Query psy14708
Match_columns 513
No_of_seqs 218 out of 1740
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:35:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.2E-45 1.1E-49 409.4 21.2 308 15-509 221-529 (800)
2 1z3i_X Similar to RAD54-like; 100.0 3E-43 1E-47 384.3 19.0 183 324-507 170-367 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3.7E-41 1.3E-45 358.4 21.6 185 323-508 127-316 (500)
4 3dmq_A RNA polymerase-associat 99.9 1.8E-27 6.3E-32 270.0 9.3 146 323-469 247-451 (968)
5 1wp9_A ATP-dependent RNA helic 99.8 6.3E-18 2.1E-22 177.2 21.7 122 324-446 101-238 (494)
6 2fwr_A DNA repair protein RAD2 99.7 4E-18 1.4E-22 179.4 10.8 118 325-477 172-290 (472)
7 1rif_A DAR protein, DNA helica 99.7 1.3E-16 4.5E-21 156.3 11.6 75 323-401 203-278 (282)
8 2fz4_A DNA repair protein RAD2 99.6 1.2E-15 4E-20 145.6 13.8 62 325-389 172-233 (237)
9 3h1t_A Type I site-specific re 99.6 9.4E-16 3.2E-20 165.9 10.5 73 324-396 274-353 (590)
10 3tbk_A RIG-I helicase domain; 99.6 2.4E-14 8.3E-19 153.0 15.0 78 324-401 102-198 (555)
11 2oca_A DAR protein, ATP-depend 99.5 1.3E-14 4.6E-19 154.0 12.1 75 324-402 204-279 (510)
12 4a2p_A RIG-I, retinoic acid in 99.5 2.6E-14 9E-19 153.0 12.4 70 29-121 6-79 (556)
13 4a2q_A RIG-I, retinoic acid in 99.5 5.2E-14 1.8E-18 157.4 13.4 71 28-121 246-320 (797)
14 4a2w_A RIG-I, retinoic acid in 99.5 3.4E-14 1.2E-18 161.0 11.8 71 28-121 246-320 (936)
15 2ykg_A Probable ATP-dependent 99.5 9.8E-14 3.3E-18 153.0 14.5 78 324-401 111-207 (696)
16 4gl2_A Interferon-induced heli 99.5 8E-14 2.7E-18 153.7 10.5 70 29-121 6-81 (699)
17 3b6e_A Interferon-induced heli 99.4 3.3E-13 1.1E-17 126.0 8.3 71 28-121 31-107 (216)
18 1hv8_A Putative ATP-dependent 99.4 2.9E-12 9.9E-17 129.3 12.3 71 29-121 27-98 (367)
19 1t6n_A Probable ATP-dependent 99.4 4.5E-12 1.5E-16 119.0 12.5 92 7-121 7-106 (220)
20 2gxq_A Heat resistant RNA depe 99.3 1E-11 3.5E-16 115.2 13.0 62 324-385 120-186 (207)
21 2oxc_A Probable ATP-dependent 99.3 1.4E-11 4.8E-16 116.6 13.1 69 30-121 46-116 (230)
22 2pl3_A Probable ATP-dependent 99.3 1.2E-11 4.1E-16 117.4 12.4 62 324-385 146-213 (236)
23 1xti_A Probable ATP-dependent 99.3 2.7E-11 9.2E-16 123.5 15.0 85 14-121 8-100 (391)
24 1qde_A EIF4A, translation init 99.3 2.3E-11 7.8E-16 114.4 13.1 89 10-121 10-106 (224)
25 1wrb_A DJVLGB; RNA helicase, D 99.3 4.7E-11 1.6E-15 114.6 15.5 62 324-385 150-220 (253)
26 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 1E-11 3.5E-16 140.5 11.6 84 29-121 270-354 (1038)
27 1fuu_A Yeast initiation factor 99.3 1.3E-11 4.5E-16 125.9 11.2 70 29-121 42-113 (394)
28 1vec_A ATP-dependent RNA helic 99.3 3.6E-11 1.2E-15 111.4 13.0 70 29-121 24-95 (206)
29 2j0s_A ATP-dependent RNA helic 99.2 3.4E-11 1.2E-15 123.8 12.6 69 30-121 59-129 (410)
30 2z0m_A 337AA long hypothetical 99.2 3.1E-11 1.1E-15 120.3 11.8 65 29-121 15-80 (337)
31 1q0u_A Bstdead; DEAD protein, 99.2 4E-11 1.4E-15 112.5 11.6 70 29-121 25-96 (219)
32 1s2m_A Putative ATP-dependent 99.2 8.3E-11 2.8E-15 120.4 14.0 69 30-121 43-113 (400)
33 3ber_A Probable ATP-dependent 99.2 8.4E-11 2.9E-15 112.7 12.5 63 324-386 161-229 (249)
34 3bor_A Human initiation factor 99.2 8.7E-11 3E-15 111.6 11.1 69 30-121 52-122 (237)
35 3eiq_A Eukaryotic initiation f 99.2 1.2E-10 4E-15 119.7 12.7 70 29-121 61-132 (414)
36 3pey_A ATP-dependent RNA helic 99.1 1.9E-10 6.5E-15 117.1 12.4 72 29-121 26-99 (395)
37 3iuy_A Probable ATP-dependent 99.1 5.2E-10 1.8E-14 105.4 13.1 62 324-385 143-209 (228)
38 3oiy_A Reverse gyrase helicase 99.1 4.2E-10 1.4E-14 115.9 12.3 66 325-390 118-209 (414)
39 2eyq_A TRCF, transcription-rep 99.1 6.8E-10 2.3E-14 127.9 14.9 62 324-391 706-768 (1151)
40 3dkp_A Probable ATP-dependent 99.1 6.2E-10 2.1E-14 106.1 11.6 70 29-121 50-122 (245)
41 3fht_A ATP-dependent RNA helic 99.0 1.4E-09 4.8E-14 111.4 13.0 89 12-121 23-119 (412)
42 2xgj_A ATP-dependent RNA helic 99.0 2.5E-09 8.6E-14 121.5 16.2 69 28-121 84-153 (1010)
43 3ly5_A ATP-dependent RNA helic 99.0 1.6E-09 5.5E-14 104.5 12.0 61 325-385 177-243 (262)
44 3fe2_A Probable ATP-dependent 99.0 3.1E-09 1.1E-13 101.1 12.6 61 325-385 153-218 (242)
45 2db3_A ATP-dependent RNA helic 99.0 3.5E-09 1.2E-13 109.8 13.2 62 324-385 179-247 (434)
46 1gm5_A RECG; helicase, replica 99.0 1.8E-09 6E-14 119.1 11.2 74 29-121 367-441 (780)
47 3fho_A ATP-dependent RNA helic 98.9 1.8E-09 6.1E-14 114.4 9.3 71 30-121 141-213 (508)
48 2i4i_A ATP-dependent RNA helic 98.9 6E-09 2E-13 107.0 12.5 63 324-386 151-222 (417)
49 1z5z_A Helicase of the SNF2/RA 98.9 9.7E-10 3.3E-14 106.5 4.4 76 433-508 12-87 (271)
50 3fmp_B ATP-dependent RNA helic 98.9 1.1E-08 3.8E-13 107.4 12.3 71 29-120 113-185 (479)
51 4a4z_A Antiviral helicase SKI2 98.9 2E-08 6.9E-13 114.0 15.1 70 325-396 124-198 (997)
52 1oyw_A RECQ helicase, ATP-depe 98.8 8.9E-09 3E-13 109.3 11.1 75 324-398 115-198 (523)
53 2zj8_A DNA helicase, putative 98.8 2.9E-08 9.8E-13 109.7 13.3 71 324-396 114-189 (720)
54 2p6r_A Afuhel308 helicase; pro 98.8 2.3E-08 7.8E-13 110.1 12.0 71 324-396 114-192 (702)
55 2v1x_A ATP-dependent DNA helic 98.8 2.3E-08 8E-13 107.4 11.3 76 323-398 135-224 (591)
56 2va8_A SSO2462, SKI2-type heli 98.7 5E-08 1.7E-12 107.6 13.5 71 324-396 121-195 (715)
57 3l9o_A ATP-dependent RNA helic 98.7 8.6E-08 2.9E-12 109.9 15.3 68 29-121 183-251 (1108)
58 3sqw_A ATP-dependent RNA helic 98.7 3E-08 1E-12 106.6 10.8 72 29-121 42-119 (579)
59 3i5x_A ATP-dependent RNA helic 98.7 3.2E-08 1.1E-12 106.0 9.9 71 29-120 93-169 (563)
60 3fmo_B ATP-dependent RNA helic 98.7 8.2E-08 2.8E-12 94.4 11.7 72 29-121 113-186 (300)
61 4ddu_A Reverse gyrase; topoiso 98.6 2.7E-07 9.1E-12 105.8 14.3 67 324-390 174-266 (1104)
62 1gku_B Reverse gyrase, TOP-RG; 98.3 4.6E-06 1.6E-10 95.5 13.1 61 325-387 156-228 (1054)
63 3hgt_A HDA1 complex subunit 3; 98.1 2.7E-06 9.4E-11 83.0 5.3 63 446-508 20-88 (328)
64 3llm_A ATP-dependent RNA helic 98.1 1.1E-05 3.9E-10 75.9 9.4 64 324-388 155-222 (235)
65 4f92_B U5 small nuclear ribonu 98.1 3.5E-05 1.2E-09 91.9 15.5 67 30-118 926-993 (1724)
66 2v6i_A RNA helicase; membrane, 98.0 1.7E-05 6E-10 81.8 9.4 45 71-117 5-51 (431)
67 4f92_B U5 small nuclear ribonu 97.9 0.00021 7.1E-09 85.3 17.9 70 323-394 180-262 (1724)
68 2vl7_A XPD; helicase, unknown 97.8 3.9E-05 1.3E-09 81.5 9.3 68 29-120 6-74 (540)
69 2jlq_A Serine protease subunit 97.7 7.4E-05 2.5E-09 77.5 9.4 45 71-117 22-68 (451)
70 3crv_A XPD/RAD3 related DNA he 97.7 7E-05 2.4E-09 79.8 8.2 68 29-120 2-70 (551)
71 1yks_A Genome polyprotein [con 97.7 7.1E-05 2.4E-09 77.4 7.8 47 70-118 10-58 (440)
72 2z83_A Helicase/nucleoside tri 97.6 0.00013 4.5E-09 75.8 9.6 46 71-118 24-71 (459)
73 3o8b_A HCV NS3 protease/helica 97.6 0.00021 7.3E-09 76.9 10.8 62 324-386 297-362 (666)
74 3mwy_W Chromo domain-containin 97.4 6.4E-05 2.2E-09 83.7 4.0 80 29-131 240-320 (800)
75 2wv9_A Flavivirin protease NS2 97.4 0.00034 1.2E-08 76.0 9.1 47 70-118 243-291 (673)
76 2whx_A Serine protease/ntpase/ 97.3 0.00049 1.7E-08 74.1 9.3 47 70-118 188-236 (618)
77 4a15_A XPD helicase, ATP-depen 97.2 0.00028 9.5E-09 76.1 6.2 72 30-121 3-75 (620)
78 2ipc_A Preprotein translocase 96.9 0.0029 9.8E-08 69.4 10.4 59 325-396 169-239 (997)
79 4b3f_X DNA-binding protein smu 96.5 0.02 6.7E-07 62.0 13.0 58 29-110 188-245 (646)
80 1nkt_A Preprotein translocase 96.4 0.012 4.3E-07 64.4 10.6 35 325-359 201-244 (922)
81 3upu_A ATP-dependent DNA helic 96.3 0.014 4.9E-07 60.3 10.2 64 29-111 24-87 (459)
82 2fsf_A Preprotein translocase 96.2 0.0075 2.6E-07 65.9 7.8 35 325-359 164-207 (853)
83 2xau_A PRE-mRNA-splicing facto 96.1 0.008 2.7E-07 66.4 7.6 63 324-386 185-252 (773)
84 1tf5_A Preprotein translocase 96.1 0.01 3.5E-07 64.9 8.1 34 325-358 173-215 (844)
85 3e1s_A Exodeoxyribonuclease V, 96.0 0.02 6.8E-07 60.9 9.6 60 28-112 187-246 (574)
86 3rc3_A ATP-dependent RNA helic 95.9 0.012 4.2E-07 63.7 7.8 39 345-383 238-280 (677)
87 2b8t_A Thymidine kinase; deoxy 95.4 0.096 3.3E-06 48.4 10.7 52 345-399 88-146 (223)
88 2orw_A Thymidine kinase; TMTK, 95.1 0.031 1.1E-06 50.0 6.1 35 346-383 76-111 (184)
89 2o0j_A Terminase, DNA packagin 95.0 0.25 8.6E-06 49.5 13.1 53 341-396 268-323 (385)
90 2gk6_A Regulator of nonsense t 94.8 0.12 4.1E-06 55.5 10.8 59 322-386 317-375 (624)
91 2wjy_A Regulator of nonsense t 94.4 0.19 6.4E-06 55.6 11.5 58 323-386 494-551 (800)
92 1w36_D RECD, exodeoxyribonucle 94.3 0.15 5.1E-06 54.6 10.1 40 346-387 262-301 (608)
93 2xzl_A ATP-dependent helicase 94.2 0.13 4.3E-06 57.0 9.4 58 322-386 496-553 (802)
94 2j9r_A Thymidine kinase; TK1, 94.1 0.21 7.2E-06 45.6 9.2 35 346-383 101-136 (214)
95 1xx6_A Thymidine kinase; NESG, 93.9 0.12 4.2E-06 46.4 7.1 51 346-399 81-138 (191)
96 1c4o_A DNA nucleotide excision 93.7 0.15 5E-06 55.2 8.7 78 29-129 7-86 (664)
97 3cpe_A Terminase, DNA packagin 93.4 0.64 2.2E-05 49.5 13.0 45 342-387 269-316 (592)
98 3vkw_A Replicase large subunit 93.0 0.16 5.3E-06 51.8 6.9 39 345-387 233-272 (446)
99 2orv_A Thymidine kinase; TP4A 91.6 0.39 1.3E-05 44.3 7.2 34 346-383 90-124 (234)
100 2d7d_A Uvrabc system protein B 91.4 0.44 1.5E-05 51.4 8.6 78 29-129 11-90 (661)
101 3e2i_A Thymidine kinase; Zn-bi 89.7 1.3 4.4E-05 40.4 8.7 34 346-382 101-135 (219)
102 3lfu_A DNA helicase II; SF1 he 89.5 0.38 1.3E-05 51.6 6.0 51 72-122 26-79 (647)
103 3syl_A Protein CBBX; photosynt 89.0 0.4 1.4E-05 46.1 5.2 25 70-94 69-93 (309)
104 3jux_A Protein translocase sub 88.8 2.1 7.1E-05 46.3 10.7 66 323-401 213-287 (822)
105 1a5t_A Delta prime, HOLB; zinc 88.2 3.1 0.00011 40.5 11.2 48 31-94 3-50 (334)
106 3eie_A Vacuolar protein sortin 79.9 1.9 6.5E-05 41.8 5.3 23 68-90 51-73 (322)
107 3bos_A Putative DNA replicatio 78.7 2.2 7.4E-05 38.7 5.0 22 71-92 55-76 (242)
108 1l8q_A Chromosomal replication 78.2 2.9 9.8E-05 40.4 6.0 23 70-92 39-61 (324)
109 3u61_B DNA polymerase accessor 77.1 1.7 6E-05 41.9 4.1 50 346-395 105-156 (324)
110 2z4s_A Chromosomal replication 76.9 5.7 0.00019 40.3 8.0 24 70-93 132-155 (440)
111 1rif_A DAR protein, DNA helica 73.4 1.1 3.9E-05 42.3 1.6 70 29-122 112-182 (282)
112 2qp9_X Vacuolar protein sortin 71.4 3.7 0.00013 40.4 4.8 24 68-91 84-107 (355)
113 3dmq_A RNA polymerase-associat 70.4 2.1 7E-05 48.4 3.0 84 28-194 151-234 (968)
114 2chg_A Replication factor C sm 69.5 9.5 0.00032 33.5 6.9 21 71-91 41-61 (226)
115 3h4m_A Proteasome-activating n 66.5 4 0.00014 38.4 3.7 23 68-90 51-73 (285)
116 1z63_A Helicase of the SNF2/RA 64.3 3.1 0.00011 42.8 2.6 85 29-194 36-121 (500)
117 2qby_B CDC6 homolog 3, cell di 63.2 5.9 0.0002 38.9 4.4 23 70-92 47-69 (384)
118 3vfd_A Spastin; ATPase, microt 62.8 6.2 0.00021 39.2 4.5 22 68-89 148-169 (389)
119 1iqp_A RFCS; clamp loader, ext 61.2 9.5 0.00032 36.2 5.4 21 71-91 49-69 (327)
120 2bjv_A PSP operon transcriptio 60.6 18 0.00062 33.3 7.1 20 71-90 32-51 (265)
121 3hjh_A Transcription-repair-co 58.0 9.8 0.00034 39.1 5.0 54 72-130 18-72 (483)
122 1z3i_X Similar to RAD54-like; 54.5 3.5 0.00012 44.2 1.0 95 29-194 54-150 (644)
123 4b4t_M 26S protease regulatory 53.9 7.5 0.00026 39.4 3.3 48 67-119 214-261 (434)
124 2r2a_A Uncharacterized protein 51.3 8.3 0.00029 34.4 2.8 39 347-385 88-133 (199)
125 3dm5_A SRP54, signal recogniti 51.3 49 0.0017 33.4 8.8 32 72-105 104-135 (443)
126 1ojl_A Transcriptional regulat 50.1 19 0.00064 34.3 5.4 20 71-90 28-47 (304)
127 4b4t_J 26S protease regulatory 50.1 6.1 0.00021 39.6 1.9 49 67-120 181-229 (405)
128 4b4t_L 26S protease subunit RP 47.6 6.3 0.00021 40.0 1.5 48 67-119 214-261 (437)
129 4b4t_I 26S protease regulatory 44.3 7.9 0.00027 39.1 1.6 48 67-119 215-262 (437)
130 3kl4_A SRP54, signal recogniti 42.1 86 0.0029 31.5 8.9 30 73-104 102-131 (433)
131 4b4t_K 26S protease regulatory 40.9 9 0.00031 38.7 1.4 46 67-117 205-250 (428)
132 4b4t_H 26S protease regulatory 40.8 9.1 0.00031 39.0 1.5 48 67-119 242-289 (467)
133 1w4r_A Thymidine kinase; type 40.0 17 0.0006 32.2 3.0 35 71-107 23-57 (195)
134 1qvr_A CLPB protein; coiled co 39.4 28 0.00097 38.4 5.3 23 70-92 193-215 (854)
135 1wp9_A ATP-dependent RNA helic 38.9 14 0.00046 37.0 2.5 81 29-196 8-92 (494)
136 1r6b_X CLPA protein; AAA+, N-t 36.6 83 0.0028 34.0 8.5 23 70-92 209-231 (758)
137 3cwq_A Para family chromosome 36.5 19 0.00065 32.0 2.8 29 73-104 6-34 (209)
138 1uaa_A REP helicase, protein ( 35.3 26 0.0009 37.4 4.2 51 72-122 19-72 (673)
139 3u4q_B ATP-dependent helicase/ 35.0 21 0.00072 41.0 3.5 50 73-122 6-56 (1166)
140 3kjh_A CO dehydrogenase/acetyl 34.4 14 0.00049 33.4 1.7 27 76-104 8-34 (254)
141 3t15_A Ribulose bisphosphate c 32.6 16 0.00055 34.6 1.7 43 68-115 36-78 (293)
142 4dzz_A Plasmid partitioning pr 31.9 26 0.00091 30.5 3.0 32 72-105 6-37 (206)
143 2qen_A Walker-type ATPase; unk 30.9 34 0.0012 32.5 3.8 38 347-384 129-173 (350)
144 3fwy_A Light-independent proto 30.5 27 0.00092 33.5 2.9 25 78-104 58-82 (314)
145 1w4r_A Thymidine kinase; type 30.5 38 0.0013 30.0 3.6 33 346-382 91-124 (195)
146 1xwi_A SKD1 protein; VPS4B, AA 30.4 24 0.00083 33.8 2.6 42 68-113 45-86 (322)
147 1t6n_A Probable ATP-dependent 30.1 45 0.0015 29.4 4.3 63 325-387 135-203 (220)
148 2c9o_A RUVB-like 1; hexameric 29.2 53 0.0018 33.1 5.0 45 69-116 64-108 (456)
149 3k9g_A PF-32 protein; ssgcid, 29.1 28 0.00097 32.0 2.7 31 71-104 31-61 (267)
150 1g5t_A COB(I)alamin adenosyltr 28.3 60 0.002 28.7 4.6 58 339-399 113-174 (196)
151 3ea0_A ATPase, para family; al 28.2 33 0.0011 30.8 3.0 33 71-104 8-40 (245)
152 1byi_A Dethiobiotin synthase; 28.0 38 0.0013 30.0 3.4 34 71-106 5-38 (224)
153 3anw_B GINS23, putative unchar 27.3 47 0.0016 28.7 3.5 54 422-476 113-167 (171)
