHHHHHhh-----------------------hhhheeecCCCCCceeehHHHHHHHHh
Confidence 3444555554332 4567789888888863 223778888999999999887766655
Q ss_pred cC----CCCCeEEecCC-CchhhHHHHHHh
Q psy14708 95 TG----IRGPFLVIAPL-STIPNWQREFEA 119 (513)
Q Consensus 95 ~~----~~~~~liv~P~-~~~~~W~~E~~~ 119 (513)
.. ..-|+||+|-. |.+.|.-.-+..
T Consensus 420 n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 420 NSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred cccccccccceeeeehhhHHHHHHHHHHHh
Confidence 43 35688999985 899998876654
No 273
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=56.15 E-value=74 Score=32.03 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=30.6
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~ 93 (513)
.++|+|...-.-+.....+++- .-+=++.-.-|+||+..|.+++..+.
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl----------------~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLG----------------HHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCc----------------ceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 3578777777666655544431 11133556778899999998876553
No 274
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=55.55 E-value=20 Score=41.10 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=17.4
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
+.+|--+.|.|||..+=+++...
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHH
Confidence 45777888889998887776544
No 275
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=55.54 E-value=29 Score=37.71 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=44.1
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
....|||++-...|.. .. ++--.+.-..-+|||.+++..+.......+ .++|++.|.
T Consensus 15 ~~~~Py~~eimd~~~~----~~-----------------v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P-~~~l~v~Pt~ 72 (557)
T PF05876_consen 15 TDRTPYLREIMDALSD----PS-----------------VREVVVMKSAQVGKTELLLNWIGYSIDQDP-GPMLYVQPTD 72 (557)
T ss_pred CCCChhHHHHHHhcCC----cC-----------------ccEEEEEEcchhhHhHHHHhhceEEEEeCC-CCEEEEEEcH
Confidence 5689999988766641 10 112333444456999988887766655554 899999997
Q ss_pred CchhhHHHH
Q psy14708 108 STIPNWQRE 116 (513)
Q Consensus 108 ~~~~~W~~E 116 (513)
...+.|..+
T Consensus 73 ~~a~~~~~~ 81 (557)
T PF05876_consen 73 DAAKDFSKE 81 (557)
T ss_pred HHHHHHHHH
Confidence 667777754
No 276
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=54.95 E-value=63 Score=38.04 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=25.9
Q ss_pred cEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCCCCCC
Q psy14708 348 RLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGTPLQN 387 (513)
Q Consensus 348 ~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGTP~~n 387 (513)
++|||||+..+. .......+... .+..+++|.|=|-|-
T Consensus 470 ~vlVIDEAsMv~--~~~m~~Ll~~~~~~garvVLVGD~~QL 508 (1102)
T PRK13826 470 TVFVLDEAGMVA--SRQMALFVEAVTRAGAKLVLVGDPEQL 508 (1102)
T ss_pred cEEEEECcccCC--HHHHHHHHHHHHhcCCEEEEECCHHHc
Confidence 589999999882 22333444444 467899999977543
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=54.70 E-value=1.1e+02 Score=30.89 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.3
Q ss_pred cccccccCCCCchhhHHHHHHhhhhc
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~~ 95 (513)
+-+|.-..|+|||..+.|++....+.
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35677788999999998877655443
No 278
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=54.17 E-value=97 Score=33.79 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.7
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-++.-+.|.|||..+.+++..+
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4677888999999998887554
No 279
>CHL00095 clpC Clp protease ATP binding subunit
Probab=54.14 E-value=21 Score=40.84 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=18.1
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
+-+|.-+.|.|||..+-+++...
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 56788888999999888876544
No 280
>PHA00673 acetyltransferase domain containing protein
Probab=53.47 E-value=20 Score=31.80 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=35.3
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc---ccccEEEEeCCCCCCCHH
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL---HLEHRVLLSGTPLQNNVN 390 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l---~a~~r~~LTGTP~~n~~~ 390 (513)
..+-|.||+.|+=++-++.....+... ..-.+|.+|+||..|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 357899999999877777766665544 456799999999999865
No 281
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=52.78 E-value=1.6e+02 Score=28.74 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=33.8
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc----cc-ccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL----HL-EHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l----~a-~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
+++.||+|-+=+....... ...+..+ .. ...++|++|--.+...++...++-+.+.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~-l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~ 214 (270)
T PRK06731 154 RVDYILIDTAGKNYRASET-VEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHID 214 (270)
T ss_pred CCCEEEEECCCCCcCCHHH-HHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCC
Confidence 5789999999776433222 2222222 22 3356799988777777776666655443
No 282
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=52.50 E-value=1e+02 Score=33.14 Aligned_cols=67 Identities=21% Similarity=0.140 Sum_probs=42.9
Q ss_pred hchhhhccccccEEEEccccccCCcchhHHHHHhhccc--ccE-EEE--eCCCCCCCHHHHHHHHhhhCCCC
Q psy14708 337 SDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHL--EHR-VLL--SGTPLQNNVNELFSLLNFLEPQQ 403 (513)
Q Consensus 337 ~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a--~~r-~~L--TGTP~~n~~~dl~~ll~~L~~~~ 403 (513)
.+.......+...+|+||.|..++.....+.+..++.+ +.. +.. +|-|..+-+.+-+....-+.-+.
T Consensus 175 a~~~~~Dg~~~~~~I~DEih~f~~~~~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~ 246 (546)
T COG4626 175 ADPNTVDGLNSVGAIIDELHLFGKQEDMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGK 246 (546)
T ss_pred cCCCcccCCCcceEEEehhhhhcCHHHHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCC
Confidence 34445677788999999999998875455555566633 233 333 35566666777776666554443
No 283
>KOG0344|consensus
Probab=52.12 E-value=12 Score=39.94 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=24.9
Q ss_pred cCCcEEEecHHHHHhchhh----hccccccEEEEccccccCCc
Q psy14708 323 YKFHVLITTFEIIISDCLE----LKDFNWRLCIIDEAHRLKNR 361 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~----l~~~~~~~vIvDEaH~~kn~ 361 (513)
..+++.+.|.-.+...... +.-.....+|+||+..+..+
T Consensus 261 ~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 261 EKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred HHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 4556777777766654332 22223445899999999877
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.00 E-value=3e+02 Score=29.83 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=28.9
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc----ccccEEEEeCCCCCCCHHHHHHHHh
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL----HLEHRVLLSGTPLQNNVNELFSLLN 397 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~ll~ 397 (513)
++++||||.+-....... ....+..+ .....+++++|+-...+.++...+.
T Consensus 428 ~~DLVLIDTaG~s~~D~~-l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRA-LAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred cCCEEEecCCCcchhhHH-HHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHHH
Confidence 478999999977533222 12122222 3456788888875455555444333
No 285
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.39 E-value=96 Score=31.88 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=32.1
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-----ccccEEEEeCCCCCCCHHHHHHHHhh
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-----HLEHRVLLSGTPLQNNVNELFSLLNF 398 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-----~a~~r~~LTGTP~~n~~~dl~~ll~~ 398 (513)
+.++|+||++=+..... .....+..+ .....++|++|--...+.+++.-+.-
T Consensus 215 ~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~ 271 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS 271 (374)
T ss_pred CCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHH
Confidence 35899999997653322 233333333 13457889999877777776554443
No 286
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=50.85 E-value=6.3 Score=45.18 Aligned_cols=89 Identities=43% Similarity=0.758 Sum_probs=69.4
Q ss_pred ccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCC--CCCeE
Q psy14708 25 YKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGI--RGPFL 102 (513)
Q Consensus 25 ~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~--~~~~l 102 (513)
......|+|||.+++.||.. .+.....||||||+||+|||+++|+++........ .++.+
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~------------------~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~l 394 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSE------------------LLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPAL 394 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHH------------------HHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeE
Confidence 44457899999999999972 11223446999999999999999999987555444 57999
Q ss_pred EecCCCchhhHHHHHHhhcC-Cc-EEEEcce
Q psy14708 103 VIAPLSTIPNWQREFEAWTD-LN-VIVYHAT 131 (513)
Q Consensus 103 iv~P~~~~~~W~~E~~~~~~-~~-~~~~~~~ 131 (513)
|+||.+++.+|.+|+.+|.+ .. +..+++.
T Consensus 395 iv~p~s~~~nw~~e~~k~~~~~~~~~~~~g~ 425 (866)
T COG0553 395 IVVPASLLSNWKREFEKFAPDLRLVLVYHGE 425 (866)
T ss_pred EEecHHHHHHHHHHHhhhCccccceeeeeCC
Confidence 99999999999999999986 44 4555554
No 287
>KOG0780|consensus
Probab=49.81 E-value=56 Score=33.47 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=15.8
Q ss_pred ccCCCCchhhHHHHHHhhhhcC
Q psy14708 75 DEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 75 demGlGKT~~~iali~~~~~~~ 96 (513)
-=-|.|||.++--++.++.+.+
T Consensus 108 GLqG~GKTTtc~KlA~y~kkkG 129 (483)
T KOG0780|consen 108 GLQGSGKTTTCTKLAYYYKKKG 129 (483)
T ss_pred eccCCCcceeHHHHHHHHHhcC
Confidence 3457899998877777666554
No 288
>PRK09183 transposase/IS protein; Provisional
Probab=49.55 E-value=75 Score=30.76 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=15.3
Q ss_pred ccccccCCCCchhhHHHHHHh
Q psy14708 71 CILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 71 giLademGlGKT~~~iali~~ 91 (513)
-+|.-..|.|||..+.++...
T Consensus 105 v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 445567788999998887543
No 289
>KOG1000|consensus
Probab=48.87 E-value=9 Score=40.07 Aligned_cols=84 Identities=31% Similarity=0.507 Sum_probs=64.1
Q ss_pred CCCCCCccccCC--CCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHH
Q psy14708 11 PPASDWVKLEKS--PVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTF 88 (513)
Q Consensus 11 ~~~~~~~~~~~~--p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~ial 88 (513)
.|...+.++... |... .-|.|||++||.|.++ .+++ ++||||||+|||+|||+.
T Consensus 179 ~~ea~~~~l~ev~d~kLv--s~LlPFQreGv~faL~---RgGR-------------------~llADeMGLGKTiQAlaI 234 (689)
T KOG1000|consen 179 KPEAAPSDLNEVMDPKLV--SRLLPFQREGVIFALE---RGGR-------------------ILLADEMGLGKTIQALAI 234 (689)
T ss_pred CCccCHHHHhhccCHHHH--HhhCchhhhhHHHHHh---cCCe-------------------EEEecccccchHHHHHHH
Confidence 344445555544 4443 4699999999999872 2211 578888889999999998
Q ss_pred HHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEec
Q psy14708 89 VDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAP 168 (513)
Q Consensus 89 i~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P 168 (513)
+.+... .+|.|||||
T Consensus 235 A~yyra-----------------------------------------------------------------EwplliVcP 249 (689)
T KOG1000|consen 235 ARYYRA-----------------------------------------------------------------EWPLLIVCP 249 (689)
T ss_pred HHHHhh-----------------------------------------------------------------cCcEEEEec
Confidence 765543 399999999
Q ss_pred CCCccchHHHHHhhc
Q psy14708 169 LSTIPNWQREFEAWT 183 (513)
Q Consensus 169 ~sll~qW~~E~~~~~ 183 (513)
.++.--|.+++.+|.
T Consensus 250 AsvrftWa~al~r~l 264 (689)
T KOG1000|consen 250 ASVRFTWAKALNRFL 264 (689)
T ss_pred HHHhHHHHHHHHHhc
Confidence 999999999999997
No 290
>KOG0952|consensus
Probab=48.78 E-value=35 Score=39.24 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=30.3
Q ss_pred cccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-Cchh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIP 111 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~ 111 (513)
...+....|.|||+.+--.+.......+..++++++|. .+++
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvk 987 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVK 987 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhc
Confidence 46678889999999886666666666667777777774 4443
No 291
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.75 E-value=1.3e+02 Score=33.30 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=16.7
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
=|+.-.-|.|||..|..+...+
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3466678999999998886554
No 292
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=47.72 E-value=1e+02 Score=31.14 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=32.8
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~ 93 (513)
.++|+|......+...+..++- .-+=++.-.-|+||+..|.+++..+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl----------------~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRG----------------HHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCc----------------ceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 4788888888777765554431 11234666778899999999876653
No 293
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=47.29 E-value=37 Score=39.10 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=16.1
Q ss_pred cccccccCCCCchhhHHHHHHh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~ 91 (513)
..+|--+.|.|||..+-+++..
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 3566678888999888776643
No 294
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=46.85 E-value=70 Score=32.98 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=25.4
Q ss_pred ccEEEEccccccCCcchhHHHHHhhccc---ccEEEEeCCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLLHL---EHRVLLSGTPLQ 386 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l~a---~~r~~LTGTP~~ 386 (513)
++.+++|||..+. ......++..++. ..++++|.||..
T Consensus 102 ~~~~~idEa~~~~--~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLT--FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcC--HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 4789999999983 2344444444542 235999999964
No 295
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=46.12 E-value=2.3e+02 Score=28.96 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=18.4
Q ss_pred ccccccCCCCchhhHHHHHHhhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~ 94 (513)
=++.-.-|+||+..+.+++..+.-
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhC
Confidence 346667789999999998876653
No 296
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.94 E-value=1.4e+02 Score=32.16 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.8
Q ss_pred cccccCCCCchhhHHHHHHhhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~ 93 (513)
++.-..|+|||..+.+++..+.
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 6777889999999988876553
No 297
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.76 E-value=2.2e+02 Score=31.52 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.4
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
-++.-+.|+|||..+.+++..+.
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHhc
Confidence 46778889999999999876553
No 298
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=45.73 E-value=92 Score=38.67 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=25.4
Q ss_pred ccEEEEccccccCCcchhHHHHHhhcc-cccEEEEeCCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLLH-LEHRVLLSGTPLQ 386 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l~-a~~r~~LTGTP~~ 386 (513)
-+++||||+-.+.+ ......+..+. ...+++|.|=+-|
T Consensus 1063 ~~llIVDEaSMv~~--~~m~~Ll~~~~~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1063 NTLFLLDESSMVGN--TDMARAYALIAAGGGRAVSSGDTDQ 1101 (1747)
T ss_pred CcEEEEEccccccH--HHHHHHHHhhhcCCCEEEEecchHh
Confidence 37999999999833 23444444444 3579999996544
No 299
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.11 E-value=1.7e+02 Score=29.33 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=31.7
Q ss_pred ccccEEEEccccccCCcchhHH--HHHhh-c-------ccccEEEEeCCCCCCCHHHHHHHHhhh
Q psy14708 345 FNWRLCIIDEAHRLKNRNCKLL--EGLRL-L-------HLEHRVLLSGTPLQNNVNELFSLLNFL 399 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s~~~--~al~~-l-------~a~~r~~LTGTP~~n~~~dl~~ll~~L 399 (513)
-+++.||||=+-+..+...... +.+.. + .....+++++|--++.+.+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~ 259 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV 259 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC
Confidence 3579999999988765444211 11111 1 223458899996666666554433333
No 300
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=44.17 E-value=44 Score=37.15 Aligned_cols=70 Identities=16% Similarity=0.018 Sum_probs=44.9
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+...||.|.+.+.-+......+.. +++--..|+|||+..|+.+........ .+++|.++.
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~-------------------~~iEapTGtGKTl~yL~~al~~~~~~~-~~viist~t 72 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEG-------------------LLIEAPTGTGKTLAYLLPALAYAREEG-KKVIISTRT 72 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCc-------------------EEEECCCCccHHHHHHHHHHHHHHHcC-CcEEEECCC
Confidence 367999999988777643333321 455666788999999887665554433 566666665
Q ss_pred C-chhhHHHHH
Q psy14708 108 S-TIPNWQREF 117 (513)
Q Consensus 108 ~-~~~~W~~E~ 117 (513)
+ +..|-.++.
T Consensus 73 ~~lq~q~~~~~ 83 (654)
T COG1199 73 KALQEQLLEED 83 (654)
T ss_pred HHHHHHHHHhh
Confidence 4 444555553
No 301
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=43.84 E-value=1.4e+02 Score=31.84 Aligned_cols=45 Identities=9% Similarity=-0.064 Sum_probs=33.6
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
-|.|||..-..=++.++-.++..++++-|-. .+..+.++-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 4789998766667777788889999998885 66666766666653
No 302
>KOG1969|consensus
Probab=43.76 E-value=21 Score=39.38 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=22.1
Q ss_pred cCCCCcchhhhhhcccccccCCCCchhhH
Q psy14708 57 EMGLGKTIQSLTRNCILADEMGLGKTIQS 85 (513)
Q Consensus 57 e~g~gkt~~~~~~GgiLademGlGKT~~~ 85 (513)
+|+++++-.+.-+--+|+-..|+|||..|
T Consensus 315 ~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 315 DMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred hcccCccCCCccceEEeecCCCCChhHHH
Confidence 56666655566677899999999999654
No 303
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=43.16 E-value=2.4e+02 Score=29.25 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=45.3
Q ss_pred EecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc-----ccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 329 ITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL-----HLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 329 itt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l-----~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
..+...+......+..+ |+|.||=+-+.--...... -+..+ ....-++||+|-=..++.+++..++.+...
T Consensus 266 v~~~~el~~ai~~l~~~--d~ILVDTaGrs~~D~~~i~-el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 266 VYSPKELAEAIEALRDC--DVILVDTAGRSQYDKEKIE-ELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred ecCHHHHHHHHHHhhcC--CEEEEeCCCCCccCHHHHH-HHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 34444444444445544 8899998765432222222 22222 345578999999999999999999888776
No 304
>PRK11054 helD DNA helicase IV; Provisional
Probab=43.07 E-value=22 Score=39.74 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=35.6
Q ss_pred cccccCCCCchhhHHHHHHhhhhcC--CCCCeEEecCCCchhhHHHH-HHhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAPLSTIPNWQRE-FEAWTD 122 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~--~~~~~liv~P~~~~~~W~~E-~~~~~~ 122 (513)
++--..|.|||.+.++-+..+...+ ...++|+++...-..+.-.| +....+
T Consensus 213 lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 213 LVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 3444489999999999887776554 45688999998666665544 554443
No 305
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=42.95 E-value=79 Score=31.21 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~ 95 (513)
-++.-..|.|||..+.++...+.-.
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 4566667999999999998766544
No 306
>KOG0738|consensus
Probab=42.44 E-value=19 Score=36.71 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=36.5
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhc
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT 121 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~ 121 (513)
=+|.+|.-..|+|||+.|=|+.-... ....=|.-..+...|+.|-++..