154 1cp2_A CP2, nitrogenase iron p 27.3 34 0.0012 31.4 2.9 27 76-104 9-35 (269)
155 3zq6_A Putative arsenical pump 27.0 33 0.0011 32.8 2.9 34 71-106 17-50 (324)
156 2zan_A Vacuolar protein sortin 27.0 31 0.0011 34.8 2.8 45 68-116 167-211 (444)
157 2eyq_A TRCF, transcription-rep 26.8 45 0.0015 38.2 4.3 54 73-131 22-76 (1151)
158 3of5_A Dethiobiotin synthetase 26.7 28 0.00095 31.6 2.1 26 71-96 8-33 (228)
159 3ug7_A Arsenical pump-driving 26.4 34 0.0012 33.2 2.9 33 71-105 29-61 (349)
160 3end_A Light-independent proto 25.5 37 0.0013 32.0 2.9 27 76-104 49-75 (307)
161 2afh_E Nitrogenase iron protei 25.5 37 0.0013 31.6 2.9 27 76-104 10-36 (289)
162 3bh0_A DNAB-like replicative h 25.3 68 0.0023 30.5 4.8 46 71-118 71-116 (315)
163 3qxc_A Dethiobiotin synthetase 25.0 31 0.0011 31.7 2.2 26 71-96 25-50 (242)
164 3ez2_A Plasmid partition prote 24.5 37 0.0013 33.5 2.8 34 71-104 112-149 (398)
165 2r8r_A Sensor protein; KDPD, P 24.3 50 0.0017 30.0 3.3 26 71-96 9-34 (228)
166 1xti_A Probable ATP-dependent 23.9 63 0.0022 31.1 4.4 63 325-387 129-197 (391)
167 2oze_A ORF delta'; para, walke 23.7 43 0.0015 31.3 2.9 27 76-104 45-71 (298)
168 3uk6_A RUVB-like 2; hexameric 23.6 57 0.002 31.4 4.0 47 31-92 48-94 (368)
169 3fgn_A Dethiobiotin synthetase 23.1 35 0.0012 31.5 2.1 26 71-96 30-55 (251)
170 2gno_A DNA polymerase III, gam 23.0 55 0.0019 31.1 3.5 20 71-90 21-40 (305)
171 1g3q_A MIND ATPase, cell divis 22.9 51 0.0018 29.4 3.2 33 71-105 6-38 (237)
172 3iqw_A Tail-anchored protein t 22.1 47 0.0016 32.1 2.9 32 72-105 20-51 (334)
173 2fwr_A DNA repair protein RAD2 22.0 29 0.001 35.0 1.4 79 26-195 89-169 (472)
174 2w58_A DNAI, primosome compone 22.0 39 0.0013 29.4 2.1 25 70-94 56-80 (202)
175 1wcv_1 SOJ, segregation protei 21.8 34 0.0012 31.3 1.8 32 71-104 10-41 (257)
176 2woj_A ATPase GET3; tail-ancho 21.8 47 0.0016 32.3 2.9 36 72-107 22-57 (354)
177 3io3_A DEHA2D07832P; chaperone 21.7 48 0.0016 32.2 2.9 32 75-106 25-56 (348)
178 1hyq_A MIND, cell division inh 21.4 57 0.0019 29.7 3.2 33 71-105 6-38 (263)
179 1pjr_A PCRA; DNA repair, DNA r 21.4 51 0.0018 35.5 3.3 66 30-120 11-79 (724)
180 2zts_A Putative uncharacterize 20.9 81 0.0028 28.1 4.2 47 71-118 33-79 (251)
181 3io5_A Recombination and repai 20.9 56 0.0019 31.5 3.0 41 72-112 32-72 (333)
182 2fna_A Conserved hypothetical 20.8 52 0.0018 31.2 2.9 39 347-385 138-180 (357)
183 2r62_A Cell division protease 20.7 41 0.0014 30.8 2.1 24 68-91 44-67 (268)
184 2ph1_A Nucleotide-binding prot 20.4 62 0.0021 29.6 3.3 33 71-105 22-54 (262)
185 3co5_A Putative two-component 20.3 52 0.0018 26.9 2.5 19 71-89 30-48 (143)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-45 Score=409.36 Aligned_cols=308 Identities=42% Similarity=0.751 Sum_probs=234.3
Q ss_pred CCccccCCCCccCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh
Q psy14708 15 DWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 15 ~~~~~~~~p~~~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~ 94 (513)
.+..+..+|.+..+.+|||||++||.||+..+.++ +||||||+||+|||+++|+++..+..
T Consensus 221 ~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~-------------------~~~ILademGlGKT~~ai~~i~~l~~ 281 (800)
T 3mwy_W 221 RFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKG-------------------DNGILADEMGLGKTVQTVAFISWLIF 281 (800)
T ss_dssp CCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTT-------------------CCEEECCCTTSSTTHHHHHHHHHHHH
T ss_pred cccccccCCCccCCCCcCHHHHHHHHHHHHHhhcC-------------------CCEEEEeCCCcchHHHHHHHHHHHHH
Confidence 36667778888778899999999999998666543 34888999999999999999876643
Q ss_pred cCCCCCeEEecCCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccc
Q psy14708 95 TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPN 174 (513)
Q Consensus 95 ~~~~~~~liv~P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~q 174 (513)
.+ ...+|+|||||.+++.|
T Consensus 282 ~~-------------------------------------------------------------~~~~~~LIV~P~sll~q 300 (800)
T 3mwy_W 282 AR-------------------------------------------------------------RQNGPHIIVVPLSTMPA 300 (800)
T ss_dssp HH-------------------------------------------------------------SCCSCEEEECCTTTHHH
T ss_pred hc-------------------------------------------------------------CCCCCEEEEECchHHHH
Confidence 21 12356677777777777
Q ss_pred hHHHHHhhc-CceeEEEeccccchhhhhHHhHhhhhhcccccCCCCccccccCCcccchhhccccccccccchhhhhccc
Q psy14708 175 WQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANN 253 (513)
Q Consensus 175 W~~E~~~~~-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
|.+|+.+|+ ++++++|+|....+....
T Consensus 301 W~~E~~~~~p~~~v~~~~g~~~~r~~~~---------------------------------------------------- 328 (800)
T 3mwy_W 301 WLDTFEKWAPDLNCICYMGNQKSRDTIR---------------------------------------------------- 328 (800)
T ss_dssp HHHHHHHHSTTCCEEECCCSSHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHCCCceEEEEeCCHHHHHHHH----------------------------------------------------
Confidence 777777776 788888988754321111
Q ss_pred ccccCchhHHHHHHHHHhhhcCCCCCCcCCCCCCCCCCCcchhhhhhhhHhhhhhhccccccccccccccCCcEEEecHH
Q psy14708 254 EFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFE 333 (513)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvitt~~ 333 (513)
.+++..... ........++|++|||+
T Consensus 329 --------------------------------------------------~~~~~~~~~----~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 329 --------------------------------------------------EYEFYTNPR----AKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp --------------------------------------------------HHHSCSCC---------CCCCCSEEEECTT
T ss_pred --------------------------------------------------HHHhhcccc----ccccccccCCEEEecHH
Confidence 000000000 01123457899999999
Q ss_pred HHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCCCChHHHHHH
Q psy14708 334 IIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSE 413 (513)
Q Consensus 334 ~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~~~~~~f~~~ 413 (513)
.+..+...+..++|++||+||||++||.++..++++..+++.+||+|||||++|++.|||++++||.|+.|.....|.-.
T Consensus 355 ~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~ 434 (800)
T 3mwy_W 355 YILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFE 434 (800)
T ss_dssp HHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------
T ss_pred HHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876666544
Q ss_pred hcCcccHHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHHH
Q psy14708 414 FGQLKTESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTM 493 (513)
Q Consensus 414 ~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~l 493 (513)
............|+.+++++++||++.++..+||++.+.++.|+||+.|+++|+.++.+....+..+... ....+++.+
T Consensus 435 ~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~-~~~~~l~~l 513 (800)
T 3mwy_W 435 NQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKG-GHFSLLNIM 513 (800)
T ss_dssp CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----------CTHHHHH
T ss_pred ccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcccc-chhhHHHHH
Confidence 3333445567889999999999999999999999999999999999999999999998876665544332 335688999
Q ss_pred HHHHHhcCCCCCcCCC
Q psy14708 494 MELRKCCIHPYLLNGK 509 (513)
Q Consensus 494 ~~LRq~c~HP~L~~~~ 509 (513)
++||++|+||+|+.+.
T Consensus 514 ~~Lrk~~~hp~l~~~~ 529 (800)
T 3mwy_W 514 NELKKASNHPYLFDNA 529 (800)
T ss_dssp HHHHHHHHCGGGSSSH
T ss_pred HHHHHHhcChhhhcch
Confidence 9999999999998653
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-43 Score=384.34 Aligned_cols=183 Identities=29% Similarity=0.416 Sum_probs=161.5
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQ 403 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~ 403 (513)
.++|+++||+.+..+...+....|++||+||||++||..+..++++..+++.+||+|||||++|++.|+|++++||.|+.
T Consensus 170 ~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~ 249 (644)
T 1z3i_X 170 PTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGI 249 (644)
T ss_dssp SCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHH
T ss_pred CCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCc
Confidence 56899999999999988898999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhcCccc---------------HHHHHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHH
Q psy14708 404 FSNNEAFMSEFGQLKT---------------ESEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRG 468 (513)
Q Consensus 404 ~~~~~~f~~~~~~~~~---------------~~~~~~l~~~l~~~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~ 468 (513)
+++...|.+.|..+.. .....+|..++.++++||+++++..+||++.+.++.|+||+.|+++|+.
T Consensus 250 l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~ 329 (644)
T 1z3i_X 250 LGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL 329 (644)
T ss_dssp HCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHH
Confidence 9999999999864321 2346789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCCCChhHHHHHHHHHHHhcCCCCCcC
Q psy14708 469 ILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLN 507 (513)
Q Consensus 469 l~~~~~~~l~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~ 507 (513)
+.+........ ..+......+..+++|||+|+||.|+.
T Consensus 330 ~~~~~~~~~~~-~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 330 FLKQAKPVESL-QTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHCGGGSS-CTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHH-hcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 98876432211 222345678899999999999998863
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.7e-41 Score=358.40 Aligned_cols=185 Identities=29% Similarity=0.549 Sum_probs=161.3
Q ss_pred cCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 323 YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
..++|+++||+.+.++.. +....|++||+||||+++|..+..++++..+.+.++|+|||||++|++.|+|++++||.|+
T Consensus 127 ~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~ 205 (500)
T 1z63_A 127 EDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPG 205 (500)
T ss_dssp GGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTT
T ss_pred cCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 356799999999998766 7778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHhHHH--HhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhh
Q psy14708 403 QFSNNEAFMSEFGQL---KTESEVNKLQLLLKPMMLRRLKED--VEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477 (513)
Q Consensus 403 ~~~~~~~f~~~~~~~---~~~~~~~~l~~~l~~~~~rrtk~~--v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l 477 (513)
.+++...|.+.|..+ .+......|+.+++++++||++.+ +..+||++.+.++.|+|++.|+..|+.+.+.....+
T Consensus 206 ~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~ 285 (500)
T 1z63_A 206 LLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI 285 (500)
T ss_dssp TTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT
T ss_pred cCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999888653 234556789999999999999876 566899999999999999999999999998876655
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCcCC
Q psy14708 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508 (513)
Q Consensus 478 ~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~~ 508 (513)
...........++..+++|||+|+||.++.+
T Consensus 286 ~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~ 316 (500)
T 1z63_A 286 DSVTGIKRKGMILSTLLKLKQIVDHPALLKG 316 (500)
T ss_dssp TTCCTHHHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred HhhhcccchHHHHHHHHHHHHHhCCHHHhcC
Confidence 5444333456688999999999999988653
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=1.8e-27 Score=269.96 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=109.1
Q ss_pred cCCcEEEecHHHHHhch---hhhccccccEEEEccccccCCcchhH---HHHHhhc--ccccEEEEeCCCCCCCHHHHHH
Q psy14708 323 YKFHVLITTFEIIISDC---LELKDFNWRLCIIDEAHRLKNRNCKL---LEGLRLL--HLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~---~~l~~~~~~~vIvDEaH~~kn~~s~~---~~al~~l--~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
..++|+++||+.+.++. ..+...+|++||+||||+++|..+.. ++++..+ ++.++|+|||||++|+..|+|+
T Consensus 247 ~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~s 326 (968)
T 3dmq_A 247 DTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFA 326 (968)
T ss_dssp TTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHH
T ss_pred ccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHH
Confidence 45789999999998764 34667789999999999999877654 7778777 6788999999999999999999
Q ss_pred HHhhhCCCCCCChHHHHHHhcCccc---------------HHH---------------------------HHHHHHHHHH
Q psy14708 395 LLNFLEPQQFSNNEAFMSEFGQLKT---------------ESE---------------------------VNKLQLLLKP 432 (513)
Q Consensus 395 ll~~L~~~~~~~~~~f~~~~~~~~~---------------~~~---------------------------~~~l~~~l~~ 432 (513)
+++++.|..+++...|...+..... ... ......++..
T Consensus 327 ll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 406 (968)
T 3dmq_A 327 RLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSM 406 (968)
T ss_dssp HHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHH
T ss_pred HHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHH
Confidence 9999999999999888766421100 000 0011122222
Q ss_pred ---------HHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHH
Q psy14708 433 ---------MMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGI 469 (513)
Q Consensus 433 ---------~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l 469 (513)
+++|+++..+. .+|++..+.+.+++++.++..|+..