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSsstltSKwRGeSEKlv 293 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSSTLTSKWRGESEKLV 293 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechhhhhhhhccchHHHH
Confidence 45888999999999999888765542 23344555688899999877653
No 307
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=42.25 E-value=22 Score=32.20 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=18.8
Q ss_pred ccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 75 DEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 75 demGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
.-=|.|||..+..+...+.+. ..+++++
T Consensus 6 ~kGG~GKTt~a~~la~~la~~--g~~Vlli 33 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARK--GKKVLLI 33 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHT--TS-EEEE
T ss_pred CCCCccHHHHHHHHHhccccc--ccccccc
Confidence 334789999999988777663 3455543
No 308
>KOG0950|consensus
Probab=42.22 E-value=98 Score=35.39 Aligned_cols=64 Identities=20% Similarity=0.048 Sum_probs=36.8
Q ss_pred CcEEEecHHHHHhchhhhc-c---ccccEEEEccccccCCcchhH--HHHHhhc----cccc--EEEEeCCCCCCC
Q psy14708 325 FHVLITTFEIIISDCLELK-D---FNWRLCIIDEAHRLKNRNCKL--LEGLRLL----HLEH--RVLLSGTPLQNN 388 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~l~-~---~~~~~vIvDEaH~~kn~~s~~--~~al~~l----~a~~--r~~LTGTP~~n~ 388 (513)
-.+.+.|-+........+. . -...+|||||-|.+....-.. -..+..+ .... .+.||+|-..++
T Consensus 316 ~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 316 ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH
Confidence 3466777776655544332 1 235699999999985433221 1222222 2222 689999987664
No 309
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=41.89 E-value=21 Score=39.75 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=27.8
Q ss_pred cCCcEEEecHHHHHhchhhhccc----cccEEEEccccccCC
Q psy14708 323 YKFHVLITTFEIIISDCLELKDF----NWRLCIIDEAHRLKN 360 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l~~~----~~~~vIvDEaH~~kn 360 (513)
...+++++++..+..+...-... .-..||+||||++-+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 35679999999988865432222 357999999999943
No 310
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=41.84 E-value=28 Score=37.65 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=29.5
Q ss_pred ccCCCCchhhHHHHHHhh---hh-cCCCCCeEEecCCCchhhHHHHH
Q psy14708 75 DEMGLGKTIQSLTFVDAV---FK-TGIRGPFLVIAPLSTIPNWQREF 117 (513)
Q Consensus 75 demGlGKT~~~iali~~~---~~-~~~~~~~liv~P~~~~~~W~~E~ 117 (513)
-..|.|||..|+-=++++ .+ .-..+++||+.|+.++-.....+
T Consensus 233 GaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~V 279 (747)
T COG3973 233 GAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRV 279 (747)
T ss_pred cCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHh
Confidence 356999999987533333 22 33467799999998877766543
No 311
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.80 E-value=2.3e+02 Score=29.79 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=21.4
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
.+.--.|.|||.++.-++..+...+ .++++|+
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~ 135 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVC 135 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEc
Confidence 3555689999999988876655442 3555544
No 312
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=41.62 E-value=26 Score=35.73 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=24.0
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
.|+-+|+...|+|||..|+|+...+ ++.-|...+.-+
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eL---G~~~PF~~isgS 86 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKEL---GEDVPFVSISGS 86 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHC---TTTS-EEEEEGG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHh---CCCCCeeEcccc
Confidence 4567899999999999999987554 344455444443
No 313
>KOG0925|consensus
Probab=41.15 E-value=20 Score=37.57 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=37.5
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc--------ccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL--------HLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l--------~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
.|..+|+||||. .+.....+.+| ..-+.++||+|-...++..+|+-.-++...
T Consensus 159 ~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vp 219 (699)
T KOG0925|consen 159 RYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVP 219 (699)
T ss_pred cccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecC
Confidence 689999999996 33333333333 233568999999999999888877666543
No 314
>KOG1942|consensus
Probab=40.68 E-value=23 Score=34.71 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=21.7
Q ss_pred hhhhcccccccCCCCchhhHHHHHHhh
Q psy14708 66 SLTRNCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 66 ~~~~GgiLademGlGKT~~~iali~~~ 92 (513)
+-.|+.+||-.+|.|||..|+|....+
T Consensus 62 maGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 345678899999999999999876554
No 315
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=39.75 E-value=1.2e+02 Score=38.42 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=38.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+-|.++|.-++. .. -+-.+|--..|+|||.++-+++......+ .++++++|..
T Consensus 428 ~~Ls~~Q~~Av~~il~----s~-----------------~~v~ii~G~aGTGKTt~l~~l~~~~~~~G--~~V~~lAPTg 484 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFT----ST-----------------KRFIIINGFGGTGSTEIAQLLLHLASEQG--YEIQIITAGS 484 (1960)
T ss_pred CCCCHHHHHHHHHHHh----CC-----------------CCeEEEEECCCCCHHHHHHHHHHHHHhcC--CeEEEEeCCH
Confidence 4677889988876652 10 11255556678899988877766554443 5677777764
Q ss_pred chh
Q psy14708 109 TIP 111 (513)
Q Consensus 109 ~~~ 111 (513)
-..
T Consensus 485 rAA 487 (1960)
T TIGR02760 485 LSA 487 (1960)
T ss_pred HHH
Confidence 433
No 316
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=39.45 E-value=20 Score=32.54 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=20.2
Q ss_pred cccccccCCCCchhhHHHHHHhhhhc
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~~ 95 (513)
|-+|.-..|.|||..+.|++......
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 35666678889999999998766654
No 317
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=39.43 E-value=23 Score=34.43 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=19.0
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
=|.|||.+++.+...+-+. .+++|+|
T Consensus 10 GGVGKTT~~~nLA~~La~~--G~rVLlI 35 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEM--GKKVMVV 35 (274)
T ss_pred CCccHHHHHHHHHHHHHHC--CCcEEEE
Confidence 3679999999887777654 3467665
No 318
>KOG0744|consensus
Probab=38.94 E-value=2.3e+02 Score=28.52 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=21.4
Q ss_pred chhhhhhcccccccCCCCchhhHHHHHHhh
Q psy14708 63 TIQSLTRNCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 63 t~~~~~~GgiLademGlGKT~~~iali~~~ 92 (513)
++....|--+|--.+|+|||--+=|++..+
T Consensus 172 nlIt~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 172 NLITWNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred ceeeeeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 334445556677789999999888887544
No 319
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=38.66 E-value=53 Score=31.16 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=31.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFE 118 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~ 118 (513)
.++.-+.|.|||..++.++....+.+ .+++.++......+-.+.+.
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHH
Confidence 56778899999999988877654443 56777776544444444443
No 320
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.50 E-value=2e+02 Score=29.01 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=34.7
Q ss_pred ccccEEEEccccccCCcchhHHHHHhhc---------ccccEEEE--eCCCCCCCHHHHHHHHhhhC
Q psy14708 345 FNWRLCIIDEAHRLKNRNCKLLEGLRLL---------HLEHRVLL--SGTPLQNNVNELFSLLNFLE 400 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s~~~~al~~l---------~a~~r~~L--TGTP~~n~~~dl~~ll~~L~ 400 (513)
-++|+|++|=|-++.|....+. -+..+ .+++.++| =||-=+|.+...-..-..++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~-EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~ 285 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMD-ELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG 285 (340)
T ss_pred cCCCEEEEeCcccccCchhHHH-HHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC
Confidence 3689999999999987654332 23222 23444444 48888888777555444443
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=38.33 E-value=44 Score=31.92 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=31.6
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
-+|+-..|+|||..++-++...... ..+++++.-..--.+-.+.+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHH
Confidence 4778899999999999887665544 4567777654444444444433
No 322
>KOG0332|consensus
Probab=37.96 E-value=1.4e+02 Score=30.59 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=36.7
Q ss_pred cEEEecHHHHHhchhhhccc---cccEEEEccccccCCcch---hHHHHHhhcc-cccEEEEeCCC
Q psy14708 326 HVLITTFEIIISDCLELKDF---NWRLCIIDEAHRLKNRNC---KLLEGLRLLH-LEHRVLLSGTP 384 (513)
Q Consensus 326 ~vvitt~~~~~~~~~~l~~~---~~~~vIvDEaH~~kn~~s---~~~~al~~l~-a~~r~~LTGTP 384 (513)
.|++-+..++......|..+ .....++|||..+-+... ...+....+. ....++.|+|-
T Consensus 209 qIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf 274 (477)
T KOG0332|consen 209 QIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATF 274 (477)
T ss_pred heeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechh
Confidence 47777777777765543333 356789999998865442 2223334443 45577888885
No 323
>PRK10037 cell division protein; Provisional
Probab=37.57 E-value=26 Score=33.56 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=21.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
++...--|.|||.+++.+...+.+.| +++|+|
T Consensus 5 av~n~KGGvGKTT~a~nLA~~La~~G--~rVLlI 36 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSLQMLG--ENVLVI 36 (250)
T ss_pred EEecCCCCccHHHHHHHHHHHHHhcC--CcEEEE
Confidence 34444557899999998877766553 466665
No 324
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=37.56 E-value=24 Score=33.95 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=24.5
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIP 111 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~ 111 (513)
+.+.-++|.|||+..=++.....+. ....|+.|++.+.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s 91 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLS 91 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchh
Confidence 6678899999999988554443322 2333566765544
No 325
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=37.23 E-value=26 Score=33.87 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=18.0
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
=|.|||.+++-+...+-+. .+++|+|
T Consensus 9 GGVGKTT~~~nLA~~La~~--g~rVLli 34 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKL--GKRVLQI 34 (268)
T ss_pred CcCcHHHHHHHHHHHHHhC--CCeEEEE
Confidence 3679999998887666544 3456654
No 326
>PRK08116 hypothetical protein; Validated
Probab=37.20 E-value=28 Score=33.99 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=28.9
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHH
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQ 114 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~ 114 (513)
+|-+|.-+.|.|||..+.+++..+... ..+++++.-..++....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHH
Confidence 357788899999999999987777655 24454443333343333
No 327
>PRK07952 DNA replication protein DnaC; Validated
Probab=36.80 E-value=47 Score=31.89 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=30.3
Q ss_pred cccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
|-+|.-..|.|||..+.+++..+...+ ..++++ .+..|..+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG--KSVLII----TVADIMSAMKD 144 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEE----EHHHHHHHHHH
Confidence 567888899999999999887776543 444444 24555555543
No 328
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.69 E-value=51 Score=25.99 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHHHHHHHHhcCCCCC
Q psy14708 457 ELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505 (513)
Q Consensus 457 ~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~l~~LRq~c~HP~L 505 (513)
-++++|.++|+-...- .-.-.+.++.+++.|-++++||.-
T Consensus 22 ~Ls~eE~EL~ELa~~A---------Gv~~dp~VFriildLL~~nVsP~A 61 (88)
T PF12926_consen 22 VLSAEEVELYELAQLA---------GVPMDPEVFRIILDLLRLNVSPDA 61 (88)
T ss_pred ccCHHHHHHHHHHHHh---------CCCcChHHHHHHHHHHHcCCCHHH
Confidence 4688888888743211 112235688888888888888864
No 329
>KOG0341|consensus
Probab=36.45 E-value=20 Score=36.34 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCCCchhhH-HHHHHhhhhc-------CCCCCe-EEecCC-CchhhHHHHHHhhcCCcEEEEcceeeEEecccch--hhh
Q psy14708 77 MGLGKTIQS-LTFVDAVFKT-------GIRGPF-LVIAPL-STIPNWQREFEAWTDLNVIVYHATFVVLLQTGSK--FFR 144 (513)
Q Consensus 77 mGlGKT~~~-iali~~~~~~-------~~~~~~-liv~P~-~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 144 (513)
.|.|||++- +.+|+...+. ...+|. |||||+ -+..|-.+-++.|.. .....|.. ++.