T Consensus 407 lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~ 451 (968)
T 3dmq_A 407 LMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVS 451 (968)
T ss_dssp HGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHH
T ss_pred HHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHH
Confidence 23333344443 7899999999999999999998763
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=6.3e-18 Score=177.22 Aligned_cols=122 Identities=19% Similarity=0.246 Sum_probs=80.0
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcchhHHHH--Hh-hcccccEEEEeCCCCCCCHHHHHHHHhh
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRNCKLLEG--LR-LLHLEHRVLLSGTPLQNNVNELFSLLNF 398 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~s~~~~a--l~-~l~a~~r~~LTGTP~~n~~~dl~~ll~~ 398 (513)
..+|+++||+.+..... .+...+|++||+||||++++..+....+ +. ..+..++|+|||||. ++..++..++.+
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~ 179 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINN 179 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHH
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHh
Confidence 35799999999988644 3456689999999999998754322211 11 225778999999999 778888888888
Q ss_pred hCCCCC---CChHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy14708 399 LEPQQF---SNNEAFMSEFGQ--------LKTESEVNKLQLLLKPMMLRRLKEDVEKSI 446 (513)
Q Consensus 399 L~~~~~---~~~~~f~~~~~~--------~~~~~~~~~l~~~l~~~~~rrtk~~v~~~L 446 (513)
+..... .....+...|.. .........+...+..++.++.+......+
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 875422 111111111211 112345667778888888888776655443
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.74 E-value=4e-18 Score=179.44 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=80.5
Q ss_pred CcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhhCCCCC
Q psy14708 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQF 404 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~~~ 404 (513)
.+|+++||+.+......+. -+|++||+||+|++.+.... ..+..+.+..+++|||||..++-.+
T Consensus 172 ~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 172 KPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp CSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred CCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHH-------------
Confidence 4699999999987765443 35999999999999876543 4566678889999999999754211
Q ss_pred CChHHHHHHhcCcccHHHHHHHHHHHHHHHHHHhHHHHhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHhhhh
Q psy14708 405 SNNEAFMSEFGQLKTESEVNKLQLLLKPMMLRRLKEDVEK-SIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477 (513)
Q Consensus 405 ~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~rrtk~~v~~-~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l 477 (513)
. .+..++.+.+.+....++.. -+++.....+.+++++.++..|+.+.....+.+
T Consensus 236 ---~----------------~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 236 ---E----------------ILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp ---G----------------SHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred ---H----------------HHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 0 11111122222223333322 367788888999999999999988877665444
No 7
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.68 E-value=1.3e-16 Score=156.32 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=55.6
Q ss_pred cCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy14708 323 YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGTPLQNNVNELFSLLNFLEP 401 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGTP~~n~~~dl~~ll~~L~~ 401 (513)
...+|+++|++.+.+....+ .-+|++||+||||++.+. .....+..+ .+..+++|||||..+ -.+++.+..+++|
T Consensus 203 ~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~~~-~~~~~~l~~l~g~ 278 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRDG-KANIMQYVGMFGE 278 (282)
T ss_dssp TTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCCTT-STTHHHHHHHHCE
T ss_pred cCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCCCc-chHHHHHHHhcCC
Confidence 45679999999998765432 236899999999999753 444555666 678899999999654 4667777776665
No 8
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.64 E-value=1.2e-15 Score=145.57 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=45.7
Q ss_pred CcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCH
Q psy14708 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNV 389 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~ 389 (513)
.+++++||+.+......+. -.|++||+||+|++.+.. ....+..+.+..+++|||||..++-
T Consensus 172 ~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 172 KPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp CSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC----
T ss_pred CCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEEEEEecCCCCCCC
Confidence 3689999999887766443 358999999999997653 3344556688899999999987753
No 9
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.61 E-value=9.4e-16 Score=165.87 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=46.5
Q ss_pred CCcEEEecHHHHHhch------hhhccccccEEEEccccccCCcc-hhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHH
Q psy14708 324 KFHVLITTFEIIISDC------LELKDFNWRLCIIDEAHRLKNRN-CKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~------~~l~~~~~~~vIvDEaH~~kn~~-s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll 396 (513)
..+|+++||+.+.... ..+....|++||+||||++.+.. +.....+..+....+++|||||..+...+++.++
T Consensus 274 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 274 SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHS
T ss_pred CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHc
Confidence 4568999999887653 23344568999999999997653 3344555666778899999999988877666554
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.56 E-value=2.4e-14 Score=153.02 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=52.1
Q ss_pred CCcEEEecHHHHHhchhh--h-ccccccEEEEccccccCCcchhHHHHHhhc---------ccccEEEEeCCCCCCC---
Q psy14708 324 KFHVLITTFEIIISDCLE--L-KDFNWRLCIIDEAHRLKNRNCKLLEGLRLL---------HLEHRVLLSGTPLQNN--- 388 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l-~~~~~~~vIvDEaH~~kn~~s~~~~al~~l---------~a~~r~~LTGTP~~n~--- 388 (513)
..+|+++|++.+...... + ...+|++||+||||.+.+.......+...+ ....+++|||||..++
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~ 181 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKT 181 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCS
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCcccc
Confidence 357999999999875443 2 334689999999999988764222222222 2246999999999876
Q ss_pred ----HHHHHHHHhhhCC
Q psy14708 389 ----VNELFSLLNFLEP 401 (513)
Q Consensus 389 ----~~dl~~ll~~L~~ 401 (513)
...+..+...++.
T Consensus 182 ~~~~~~~~~~l~~~l~~ 198 (555)
T 3tbk_A 182 AEEAMQHICKLCAALDA 198 (555)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 3444445555553
No 11
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.55 E-value=1.3e-14 Score=153.98 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGTPLQNNVNELFSLLNFLEPQ 402 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGTP~~n~~~dl~~ll~~L~~~ 402 (513)
..+|+++|++.+....... .-+|++||+||+|++.+. .....+..+ .+..+++|||||. +...+++.+..++++.
T Consensus 204 ~~~I~i~T~~~l~~~~~~~-~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~~~~~~~~~ 279 (510)
T 2oca_A 204 DAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGEI 279 (510)
T ss_dssp TCSEEEEEHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCGG-GCSSCHHHHHHHHCSE
T ss_pred CCcEEEEeHHHHhhchhhh-hhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCCC-CCcccHHHhHHhhCCe
Confidence 4679999999988764322 236899999999999763 344455666 5678999999994 4444455555555543
No 12
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.53 E-value=2.6e-14 Score=152.96 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=50.1
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCC---CCCeEEec
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGI---RGPFLVIA 105 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~---~~~~liv~ 105 (513)
.+|+|||.+++.+++. + +.+++++++|+|||++++..+......++ ..++||+|
T Consensus 6 ~~~~~~Q~~~i~~~~~----~-------------------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~ 62 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----G-------------------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62 (556)
T ss_dssp --CCHHHHHHHHHHHT----T-------------------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred CCCCHHHHHHHHHHHc----C-------------------CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEe
Confidence 6799999999998862 1 23788999999999998887766655443 55667777
Q ss_pred CC-CchhhHHHHHHhhc
Q psy14708 106 PL-STIPNWQREFEAWT 121 (513)
Q Consensus 106 P~-~~~~~W~~E~~~~~ 121 (513)
|. .++.||.+++.++.
T Consensus 63 P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 63 TKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 75 66666777666654
No 13
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.51 E-value=5.2e-14 Score=157.37 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=50.6
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCC---CCCeEEe
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGI---RGPFLVI 104 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~---~~~~liv 104 (513)
..+|+|||.+++.+++. + +.+|+++++|+|||++++..+......++ ..++||+
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~-------------------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl 302 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----G-------------------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302 (797)
T ss_dssp --CCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHh----C-------------------CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEE
Confidence 36899999999998862 1 23789999999999998887766655443 5566777
Q ss_pred cCC-CchhhHHHHHHhhc
Q psy14708 105 APL-STIPNWQREFEAWT 121 (513)
Q Consensus 105 ~P~-~~~~~W~~E~~~~~ 121 (513)
||. .++.||.+++.++.
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 303 ATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhc
Confidence 774 46666666666553
No 14
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.51 E-value=3.4e-14 Score=160.99 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=49.6
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCC---CCCeEEe
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGI---RGPFLVI 104 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~---~~~~liv 104 (513)
..+|+|||.+++.+++. + +.+|+++++|+|||++++..+.......+ ..++|||
T Consensus 246 ~~~~r~~Q~~ai~~il~----g-------------------~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl 302 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----G-------------------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302 (936)
T ss_dssp --CCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHc----C-------------------CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEE
Confidence 46899999999999862 1 23789999999999998887766554433 4566666
Q ss_pred cCC-CchhhHHHHHHhhc
Q psy14708 105 APL-STIPNWQREFEAWT 121 (513)
Q Consensus 105 ~P~-~~~~~W~~E~~~~~ 121 (513)
+|. .++.||.+++.++.
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 303 ATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHh
Confidence 664 46666666665553
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.50 E-value=9.8e-14 Score=152.96 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCcEEEecHHHHHhchhh--h-ccccccEEEEccccccCCcchhHHHHHhhc---------ccccEEEEeCCCCCCC---
Q psy14708 324 KFHVLITTFEIIISDCLE--L-KDFNWRLCIIDEAHRLKNRNCKLLEGLRLL---------HLEHRVLLSGTPLQNN--- 388 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l-~~~~~~~vIvDEaH~~kn~~s~~~~al~~l---------~a~~r~~LTGTP~~n~--- 388 (513)
..+|+++|++.+.+.... + ...+|++||+||||++.+.......+...+ ....+++|||||..++
T Consensus 111 ~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~ 190 (696)
T 2ykg_A 111 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKT 190 (696)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCS
T ss_pred CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCcccc
Confidence 457999999999886442 2 345689999999999987664333321111 3467899999998543
Q ss_pred ----HHHHHHHHhhhCC
Q psy14708 389 ----VNELFSLLNFLEP 401 (513)
Q Consensus 389 ----~~dl~~ll~~L~~ 401 (513)
..++..++..++.
T Consensus 191 ~~~~~~~i~~~~~~l~~ 207 (696)
T 2ykg_A 191 TDEALDYICKLCASLDA 207 (696)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 4555555554443
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=153.73 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=49.0
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCC----CCCeEEe
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGI----RGPFLVI 104 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~----~~~~liv 104 (513)
.+|+|||.+++.+++. + +.+++++++|+|||++++..+......+. .+++||+
T Consensus 6 ~~l~~~Q~~~i~~il~----g-------------------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl 62 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----G-------------------KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVL 62 (699)
T ss_dssp -CCCHHHHHHHHHHHS----S-------------------CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCE
T ss_pred CCccHHHHHHHHHHHh----C-------------------CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEE
Confidence 6799999999999872 1 23789999999999999887765543322 2566666
Q ss_pred cCC-CchhhH-HHHHHhhc
Q psy14708 105 APL-STIPNW-QREFEAWT 121 (513)
Q Consensus 105 ~P~-~~~~~W-~~E~~~~~ 121 (513)
+|. .++.|| .+++.++.
T Consensus 63 ~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 63 VNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp ESCSHHHHHHHHHTHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHc
Confidence 665 355666 66666554
No 17
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=126.03 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=48.8
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhc----CCCCCeEE
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKT----GIRGPFLV 103 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~----~~~~~~li 103 (513)
..+|+|||.+++..++. + +.+++...+|.|||.+++..+...... ....+++|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~-------------------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~li 87 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----G-------------------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIV 87 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----T-------------------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCCchHHHHHHHHHHhc----C-------------------CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEE
Confidence 36899999999998862 1 237889999999999998876554332 22456666
Q ss_pred ecCC-Cchhh-HHHHHHhhc
Q psy14708 104 IAPL-STIPN-WQREFEAWT 121 (513)
Q Consensus 104 v~P~-~~~~~-W~~E~~~~~ 121 (513)
+||. .++.| |.+++.+|.
T Consensus 88 l~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 88 LVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp EESSHHHHHHHHHHTHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHh
Confidence 6665 44455 655555553
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.36 E-value=2.9e-12 Score=129.28 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=54.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|+|+|.+++.+++.. .+..++..++|.|||.+++..+......+...+++|++|.
T Consensus 27 ~~~~~~Q~~~i~~~~~~----------------------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLND----------------------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CSCCHHHHHHHHHHHHT----------------------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CCCCHHHHHHHHHHhCC----------------------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 37999999999988621 1236788999999999988777666555566778888886
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 85 ~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 85 ELAIQVADEIESLK 98 (367)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67778888877765
No 19
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.35 E-value=4.5e-12 Score=118.98 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=56.4
Q ss_pred CCCCCCCCCCccccCCCCccC-----C-ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCC
Q psy14708 7 PKKKPPASDWVKLEKSPVYKN-----D-NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLG 80 (513)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~-----~-~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlG 80 (513)
+........|.++.-+|.... + ..++|||.+++..++. + +.+++...+|.|
T Consensus 7 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~-------------------~~~li~~~TGsG 63 (220)
T 1t6n_A 7 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL----G-------------------MDVLCQAKSGMG 63 (220)
T ss_dssp -------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSC
T ss_pred CcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----C-------------------CCEEEECCCCCc
Confidence 334444555666655444221 1 2599999999988862 1 227788899999
Q ss_pred chhhHHHHHHhhhhcCC-CCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 81 KTIQSLTFVDAVFKTGI-RGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 81 KT~~~iali~~~~~~~~-~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
||.+++..+........ ..+++|+||. .++.||.++++++.
T Consensus 64 KT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 64 KTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp HHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 99988776655443322 3367777776 66677777776653
No 20
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.32 E-value=1e-11 Score=115.18 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=41.1
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..+++++|++.+...... +..-+++.||+||||.+.+.+ ......+..+. ....+++|||+.
T Consensus 120 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence 356999999988664332 233468899999999874432 22333344443 456799999985
No 21
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.31 E-value=1.4e-11 Score=116.59 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=48.3
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHH-HHHHhhhhcCCCCCeEEecCC-
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSL-TFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~i-ali~~~~~~~~~~~~liv~P~- 107 (513)
.++|||.+++..++. + +..++...+|.|||.+.+ .++......+...+++|++|.
T Consensus 46 ~~~~~Q~~~i~~~~~----~-------------------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 102 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----G-------------------LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTR 102 (230)
T ss_dssp SCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhC----C-------------------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCH
Confidence 599999999988762 1 126788899999998854 444443344445677788876
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.++.
T Consensus 103 ~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 103 EIAVQIHSVITAIG 116 (230)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777776653
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=117.37 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=42.8
Q ss_pred CCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..+|+++|++.+...... +...++++||+||||.+.+.+ ......+..+. ...++++|||+.
T Consensus 146 ~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 146 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred CCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 457999999998765332 333468899999999985432 33334445554 445899999985
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.29 E-value=2.7e-11 Score=123.51 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=56.0
Q ss_pred CCCccccCCCCccC-----C-ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHH
Q psy14708 14 SDWVKLEKSPVYKN-----D-NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLT 87 (513)
Q Consensus 14 ~~~~~~~~~p~~~~-----~-~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~ia 87 (513)
..|.++.-+|.... + ..|+|||.+++.+++. + +.+++..++|+|||.+++.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~-------------------~~~lv~a~TGsGKT~~~~~ 64 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL----G-------------------MDVLCQAKSGMGKTAVFVL 64 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----T-------------------CCEEEECSSCSSHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----C-------------------CcEEEECCCCCcHHHHHHH
Confidence 44655555554221 1 3599999999998862 1 2378899999999998876
Q ss_pred HHHhhhhc-CCCCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 88 FVDAVFKT-GIRGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 88 li~~~~~~-~~~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
.+...... ....+++|+||. .++.||.+++.++.
T Consensus 65 ~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 65 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 65544333 234477777776 66777777776664
No 24
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.28 E-value=2.3e-11 Score=114.40 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=57.4
Q ss_pred CCCCCCCccccCCCCccC------CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchh
Q psy14708 10 KPPASDWVKLEKSPVYKN------DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTI 83 (513)
Q Consensus 10 ~~~~~~~~~~~~~p~~~~------~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~ 83 (513)
.++...|.++.-.|.... -..++|||.+++..++. + +..++...+|.|||.
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~-------------------~~~lv~~pTGsGKT~ 66 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE----G-------------------HDVLAQAQSGTGKTG 66 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSSHHH
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----C-------------------CCEEEECCCCCcHHH
Confidence 334455666655554321 13799999999988762 1 227888999999998
Q ss_pred hH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 84 QS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 84 ~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
+. ++++..........+++|++|. .+..||.+++.++.
T Consensus 67 ~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 67 TFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp HHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 84 4444444333445577777776 66677777776653
No 25
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.28 E-value=4.7e-11 Score=114.58 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=40.3
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCc--chhHHHHHhhc--c---cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNR--NCKLLEGLRLL--H---LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~--~s~~~~al~~l--~---a~~r~~LTGTP~ 385 (513)
..+|+++|++.+...... +..-.+++||+||||.+-+. .......+..+ . ....+++||||.
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 457999999998764332 22335689999999997443 22233334322 2 345899999985
No 26
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.27 E-value=1e-11 Score=140.50 Aligned_cols=84 Identities=11% Similarity=0.149 Sum_probs=56.6
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC-C
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP-L 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P-~ 107 (513)
..|||||..|+.++++....+...- ..| ...++|++.+.+|+|||++++.++..+...+...++||||| .
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~---~~~------~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~ 340 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAK---NWS------KPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRK 340 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHT---CCS------SGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGG
T ss_pred ccCCHHHHHHHHHHHHHHHhccccc---ccc------cCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcH
Confidence 4699999999999986544221000 000 01356999999999999999777644443344457788888 4
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..||..++.+|.
T Consensus 341 eL~~Q~~~~f~~f~ 354 (1038)
T 2w00_A 341 DLDYQTMKEYQRFS 354 (1038)
T ss_dssp GCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777777664
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.27 E-value=1.3e-11 Score=125.86 Aligned_cols=70 Identities=16% Similarity=0.029 Sum_probs=48.9
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhh-hhcCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~-~~~~~~~~~liv~P~ 107 (513)
.+|+|||.+++.+++.. +.+++..++|.|||.+++..+... .......++||+||.
T Consensus 42 ~~~~~~Q~~~i~~i~~~-----------------------~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEG-----------------------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp CSCCHHHHHHHHHHHHT-----------------------CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHHhCC-----------------------CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 47999999999988731 127788999999998865544333 333345577777776
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 99 ~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 99 RELALQIQKVVMALA 113 (394)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 66677777766654
No 28
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.26 E-value=3.6e-11 Score=111.39 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=48.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh-hcCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~-~~~~~~~~liv~P~ 107 (513)
..++|||.+++..++. + +..++...+|.|||...+..+.... ......+++|++|.
T Consensus 24 ~~~~~~Q~~~i~~~~~----~-------------------~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----G-------------------RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp CSCCHHHHHHHHHHHT----T-------------------CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred CCCCHHHHHHHHHHcc----C-------------------CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 3699999999988762 1 2367888899999987765444332 22334567777776
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.++.
T Consensus 81 ~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 81 RELALQVSQICIQVS 95 (206)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 66677777766653
No 29
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.24 E-value=3.4e-11 Score=123.79 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=49.4
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh-cCCCCCeEEecCC-
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPL- 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~-~~~~~~~liv~P~- 107 (513)
.++|||.+++.+++. + +.+++..++|.|||.+.+..+..... .....++||++|.
T Consensus 59 ~~~~~Q~~ai~~i~~----~-------------------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----G-------------------RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp SCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhC----C-------------------CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 599999999998872 1 23788899999999988766554433 2345677777776
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 116 ~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 116 ELAVQIQKGLLALG 129 (410)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 56677777776653
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.24 E-value=3.1e-11 Score=120.27 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=46.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
..|+|||.+++.+++. + +.+++..++|.|||.+++..+... ..+++|++|.
T Consensus 15 ~~l~~~Q~~~i~~i~~----~-------------------~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~ 66 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----G-------------------KNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTR 66 (337)
T ss_dssp CSCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSH
T ss_pred CCCCHHHHHHHHHHhc----C-------------------CCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCH
Confidence 3699999999998862 1 237888999999998877665432 4567777775
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 67 ~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 67 ELTRQVASHIRDIG 80 (337)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66667777766553
No 31
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.23 E-value=4e-11 Score=112.45 Aligned_cols=70 Identities=14% Similarity=-0.017 Sum_probs=49.9
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhh-hhcCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~-~~~~~~~~~liv~P~ 107 (513)
..++|+|.+++..++.. +..++...+|.|||.+.+..+... .......+++|++|.