T Consensus 216 TGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~-----------~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 216 TGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVA-----------ALQEAGYPELRSL 284 (610)
T ss_pred ecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHH-----------HHHhcCChhhhhh
Confidence 589999872 3333333222 233444 999998 555566665555532 01112222 244
Q ss_pred hhhhhhhhhhhccccCCCeEEEec
Q psy14708 145 ICLEFFVDAVFKTGIRGPFLVIAP 168 (513)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~LIv~P 168 (513)
.|.....-..+..-......|||.
T Consensus 285 LciGG~~v~eql~~v~~GvHivVA 308 (610)
T KOG0341|consen 285 LCIGGVPVREQLDVVRRGVHIVVA 308 (610)
T ss_pred hhhcCccHHHHHHHHhcCeeEEEc
Confidence 666666555555555556555543
No 330
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=36.32 E-value=1.2e+02 Score=34.38 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.7
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
.-+|.-+.|.|||..+-+++...
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 46777788999999887776554
No 331
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=36.21 E-value=57 Score=30.52 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=33.5
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~ 120 (513)
+++-+.|.|||..++.++....+. ..+++++.-..-..+-.+.+..+
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHc
Confidence 567789999999999887665444 46788887766666655555444
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=35.93 E-value=52 Score=31.99 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.7
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
.+++-.+|.|||.+.-+++....
T Consensus 83 ilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 83 ILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEECCCCCcHHHHHHHHHhhhC
Confidence 56888999999999988876553
No 333
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=35.34 E-value=28 Score=33.96 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=18.1
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++.+...+-+.| .++|+|
T Consensus 11 GVGKTT~a~nLA~~La~~G--~rVLli 35 (279)
T PRK13230 11 GIGKSTTVCNIAAALAESG--KKVLVV 35 (279)
T ss_pred CCcHHHHHHHHHHHHHhCC--CEEEEE
Confidence 6799999998877776553 356554
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=35.34 E-value=2e+02 Score=30.23 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=22.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
-++.--.|.|||.++.-++..+.... ..++++|+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 45667889999999988877665441 24444444
No 335
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=35.28 E-value=69 Score=34.20 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=22.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
-++.-+.|.|||..++-++....+.+ .+++++.
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s 298 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANK--ERAILFA 298 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEE
Confidence 35677899999999888876554432 3444444
No 336
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=35.15 E-value=21 Score=35.78 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.5
Q ss_pred ccEEEEccccccCCcchhHHH-HHhhcccccEEEEeCCCCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLE-GLRLLHLEHRVLLSGTPLQNN 388 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~-al~~l~a~~r~~LTGTP~~n~ 388 (513)
=-.||+||||+- ...+.+ .+..|-...+..+||.+.+=+
T Consensus 244 dAfVIlDEaQNt---T~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 244 DAFVILDEAQNT---TVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred CeEEEEeccccc---chhhhceeeeeecCCceEEEEcCccccc
Confidence 358999999982 333333 345567888999999997644
No 337
>PRK04195 replication factor C large subunit; Provisional
Probab=35.12 E-value=1.7e+02 Score=31.21 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=17.5
Q ss_pred hcccccccCCCCchhhHHHHHH
Q psy14708 69 RNCILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~ 90 (513)
+..+|.-..|+|||..+-+++.
T Consensus 40 ~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578888999999988877653
No 338
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=34.94 E-value=30 Score=33.68 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=18.9
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++.+...+.+.+ .++|+|
T Consensus 10 GVGKTT~a~nLA~~La~~G--~~Vlli 34 (275)
T TIGR01287 10 GIGKSTTTQNIAAALAEMG--KKVMIV 34 (275)
T ss_pred cCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 6799999999887777664 466654
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=34.38 E-value=50 Score=29.87 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=33.2
Q ss_pred hhhccccccEEEEccccccCCcc----hhHHHHHhhcccccEEEEeCCCCCCCHHHHH
Q psy14708 340 LELKDFNWRLCIIDEAHRLKNRN----CKLLEGLRLLHLEHRVLLSGTPLQNNVNELF 393 (513)
Q Consensus 340 ~~l~~~~~~~vIvDEaH~~kn~~----s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~ 393 (513)
..+..-.+|+||+||.-+.-+.+ ......+..-...--++|||.-....+-|+.
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 34556789999999998653322 2333444443555689999985544444333
No 340
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.21 E-value=31 Score=33.15 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=18.2
Q ss_pred ccCCCCchhhHHHHHHhhhhcCCCCCeEE
Q psy14708 75 DEMGLGKTIQSLTFVDAVFKTGIRGPFLV 103 (513)
Q Consensus 75 demGlGKT~~~iali~~~~~~~~~~~~li 103 (513)
.-=|.|||.+++-+...+...+. .++|+
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~-~kVLl 37 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGG-KKVLL 37 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcC-CcEEE
Confidence 33477999999998777653332 34443
No 341
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=34.17 E-value=40 Score=29.96 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=32.6
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEP 401 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~ 401 (513)
++|.||+|=...+. ..... +..+.....+++..+|-..+..+...++.++..
T Consensus 67 ~yD~VIiD~pp~~~---~~~~~-~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 67 ELDYLVIDMPPGTG---DEHLT-LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCEEEEeCCCCCc---HHHHH-HHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 57899999887652 11111 222234455666668888888888877777654
No 342
>KOG0740|consensus
Probab=33.79 E-value=23 Score=36.82 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=41.4
Q ss_pred hhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhc
Q psy14708 66 SLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT 121 (513)
Q Consensus 66 ~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~ 121 (513)
...+|-+|+-..|.|||+.+.|++.... ....-|.|.++...|..|-++..