T Consensus 25 ~~~~~~Q~~~i~~~~~~-----------------------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRG-----------------------ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp CSCCHHHHHHHHHHHHT-----------------------CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHHhCC-----------------------CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 46899999999888631 226788899999999865544333 333345678888886
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 82 ~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 82 RELATQIYHETLKIT 96 (219)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 67778888777664
No 32
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.21 E-value=8.3e-11 Score=120.39 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=49.5
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC-CCCCeEEecCC-
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPL- 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~-~~~~~liv~P~- 107 (513)
.|+|||.+++.+++.. +.+++..++|.|||.+++..+....... ...+++|++|.
T Consensus 43 ~~~~~Q~~~i~~i~~~-----------------------~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITG-----------------------RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp SCCHHHHHHHHHHHHT-----------------------CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhcC-----------------------CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 5999999999988731 2377889999999998776655443332 34567777776
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 100 ~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 100 ELALQTSQVVRTLG 113 (400)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66677777776654
No 33
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.20 E-value=8.4e-11 Score=112.69 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=42.4
Q ss_pred CCcEEEecHHHHHhchhh---hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~~ 386 (513)
..+|+++|++.+...... +..-.++.||+||||++.+.+ ......+..+. ....+++|||+..
T Consensus 161 ~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence 457999999998765432 233457899999999875432 22334444443 4568999999853
No 34
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.18 E-value=8.7e-11 Score=111.63 Aligned_cols=69 Identities=20% Similarity=0.104 Sum_probs=48.3
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh-cCCCCCeEEecCC-
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPL- 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~-~~~~~~~liv~P~- 107 (513)
.++|+|.+++..++. + +..++...+|.|||.+.+..+..... .....+++|++|.
T Consensus 52 ~~~~~Q~~ai~~i~~----~-------------------~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----G-------------------YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp SCCHHHHHHHHHHHT----T-------------------CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhC----C-------------------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 599999999988762 1 12678889999999886554443332 2345577888886
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.++.
T Consensus 109 ~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 109 ELAQQIQKVILALG 122 (237)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777776654
No 35
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=119.68 Aligned_cols=70 Identities=20% Similarity=0.100 Sum_probs=50.0
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh-cCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~-~~~~~~~liv~P~ 107 (513)
..++|+|.+++..++. + +.+++..++|.|||.+++..+..... .....+++|++|.
T Consensus 61 ~~~~~~Q~~~i~~~~~----~-------------------~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----G-------------------YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CSCCHHHHHHHHHHHT----T-------------------CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHHHHHHhHHHhC----C-------------------CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3689999999988762 1 12688899999999997665554433 3345677888886
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.++.
T Consensus 118 ~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 118 RELAQQIQKVVMALG 132 (414)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHh
Confidence 56777777776654
No 36
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.14 E-value=1.9e-10 Score=117.09 Aligned_cols=72 Identities=17% Similarity=0.102 Sum_probs=51.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh-hcCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~-~~~~~~~~liv~P~ 107 (513)
..++|+|.+++..++.. . .+..++..++|.|||.+++..+.... ......+++|++|.
T Consensus 26 ~~~~~~Q~~~i~~~~~~----~-----------------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN----P-----------------PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSCCHHHHHHHHHHHCS----S-----------------CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHHHcC----C-----------------CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 47999999999988621 0 12378899999999998876554443 33345677888886
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 85 ~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 85 RELARQTLEVVQEMG 99 (395)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 57777877776653
No 37
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.11 E-value=5.2e-10 Score=105.39 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
..+|+++|++.+...... +..-++++||+||||.+-+.+ ......+..+. ....+++|||..
T Consensus 143 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 143 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred CCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCC
Confidence 367999999988764321 223357899999999875432 22333344444 446789999974
No 38
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.09 E-value=4.2e-10 Score=115.91 Aligned_cols=66 Identities=11% Similarity=0.224 Sum_probs=46.1
Q ss_pred CcEEEecHHHHHhchhhhccccccEEEEccccccCC-------------cchh-HHHHHhhc------------ccccEE
Q psy14708 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKN-------------RNCK-LLEGLRLL------------HLEHRV 378 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn-------------~~s~-~~~al~~l------------~a~~r~ 378 (513)
.+|+++|++.+......+...++++||+||+|.+.. .... ....+..+ .....+
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 197 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILV 197 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEE
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEE
Confidence 679999999998876666666899999999998632 2222 22333333 345678
Q ss_pred EEeCCCCCCCHH
Q psy14708 379 LLSGTPLQNNVN 390 (513)
Q Consensus 379 ~LTGTP~~n~~~ 390 (513)
++||||......
T Consensus 198 ~~SAT~~~~~~~ 209 (414)
T 3oiy_A 198 VSSATAKPRGIR 209 (414)
T ss_dssp ESSCCSSCCSST
T ss_pred EEecCCCcchhH
Confidence 999997666544
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.08 E-value=6.8e-10 Score=127.89 Aligned_cols=62 Identities=29% Similarity=0.448 Sum_probs=44.7
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhccc-ccEEEEeCCCCCCCHHH
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHL-EHRVLLSGTPLQNNVNE 391 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a-~~r~~LTGTP~~n~~~d 391 (513)
..+|+++|++.+.... .--++++||+||+|++ .......+..+.. ...++|||||+.+....
T Consensus 706 ~~dIvV~T~~ll~~~~---~~~~l~lvIiDEaH~~---g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRF---GVRHKERIKAMRANVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp CCSEEEECTHHHHSCC---CCSSEEEEEEESGGGS---CHHHHHHHHHHHTTSEEEEEESSCCCHHHHH
T ss_pred CCCEEEECHHHHhCCc---cccccceEEEechHhc---ChHHHHHHHHhcCCCCEEEEcCCCChhhHHH
Confidence 4679999998886542 2346789999999997 3344555666644 56899999998765443
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.07 E-value=6.2e-10 Score=106.11 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=48.3
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhc--CCCCCeEEecC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKT--GIRGPFLVIAP 106 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~--~~~~~~liv~P 106 (513)
..++|+|.+++..++. + +..++...+|.|||...+..+...... ....+++|++|
T Consensus 50 ~~~~~~Q~~~i~~~~~----~-------------------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~P 106 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----G-------------------RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISP 106 (245)
T ss_dssp CSCCHHHHHHHHHHHT----T-------------------CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECS
T ss_pred CCCCHHHHHHHHHHhC----C-------------------CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeC
Confidence 3599999999987762 1 226788889999999865544333322 23446788888
Q ss_pred C-CchhhHHHHHHhhc
Q psy14708 107 L-STIPNWQREFEAWT 121 (513)
Q Consensus 107 ~-~~~~~W~~E~~~~~ 121 (513)
. .+..||.+++.++.
T Consensus 107 t~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 107 TRELASQIHRELIKIS 122 (245)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 6 67777887777664
No 41
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.03 E-value=1.4e-09 Score=111.41 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=56.9
Q ss_pred CCCCCccccCCCCcc------CCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhH
Q psy14708 12 PASDWVKLEKSPVYK------NDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQS 85 (513)
Q Consensus 12 ~~~~~~~~~~~p~~~------~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~ 85 (513)
+...|..+.-+|.+. .-..++|+|.+++..++. +. .+..++...+|.|||.++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~-----------------~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA----EP-----------------PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHS----SS-----------------CCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CC-----------------CCeEEEECCCCchHHHHH
Confidence 344555555555321 114799999999988862 10 123678889999999987
Q ss_pred HHHHHhhh-hcCCCCCeEEecCC-CchhhHHHHHHhhc
Q psy14708 86 LTFVDAVF-KTGIRGPFLVIAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 86 iali~~~~-~~~~~~~~liv~P~-~~~~~W~~E~~~~~ 121 (513)
+..+.... ......+++|++|. .++.||.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 82 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 65544333 33344578888886 56677777776653
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.5e-09 Score=121.45 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=49.0
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+.+|+|||.+++..+.. + +..+++.++|.|||+++...+...... ..+++|++|.
T Consensus 84 ~f~L~~~Q~eai~~l~~----g-------------------~~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~Pt 138 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----G-------------------ESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPI 138 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----T-------------------CEEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCCHHHHHHHHHHHc----C-------------------CCEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECCh
Confidence 46799999999998762 1 227889999999999886555444333 3567777775
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.+++
T Consensus 139 kaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 139 KALSNQKYRELLAEF 153 (1010)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 66667777766654
No 43
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.01 E-value=1.6e-09 Score=104.52 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=40.3
Q ss_pred CcEEEecHHHHHhchhh---hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCC
Q psy14708 325 FHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPL 385 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~---l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~ 385 (513)
.+|+++|++.+...... +.--++++||+||+|.+-..+ ......+..+. ....+++|||+.
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 57999999988664332 222357899999999974432 22233344443 355799999986
No 44
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.98 E-value=3.1e-09 Score=101.07 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=39.9
Q ss_pred CcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc--hhHHHHHhhc-ccccEEEEeCCCC
Q psy14708 325 FHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLL-HLEHRVLLSGTPL 385 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l-~a~~r~~LTGTP~ 385 (513)
.+|+++|++.+...... +..-++++||+||||.+-..+ ......+..+ .....+++|||+.
T Consensus 153 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 153 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 218 (242)
T ss_dssp CSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred CCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecC
Confidence 57999999988764331 223357899999999975432 2223334444 3345789999973
No 45
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.96 E-value=3.5e-09 Score=109.84 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=41.6
Q ss_pred CCcEEEecHHHHHhchh--hhccccccEEEEccccccCCcc--hhHHHHHhhc---ccccEEEEeCCCC
Q psy14708 324 KFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLL---HLEHRVLLSGTPL 385 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~--~l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l---~a~~r~~LTGTP~ 385 (513)
..+|+++|++.+..... .+..-+++.||+||||++-+.+ ......+..+ .....+++|||+.
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp CCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred CCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 45799999999876533 2223467899999999986543 2222333332 3456899999985
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.96 E-value=1.8e-09 Score=119.12 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=51.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|+|+|.+++..++.....+. ....++..++|.|||++++..+......+ ..++|++|.
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~-----------------~~~~Ll~a~TGSGKTlvall~il~~l~~g--~qvlvlaPtr 427 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEK-----------------PMNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTS 427 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSS-----------------CCCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCH
T ss_pred CCCCHHHHHHHHHHHhhccccC-----------------CCcEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCcH
Confidence 4799999999998874332211 11367888999999999877665554432 567777776
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.++.
T Consensus 428 ~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 428 ILAIQHYRRTVESF 441 (780)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66667777776664
No 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.92 E-value=1.8e-09 Score=114.35 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=52.5
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhh-hcCCCCCeEEecCC-
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPL- 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~-~~~~~~~~liv~P~- 107 (513)
.++|+|.+++..++.. . .+..++...+|.|||.+++..+.... ......++||++|.
T Consensus 141 ~p~~~Q~~ai~~i~~~----~-----------------~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN----P-----------------PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp ECCCTTSSSHHHHHCS----S-----------------CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred CcHHHHHHHHHHHHcC----C-----------------CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 5889999998877621 0 12367889999999998765554443 34446689999997
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.++.||.+++.++.
T Consensus 200 ~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 200 ELARQIMDVVTEMG 213 (508)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 68899999988875
No 48
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.91 E-value=6e-09 Score=107.02 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc-hhHHHHHhh---cc---cccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN-CKLLEGLRL---LH---LEHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~-s~~~~al~~---l~---a~~r~~LTGTP~~ 386 (513)
..+|+++|++.+...... +..-.+++||+||+|.+...+ ......+.. +. ....+++|||+..
T Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~ 222 (417)
T 2i4i_A 151 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK 222 (417)
T ss_dssp CCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH
T ss_pred CCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH
Confidence 357999999998764332 333457899999999975433 122222222 11 3457899999853
No 49
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.87 E-value=9.7e-10 Score=106.47 Aligned_cols=76 Identities=25% Similarity=0.284 Sum_probs=49.7
Q ss_pred HHHHHhHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcCCCCCChhHHHHHHHHHHHhcCCCCCcCC
Q psy14708 433 MMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508 (513)
Q Consensus 433 ~~~rrtk~~v~~~LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~~l~~l~~LRq~c~HP~L~~~ 508 (513)
--+||+|++|..+||++.+++++|+|||.|+++|+.+.++....+...........++..+++|||+|+||+|+.+
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~ 87 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKG 87 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcC
Confidence 3689999999999999999999999999999999999998776665433222345688999999999999998764
No 50
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.85 E-value=1.1e-08 Score=107.35 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh-cCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~-~~~~~~~liv~P~ 107 (513)
..++|+|..++..++. +. .+..++...+|.|||.+.+..+..... .....++||++|.
T Consensus 113 ~~p~~~Q~~ai~~il~----~~-----------------~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA----EP-----------------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CSCCHHHHHHHHHHTS----BS-----------------CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHHHc----CC-----------------CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 3688899999988862 10 123678889999999986554443333 2333467888886
Q ss_pred -CchhhHHHHHHhh
Q psy14708 108 -STIPNWQREFEAW 120 (513)
Q Consensus 108 -~~~~~W~~E~~~~ 120 (513)
.+..||.+++.++
T Consensus 172 ~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 172 YELALQTGKVIEQM 185 (479)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 5666777666554
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.85 E-value=2e-08 Score=114.01 Aligned_cols=70 Identities=24% Similarity=0.194 Sum_probs=44.3
Q ss_pred CcEEEecHHHHHhchhh--hccccccEEEEccccccCCcc--hhHHHHHhhcc-cccEEEEeCCCCCCCHHHHHHHH
Q psy14708 325 FHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRN--CKLLEGLRLLH-LEHRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~--s~~~~al~~l~-a~~r~~LTGTP~~n~~~dl~~ll 396 (513)
.+++++|.+.+.+.... ...-++.+||+||+|++.+.. ......+..+. ....++|||||.. ..++...+
T Consensus 124 ~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n--~~ef~~~l 198 (997)
T 4a4z_A 124 ANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPN--TYEFANWI 198 (997)
T ss_dssp SSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTT--HHHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCC--hHHHHHHH
Confidence 46888998888664322 122367899999999986532 22334445554 4567999999752 33444443
No 52
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.84 E-value=8.9e-09 Score=109.28 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=51.6
Q ss_pred CCcEEEecHHHHHhch--hhhccccccEEEEccccccCCcch---hHHHHH----hhcccccEEEEeCCCCCCCHHHHHH
Q psy14708 324 KFHVLITTFEIIISDC--LELKDFNWRLCIIDEAHRLKNRNC---KLLEGL----RLLHLEHRVLLSGTPLQNNVNELFS 394 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~--~~l~~~~~~~vIvDEaH~~kn~~s---~~~~al----~~l~a~~r~~LTGTP~~n~~~dl~~ 394 (513)
..+++++|++.+.... ..+...++.+||+||||.+...+. ..+..+ ..+....+++|||||......|+..
T Consensus 115 ~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 194 (523)
T 1oyw_A 115 QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194 (523)
T ss_dssp CCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHH
T ss_pred CCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHH
Confidence 4579999999886532 234456789999999999854331 122222 2334567899999999877777777
Q ss_pred HHhh
Q psy14708 395 LLNF 398 (513)
Q Consensus 395 ll~~ 398 (513)
.+.+
T Consensus 195 ~l~~ 198 (523)
T 1oyw_A 195 LLGL 198 (523)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 6654
No 53
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.79 E-value=2.9e-08 Score=109.66 Aligned_cols=71 Identities=24% Similarity=0.142 Sum_probs=45.3
Q ss_pred CCcEEEecHHHHHhchhhhc--cccccEEEEccccccCCcc-h-hHHHHHhhcc-cccEEEEeCCCCCCCHHHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCLELK--DFNWRLCIIDEAHRLKNRN-C-KLLEGLRLLH-LEHRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~--~~~~~~vIvDEaH~~kn~~-s-~~~~al~~l~-a~~r~~LTGTP~~n~~~dl~~ll 396 (513)
..+|+++|++.+......-. --++++||+||+|.+.... + .....+..++ ....++||||+.. ..++...+
T Consensus 114 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n--~~~~~~~l 189 (720)
T 2zj8_A 114 KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN--PEELAEWL 189 (720)
T ss_dssp GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC--HHHHHHHT
T ss_pred CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC--HHHHHHHh
Confidence 46799999998865433211 2257899999999986522 2 2223344444 5678999999853 55555443
No 54
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.77 E-value=2.3e-08 Score=110.11 Aligned_cols=71 Identities=21% Similarity=0.097 Sum_probs=44.5
Q ss_pred CCcEEEecHHHHHhchhhhc--cccccEEEEccccccCCcc-h-hHHHHHhhc----ccccEEEEeCCCCCCCHHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCLELK--DFNWRLCIIDEAHRLKNRN-C-KLLEGLRLL----HLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~--~~~~~~vIvDEaH~~kn~~-s-~~~~al~~l----~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
..+|+++|++.+......-. .-+++.||+||+|.+.+.. + .....+..+ .....++||||+.. ..++...
T Consensus 114 ~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~ 191 (702)
T 2p6r_A 114 DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEW 191 (702)
T ss_dssp TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHH
T ss_pred CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHH
Confidence 56799999988766433211 2257899999999986532 2 222223333 34678999999852 5555543
Q ss_pred H
Q psy14708 396 L 396 (513)
Q Consensus 396 l 396 (513)
+
T Consensus 192 l 192 (702)
T 2p6r_A 192 L 192 (702)
T ss_dssp T
T ss_pred h
Confidence 3
No 55
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.76 E-value=2.3e-08 Score=107.39 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=48.5
Q ss_pred cCCcEEEecHHHHHhc---hhh----hccccccEEEEccccccCCcc-------hhHHHHHhhcccccEEEEeCCCCCCC
Q psy14708 323 YKFHVLITTFEIIISD---CLE----LKDFNWRLCIIDEAHRLKNRN-------CKLLEGLRLLHLEHRVLLSGTPLQNN 388 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~---~~~----l~~~~~~~vIvDEaH~~kn~~-------s~~~~al~~l~a~~r~~LTGTP~~n~ 388 (513)
...+++++|++.+... ... +...++.+||+||||.+-..+ .........+....+++|||||....