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~-----atff~iSassLtsK~~Ge~eK~v 234 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESG-----ATFFNISASSLTSKYVGESEKLV 234 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhc-----ceEeeccHHHhhhhccChHHHHH
Confidence 5677889999999999999988875542 34566888999999999987765
No 343
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=33.21 E-value=34 Score=33.14 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=19.3
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
--|.|||.+++.+...+-+. .+++|+|
T Consensus 10 KGGVGKTT~~~nLA~~la~~--G~kVLli 36 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKL--GKKVLQI 36 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCeEEEE
Confidence 45779999998887776554 3466665
No 344
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.19 E-value=34 Score=33.75 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=17.6
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++.+...+-+.+ .++|+|
T Consensus 10 GVGKTTta~nLA~~La~~G--~rVLlI 34 (290)
T CHL00072 10 GIGKSTTSCNISIALARRG--KKVLQI 34 (290)
T ss_pred CCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 5799999998877766553 345543
No 345
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=33.13 E-value=58 Score=30.53 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=33.8
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~ 120 (513)
-+++-+.|.|||..++-++....+.. ..+++.+.-..-..+..++++.+
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-HHHHHHHHHTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCHHHHHHHHHHc
Confidence 45777899999999998887665541 24677777666667777777655
No 346
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=32.92 E-value=30 Score=30.66 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=19.9
Q ss_pred ccccCCCCchhhHHHHHHhhhhcC
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~ 96 (513)
.+-+.|.|||..+++++..+.+.+
T Consensus 3 ~~t~~~~GKT~va~~L~~~l~~~g 26 (166)
T TIGR00347 3 TGTDTGVGKTVASSALAAKLKKAG 26 (166)
T ss_pred ecCCCCccHHHHHHHHHHHHHHCC
Confidence 345788999999999998887765
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=32.37 E-value=50 Score=30.40 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=34.4
Q ss_pred hhhccccccEEEEccccccCCc----chhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHH
Q psy14708 340 LELKDFNWRLCIIDEAHRLKNR----NCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 340 ~~l~~~~~~~vIvDEaH~~kn~----~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll 396 (513)
..+..-.|++||+||.-..-+. .......+..-...--++|||-=....+-|+..++
T Consensus 109 ~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 109 RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 3455678999999999776442 22333344333445589999975544444443333
No 348
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=32.26 E-value=29 Score=37.07 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=49.8
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCc
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLST 109 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~ 109 (513)
..+....+++.|.+..-.. ....| ....+|.+|+-..|.|||+.+-++.... ..+.+-+-.+.+
T Consensus 249 ~~k~~l~e~v~~~~~~~e~------~~~~~-----~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l 312 (494)
T COG0464 249 EAKEELKEAIETPLKRPEL------FRKLG-----LRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSEL 312 (494)
T ss_pred HHHHHHHHHHHhHhhChHH------HHhcC-----CCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHH
Confidence 4666777888888743221 11112 2335588999999999999998876522 234444444499
Q ss_pred hhhHHHHHHhhc
Q psy14708 110 IPNWQREFEAWT 121 (513)
Q Consensus 110 ~~~W~~E~~~~~ 121 (513)
+..|..|.++-.
T Consensus 313 ~sk~vGesek~i 324 (494)
T COG0464 313 LSKWVGESEKNI 324 (494)
T ss_pred hccccchHHHHH
Confidence 999999987763
No 349
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=32.19 E-value=28 Score=35.24 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=20.9
Q ss_pred hhcccccccCCCCchhhHHHHHHhh
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~ 92 (513)
.+|-+++-..|+|||..|++....+
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHh
Confidence 5678899999999999999976554
No 350
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=31.72 E-value=32 Score=31.55 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=20.9
Q ss_pred cccccCCCCchhhHHHHHHhhhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~ 96 (513)
|.+-+.|.|||..+++++..+.+.+
T Consensus 5 I~~t~t~vGKT~vslgL~~~l~~~g 29 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARALRRRG 29 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 4667889999999999998887754
No 351
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=31.28 E-value=39 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=19.3
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
--|.|||.++..+...+.+.+ +++|+|
T Consensus 8 KGGvGKTt~~~nLA~~la~~G--~rvLli 34 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMG--KKVLQV 34 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCC--CcEEEE
Confidence 457899999988877776653 456654
No 352
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=31.10 E-value=39 Score=32.04 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=18.2
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
-=|.|||.+++.+...+.+.+ .++++|
T Consensus 9 KGGvGKTt~a~~LA~~la~~g--~~Vlli 35 (251)
T TIGR01969 9 KGGTGKTTITANLGVALAKLG--KKVLAL 35 (251)
T ss_pred CCCCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 346799999988877665543 455543
No 353
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=31.07 E-value=39 Score=32.87 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.5
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
=|.|||.+++.+...+-+. ..++|+|
T Consensus 10 GGVGKTT~a~nLA~~La~~--G~rVllv 35 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTM--GNKILLV 35 (273)
T ss_pred CCCcHHHHHHHHHHHHHhh--CCCeEEE
Confidence 3679999998887766554 3466655
No 354
>PRK13236 nitrogenase reductase; Reviewed
Probab=31.07 E-value=40 Score=33.39 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=19.0
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++.+...+.+. ..++|++
T Consensus 16 GVGKTt~a~NLA~~La~~--G~rVLli 40 (296)
T PRK13236 16 GIGKSTTSQNTLAAMAEM--GQRILIV 40 (296)
T ss_pred cCCHHHHHHHHHHHHHHC--CCcEEEE
Confidence 679999999988777665 4566665
No 355
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=30.88 E-value=41 Score=29.85 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=20.4
Q ss_pred cccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 74 ADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 74 ademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
..-=|.|||..++.+...+.+.+ .++++|
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g--~~vllv 34 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLG--YKVVLI 34 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCC--CeEEEE
Confidence 33447799999999887776553 466655
No 356
>KOG0739|consensus
Probab=30.62 E-value=1.5e+02 Score=29.39 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=69.6
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhcC---------CcEEEEcceeeEEecc
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD---------LNVIVYHATFVVLLQT 138 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~~---------~~~~~~~~~~~~~~~~ 138 (513)
-+|-+|.-..|+||+..|-|.+-.. .....-|.-+-++..|..|-++... .+...+.......+.+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA-----nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~ 240 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGS 240 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc-----CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccC
Confidence 5688899999999999887765332 2445556667899999998666532 2222222222222222
Q ss_pred cch-----hhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhcCceeEE
Q psy14708 139 GSK-----FFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 189 (513)
Q Consensus 139 ~~~-----~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~~l~~~~ 189 (513)
++. -.++.-++..-..-.......+||+...++--.-...|.+-+.-++++
T Consensus 241 r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 241 RSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred CCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 222 355666666555555666778888877776544445555544434333
No 357
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=30.58 E-value=73 Score=28.98 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=32.9
Q ss_pred hhccccccEEEEccccccCCcc----hhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHh
Q psy14708 341 ELKDFNWRLCIIDEAHRLKNRN----CKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLN 397 (513)
Q Consensus 341 ~l~~~~~~~vIvDEaH~~kn~~----s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~ 397 (513)
.+..-.||+||+||.-+.-+.+ ......+..-...--++|||--. +.+|..++.
T Consensus 110 ~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~---p~~Lie~AD 167 (178)
T PRK07414 110 VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM---PESLLAIAD 167 (178)
T ss_pred HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCC
Confidence 4556789999999997764422 23333444434555899999744 444444433
No 358
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=30.56 E-value=41 Score=32.54 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=17.7
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++.+...+-+.+ .++|+|
T Consensus 10 GvGKTT~a~nLA~~la~~G--~rvlli 34 (267)
T cd02032 10 GIGKSTTSSNLSVALAKRG--KKVLQI 34 (267)
T ss_pred CCCHHHHHHHHHHHHHHCC--CcEEEE
Confidence 6799999988877665543 456554
No 359
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.39 E-value=3e+02 Score=28.78 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=35.3
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcc-----cccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLH-----LEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~-----a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
.++.|++|.+=+..+ .......+..+. .+..++|++|--.+.+.++...+..++..
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~ 329 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIH 329 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 457899999744432 223334444442 24568899998778788777766665554
No 360
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.07 E-value=2.6e+02 Score=31.65 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-----ccccEEEEeCCCCCCCHHHHHHHHh
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-----HLEHRVLLSGTPLQNNVNELFSLLN 397 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-----~a~~r~~LTGTP~~n~~~dl~~ll~ 397 (513)
.++.||||=+-+..+... ....+..+ ..+..++|++|--...+.++...++
T Consensus 263 ~~D~VLIDTAGRs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred CCCEEEEeCCCCCccCHH-HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 347899999887654332 34444433 2345678888864444555544443
No 361
>KOG0327|consensus
Probab=29.69 E-value=96 Score=31.59 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=37.7
Q ss_pred CcEEEecHHHHHhch--hhhccccccEEEEccccccCC--cchhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 325 FHVLITTFEIIISDC--LELKDFNWRLCIIDEAHRLKN--RNCKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 325 ~~vvitt~~~~~~~~--~~l~~~~~~~vIvDEaH~~kn--~~s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..++..|.+.+.... ..+..-...+.|+||+..+.. ...+.......+. ....+++|+|-.
T Consensus 146 ~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p 211 (397)
T KOG0327|consen 146 PHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMP 211 (397)
T ss_pred ceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCc
Confidence 346666665554422 245555678999999988744 3344455555553 345688999853
No 362
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.62 E-value=42 Score=33.68 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=19.3
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.++.|+...+-+.+ .+ +|+|
T Consensus 12 GVGKTT~aaA~A~~lA~~g-~k-vLlv 36 (322)
T COG0003 12 GVGKTTIAAATAVKLAESG-KK-VLLV 36 (322)
T ss_pred cccHHHHHHHHHHHHHHcC-Cc-EEEE
Confidence 6799999999888887777 33 5555
No 363
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=29.57 E-value=65 Score=28.62 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.8
Q ss_pred cccccCCCCchhhHHHHHHhhhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~ 96 (513)
++.-.-|.||+..+.+++..+.-..