T Consensus 135 ~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v 214 (591)
T 2v1x_A 135 SELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 214 (591)
T ss_dssp CCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHH
T ss_pred CCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHH
Confidence 3567999999988542 111 223378999999999975432 11112223335567899999998766
Q ss_pred HHHHHHHHhh
Q psy14708 389 VNELFSLLNF 398 (513)
Q Consensus 389 ~~dl~~ll~~ 398 (513)
..++...+..
T Consensus 215 ~~~i~~~l~~ 224 (591)
T 2v1x_A 215 LTDAQKILCI 224 (591)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 56
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.74 E-value=5e-08 Score=107.61 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=45.9
Q ss_pred CCcEEEecHHHHHhchhhh--ccccccEEEEccccccCCcch--hHHHHHhhcccccEEEEeCCCCCCCHHHHHHHH
Q psy14708 324 KFHVLITTFEIIISDCLEL--KDFNWRLCIIDEAHRLKNRNC--KLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l--~~~~~~~vIvDEaH~~kn~~s--~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll 396 (513)
..+|+++|++.+......- .--+++.||+||+|.+.+..- .....+..++....++||||+.. ..++...+
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n--~~~~~~~l 195 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISN--YKQIAKWL 195 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT--HHHHHHHH
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC--HHHHHHHh
Confidence 4679999998876643221 122578999999999864222 22233445566788999999952 45555443
No 57
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.73 E-value=8.6e-08 Score=109.91 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=48.3
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|+|+|.+++..+.. + +..+++.++|.|||++++..+...... ..+++|++|.
T Consensus 183 f~ltp~Q~~AI~~i~~----g-------------------~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~Ptr 237 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----G-------------------ESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIK 237 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----T-------------------CCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred CCCCHHHHHHHHHHHc----C-------------------CCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcH
Confidence 5799999999987741 1 226788899999999886665554433 3567777775
Q ss_pred CchhhHHHHHHhhc
Q psy14708 108 STIPNWQREFEAWT 121 (513)
Q Consensus 108 ~~~~~W~~E~~~~~ 121 (513)
.+..||.+++.+++
T Consensus 238 aLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 238 ALSNQKYRELLAEF 251 (1108)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66667777776654
No 58
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.72 E-value=3e-08 Score=106.63 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=47.1
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcC-----CCCCeEE
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG-----IRGPFLV 103 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~-----~~~~~li 103 (513)
..|+|+|.+++..++. +. .+..++...+|.|||+..+..+......+ ...++||
T Consensus 42 ~~~~~~Q~~~i~~il~----~~-----------------~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lv 100 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS----SE-----------------DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 100 (579)
T ss_dssp SSCCHHHHHHHHHHHC----SS-----------------SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEE
T ss_pred CCCCHHHHHHHHHHHc----cC-----------------CCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEE
Confidence 3699999999987751 10 12367788899999998655444332221 2336777
Q ss_pred ecCC-CchhhHHHHHHhhc
Q psy14708 104 IAPL-STIPNWQREFEAWT 121 (513)
Q Consensus 104 v~P~-~~~~~W~~E~~~~~ 121 (513)
++|. .++.||.+++.++.
T Consensus 101 l~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 101 VAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHH
T ss_pred EcchHHHHHHHHHHHHHHH
Confidence 7776 66677777776653
No 59
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.70 E-value=3.2e-08 Score=106.05 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=46.6
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCC-----CCCeEE
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGI-----RGPFLV 103 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~-----~~~~li 103 (513)
..|+|+|.+++..++. +. .+..++...+|.|||...+..+......+. ..++||
T Consensus 93 ~~~~~~Q~~~i~~~l~----~~-----------------~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~li 151 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS----SE-----------------DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 151 (563)
T ss_dssp SSCCHHHHHHHHHHHS----SS-----------------SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEE
T ss_pred CCCCHHHHHHHHHHhc----CC-----------------CCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEE
Confidence 3699999999987751 10 123678888999999986654443332221 236777
Q ss_pred ecCC-CchhhHHHHHHhh
Q psy14708 104 IAPL-STIPNWQREFEAW 120 (513)
Q Consensus 104 v~P~-~~~~~W~~E~~~~ 120 (513)
++|. .++.||.+++.++
T Consensus 152 l~Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 152 VAPTRDLALQIEAEVKKI 169 (563)
T ss_dssp ECSSHHHHHHHHHHHHHH
T ss_pred EcCcHHHHHHHHHHHHHH
Confidence 7775 6667777777665
No 60
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.69 E-value=8.2e-08 Score=94.38 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=46.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHH-HHHHhhhhcCCCCCeEEecCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSL-TFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~i-ali~~~~~~~~~~~~liv~P~ 107 (513)
..+.|+|..++..++. +. .+..++....|.|||...+ .++...........+||++|.
T Consensus 113 ~~pt~iQ~~ai~~il~----~~-----------------~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA----EP-----------------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CSCCHHHHHHHHHHTS----SS-----------------CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHHHc----CC-----------------CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 3678899999877651 10 1225677789999998854 444433333344467888886
Q ss_pred -CchhhHHHHHHhhc
Q psy14708 108 -STIPNWQREFEAWT 121 (513)
Q Consensus 108 -~~~~~W~~E~~~~~ 121 (513)
.+..|+.+++.++.
T Consensus 172 reLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 172 YELALQTGKVIEQMG 186 (300)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 66667777766553
No 61
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.60 E-value=2.7e-07 Score=105.82 Aligned_cols=67 Identities=10% Similarity=0.242 Sum_probs=46.0
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcc-------------hh-HHHHHhhc------------ccccE
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRN-------------CK-LLEGLRLL------------HLEHR 377 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~-------------s~-~~~al~~l------------~a~~r 377 (513)
..+|+++|.+.+.+....+..-++++||+||+|.+-... .. ....+..+ .....
T Consensus 174 ~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ 253 (1104)
T 4ddu_A 174 DYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 253 (1104)
T ss_dssp CCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEE
T ss_pred CCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceE
Confidence 367999999999877666666689999999999864321 11 22333333 23467
Q ss_pred EEEeCCCCCCCHH
Q psy14708 378 VLLSGTPLQNNVN 390 (513)
Q Consensus 378 ~~LTGTP~~n~~~ 390 (513)
+++||||....+.
T Consensus 254 ll~SAT~~p~~~~ 266 (1104)
T 4ddu_A 254 VVSSATAKPRGIR 266 (1104)
T ss_dssp EEECBSSCCCSST
T ss_pred EEEcCCCCcHHHH
Confidence 9999997766554
No 62
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.26 E-value=4.6e-06 Score=95.48 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=42.6
Q ss_pred CcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc------------ccccEEEEeCCCCCC
Q psy14708 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL------------HLEHRVLLSGTPLQN 387 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l------------~a~~r~~LTGTP~~n 387 (513)
.+|+++|.+.+......|. ++++||+||+|.+-+........+..+ .....+++|+|+...
T Consensus 156 ~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 6799999999998766544 688999999999866433333333333 123467888887655
No 63
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.07 E-value=2.7e-06 Score=83.00 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=47.5
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhc---CCCCCC---hhHHHHHHHHHHHhcCCCCCcCC
Q psy14708 446 IAPKEETVVEVELTNIQKKYYRGILERNFSFLSK---GTTSAN---VPNLMNTMMELRKCCIHPYLLNG 508 (513)
Q Consensus 446 LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~l~~---~~~~~~---~~~~l~~l~~LRq~c~HP~L~~~ 508 (513)
-|+..|++++|+||+.|+++|+.++..+...+.+ +..... ...+.+.++.||+||+||+|+.+
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d 88 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLID 88 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhcc
Confidence 4999999999999999999999998765443322 222122 34677899999999999999853
No 64
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.06 E-value=1.1e-05 Score=75.92 Aligned_cols=64 Identities=20% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhc----ccccEEEEeCCCCCCC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLL----HLEHRVLLSGTPLQNN 388 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l----~a~~r~~LTGTP~~n~ 388 (513)
..+++++|.+.+.+.... .--+++.||+||+|...-........+..+ .....+++|||+....
T Consensus 155 ~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 155 HASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp SSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred CCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 456899998877665432 123578999999997311111111122222 3456899999986544
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.06 E-value=3.5e-05 Score=91.89 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=45.8
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-C
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-S 108 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~ 108 (513)
.+.|.|.+++.-+++ . -...+++-..|.|||+.+.-.+......++.+++++++|. .
T Consensus 926 ~fnpiQ~q~~~~l~~----~------------------~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~ra 983 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYN----S------------------DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEA 983 (1724)
T ss_dssp BCCHHHHHHHHHHHS----C------------------CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHH
T ss_pred CCCHHHHHHHHHHhc----C------------------CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHH
Confidence 467889988876651 1 1126788889999999886666555555566788888886 5
Q ss_pred chhhHHHHHH
Q psy14708 109 TIPNWQREFE 118 (513)
Q Consensus 109 ~~~~W~~E~~ 118 (513)
++.|=.+++.
T Consensus 984 La~q~~~~~~ 993 (1724)
T 4f92_B 984 LAEQVYMDWY 993 (1724)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.97 E-value=1.7e-05 Score=81.77 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=31.7
Q ss_pred ccccccCCCCchhhH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHH
Q psy14708 71 CILADEMGLGKTIQS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREF 117 (513)
Q Consensus 71 giLademGlGKT~~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~ 117 (513)
.++.-++|.|||..+ ++++...... ..+++|++|. .+..|+.+.+
T Consensus 5 ~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~ 51 (431)
T 2v6i_A 5 TVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEAL 51 (431)
T ss_dssp EEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHh
Confidence 578889999999997 4444344333 3589999997 5666766554
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.89 E-value=0.00021 Score=85.27 Aligned_cols=70 Identities=23% Similarity=0.146 Sum_probs=41.7
Q ss_pred cCCcEEEecHHHHHhchhhh----ccccccEEEEccccccCCcchhHHHH-----Hh---hc-ccccEEEEeCCCCCCCH
Q psy14708 323 YKFHVLITTFEIIISDCLEL----KDFNWRLCIIDEAHRLKNRNCKLLEG-----LR---LL-HLEHRVLLSGTPLQNNV 389 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l----~~~~~~~vIvDEaH~~kn~~s~~~~a-----l~---~l-~a~~r~~LTGTP~~n~~ 389 (513)
...+|+++|++.+....... .--....||+||+|.+.+........ +. .+ ..-.+++||||-. ++
T Consensus 180 ~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~--N~ 257 (1724)
T 4f92_B 180 SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP--NY 257 (1724)
T ss_dssp GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT--TH
T ss_pred CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC--CH
Confidence 34679999999874422111 01245789999999996643332221 11 12 2346799999952 46
Q ss_pred HHHHH
Q psy14708 390 NELFS 394 (513)
Q Consensus 390 ~dl~~ 394 (513)
.|+..
T Consensus 258 ~dvA~ 262 (1724)
T 4f92_B 258 EDVAT 262 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 68
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.82 E-value=3.9e-05 Score=81.47 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=45.6
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.++||+|.+.+.-+.....+++ .+++...+|+|||+..+.-+.. ...+++|++|.
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~~-------------------~~~~~a~TGtGKT~~~l~~~~~-----~~~~~~~~~~t~ 61 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHGK-------------------TLLLNAKPGLGKTVFVEVLGMQ-----LKKKVLIFTRTH 61 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTTC-------------------EEEEECCTTSCHHHHHHHHHHH-----HTCEEEEEESCH
T ss_pred CCCCHHHHHHHHHHHHHHHcCC-------------------CEEEEcCCCCcHHHHHHHHHHh-----CCCcEEEEcCCH
Confidence 4699999998765554333332 2556667889999766544322 14689999997
Q ss_pred CchhhHHHHHHhh
Q psy14708 108 STIPNWQREFEAW 120 (513)
Q Consensus 108 ~~~~~W~~E~~~~ 120 (513)
.+..|+.+++.++
T Consensus 62 ~l~~q~~~~~~~l 74 (540)
T 2vl7_A 62 SQLDSIYKNAKLL 74 (540)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhc
Confidence 7788999998874
No 69
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.73 E-value=7.4e-05 Score=77.51 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=28.8
Q ss_pred ccccccCCCCchhhH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHH
Q psy14708 71 CILADEMGLGKTIQS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREF 117 (513)
Q Consensus 71 giLademGlGKT~~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~ 117 (513)
.++.-++|.|||.+. +.++...... ..+++|++|. .+..|+.+++
T Consensus 22 ~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 22 TIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp EEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHT
T ss_pred EEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHh
Confidence 367778999999974 4444433332 3577787876 5555666554
No 70
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.66 E-value=7e-05 Score=79.75 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=45.5
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.++||+|.+.+.-+.+...+++. .++.-.+|.|||+..+.-+.. ...+++|++|.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~-------------------~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~ 57 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFL-------------------VALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTH 57 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCE-------------------EEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSG
T ss_pred CCCCHHHHHHHHHHHHHHHcCCc-------------------EEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCH
Confidence 46899999987755544443332 455566889999887654433 24577888886
Q ss_pred CchhhHHHHHHhh
Q psy14708 108 STIPNWQREFEAW 120 (513)
Q Consensus 108 ~~~~~W~~E~~~~ 120 (513)
.+..|+.+|+.++
T Consensus 58 ~l~~q~~~~~~~l 70 (551)
T 3crv_A 58 NEFYPIYRDLTKI 70 (551)
T ss_dssp GGHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 5666777777655
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.65 E-value=7.1e-05 Score=77.40 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=32.0
Q ss_pred cccccccCCCCchhhH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHH
Q psy14708 70 NCILADEMGLGKTIQS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFE 118 (513)
Q Consensus 70 GgiLademGlGKT~~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~ 118 (513)
..++.-++|.|||..+ ++++...... ...++|++|. .+..|+.+++.
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHh
Confidence 3678889999999996 4444433332 3578888886 66667776654
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.64 E-value=0.00013 Score=75.80 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=32.9
Q ss_pred ccccccCCCCchhhH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFE 118 (513)
Q Consensus 71 giLademGlGKT~~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~ 118 (513)
.+++-..|.|||.+. +.++...... ..+++|++|. .+..|+.+++.
T Consensus 24 vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 24 TVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp EEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc
Confidence 677889999999994 5555444332 3688999997 67777777654
No 73
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.60 E-value=0.00021 Score=76.87 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchh-HHHHHhhccc---ccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK-LLEGLRLLHL---EHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~-~~~al~~l~a---~~r~~LTGTP~~ 386 (513)
..++++.|++.+.... .+..-+++.||+||+|.+...... ....+..+.. ...+++||||..
T Consensus 297 ~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 297 GAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp CCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred CCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 3468888888875432 234446889999999887322111 1222333332 226788999875
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.42 E-value=6.4e-05 Score=83.70 Aligned_cols=80 Identities=39% Similarity=0.679 Sum_probs=52.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
.++...+- +.+++..-..+ ||||+||+|||+++++.-. .+....... +++|||||.+
T Consensus 240 yQ~egv~~--l~~~~~~~~~~---ILademGlGKT~~ai~~i~----------------~l~~~~~~~--~~~LIV~P~s 296 (800)
T 3mwy_W 240 FQLTGINW--MAFLWSKGDNG---ILADEMGLGKTVQTVAFIS----------------WLIFARRQN--GPHIIVVPLS 296 (800)
T ss_dssp HHHHHHHH--HHHHHTTTCCE---EECCCTTSSTTHHHHHHHH----------------HHHHHHSCC--SCEEEECCTT
T ss_pred HHHHHHHH--HHHHhhcCCCE---EEEeCCCcchHHHHHHHHH----------------HHHHhcCCC--CCEEEEECch
Confidence 45555442 22333344455 6899999999999764222 111111111 4789999999
Q ss_pred chhhHHHHHHhhcC-CcEEEEcce
Q psy14708 109 TIPNWQREFEAWTD-LNVIVYHAT 131 (513)
Q Consensus 109 ~~~~W~~E~~~~~~-~~~~~~~~~ 131 (513)
++.||.+|+.+|.+ ..+..+++.
T Consensus 297 ll~qW~~E~~~~~p~~~v~~~~g~ 320 (800)
T 3mwy_W 297 TMPAWLDTFEKWAPDLNCICYMGN 320 (800)
T ss_dssp THHHHHHHHHHHSTTCCEEECCCS
T ss_pred HHHHHHHHHHHHCCCceEEEEeCC
Confidence 99999999999995 566666553
No 75
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.39 E-value=0.00034 Score=75.96 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=31.8
Q ss_pred cccccccCCCCchhhH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHH
Q psy14708 70 NCILADEMGLGKTIQS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFE 118 (513)
Q Consensus 70 GgiLademGlGKT~~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~ 118 (513)
-.++.-++|.|||..+ ++++..... ...+++|++|. .+..|+.+.+.
T Consensus 243 dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 243 LTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccHHHHHHHHHHHHh
Confidence 4678889999999996 444433333 23578888886 56666766654
No 76
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.32 E-value=0.00049 Score=74.10 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=33.2
Q ss_pred cccccccCCCCchhhH-HHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHH
Q psy14708 70 NCILADEMGLGKTIQS-LTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFE 118 (513)
Q Consensus 70 GgiLademGlGKT~~~-iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~ 118 (513)
-.++.-..|.|||.+. +.++..... ...++||++|. .+..|+.+++.
T Consensus 188 dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 188 LTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhc
Confidence 4678889999999985 555554443 34688999997 66666766653
No 77
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.24 E-value=0.00028 Score=76.06 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=48.8
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-C
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-S 108 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~ 108 (513)
++||.|.+.+.-+.....+++ -.++...+|+|||+..+.-+...... ...+++|++|. .
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~-------------------~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~ 62 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSY-------------------GVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNS 62 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSS-------------------EEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHH
T ss_pred CCCHHHHHHHHHHHHHHHcCC-------------------CEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHH
Confidence 479999998765554433332 25677778999998876544333222 23689999998 7
Q ss_pred chhhHHHHHHhhc
Q psy14708 109 TIPNWQREFEAWT 121 (513)
Q Consensus 109 ~~~~W~~E~~~~~ 121 (513)
+..|+.+|+.++.