T Consensus 23 L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 23 LFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp EEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred EEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5666678999999999987765543
No 364
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=29.55 E-value=1.7e+02 Score=37.19 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=24.2
Q ss_pred ccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCCCC
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGTPL 385 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGTP~ 385 (513)
-+++||||+-.+.+. .....+... .+..+++|.|=+-
T Consensus 1113 ~~v~ivDEasMv~~~--~~~~l~~~~~~~~ak~vlvGD~~ 1150 (1960)
T TIGR02760 1113 NTLFILDESSMVSNF--QLTHATELVQKSGSRAVSLGDIA 1150 (1960)
T ss_pred ccEEEEEccccccHH--HHHHHHHhccCCCCEEEEeCChh
Confidence 469999999988322 233333333 4568999999654
No 365
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.48 E-value=42 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.402 Sum_probs=17.8
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.++..+...+.+. ..++++|
T Consensus 11 GvGKTT~~~nLA~~La~~--G~kVlli 35 (270)
T cd02040 11 GIGKSTTTQNLSAALAEM--GKKVMIV 35 (270)
T ss_pred cCCHHHHHHHHHHHHHhC--CCeEEEE
Confidence 679999998887777654 3456554
No 366
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=29.48 E-value=52 Score=31.27 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCe-EEec-CCCchhhHHHHH
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPF-LVIA-PLSTIPNWQREF 117 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~-liv~-P~~~~~~W~~E~ 117 (513)
|.|||..+++|+..+-+.| .++ ||=+ |+.-+..|.+..
T Consensus 12 GaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG--ARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCcHHHHHHhc
Confidence 7799999999988776665 333 3333 567777996543
No 367
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=29.19 E-value=60 Score=28.95 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=32.3
Q ss_pred hhccccccEEEEccccccCCcc----hhHHHHHhhcccccEEEEeCCCCCCCHHHH
Q psy14708 341 ELKDFNWRLCIIDEAHRLKNRN----CKLLEGLRLLHLEHRVLLSGTPLQNNVNEL 392 (513)
Q Consensus 341 ~l~~~~~~~vIvDEaH~~kn~~----s~~~~al~~l~a~~r~~LTGTP~~n~~~dl 392 (513)
.+....+|+||+||.-+.-+-+ ......+..-...--++|||-=....+-|+
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 3456679999999998763322 233344444455568999997554444443
No 368
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=29.18 E-value=53 Score=26.33 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=19.8
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
....=|.|||..+..+.....+. ..+++++
T Consensus 5 ~~~kgG~Gkst~~~~la~~~~~~--~~~vl~~ 34 (104)
T cd02042 5 ANQKGGVGKTTTAVNLAAALARR--GKRVLLI 34 (104)
T ss_pred EeCCCCcCHHHHHHHHHHHHHhC--CCcEEEE
Confidence 34445789999998887777653 3455544
No 369
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=29.17 E-value=48 Score=30.12 Aligned_cols=33 Identities=36% Similarity=0.312 Sum_probs=21.7
Q ss_pred cccEEEEccccccCCcchhHHHHHhh-cccccEEEEeCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRL-LHLEHRVLLSGTP 384 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~-l~a~~r~~LTGTP 384 (513)
..|.||||||=-+ -...+.+ +....++++|.|=
T Consensus 90 ~~DlliVDEAAaI------p~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAI------PLPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS-------HHHHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcC------CHHHHHHHHhhCCEEEEEeec
Confidence 3589999999766 2233444 4577788888875
No 370
>PRK10818 cell division inhibitor MinD; Provisional
Probab=28.45 E-value=45 Score=32.24 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=32.8
Q ss_pred hccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhC
Q psy14708 342 LKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLE 400 (513)
Q Consensus 342 l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~ 400 (513)
+....++.||+|=...+ +... +..+.+...+++.-+|-..++..+..++..+.
T Consensus 109 l~~~~yd~viiD~p~~~---~~~~---~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~ 161 (270)
T PRK10818 109 LKAMDFEFIVCDSPAGI---ETGA---LMALYFADEAIITTNPEVSSVRDSDRILGILA 161 (270)
T ss_pred HhhcCCCEEEEeCCCCc---cHHH---HHHHHhCCeEEEEcCCCchHHHhHHHHHHHHH
Confidence 33336899999987655 2122 22234444555557787788877777777653
No 371
>KOG0924|consensus
Probab=28.43 E-value=34 Score=37.48 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=30.7
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc----ccccEEEEeCCCCCCCHHHHHH
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL----HLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
++..||+||||.=--..-...-.++.+ +.-+.++.|||-=...++++|+
T Consensus 468 kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFg 520 (1042)
T KOG0924|consen 468 KYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFG 520 (1042)
T ss_pred heeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhC
Confidence 477999999997322222222223333 2234578899988788888877
No 372
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.39 E-value=1.1e+02 Score=28.22 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=35.7
Q ss_pred hhhccccccEEEEccccccCCcc----hhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHh
Q psy14708 340 LELKDFNWRLCIIDEAHRLKNRN----CKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLN 397 (513)
Q Consensus 340 ~~l~~~~~~~vIvDEaH~~kn~~----s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~ 397 (513)
..+.+-.|++||+||..+.-.-+ ......+..-...--+++||.-....+-|+..+..
T Consensus 116 ~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVT 177 (198)
T COG2109 116 EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVT 177 (198)
T ss_pred HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 34566689999999997753322 22223333334566899999666655555555544
No 373
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.36 E-value=42 Score=36.24 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=29.7
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHH
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQR 115 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~ 115 (513)
..|.|||+++.+||..+...|-.+-...|-..+++..-..
T Consensus 5 atgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~ 44 (812)
T COG3421 5 ATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKL 44 (812)
T ss_pred ccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHh
Confidence 4689999999999999998875554455555677765444
No 374
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=28.25 E-value=45 Score=32.95 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=19.9
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
--|.|||.+++.|...+.+. .+++|+|
T Consensus 12 KGGvGKTt~~~nLa~~la~~--g~kVLli 38 (295)
T PRK13234 12 KGGIGKSTTSQNTLAALVEM--GQKILIV 38 (295)
T ss_pred CCCccHHHHHHHHHHHHHHC--CCeEEEE
Confidence 34679999999888776665 3567776
No 375
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=28.07 E-value=48 Score=31.38 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=19.3
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEE
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLV 103 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~li 103 (513)
..--=|.|||.+++.+...+.+.+ .++|+
T Consensus 7 ~s~KGGvGKTt~a~nla~~la~~g--~~Vll 35 (246)
T TIGR03371 7 VGVKGGVGKTTLTANLASALKLLG--EPVLA 35 (246)
T ss_pred EeCCCCccHHHHHHHHHHHHHhCC--CcEEE
Confidence 334457899999998877665543 34554
No 376
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=28.05 E-value=33 Score=33.14 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=18.7
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
-=|.|||.++..|...+.+.| ++|++
T Consensus 10 KGGvGKTT~a~nLA~~La~~G---rVLli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAYSNDH---RVLVI 35 (264)
T ss_pred CCCCcHHHHHHHHhcccCCCC---EEEEE
Confidence 447799999998887666543 56654
No 377
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=27.45 E-value=54 Score=32.54 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=19.4
Q ss_pred cccccccCCCCchhhHHHHHHhhhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~ 94 (513)
+.+++-.+|.|||..+-+++.....
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4678888999999998887765544
No 378
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=27.20 E-value=47 Score=37.14 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=31.0
Q ss_pred cccccCCCCchhhHHHHHHhhhhc-C-CCCCeEEecCCC-chhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKT-G-IRGPFLVIAPLS-TIPNWQREFEAW 120 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~-~-~~~~~liv~P~~-~~~~W~~E~~~~ 120 (513)
++.-..|.|||.+.+.-++.+... + +..++|++.... ....-.+.+.+.
T Consensus 19 lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 19 LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 344558999999999888877754 3 456778877753 333333344443
No 379
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=26.92 E-value=1e+02 Score=28.88 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=28.3
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHH
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQRE 116 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E 116 (513)
+++-+.|+|||..+..++...... ..+++.+.-.....+..+.
T Consensus 24 ~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 24 AVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred EEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHH
Confidence 467789999999998876544433 3466777665444444443
No 380
>KOG0351|consensus
Probab=26.70 E-value=52 Score=38.04 Aligned_cols=82 Identities=23% Similarity=0.263 Sum_probs=55.5
Q ss_pred CCcEEEecHHHHHhchhh---hccc-c---ccEEEEccccccCCcc---hhHHHHHhhc----ccccEEEEeCCCCCCCH
Q psy14708 324 KFHVLITTFEIIISDCLE---LKDF-N---WRLCIIDEAHRLKNRN---CKLLEGLRLL----HLEHRVLLSGTPLQNNV 389 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~---l~~~-~---~~~vIvDEaH~~kn~~---s~~~~al~~l----~a~~r~~LTGTP~~n~~ 389 (513)
..+++..|.+.+...... +... . ..++||||||-..... -..++.+..+ ...-.+.||+|--..--
T Consensus 356 ~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~ 435 (941)
T KOG0351|consen 356 IIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVR 435 (941)
T ss_pred eEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHH
Confidence 556788888888775432 1221 2 5789999999874422 1233333333 34468999999998999
Q ss_pred HHHHHHHhhhCCCCCC
Q psy14708 390 NELFSLLNFLEPQQFS 405 (513)
Q Consensus 390 ~dl~~ll~~L~~~~~~ 405 (513)
.|+...|.+-++..+.
T Consensus 436 ~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 436 EDVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHHhCCCCcceec
Confidence 9999999988887553
No 381
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=26.49 E-value=24 Score=30.25 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=14.3
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
+|-+.+|+|||..+.++....
T Consensus 3 Lleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEES---HHHHHHHHHHHHHT
T ss_pred eeECCCccHHHHHHHHHHHHc
Confidence 577888999999998877554
No 382
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=25.38 E-value=1.8e+02 Score=30.58 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.7
Q ss_pred cccEEEEccccccCCcc
Q psy14708 346 NWRLCIIDEAHRLKNRN 362 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~ 362 (513)
.||+||+||..++.-..
T Consensus 260 ~~DlLI~DEvgylp~~~ 276 (449)
T TIGR02688 260 RWDVVAFDEVATLKFAK 276 (449)
T ss_pred cCCEEEEEcCCCCcCCc
Confidence 68999999999965433
No 383
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=25.27 E-value=57 Score=32.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=18.7
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
|.|||..+.|+....-+. ..++|++.
T Consensus 11 GVGKTT~aaA~A~~~A~~--G~rtLlvS 36 (305)
T PF02374_consen 11 GVGKTTVAAALALALARR--GKRTLLVS 36 (305)
T ss_dssp TSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CCCcHHHHHHHHHHHhhC--CCCeeEee
Confidence 679999998887766655 36777764
No 384
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.25 E-value=75 Score=24.37 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.3
Q ss_pred CCCCchhhHHHHHHhhhhc
Q psy14708 77 MGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~ 95 (513)
.|.|||..+..++..+.+.
T Consensus 8 ~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 8 GGVGKTTLAANLAAALAKR 26 (99)
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 3899999999988777653
No 385
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=25.21 E-value=55 Score=31.78 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=17.5
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++.+...+-+. ...++|+|
T Consensus 12 GVGKTT~a~nLA~~La~~-~G~rvLli 37 (275)
T PRK13233 12 GIGKSTTTQNTAAAMAYF-HDKKVFIH 37 (275)
T ss_pred CCcHHHHHHHHHHHHHHh-cCCeEEEe
Confidence 579999999887666532 12456665
No 386
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=25.15 E-value=71 Score=25.99 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=15.9
Q ss_pred cccCCCCchhhHHHHHHhhhhc
Q psy14708 74 ADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 74 ademGlGKT~~~iali~~~~~~ 95 (513)
+.-=|.|||.++..+.......
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~ 27 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKE 27 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhc
Confidence 3444779999998887666554
No 387
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=25.04 E-value=58 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=22.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
++...-=|.|||.+++.+...+-..| .++|+|
T Consensus 110 av~n~KGGVGKTTta~nLA~~LA~~G--~rVLlI 141 (387)
T PHA02519 110 AVMSHKGGVYKTSSAVHTAQWLALQG--HRVLLI 141 (387)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhCC--CcEEEE
Confidence 45566668999999998877665543 567665
No 388
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=24.95 E-value=69 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.5
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
++.-..|+|||..+..++..+
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 42 LFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 567788999999998876544
No 389
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=24.84 E-value=76 Score=32.33 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh
Q psy14708 35 QLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 35 Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~ 94 (513)
|.+++..+...+..++. .-+-++.-+.|+|||..+..++..+..
T Consensus 28 h~~a~~~L~~a~~~grl----------------~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKL----------------HHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCC----------------CeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 45566677666555541 112456677888999999887765543
No 390
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=24.66 E-value=49 Score=30.89 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=21.2
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGI 97 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~ 97 (513)
|.+-+.|.|||..+++++..+.+.+.
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l~~~g~ 29 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQALREAGY 29 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHcCC
Confidence 45567889999999999988877753
No 391
>PF12846 AAA_10: AAA-like domain
Probab=24.32 E-value=93 Score=30.12 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=29.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQR 115 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~ 115 (513)
.++.-.+|.|||..+..++......+ ..++|+=|..-...|.+
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~g~~~~~~~ 46 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPKGDYSPLAR 46 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCCchHHHHHH
Confidence 45667789999999887776666665 56666655544444443
No 392
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.06 E-value=3.3e+02 Score=28.57 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=35.9
Q ss_pred ccccEEEEccccccCCcchhHHHHHhhc--------ccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 345 FNWRLCIIDEAHRLKNRNCKLLEGLRLL--------HLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s~~~~al~~l--------~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
-+++.||||=+-+..... .....+..+ .....++|++|--++...++......+++.
T Consensus 298 ~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~ 362 (432)
T PRK12724 298 DGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred CCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCC
Confidence 467899999876653322 233333322 224568899998877777777766666554
No 393
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=23.88 E-value=71 Score=30.33 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=25.0
Q ss_pred ccccccCCCCchhhHHHHHHhhh----------hcCCCCCeEEecC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF----------KTGIRGPFLVIAP 106 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~----------~~~~~~~~liv~P 106 (513)
++|+-.-|+|||..++-+++..- ......++++++-
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 77888999999999988765432 1123456676663
No 394
>PHA02518 ParA-like protein; Provisional
Probab=23.77 E-value=72 Score=29.25 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEe--cCCCchhhHHH
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVI--APLSTIPNWQR 115 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv--~P~~~~~~W~~ 115 (513)
=|.|||..++.+...+.+.+ .++++| -|..-...|..
T Consensus 10 GGvGKTT~a~~la~~la~~g--~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADG--HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCCChHHHHH
Confidence 36799999999887766554 456554 35555566753
No 395
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=23.55 E-value=55 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=20.6
Q ss_pred cccccCCCCchhhHHHHHHhhhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~ 96 (513)
|-+-+.|.|||..+++++..+.+.+
T Consensus 7 It~t~t~vGKT~vt~~L~~~l~~~g 31 (231)
T PRK12374 7 ITGTDTSVGKTVVSRALLQALASQG 31 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3455789999999999998887765
No 396
>PF05729 NACHT: NACHT domain
Probab=23.49 E-value=82 Score=27.22 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=19.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGI 97 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~ 97 (513)
.+|.-+.|.|||..+-.++........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 356677899999998887766655543
No 397
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=23.44 E-value=61 Score=33.49 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=27.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe-c--CCCchhhH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI-A--PLSTIPNW 113 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv-~--P~~~~~~W 113 (513)
+|...-=|.|||.+++.+...+-..| .++|+| + |..-+..|
T Consensus 110 ai~n~KGGVGKTT~a~nLA~~LA~~G--~rVLlID~~DpQ~nlt~~ 153 (388)
T PRK13705 110 GVAAHKGGVYKTSVSVHLAQDLALKG--LRVLLVEGNDPQGTASMY 153 (388)
T ss_pred EEECCCCCchHHHHHHHHHHHHHhcC--CCeEEEcCCCCCCchhhh
Confidence 45556668999999998887765543 577766 3 54333333
No 398
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=23.35 E-value=59 Score=29.11 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=15.1
Q ss_pred ccccCCCCchhhHHHHHHhh
Q psy14708 73 LADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 73 LademGlGKT~~~iali~~~ 92 (513)
.+---|.|||..+..+...+
T Consensus 5 ~s~kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 5 ISGKGGTGKTTVTAALAALL 24 (179)
T ss_pred EcCCCCCCHHHHHHHHHHHH
Confidence 34445789999999887666
No 399
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=23.20 E-value=82 Score=34.03 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.0
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
++.-+.|.|||..+.+++..+
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 577788999999998887554
No 400
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=23.16 E-value=69 Score=28.97 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=28.7
Q ss_pred hhccccccEEEEccccccCCcc----hhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhh
Q psy14708 341 ELKDFNWRLCIIDEAHRLKNRN----CKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNF 398 (513)
Q Consensus 341 ~l~~~~~~~vIvDEaH~~kn~~----s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~ 398 (513)
.+..-.||+||+||.-+.-+.+ ......+..-...--++|||--. +.+|..++.+
T Consensus 91 ~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~---~~~l~e~ADl 149 (172)
T PF02572_consen 91 AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA---PEELIEAADL 149 (172)
T ss_dssp HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SE
T ss_pred HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC---CHHHHHhCCe
Confidence 3556689999999997753322 22333344335566899999755 4445444444
No 401
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=23.11 E-value=41 Score=34.49 Aligned_cols=50 Identities=12% Similarity=-0.047 Sum_probs=36.8
Q ss_pred hhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhh
Q psy14708 66 SLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120 (513)
Q Consensus 66 ~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~ 120 (513)
...+|..|.-..|.|||+++=+++..+ ..+++++-...+...|..|=++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsEk~ 195 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPGKL 195 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHHHH
Confidence 345677888899999999998876554 23456666678888898875443
No 402
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=22.87 E-value=99 Score=28.47 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=22.6
Q ss_pred cEEEEccccccC-Cc--chhHHHHHhhc------ccccEEEEeCCC
Q psy14708 348 RLCIIDEAHRLK-NR--NCKLLEGLRLL------HLEHRVLLSGTP 384 (513)
Q Consensus 348 ~~vIvDEaH~~k-n~--~s~~~~al~~l------~a~~r~~LTGTP 384 (513)
-.||+||+|++. +. .......+..+ .....++++|+.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 478899999998 22 23333344333 234567788876
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=22.77 E-value=83 Score=27.98 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.1
Q ss_pred cccccCCCCchhhHHHHHHhhhhc
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKT 95 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~ 95 (513)
++.-..|.|||..+..++......
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 455678999999998887665544
No 404
>KOG0731|consensus
Probab=22.68 E-value=45 Score=37.36 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.6
Q ss_pred hhhhcccccccCCCCchhhHHHHH
Q psy14708 66 SLTRNCILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 66 ~~~~GgiLademGlGKT~~~iali 89 (513)
.+.+|.+|.-..|+|||+-|-|.+
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHh
Confidence 578999999999999999988875
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=22.67 E-value=73 Score=27.46 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=16.4
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-+|.-++|.|||.-+=+++..+
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 3467788999998887776554
No 406
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=22.64 E-value=1.3e+02 Score=26.98 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=33.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc--------CCCCCeEEecCCCchhhHHHHHHhhc
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT--------GIRGPFLVIAPLSTIPNWQREFEAWT 121 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~--------~~~~~~liv~P~~~~~~W~~E~~~~~ 121 (513)
++++-..|.|||..++.++...... ....++|++....-..+..+.+....