T Consensus 63 l~~Qi~~el~~l~ 75 (620)
T 4a15_A 63 QEEQVIKELRSLS 75 (620)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7778999988875
No 78
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.93 E-value=0.0029 Score=69.35 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=35.9
Q ss_pred CcEEEecHHHHH-----hch----hhhccc---cccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHH
Q psy14708 325 FHVLITTFEIII-----SDC----LELKDF---NWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNEL 392 (513)
Q Consensus 325 ~~vvitt~~~~~-----~~~----~~l~~~---~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl 392 (513)
.+|++.|...+. ... ..+..- +...+|+||+|.+-.. .+..-+++|| |.... .++
T Consensus 169 ~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~l 235 (997)
T 2ipc_A 169 ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDL 235 (997)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHH
T ss_pred CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHH
Confidence 568888877773 221 122233 5789999999964211 2333489999 77766 444
Q ss_pred HHHH
Q psy14708 393 FSLL 396 (513)
Q Consensus 393 ~~ll 396 (513)
|..+
T Consensus 236 Y~~~ 239 (997)
T 2ipc_A 236 YYKM 239 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 79
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.47 E-value=0.02 Score=62.02 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=44.0
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+.|++||...+. .+ + -.+|.-..|+|||.+++.+|..+...+ .++||++|.+
T Consensus 188 ~~LN~~Q~~AV~~al~----~~--------~----------~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN 243 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS----QK--------E----------LAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSN 243 (646)
T ss_dssp TTCCHHHHHHHHHHHH----CS--------S----------EEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSH
T ss_pred CCCCHHHHHHHHHHhc----CC--------C----------ceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCch
Confidence 5789999999988762 00 0 156777799999999999888777654 6899999975
Q ss_pred ch
Q psy14708 109 TI 110 (513)
Q Consensus 109 ~~ 110 (513)
..
T Consensus 244 ~A 245 (646)
T 4b3f_X 244 IA 245 (646)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 80
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.39 E-value=0.012 Score=64.44 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=24.2
Q ss_pred CcEEEecHHHH-----Hhch----hhhccccccEEEEccccccC
Q psy14708 325 FHVLITTFEII-----ISDC----LELKDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 325 ~~vvitt~~~~-----~~~~----~~l~~~~~~~vIvDEaH~~k 359 (513)
.+|++.|...+ .... ..+..-++..+|+||++.+-
T Consensus 201 ~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 201 ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 46888887776 2221 23444578899999999874
No 81
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.28 E-value=0.014 Score=60.26 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=45.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|-+.|.+++..++.....+.+. .++--..|+|||.++.+++..+...+. ..+++++|.+
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~------------------~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T~ 84 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHH------------------VTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPTH 84 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCE------------------EEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCE------------------EEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCcH
Confidence 468899999999876544433211 456666889999888888777766543 5789999986
Q ss_pred chh
Q psy14708 109 TIP 111 (513)
Q Consensus 109 ~~~ 111 (513)
...
T Consensus 85 ~Aa 87 (459)
T 3upu_A 85 AAK 87 (459)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 82
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.22 E-value=0.0075 Score=65.90 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=24.3
Q ss_pred CcEEEecHHHHH-----hch----hhhccccccEEEEccccccC
Q psy14708 325 FHVLITTFEIII-----SDC----LELKDFNWRLCIIDEAHRLK 359 (513)
Q Consensus 325 ~~vvitt~~~~~-----~~~----~~l~~~~~~~vIvDEaH~~k 359 (513)
.+|++.|...+. ... ..+..-+...+|+||+|.+-
T Consensus 164 ~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 164 ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 568998888763 221 12445578899999999763
No 83
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.12 E-value=0.008 Score=66.35 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCcEEEecHHHHHhchhh-hccccccEEEEccccc-cCCcch--hHHHHHhhc-ccccEEEEeCCCCC
Q psy14708 324 KFHVLITTFEIIISDCLE-LKDFNWRLCIIDEAHR-LKNRNC--KLLEGLRLL-HLEHRVLLSGTPLQ 386 (513)
Q Consensus 324 ~~~vvitt~~~~~~~~~~-l~~~~~~~vIvDEaH~-~kn~~s--~~~~al~~l-~a~~r~~LTGTP~~ 386 (513)
..+++++|.+.+.+.... ....++++||+||+|. .-+.+. ...+.+... .....+++|+|+-.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~ 252 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA 252 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 345888888877653221 2234678999999995 211111 111222222 34568999999943
No 84
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.09 E-value=0.01 Score=64.91 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=24.6
Q ss_pred CcEEEecHHHH-----Hhch----hhhccccccEEEEcccccc
Q psy14708 325 FHVLITTFEII-----ISDC----LELKDFNWRLCIIDEAHRL 358 (513)
Q Consensus 325 ~~vvitt~~~~-----~~~~----~~l~~~~~~~vIvDEaH~~ 358 (513)
.+|++.|...+ .... ..+..-+...+|+|||+.+
T Consensus 173 ~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~m 215 (844)
T 1tf5_A 173 ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 215 (844)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhh
Confidence 57999998888 3332 2344456889999999986
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.98 E-value=0.02 Score=60.91 Aligned_cols=60 Identities=20% Similarity=0.111 Sum_probs=41.1
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+..|-+.|+.++..++. ++ -.++--..|+|||.++.+++...... ..++++++|.
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~-------------------~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT 241 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HR-------------------LVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPT 241 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CS-------------------EEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred cCCCCHHHHHHHHHHHh----CC-------------------EEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCc
Confidence 46788999999987751 11 15566678999999888877655543 3567777776
Q ss_pred Cchhh
Q psy14708 108 STIPN 112 (513)
Q Consensus 108 ~~~~~ 112 (513)
.....
T Consensus 242 ~~Aa~ 246 (574)
T 3e1s_A 242 GKAAR 246 (574)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 86
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.94 E-value=0.012 Score=63.68 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=24.7
Q ss_pred ccccEEEEccccccCCcch--hHHHHHhhccc--ccEEEEeCC
Q psy14708 345 FNWRLCIIDEAHRLKNRNC--KLLEGLRLLHL--EHRVLLSGT 383 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s--~~~~al~~l~a--~~r~~LTGT 383 (513)
..+++||+||+|.+.+..- .....+..+.+ ...+++|+|
T Consensus 238 ~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 238 TPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp SCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred ccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 3568999999999854332 23345555542 345667777
No 87
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.41 E-value=0.096 Score=48.36 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=32.3
Q ss_pred ccccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCC------CCCCCHHHHHHHHhhh
Q psy14708 345 FNWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGT------PLQNNVNELFSLLNFL 399 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGT------P~~n~~~dl~~ll~~L 399 (513)
..++.|||||+|.+... ....+..+ .....++++|- -+-+...+|..++..+
T Consensus 88 ~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V 146 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKI 146 (223)
T ss_dssp TTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEE
T ss_pred CCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheE
Confidence 45899999999998432 33344443 23678999996 1223345666665544
No 88
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.07 E-value=0.031 Score=50.03 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=24.2
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGT 383 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGT 383 (513)
.++.||+||+|.+... ....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 4689999999998322 44445433 34677888887
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.00 E-value=0.25 Score=49.50 Aligned_cols=53 Identities=9% Similarity=0.298 Sum_probs=34.0
Q ss_pred hhccccccEEEEccccccCCcchhHHHHHh-hcc--cccEEEEeCCCCCCCHHHHHHHH
Q psy14708 341 ELKDFNWRLCIIDEAHRLKNRNCKLLEGLR-LLH--LEHRVLLSGTPLQNNVNELFSLL 396 (513)
Q Consensus 341 ~l~~~~~~~vIvDEaH~~kn~~s~~~~al~-~l~--a~~r~~LTGTP~~n~~~dl~~ll 396 (513)
.+...+++.+|+||+|.+++.. ....++. .+. ...++++.+||-..+ -++.+.
T Consensus 268 slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~ 323 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIW 323 (385)
T ss_dssp HHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHH
T ss_pred CccCCCCCEEEechhhhcCCCH-HHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHH
Confidence 3566678999999999997622 2333333 232 357889999996553 444444
No 90
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.78 E-value=0.12 Score=55.50 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=39.4
Q ss_pred ccCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCC
Q psy14708 322 LYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
....+|+.+|...... ..+....|+.||||||...-.+. ..+..+....+++|-|=|-|
T Consensus 317 l~~~~vI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 317 LMNADVICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp HHTCSEEEEETGGGGC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred HhcCCEEEEcChhhcc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 4566788888765543 33566789999999997653322 22333345678999998766
No 91
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.45 E-value=0.19 Score=55.56 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=39.0
Q ss_pred cCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCC
Q psy14708 323 YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
...+||.+|...+.. ..+....|+.||||||...-.+ ...+..+....+++|-|=|-|
T Consensus 494 ~~a~VI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~----~~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 494 MNADVICCTCVGAGD--PRLAKMQFRSILIDESTQATEP----ECMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp HHCSEEEEETGGGGC--TTTTTCCCSEEEETTGGGSCHH----HHHHHHTTTBSEEEEEECTTS
T ss_pred ccCCEEEEchhhhCC--hhhhcCCCCEEEEECCCCCCcH----HHHHHHHhcCCeEEEeccccc
Confidence 456788888766543 2356678999999999766322 123333455678999998766
No 92
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.31 E-value=0.15 Score=54.57 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=29.7
Q ss_pred cccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQN 387 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n 387 (513)
+++.||||||+.+. .......+..+....+++|.|=|-|-
T Consensus 262 ~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liLvGD~~QL 301 (608)
T 1w36_D 262 HLDVLVVDEASMID--LPMMSRLIDALPDHARVIFLGDRDQL 301 (608)
T ss_dssp SCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEEEECTTSG
T ss_pred CCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEEEcchhhc
Confidence 67899999999773 22344556667778899999977553
No 93
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.13 Score=56.97 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=38.6
Q ss_pred ccCCcEEEecHHHHHhchhhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCC
Q psy14708 322 LYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQ 386 (513)
Q Consensus 322 ~~~~~vvitt~~~~~~~~~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~ 386 (513)
....+++.+|...+.. ..+.. .|+.||||||+.+..+. ..+..+....+++|-|=|-|
T Consensus 496 l~~a~VI~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 496 LNKADVVCCTCVGAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp HHTCSEEEEETTGGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred hccCCEEEechhhcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 3456788888766552 23444 89999999998763221 23333455678999998766
No 94
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.13 E-value=0.21 Score=45.61 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=24.5
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGT 383 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGT 383 (513)
.++.|||||+|.+... ....+..+ .....++++|=
T Consensus 101 ~~dvViIDEaQF~~~~---~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD---IVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHhhCCCEEEEEec
Confidence 4789999999998433 23455554 34668888885
No 95
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.87 E-value=0.12 Score=46.39 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=32.6
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCC--CCC----CCHHHHHHHHhhh
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGT--PLQ----NNVNELFSLLNFL 399 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGT--P~~----n~~~dl~~ll~~L 399 (513)
.++.||+||+|.+... ....+..+ .....++++|- .++ +...+|..++..+
T Consensus 81 ~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 4799999999998422 34445554 33557888874 222 5566666666655
No 96
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.74 E-value=0.15 Score=55.25 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=54.8
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.++.+.|..++.-+......+... ..|.--.|.|||+++..++... .+++|||+|+
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~------------------~~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~ 63 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERF------------------VTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNK 63 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSE------------------EEEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSH
T ss_pred CCCCCCChHHHHHHHHHHhcCCCc------------------EEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCH
Confidence 467788999988666444333210 1344457889999998777544 3589999997
Q ss_pred CchhhHHHHHHhhcCCc-EEEEc
Q psy14708 108 STIPNWQREFEAWTDLN-VIVYH 129 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~~~-~~~~~ 129 (513)
....||..|++.|++.. +..+.
T Consensus 64 ~~A~ql~~el~~~~~~~~V~~fp 86 (664)
T 1c4o_A 64 ILAAQLAAEFRELFPENAVEYFI 86 (664)
T ss_dssp HHHHHHHHHHHHHCTTSEEEECC
T ss_pred HHHHHHHHHHHHHCCCCeEEEcC
Confidence 88889999999998743 44333
No 97
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.42 E-value=0.64 Score=49.49 Aligned_cols=45 Identities=9% Similarity=0.218 Sum_probs=30.4
Q ss_pred hccccccEEEEccccccCCcchhHHHHHhh-cc--cccEEEEeCCCCCC
Q psy14708 342 LKDFNWRLCIIDEAHRLKNRNCKLLEGLRL-LH--LEHRVLLSGTPLQN 387 (513)
Q Consensus 342 l~~~~~~~vIvDEaH~~kn~~s~~~~al~~-l~--a~~r~~LTGTP~~n 387 (513)
+...+++.+|+||+|..++.. ....++.. +. ...++++++||-..
T Consensus 269 lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 269 VRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred ccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 445568899999999997632 33344433 32 34789999999654
No 98
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.97 E-value=0.16 Score=51.83 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.2
Q ss_pred ccccEEEEccccccCCcchhHHHHH-hhcccccEEEEeCCCCCC
Q psy14708 345 FNWRLCIIDEAHRLKNRNCKLLEGL-RLLHLEHRVLLSGTPLQN 387 (513)
Q Consensus 345 ~~~~~vIvDEaH~~kn~~s~~~~al-~~l~a~~r~~LTGTP~~n 387 (513)
..++.|||||+..+ ......++ ..+++ .+++|.|=|-|-
T Consensus 233 ~~~d~liiDE~sm~---~~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 233 CQFKRLFIDEGLML---HTGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCCSEEEEETGGGS---CHHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred CcCCEEEEeCcccC---CHHHHHHHHHhCCC-CEEEEecCcccc
Confidence 35799999999977 22333333 33444 899999977553
No 99
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.58 E-value=0.39 Score=44.30 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.6
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeCC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSGT 383 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTGT 383 (513)
.++.|++||+|.+.+ ....+..+ .....++++|=
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEec
Confidence 478999999999953 44444444 34567888883
No 100
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.43 E-value=0.44 Score=51.44 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=55.1
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.++..+|..++.-+......+... ..|.--.|.|||+++..++... .+++|||+|+
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~------------------~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~ 67 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKH------------------QTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNK 67 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSE------------------EEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCc------------------EEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCH
Confidence 567789999988766544433211 1233446889999988776543 3589999997
Q ss_pred CchhhHHHHHHhhcCC-cEEEEc
Q psy14708 108 STIPNWQREFEAWTDL-NVIVYH 129 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~~-~~~~~~ 129 (513)
....+|..|++.|++. .+..+.
T Consensus 68 ~~A~~l~~el~~~~~~~~v~~fp 90 (661)
T 2d7d_A 68 TLAGQLYSEFKEFFPNNAVEYFV 90 (661)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCcEEEcc
Confidence 8888999999999874 455544
No 101
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.68 E-value=1.3 Score=40.40 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=21.9
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSG 382 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTG 382 (513)
+.+.|+|||||.+... ....+..+ ....++++.|
T Consensus 101 ~~dvV~IDEaQFf~~~---~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDE---IVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTH---HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEechhcCCHH---HHHHHHHHHHCCCEEEEee
Confidence 5689999999999542 33334333 3455666666
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.51 E-value=0.38 Score=51.64 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=35.0
Q ss_pred cccccCCCCchhhHHHHHHhhhhcC--CCCCeEEecCCCch-hhHHHHHHhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAPLSTI-PNWQREFEAWTD 122 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~--~~~~~liv~P~~~~-~~W~~E~~~~~~ 122 (513)
++--..|+|||.+.+.-+..+...+ +..++|+++++... ..-.+.+.+..+
T Consensus 26 lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 26 LVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3444579999999998887776653 45689999987544 445555655543
No 103
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.99 E-value=0.4 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.4
Q ss_pred cccccccCCCCchhhHHHHHHhhhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~ 94 (513)
+-+|.-+.|+|||..+-++......
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678889999999998877655433
No 104
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=88.76 E-value=2.1 Score=46.30 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=38.0
Q ss_pred cCCcEEEecHHHHHhch---------hhhccccccEEEEccccccCCcchhHHHHHhhcccccEEEEeCCCCCCCHHHHH
Q psy14708 323 YKFHVLITTFEIIISDC---------LELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELF 393 (513)
Q Consensus 323 ~~~~vvitt~~~~~~~~---------~~l~~~~~~~vIvDEaH~~kn~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~ 393 (513)
...||+-.|-..+.-|. ....+.+++.+||||+-.+--. .++.-+++||.+ ... .++|
T Consensus 213 Y~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLID-----------eArtPLiISg~~-~~~-~~~y 279 (822)
T 3jux_A 213 YLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLID-----------EARTPLIISGPS-KES-PSVY 279 (822)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTT-----------GGGSCEEEECCC-CSC-HHHH
T ss_pred hcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeec-----------CCCCCceeeCCC-CCc-cHHH
Confidence 34578777766554431 2344567899999999654111 345567788843 333 3566
Q ss_pred HHHhhhCC
Q psy14708 394 SLLNFLEP 401 (513)
Q Consensus 394 ~ll~~L~~ 401 (513)
..+.-+.+
T Consensus 280 ~~~~~~v~ 287 (822)
T 3jux_A 280 RRFAQIAK 287 (822)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55544433
No 105
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.19 E-value=3.1 Score=40.48 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=34.1
Q ss_pred chhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhh
Q psy14708 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 31 Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~ 94 (513)
++|+|.+.+..+...+.+++. ..+-++.-+.|+|||..+.+++.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~----------------~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRG----------------HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCC----------------CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCc----------------ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 689999998888765554431 122456777888999999988776643
No 106
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.94 E-value=1.9 Score=41.78 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.8
Q ss_pred hhcccccccCCCCchhhHHHHHH
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~ 90 (513)
.+|-+|.-+.|+|||..+-++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45688999999999998877654
No 107
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.71 E-value=2.2 Score=38.73 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=16.4
Q ss_pred ccccccCCCCchhhHHHHHHhh
Q psy14708 71 CILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~ 92 (513)
-+|.-+.|.|||..+-++....
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5677788899999887765443
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.24 E-value=2.9 Score=40.36 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=17.3
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
+-+|.-+.|+|||..+-++....
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 36677888999998887766444
No 109
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.11 E-value=1.7 Score=41.87 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=28.8
Q ss_pred cccEEEEccccccC-Cc-chhHHHHHhhcccccEEEEeCCCCCCCHHHHHHH
Q psy14708 346 NWRLCIIDEAHRLK-NR-NCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSL 395 (513)
Q Consensus 346 ~~~~vIvDEaH~~k-n~-~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~l 395 (513)
....||+||+|.+. .. .......+.......++++|.++...-...+.+-
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 45789999999994 11 1122222333345678888887765433344443
No 110
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=76.93 E-value=5.7 Score=40.33 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=17.8
Q ss_pred cccccccCCCCchhhHHHHHHhhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVF 93 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~ 93 (513)
..+|.-+.|+|||..+-++.....