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 6688888999999999887766531 14568888887766666666665543
No 407
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=22.23 E-value=69 Score=31.70 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=18.3
Q ss_pred CCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 77 MGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 77 mGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
=|.|||.+++.+...+-+. ..++|+|
T Consensus 9 GGvGKTT~a~nLA~~La~~--g~rVLlI 34 (296)
T TIGR02016 9 GGSGKSFTTTNLSHMMAEM--GKRVLQL 34 (296)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEE
Confidence 3679999999887776654 3455543
No 408
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=22.16 E-value=71 Score=33.23 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=22.5
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
+|...-=|.|||.+++.+...+-..| .++|+|
T Consensus 125 av~n~KGGvGKTTta~nLA~~LA~~G--~rVLlI 156 (405)
T PRK13869 125 AVTNFKGGSGKTTTSAHLAQYLALQG--YRVLAV 156 (405)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcC--CceEEE
Confidence 45555668999999998877665543 566654
No 409
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=22.04 E-value=9.2e+02 Score=25.21 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=13.3
Q ss_pred cccccccCCCCchhhHHHH
Q psy14708 70 NCILADEMGLGKTIQSLTF 88 (513)
Q Consensus 70 GgiLademGlGKT~~~ial 88 (513)
..++.-|.|+|||..|-++
T Consensus 163 ~vli~Ge~GtGK~~lA~~i 181 (469)
T PRK10923 163 SVLINGESGTGKELVAHAL 181 (469)
T ss_pred eEEEEeCCCCcHHHHHHHH
Confidence 3567778889999765543
No 410
>KOG0333|consensus
Probab=21.89 E-value=3.2e+02 Score=29.36 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~k 359 (513)
..++++.|...+..... +|..-+-..||+|||.++-
T Consensus 372 gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi 409 (673)
T KOG0333|consen 372 GCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409 (673)
T ss_pred cceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh
Confidence 34588888877766432 3444456689999999873
No 411
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.86 E-value=71 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=22.9
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
++...-=|.|||.+++.+...+...+ .++|+|
T Consensus 108 ~v~n~KGGvGKTT~a~nLA~~La~~G--~rVLlI 139 (387)
T TIGR03453 108 AVTNFKGGSGKTTTAAHLAQYLALRG--YRVLAI 139 (387)
T ss_pred EEEccCCCcCHHHHHHHHHHHHHhcC--CCEEEE
Confidence 55566778999999999887665543 466554
No 412
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=21.69 E-value=73 Score=30.31 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=28.6
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLE 400 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~ 400 (513)
.++.||+|=...+. .....+ +.+...+++--||-..++.++..++.++.
T Consensus 111 ~~D~viiD~p~~~~---~~~~~~---l~~aD~viiv~~~~~~s~~~~~~~~~~l~ 159 (261)
T TIGR01968 111 EFDYVIIDCPAGIE---SGFRNA---VAPADEAIVVTTPEVSAVRDADRVIGLLE 159 (261)
T ss_pred hCCEEEEeCCCCcC---HHHHHH---HHhCCeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 58999999665441 222222 22334455556776677777766666553
No 413
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=21.52 E-value=85 Score=20.95 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHHHhh
Q psy14708 457 ELTNIQKKYYRGILERNFS 475 (513)
Q Consensus 457 ~ls~~q~~~Y~~l~~~~~~ 475 (513)
.|.|.|+.+|.++..++..
T Consensus 17 ~L~~~Qk~ly~dvm~Eny~ 35 (41)
T PF01352_consen 17 LLDPAQKNLYRDVMLENYR 35 (41)
T ss_dssp TS-HHHHHHHHHHHHHTTT
T ss_pred cccceecccchhHHHHhhc
Confidence 5789999999998776544
No 414
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=21.37 E-value=48 Score=29.74 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=26.3
Q ss_pred ccEEEEccccccCCcchhHHHHHhhccc-------c-cEEEEeCCCCCCCHHHHHHHH
Q psy14708 347 WRLCIIDEAHRLKNRNCKLLEGLRLLHL-------E-HRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~~s~~~~al~~l~a-------~-~r~~LTGTP~~n~~~dl~~ll 396 (513)
-+.||+|--...+....+....+..++. . +-++|+--.-. ...+++.+.
T Consensus 55 ~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~-~~~~i~~it 111 (168)
T PF08303_consen 55 HPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDD-DLDEIRRIT 111 (168)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCC-CHHHHHHHH
Confidence 4577777665555555555555555544 2 23455544433 556665544
No 415
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=21.24 E-value=69 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.1
Q ss_pred cccccCCCCchhhHHHHHHhhhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~ 96 (513)
+|+-..|.|||..+|.-.......|
T Consensus 9 flG~apGVGKTy~ML~ea~~l~~~G 33 (211)
T PF02702_consen 9 FLGAAPGVGKTYAMLQEAHRLKEQG 33 (211)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEecCCCCCHHHHHHHHHHHHHHCC
Confidence 5777889999999998877666664
No 416
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.12 E-value=66 Score=32.05 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.7
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~ 96 (513)
.|-+|.-.+|.|||..+.|++..+...+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3566777899999999999887766443
No 417
>PRK00901 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=20.95 E-value=1e+02 Score=27.41 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=19.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
+=||...|..|..-+++-+.. .+|+.|++|+|
T Consensus 94 ~~lA~~~g~p~a~RAVg~A~~------~NP~~iiIPCH 125 (155)
T PRK00901 94 KEIAVNIGNPKACRAVGLANN------KNPIPIFIPCH 125 (155)
T ss_pred HHHHHHHCCCchHHHHHHHHH------hCCCCCccCCc
Confidence 445566666665555554332 35777888875
No 418
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=20.91 E-value=1.5e+02 Score=28.07 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=30.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFE 118 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~ 118 (513)
-+++-+.|.|||..++-++....+. ..+++++.-.-...+-.+.+.
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHH
Confidence 4567889999999998887665443 456777765444444444343
No 419
>KOG0737|consensus
Probab=20.78 E-value=1.1e+02 Score=31.20 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=34.5
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhhc
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT 121 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~~ 121 (513)
.++|-+|...+|+|||+.|-|..-.. ..+..=|-=..+...|..|-++..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccchhhHHHHHHHH
Confidence 47889999999999999888865332 112222223466679999987765
No 420
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=20.76 E-value=86 Score=31.50 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.2
Q ss_pred ccccccCCCCchhhHHHHHHhhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~ 93 (513)
-+++-.+|.|||...-+++....
T Consensus 147 ilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 147 IVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56888899999999888776553
No 421
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.70 E-value=96 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.5
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
++.-..|.|||..+..++..+
T Consensus 42 Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 42 LFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 566778899999998886554
No 422
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.61 E-value=1.2e+02 Score=34.78 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=16.4
Q ss_pred cccccCCCCchhhHHHHHHhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~ 92 (513)
|+.-..|+|||..+..+...+
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 567778899999998876544
No 423
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=20.39 E-value=1.5e+02 Score=28.40 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=33.2
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
-++.-.+|.|||+-++-++....+. ..+++.|.-...-..-.+.+..
T Consensus 26 ~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 26 VLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHHH
Confidence 3566788999999999988777666 5778888765554444444443
No 424
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=20.30 E-value=1.6e+02 Score=27.74 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=32.8
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~ 120 (513)
.++.-+.|.|||.-+..++...... ..+++.+.=..-..+..+.+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHC
Confidence 4566789999999999987665443 45677666655555555555544
No 425
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=20.21 E-value=91 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=21.5
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
+.-..|.|||.++..++..........++.+|.
T Consensus 199 ~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 199 LVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 445689999999988877665442224555544
No 426
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=20.19 E-value=8.8e+02 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=28.5
Q ss_pred cEEEEccccccCCcchhHHHHHhhcc--------------cccEEEEeCCCC------CCCH-HHHHHHHhh
Q psy14708 348 RLCIIDEAHRLKNRNCKLLEGLRLLH--------------LEHRVLLSGTPL------QNNV-NELFSLLNF 398 (513)
Q Consensus 348 ~~vIvDEaH~~kn~~s~~~~al~~l~--------------a~~r~~LTGTP~------~n~~-~dl~~ll~~ 398 (513)
..+++||.+.+ +...+.+.+.-+. .+.|++.|.+.- .+.+ .|||..++.
T Consensus 95 GtL~Ldei~~L--~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~ 164 (329)
T TIGR02974 95 GTLFLDELATA--SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAF 164 (329)
T ss_pred CEEEeCChHhC--CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcc
Confidence 57999999998 3334444444332 233665555532 3455 678877754
No 427
>KOG2383|consensus
Probab=20.14 E-value=97 Score=31.99 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.0
Q ss_pred hhhcccccccCCCCchhhHHHH
Q psy14708 67 LTRNCILADEMGLGKTIQSLTF 88 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~ial 88 (513)
..+|-.|.-++|.|||+.+=-+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlF 134 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLF 134 (467)
T ss_pred CCceEEEecccCcchhHHHHHH
Confidence 3889999999999999865433
No 428
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=20.12 E-value=96 Score=29.96 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=23.4
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
-+++-+.|+|||..++-++...... ..+++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis 71 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR--GNPVLFVT 71 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 4567889999999999887654433 34666655
Done!