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367788899999988877654443
No 111
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=73.44 E-value=1.1 Score=42.34 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=56.9
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL- 107 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~- 107 (513)
.+|+|||.+++.+++.. ..++|++++|+|||.++++++......+ .+++||+||.
T Consensus 112 ~~l~~~Q~~ai~~~l~~-----------------------~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil~Pt~ 167 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-----------------------RRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTT 167 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-----------------------SEEEECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEECSSH
T ss_pred cCccHHHHHHHHHHHhc-----------------------CCeEEEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEEECCH
Confidence 47999999999988731 2378899999999999988776655432 3489999997
Q ss_pred CchhhHHHHHHhhcC
Q psy14708 108 STIPNWQREFEAWTD 122 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~ 122 (513)
.++.||.+++.+|..
T Consensus 168 ~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 168 ALTTQMADDFVDYRL 182 (282)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 889999999999864
No 112
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=71.38 E-value=3.7 Score=40.38 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.1
Q ss_pred hhcccccccCCCCchhhHHHHHHh
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~ 91 (513)
.+|-+|.-+.|+|||..+-+++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 356788889999999988877643
No 113
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=70.35 E-value=2.1 Score=48.41 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=68.4
Q ss_pred CccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 28 ~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
..+|+|||.+++.|++... ..++||||+||+|||+++++++...
T Consensus 151 ~~~LrpyQ~eav~~~l~~~---------------------~~~~LLad~tGlGKTi~Ai~~i~~l--------------- 194 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRH---------------------APRVLLADEVGLGKTIEAGMILHQQ--------------- 194 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSS---------------------SCEEEECCCTTSCHHHHHHHHHHHH---------------
T ss_pred CCCCcHHHHHHHHHHHHhc---------------------CCCEEEECCCCCcHHHHHHHHHHHH---------------
Confidence 3689999999999997311 2358999999999999999877432
Q ss_pred CchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhcCcee
Q psy14708 108 STIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNV 187 (513)
Q Consensus 108 ~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~~l~~ 187 (513)
...+..+++|||||.+++.||.+|+.+++++++
T Consensus 195 -----------------------------------------------~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~l~v 227 (968)
T 3dmq_A 195 -----------------------------------------------LLSGAAERVLIIVPETLQHQWLVEMLRRFNLRF 227 (968)
T ss_dssp -----------------------------------------------HHTSSCCCEEEECCTTTHHHHHHHHHHHSCCCC
T ss_pred -----------------------------------------------HHhCCCCeEEEEeCHHHHHHHHHHHHHHhCCCE
Confidence 022345689999999999999999999889999
Q ss_pred EEEeccc
Q psy14708 188 IVYHGRR 194 (513)
Q Consensus 188 ~~~~g~~ 194 (513)
.+|+|..
T Consensus 228 ~v~~~~~ 234 (968)
T 3dmq_A 228 ALFDDER 234 (968)
T ss_dssp EECCHHH
T ss_pred EEEccch
Confidence 9998765
No 114
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=69.51 E-value=9.5 Score=33.54 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=15.7
Q ss_pred ccccccCCCCchhhHHHHHHh
Q psy14708 71 CILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 71 giLademGlGKT~~~iali~~ 91 (513)
-+|.-+.|+|||..+-++...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567778889999888776543
No 115
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=66.48 E-value=4 Score=38.37 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.0
Q ss_pred hhcccccccCCCCchhhHHHHHH
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~ 90 (513)
..|.+|.-+.|+|||..+-++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34578888999999998877653
No 116
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=64.26 E-value=3.1 Score=42.81 Aligned_cols=85 Identities=38% Similarity=0.662 Sum_probs=69.2
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
.+|+|||.+|+.||...+.. .+||||||+||+|||+++++++....
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~-------------------~~~~ilad~~GlGKT~~ai~~i~~~~--------------- 81 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKL-------------------GFGICLADDMGLGKTLQTIAVFSDAK--------------- 81 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHT-------------------TCCEEECCCTTSCHHHHHHHHHHHHH---------------
T ss_pred ccchHHHHHHHHHHHHHhhC-------------------CCCEEEEeCCCCcHHHHHHHHHHHHH---------------
Confidence 68999999999999754432 23588999999999999999874331
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhc-Ccee
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNV 187 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~-~l~~ 187 (513)
.....+++|||||.+++.||.+|+.+|. .+++
T Consensus 82 -----------------------------------------------~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 82 -----------------------------------------------KENELTPSLVICPLSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp -----------------------------------------------HTTCCSSEEEEECSTTHHHHHHHHHHHCTTSCE
T ss_pred -----------------------------------------------hcCCCCCEEEEccHHHHHHHHHHHHHHCCCceE
Confidence 1234578999999999999999999998 7888
Q ss_pred EEEeccc
Q psy14708 188 IVYHGRR 194 (513)
Q Consensus 188 ~~~~g~~ 194 (513)
.+++|..
T Consensus 115 ~~~~g~~ 121 (500)
T 1z63_A 115 AVFHEDR 121 (500)
T ss_dssp EECSSST
T ss_pred EEEecCc
Confidence 8888875
No 117
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.24 E-value=5.9 Score=38.86 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=17.6
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
..+|.-+.|+|||..+-+++...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 36677888999999887776544
No 118
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=62.81 E-value=6.2 Score=39.18 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.2
Q ss_pred hhcccccccCCCCchhhHHHHH
Q psy14708 68 TRNCILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali 89 (513)
.++-+|.-+.|+|||..+-++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3578889999999999887764
No 119
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=61.21 E-value=9.5 Score=36.25 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=16.3
Q ss_pred ccccccCCCCchhhHHHHHHh
Q psy14708 71 CILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 71 giLademGlGKT~~~iali~~ 91 (513)
-++.-+.|+|||..+-++...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 567778899999988877644
No 120
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=60.64 E-value=18 Score=33.32 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.3
Q ss_pred ccccccCCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 71 giLademGlGKT~~~iali~ 90 (513)
.+|.-+.|+|||..+-++..
T Consensus 32 vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 56778888899987766653
No 121
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=57.96 E-value=9.8 Score=39.11 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=40.4
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhcCCcEEEEcc
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTDLNVIVYHA 130 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~~~~~~~~~~ 130 (513)
.|.--.|.|||+++-+++.. ..+++|||+|+ ....+|.++++.|.|..+..+..
T Consensus 18 ~l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~ 72 (483)
T 3hjh_A 18 LLGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 72 (483)
T ss_dssp EEECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCC
T ss_pred EEeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeC
Confidence 34555788999887776643 24689999997 77889999999998866555444
No 122
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=54.53 E-value=3.5 Score=44.21 Aligned_cols=95 Identities=31% Similarity=0.493 Sum_probs=70.4
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
..|||||++||.||+..+...+ .....||||||+||+|||+++|+++......++.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~--------------~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~---------- 109 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRR--------------IENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD---------- 109 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSS--------------STTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT----------
T ss_pred hcccHHHHHHHHHHHHhhhccc--------------ccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc----------
Confidence 4799999999999986543110 0113579999999999999999998776544210
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecCCCccchHHHHHhhcC--ce
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD--LN 186 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~sll~qW~~E~~~~~~--l~ 186 (513)
.....+++|||||.+++.||.+|+.+|+. +.
T Consensus 110 -----------------------------------------------~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~ 142 (644)
T 1z3i_X 110 -----------------------------------------------CKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQ 142 (644)
T ss_dssp -----------------------------------------------SSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCC
T ss_pred -----------------------------------------------ccCCCCcEEEEecHHHHHHHHHHHHHHcCCCee
Confidence 11234678999999999999999999973 55
Q ss_pred eEEEeccc
Q psy14708 187 VIVYHGRR 194 (513)
Q Consensus 187 ~~~~~g~~ 194 (513)
++.++|..
T Consensus 143 ~~~~~~g~ 150 (644)
T 1z3i_X 143 PVAIDGGS 150 (644)
T ss_dssp EEEECSSC
T ss_pred EEEEeCCC
Confidence 66666543
No 123
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.90 E-value=7.5 Score=39.37 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=36.4
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
..+|.+|.-..|+|||..|-|++... ..+.+.+..+.++..|..|-.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~~~~vGese~ 261 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQLVQMYIGEGAK 261 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCSSCSSHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhhhhhcccchHHH
Confidence 36789999999999999998877654 3456777777888888765443
No 124
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.35 E-value=8.3 Score=34.43 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=23.8
Q ss_pred ccEEEEccccccCC---cchhHHHHHhhcc----cccEEEEeCCCC
Q psy14708 347 WRLCIIDEAHRLKN---RNCKLLEGLRLLH----LEHRVLLSGTPL 385 (513)
Q Consensus 347 ~~~vIvDEaH~~kn---~~s~~~~al~~l~----a~~r~~LTGTP~ 385 (513)
-.+|||||||.+-+ ......+.+..+. ...-++|.|.|.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 46899999999832 2222224444552 233678888883
No 125
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=51.26 E-value=49 Score=33.39 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=21.5
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
+++--.|.|||.++..++..+... ..++++++
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~--G~kVllv~ 135 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVC 135 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 344458999999999888766554 34555444
No 126
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=50.15 E-value=19 Score=34.32 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=15.5
Q ss_pred ccccccCCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 71 giLademGlGKT~~~iali~ 90 (513)
.+|.-+.|+|||..+-++..
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHH
Confidence 66778889999988766543
No 127
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.15 E-value=6.1 Score=39.56 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=37.2
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHhh
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~~ 120 (513)
..+|.+|.-..|+|||..|=|++... ..+.+.|..+.++..|..|-.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGese~~ 229 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGEGSRM 229 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccchHHHH
Confidence 35789999999999999998887654 34567777778888887664443
No 128
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.55 E-value=6.3 Score=39.97 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=36.2
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
..+|.+|.-..|+|||..|-|++... ..+.+.+..+.++..|..|-.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l~sk~~Gese~ 261 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGIVDKYIGESAR 261 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSSSHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhhccccchHHHH
Confidence 46789999999999999998887654 2356666667788888766443
No 129
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.30 E-value=7.9 Score=39.08 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=36.6
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
..+|.+|.-..|+|||..|-|++... ..+.+.+....++..|..|-.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~~s~l~sk~vGesek 262 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT-----SATFLRIVGSELIQKYLGDGPR 262 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEESGGGCCSSSSHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh-----CCCEEEEEHHHhhhccCchHHH
Confidence 46889999999999999998887654 3456677777888888766443
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=42.14 E-value=86 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.057 Sum_probs=19.6
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
+.---|.|||.++..++..+... .++++++
T Consensus 102 lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv 131 (433)
T 3kl4_A 102 LVGVQGSGKTTTAGKLAYFYKKR--GYKVGLV 131 (433)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHc--CCeEEEE
Confidence 34457999999988887666543 2344443
No 131
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.89 E-value=9 Score=38.71 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=34.3
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHH
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREF 117 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~ 117 (513)
..+|-+|.-..|+|||..|=|++... ..+++.|....++..|..|-
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~~~~~Ge~ 250 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFVHKYLGEG 250 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSCSHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhhccccchh
Confidence 46788999999999999998877654 24556666667777776553
No 132
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.82 E-value=9.1 Score=38.99 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=35.8
Q ss_pred hhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHHh
Q psy14708 67 LTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEA 119 (513)
Q Consensus 67 ~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~~ 119 (513)
..+|.+|.-..|+|||..|-|++... ..+.+.+....++..|..|-.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~sk~vGesek 289 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELVQKYVGEGAR 289 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCCCSSSHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhhcccCCHHHH
Confidence 46789999999999999998877554 2356666677788878765433
No 133
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=40.04 E-value=17 Score=32.25 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=24.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
-++.-.||+|||...|-.+......+ .+++++-|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 56788999999977776655444443 566766654
No 134
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.40 E-value=28 Score=38.44 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.5
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
+-+|.-+.|.|||..+-+++...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 35777888999999887776544
No 135
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=38.95 E-value=14 Score=37.03 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=66.1
Q ss_pred ccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCC
Q psy14708 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLS 108 (513)
Q Consensus 29 ~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~ 108 (513)
.+|+|||.+++.|++.. ++|++++||+|||++++.++.....
T Consensus 8 ~~l~~~Q~~~i~~~~~~------------------------~~ll~~~tG~GKT~~~~~~~~~~~~-------------- 49 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET------------------------NCLIVLPTGLGKTLIAMMIAEYRLT-------------- 49 (494)
T ss_dssp HCCCHHHHHHHHHGGGS------------------------CEEEECCTTSCHHHHHHHHHHHHHH--------------
T ss_pred CCccHHHHHHHHHHhhC------------------------CEEEEcCCCCCHHHHHHHHHHHHHh--------------
Confidence 57999999999999721 4899999999999999988744311
Q ss_pred chhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecC-CCccchHHHHHhhcCc--
Q psy14708 109 TIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTDL-- 185 (513)
Q Consensus 109 ~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-sll~qW~~E~~~~~~l-- 185 (513)
...+.+|||||. ++..||.+++.++.+.
T Consensus 50 -------------------------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 50 -------------------------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp -------------------------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred -------------------------------------------------cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 135789999997 7889999999999765
Q ss_pred -eeEEEeccccc
Q psy14708 186 -NVIVYHGRRKK 196 (513)
Q Consensus 186 -~~~~~~g~~~~ 196 (513)
++..++|....
T Consensus 81 ~~v~~~~g~~~~ 92 (494)
T 1wp9_A 81 EKIVALTGEKSP 92 (494)
T ss_dssp GGEEEECSCSCH
T ss_pred hheEEeeCCcch
Confidence 89999987543
No 136
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.61 E-value=83 Score=34.00 Aligned_cols=23 Identities=30% Similarity=0.357 Sum_probs=17.6
Q ss_pred cccccccCCCCchhhHHHHHHhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~ 92 (513)
+-+|.-+.|.|||..+-++....
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHHH
Confidence 35778888999999888776544
No 137
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=36.46 E-value=19 Score=32.03 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=20.8
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
..---|.|||.+++.+...+.+.+ ++++|
T Consensus 6 ~s~KGGvGKTT~a~~LA~~la~~g---~Vlli 34 (209)
T 3cwq_A 6 ASFKGGVGKTTTAVHLSAYLALQG---ETLLI 34 (209)
T ss_dssp EESSTTSSHHHHHHHHHHHHHTTS---CEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHHHhcC---CEEEE
Confidence 344457899999999987776654 66654
No 138
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=35.33 E-value=26 Score=37.39 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=34.2
Q ss_pred cccccCCCCchhhHHHHHHhhhhc-C-CCCCeEEecCC-CchhhHHHHHHhhcC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKT-G-IRGPFLVIAPL-STIPNWQREFEAWTD 122 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~-~-~~~~~liv~P~-~~~~~W~~E~~~~~~ 122 (513)
++--..|.|||.+.+.-+..+... + +...+|+|+.+ .....-.+.+.+..+
T Consensus 19 lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 19 LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 344567999999998877666554 2 56788999876 444445555665543
No 139
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=35.04 E-value=21 Score=41.01 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=36.7
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCC-CCeEEecCCCchhhHHHHHHhhcC
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIR-GPFLVIAPLSTIPNWQREFEAWTD 122 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~-~~~liv~P~~~~~~W~~E~~~~~~ 122 (513)
+---.|.|||.+++.-++.....+.. .++|++||.+...+-...+....+
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 33447999999999887776665554 799999999887775555555443
No 140
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.44 E-value=14 Score=33.38 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=19.9
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
--|.|||.+++.+...+.+.+ .++|+|
T Consensus 8 kGGvGKTt~a~~LA~~la~~g--~~Vlli 34 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDY--DKIYAV 34 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTC--SCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 447799999999987776654 566654
No 141
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=32.55 E-value=16 Score=34.58 Aligned_cols=43 Identities=9% Similarity=-0.081 Sum_probs=27.4
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHH
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQR 115 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~ 115 (513)
.+|.+|.-+.|+|||..+-+++... ..+++.+....+...|..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g 78 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAG 78 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCc
Confidence 4678888999999999988877655 234444444444444443
No 142
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=31.95 E-value=26 Score=30.47 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=21.7
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
+..---|.|||.+++.+...+.+. ..++++|=
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD 37 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRS--GYNIAVVD 37 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 334455789999999988777654 34566543
No 143
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=30.93 E-value=34 Score=32.46 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=24.5
Q ss_pred ccEEEEccccccCC----cchhHHHHHhhc---ccccEEEEeCCC
Q psy14708 347 WRLCIIDEAHRLKN----RNCKLLEGLRLL---HLEHRVLLSGTP 384 (513)
Q Consensus 347 ~~~vIvDEaH~~kn----~~s~~~~al~~l---~a~~r~~LTGTP 384 (513)
.-+||+||+|.+.. ........+..+ ....++++||++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 34788999999864 222334444443 246788999976
No 144
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=30.49 E-value=27 Score=33.49 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.1
Q ss_pred CCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 78 GLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 78 GlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
|.|||.+++-|.+.+-+.+ +++++|
T Consensus 58 GVGKTTtavNLA~aLA~~G--kkVllI 82 (314)
T 3fwy_A 58 GIGKSTTSSNLSAAFSILG--KRVLQI 82 (314)
T ss_dssp TSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred ccCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 6799999998887776654 455543
No 145
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=30.48 E-value=38 Score=30.03 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=22.4
Q ss_pred cccEEEEccccccCCcchhHHHHHhhc-ccccEEEEeC
Q psy14708 346 NWRLCIIDEAHRLKNRNCKLLEGLRLL-HLEHRVLLSG 382 (513)
Q Consensus 346 ~~~~vIvDEaH~~kn~~s~~~~al~~l-~a~~r~~LTG 382 (513)
..+.|+|||+|.+ .. ....+..+ .....++++|
T Consensus 91 ~~DvIlIDEaQFf-k~---~ve~~~~L~~~gk~VI~~G 124 (195)
T 1w4r_A 91 GVAVIGIDEGQFF-PD---IVEFCEAMANAGKTVIVAA 124 (195)
T ss_dssp TCSEEEESSGGGC-TT---HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEchhhh-HH---HHHHHHHHHHCCCeEEEEe
Confidence 3689999999999 32 33333444 4556788877
No 146
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=30.44 E-value=24 Score=33.81 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=27.5
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhH
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNW 113 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W 113 (513)
.+|-+|.-+.|+|||..+-++.... ...+.+.+....+...|
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~----~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT----TSCEEEEEECCSSCCSS
T ss_pred CceEEEECCCCccHHHHHHHHHHHc----CCCcEEEEEhHHHHhhh
Confidence 4678899999999999988876554 12234444444444444
No 147
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=30.09 E-value=45 Score=29.38 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=41.2
Q ss_pred CcEEEecHHHHHhchhh--hccccccEEEEccccccCCcch---hHHHHHhhcc-cccEEEEeCCCCCC
Q psy14708 325 FHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRNC---KLLEGLRLLH-LEHRVLLSGTPLQN 387 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~s---~~~~al~~l~-a~~r~~LTGTP~~n 387 (513)
.+++++|++.+...... +..-++++||+||||.+-.... .....+..+. ....+++||||..+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTT
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHH
Confidence 47999999988764322 2334678999999999854211 1222233333 45689999999654
No 148
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=29.15 E-value=53 Score=33.14 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=30.1
Q ss_pred hcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHH
Q psy14708 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQRE 116 (513)
Q Consensus 69 ~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E 116 (513)
+|.+|.-..|+|||..+-++...... ..+.+.+....+...|..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~~~~~~~~ 108 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEVYSTEIKK 108 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGGCCSSSCH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHHHHHhhhh
Confidence 56788899999999999888766422 2455555555555555443
No 149
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=29.06 E-value=28 Score=31.98 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=22.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
++..---|.|||.+++.+...+. . ..++++|
T Consensus 31 ~v~s~kGGvGKTT~a~~LA~~la-~--g~~Vlli 61 (267)
T 3k9g_A 31 TIASIKGGVGKSTSAIILATLLS-K--NNKVLLI 61 (267)
T ss_dssp EECCSSSSSCHHHHHHHHHHHHT-T--TSCEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHH-C--CCCEEEE
Confidence 45556668899999999887765 3 3566654
No 150
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=28.30 E-value=60 Score=28.74 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=35.2
Q ss_pred hhhhccccccEEEEccccccCC----cchhHHHHHhhcccccEEEEeCCCCCCCHHHHHHHHhhh
Q psy14708 339 CLELKDFNWRLCIIDEAHRLKN----RNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFL 399 (513)
Q Consensus 339 ~~~l~~~~~~~vIvDEaH~~kn----~~s~~~~al~~l~a~~r~~LTGTP~~n~~~dl~~ll~~L 399 (513)
...+..-.+|+||+||.-+.-+ +-......+..-....-+++||-- -+.+|..++.++
T Consensus 113 ~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~---ap~~l~e~AD~V 174 (196)
T 1g5t_A 113 KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG---CHRDILDLADTV 174 (196)
T ss_dssp HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS---CCHHHHHHCSEE
T ss_pred HHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC---CcHHHHHhCcce
Confidence 3345566799999999965311 222334444444566789999954 355555555543
No 151
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=28.16 E-value=33 Score=30.82 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=21.6
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
++..---|.|||.+++.+...+.+. ...++++|
T Consensus 8 ~v~s~kGGvGKTt~a~~LA~~la~~-~g~~Vlli 40 (245)
T 3ea0_A 8 GFVSAKGGDGGSCIAANFAFALSQE-PDIHVLAV 40 (245)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEE
T ss_pred EEECCCCCcchHHHHHHHHHHHHhC-cCCCEEEE
Confidence 3444455889999999887776554 13455554
No 152
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=28.03 E-value=38 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=24.2
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
.|..-.-|.|||.+++.++..+.+.+ .+++++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcc
Confidence 34455678899999999988776653 56766543
No 153
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=27.32 E-value=47 Score=28.69 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhc-CCCceEEEEEecCCHHHHHHHHHHHHHHhhh
Q psy14708 422 EVNKLQLLLKPMMLRRLKEDVEKS-IAPKEETVVEVELTNIQKKYYRGILERNFSF 476 (513)
Q Consensus 422 ~~~~l~~~l~~~~~rrtk~~v~~~-LP~~~~~~i~v~ls~~q~~~Y~~l~~~~~~~ 476 (513)
.+..+...+..++.+|.+..+..- +++.. ..+.=.|||+|+.+|..+..-...+
T Consensus 113 elk~~~~~l~~L~~~Ri~KIv~la~~~~~~-~eil~rLTpEEk~iy~~l~~~i~~w 167 (171)
T 3anw_B 113 KLANLRKKLRDLKLIRFNKILKAVMLRPNS-LELLSRLAPEERRIYLQMSKIRNEW 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--CC-HHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 356777888999999999886543 44433 3334579999999999987654433
No 154
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=27.26 E-value=34 Score=31.42 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=19.2
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
-=|.|||.+++.+...+.+. ..++++|
T Consensus 9 KGGvGKTT~a~nLA~~la~~--G~~Vlli 35 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAM--GKTIMVV 35 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTT--TCCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHHC--CCcEEEE
Confidence 44789999999888776654 3466653
No 155
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=27.01 E-value=33 Score=32.84 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=24.1
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
.+..---|.|||.++.++....-+. ..++|+|--
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeC
Confidence 3445566889999999988776655 457776654
No 156
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=26.98 E-value=31 Score=34.80 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=25.2
Q ss_pred hhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHH
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQRE 116 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E 116 (513)
.+|-+|.-..|+|||..+-++.... ...+.+.+....++..|..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~----~~~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSKWLGE 211 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC----CSSEEEEECCC---------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc----CCCCEEEEeHHHHHhhhcch
Confidence 4678899999999999988876554 12344555555565555543
No 157
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=26.84 E-value=45 Score=38.24 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=38.3
Q ss_pred ccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC-CchhhHHHHHHhhcCCcEEEEcce
Q psy14708 73 LADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTDLNVIVYHAT 131 (513)
Q Consensus 73 LademGlGKT~~~iali~~~~~~~~~~~~liv~P~-~~~~~W~~E~~~~~~~~~~~~~~~ 131 (513)
|.--.|.|||+.+.+++... .+++|||+|. ....+|.+|+..|.+..+..+..-
T Consensus 22 l~G~~gs~ka~~~a~l~~~~-----~~p~lvv~~~~~~A~~l~~el~~f~~~~V~~fP~~ 76 (1151)
T 2eyq_A 22 LGELTGAACATLVAEIAERH-----AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW 76 (1151)
T ss_dssp BCCCCTTHHHHHHHHHHHSS-----SSEEEEEESSHHHHHHHHHHHGGGCSSCEEECCCC
T ss_pred EeCCchHHHHHHHHHHHHhh-----CCCEEEEeCCHHHHHHHHHHHHhhcCCcEEEeccc
Confidence 33446779998777655321 3579999997 788899999999974445555544
No 158
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=26.73 E-value=28 Score=31.61 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.2
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~ 96 (513)
-|-+-+.|.|||+.+.+++..+.+.+
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 35566789999999999998887765
No 159
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=26.44 E-value=34 Score=33.20 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
.+..---|.|||.++.++....-+. ..++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 3444556889999999988776655 45676655
No 160
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=25.55 E-value=37 Score=31.99 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=19.6
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
-=|.|||.+++.+...+.+.+ .++++|
T Consensus 49 KGGvGKTT~a~nLA~~La~~G--~~Vlli 75 (307)
T 3end_A 49 KGGIGKSTTSSNLSAAFSILG--KRVLQI 75 (307)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CCCccHHHHHHHHHHHHHHCC--CeEEEE
Confidence 567899999999887776553 455554
No 161
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=25.52 E-value=37 Score=31.63 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=19.3
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
--|.|||.+++.+...+.+. ..++++|
T Consensus 10 KGGvGKTT~a~nLA~~La~~--G~rVlli 36 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEM--GKKVMIV 36 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHC--CCeEEEE
Confidence 45789999999988777654 3456543
No 162
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=25.33 E-value=68 Score=30.46 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=32.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFE 118 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~ 118 (513)
.+|+-..|+|||.-++-++......+ .+++++.-.--..+....+.
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHH
Confidence 67788899999998888776554443 67888877655555554443
No 163
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=25.00 E-value=31 Score=31.68 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=21.6
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~ 96 (513)
-|-+-+.|.|||+.+++++..+.+.+
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 45667889999999999998887765
No 164
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=24.51 E-value=37 Score=33.52 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=22.7
Q ss_pred ccccccCCCCchhhHHHHHHhhhhc----CCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKT----GIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~----~~~~~~liv 104 (513)
++..--=|.|||.+++.+...+-.. ....++|+|
T Consensus 112 av~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 112 FISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp EECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 4555566899999999988776542 234566554
No 165
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.29 E-value=50 Score=30.02 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=20.4
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~ 96 (513)
-++..-.|.|||..++.+.......|
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 34566778899999999988777664
No 166
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=23.91 E-value=63 Score=31.15 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=42.0
Q ss_pred CcEEEecHHHHHhchhh--hccccccEEEEccccccCCcchhHH---HHHhhc-ccccEEEEeCCCCCC
Q psy14708 325 FHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKNRNCKLL---EGLRLL-HLEHRVLLSGTPLQN 387 (513)
Q Consensus 325 ~~vvitt~~~~~~~~~~--l~~~~~~~vIvDEaH~~kn~~s~~~---~al~~l-~a~~r~~LTGTP~~n 387 (513)
.+|+++|++.+...... +...++++||+||||.+.+...... ..+..+ .....+++||||...
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH
Confidence 57999999998764332 3344789999999999966322111 122222 245689999999754
No 167
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=23.67 E-value=43 Score=31.31 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=19.2
Q ss_pred cCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 76 EMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 76 emGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
--|.|||.+++.+...+.+. ..++|+|
T Consensus 45 KGGvGKTT~a~nLA~~la~~--G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKL--NLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhC--CCeEEEE
Confidence 45789999999988766554 3466653
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=23.59 E-value=57 Score=31.37 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=30.2
Q ss_pred chhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhh
Q psy14708 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAV 92 (513)
Q Consensus 31 Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~ 92 (513)
-++.++.++..+......+.. ..++-+|.-+.|+|||..+-++....
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~---------------~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKI---------------AGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC---------------TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCC---------------CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345666666666654443321 02346788889999999998877655
No 169
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=23.10 E-value=35 Score=31.50 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=21.5
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcC
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTG 96 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~ 96 (513)
-|-+-+.|.|||+.+++++..+.+.+
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 45667889999999999998887765
No 170
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=22.96 E-value=55 Score=31.11 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=15.4
Q ss_pred ccccccCCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVD 90 (513)
Q Consensus 71 giLademGlGKT~~~iali~ 90 (513)
-++.-+.|.|||..+.+++.
T Consensus 21 ~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 21 ILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEECSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46677888899988887753
No 171
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=22.87 E-value=51 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=23.5
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
++.+-.-|.|||.+++.+...+.+. ..++++|=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD 38 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGDR--GRKVLAVD 38 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 3445566889999999988777654 35676654
No 172
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=22.15 E-value=47 Score=32.11 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
+..---|.|||.++.++.....+. .+++++|-
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid 51 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLS 51 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 334455789999999987776554 35666654
No 173
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=21.97 E-value=29 Score=34.97 Aligned_cols=79 Identities=22% Similarity=0.419 Sum_probs=62.9
Q ss_pred cCCccchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 26 KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 26 ~~~~~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
..+.+|+|||.+++.+++.. ..++|+++||+|||.+++.++..
T Consensus 89 ~~~~~l~~~Q~~ai~~i~~~-----------------------~~~ll~~~TGsGKT~~~l~~i~~-------------- 131 (472)
T 2fwr_A 89 DAEISLRDYQEKALERWLVD-----------------------KRGCIVLPTGSGKTHVAMAAINE-------------- 131 (472)
T ss_dssp CCCCCBCHHHHHHHHHHTTT-----------------------TEEEEECCTTSCHHHHHHHHHHH--------------
T ss_pred cCCCCcCHHHHHHHHHHHhc-----------------------CCEEEEeCCCCCHHHHHHHHHHH--------------
Confidence 34568999999999987521 23889999999999999886531
Q ss_pred CCCchhhHHHHHHhhcCCcEEEEcceeeEEecccchhhhhhhhhhhhhhhccccCCCeEEEecC-CCccchHHHHHhhcC
Q psy14708 106 PLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTD 184 (513)
Q Consensus 106 P~~~~~~W~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-sll~qW~~E~~~~~~ 184 (513)
..+++||+||. +|+.||.+++.+| +
T Consensus 132 -----------------------------------------------------~~~~~Lvl~P~~~L~~Q~~~~~~~~-~ 157 (472)
T 2fwr_A 132 -----------------------------------------------------LSTPTLIVVPTLALAEQWKERLGIF-G 157 (472)
T ss_dssp -----------------------------------------------------HCSCEEEEESSHHHHHHHHHHGGGG-C
T ss_pred -----------------------------------------------------cCCCEEEEECCHHHHHHHHHHHHhC-C
Confidence 14689999999 8889999999994 6
Q ss_pred ce-eEEEecccc
Q psy14708 185 LN-VIVYHGRRK 195 (513)
Q Consensus 185 l~-~~~~~g~~~ 195 (513)
.+ +.+++|...
T Consensus 158 ~~~v~~~~g~~~ 169 (472)
T 2fwr_A 158 EEYVGEFSGRIK 169 (472)
T ss_dssp GGGEEEBSSSCB
T ss_pred CcceEEECCCcC
Confidence 77 888887654
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=21.97 E-value=39 Score=29.37 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.0
Q ss_pred cccccccCCCCchhhHHHHHHhhhh
Q psy14708 70 NCILADEMGLGKTIQSLTFVDAVFK 94 (513)
Q Consensus 70 GgiLademGlGKT~~~iali~~~~~ 94 (513)
+-+|.-+.|+|||..+-++......
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667778899999998887665543
No 175
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=21.84 E-value=34 Score=31.30 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=22.5
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEe
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVI 104 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv 104 (513)
++..-.-|.|||.+++.+...+.+. ..++++|
T Consensus 10 ~v~s~kGGvGKTt~a~~LA~~la~~--g~~Vlli 41 (257)
T 1wcv_1 10 ALANQKGGVGKTTTAINLAAYLARL--GKRVLLV 41 (257)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--CCCEEEE
Confidence 3444556789999999988777654 3567665
No 176
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=21.81 E-value=47 Score=32.31 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=23.6
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCC
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPL 107 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~ 107 (513)
+..---|.|||.++.++...+-.....+++|+|-..
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 344455789999999988776521234677776543
No 177
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=21.66 E-value=48 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=21.2
Q ss_pred ccCCCCchhhHHHHHHhhhhcCCCCCeEEecC
Q psy14708 75 DEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAP 106 (513)
Q Consensus 75 demGlGKT~~~iali~~~~~~~~~~~~liv~P 106 (513)
---|.|||.++.++....-......++|+|--
T Consensus 25 gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 25 GKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp CSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34578999999998777652123456766553
No 178
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.40 E-value=57 Score=29.70 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
++..-.-|.|||.+++.+...+.+. ..++++|=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQL--GHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 3455566889999999988777654 35666653
No 179
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=21.38 E-value=51 Score=35.54 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=42.0
Q ss_pred cchhhHHhhHHHHHhhhcCCccccccccCCCCcchhhhhhcccccccCCCCchhhHHHHHHhhhhc--CCCCCeEEecCC
Q psy14708 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKT--GIRGPFLVIAPL 107 (513)
Q Consensus 30 ~Lrp~Q~~~v~~m~~~~~~~~~~~l~~e~g~gkt~~~~~~GgiLademGlGKT~~~iali~~~~~~--~~~~~~liv~P~ 107 (513)
.|-|.|.++|... .+ . .++--..|.|||.+.+.-++.+... .+...+|+|+..
T Consensus 11 ~Ln~~Q~~av~~~------~g---------~----------~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFT 65 (724)
T 1pjr_A 11 HLNKEQQEAVRTT------EG---------P----------LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65 (724)
T ss_dssp TSCHHHHHHHHCC------SS---------C----------EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred hCCHHHHHHHhCC------CC---------C----------EEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEecc
Confidence 5889999998532 11 1 3444567999999998877766653 245688998876
Q ss_pred Cchh-hHHHHHHhh
Q psy14708 108 STIP-NWQREFEAW 120 (513)
Q Consensus 108 ~~~~-~W~~E~~~~ 120 (513)
.-.. .-.+.+.+.
T Consensus 66 nkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 66 NKAAREMRERVQSL 79 (724)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4333 334444444
No 180
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.92 E-value=81 Score=28.08 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=30.0
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhhHHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFE 118 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~W~~E~~ 118 (513)
.+++-+.|+|||.-++-++...... ...+++++.-..-..+..+.+.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCCHHHHHHHHH
Confidence 5788899999999988876543222 1346777765544444444443
No 181
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=20.91 E-value=56 Score=31.53 Aligned_cols=41 Identities=22% Similarity=0.061 Sum_probs=31.9
Q ss_pred cccccCCCCchhhHHHHHHhhhhcCCCCCeEEecCCCchhh
Q psy14708 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPN 112 (513)
Q Consensus 72 iLademGlGKT~~~iali~~~~~~~~~~~~liv~P~~~~~~ 112 (513)
.|+-+.|.|||..++-+++...+.+....++.+...+-+.+
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 57888999999999998887776655677888887655554
No 182
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.80 E-value=52 Score=31.23 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=24.0
Q ss_pred ccEEEEccccccCCc-chhHHHHHhhc---ccccEEEEeCCCC
Q psy14708 347 WRLCIIDEAHRLKNR-NCKLLEGLRLL---HLEHRVLLSGTPL 385 (513)
Q Consensus 347 ~~~vIvDEaH~~kn~-~s~~~~al~~l---~a~~r~~LTGTP~ 385 (513)
.-+||+||+|.+... .......+..+ .....+++||++.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~ 180 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEM 180 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCch
Confidence 347889999998542 12222333333 2366889999863
No 183
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=20.70 E-value=41 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.9
Q ss_pred hhcccccccCCCCchhhHHHHHHh
Q psy14708 68 TRNCILADEMGLGKTIQSLTFVDA 91 (513)
Q Consensus 68 ~~GgiLademGlGKT~~~iali~~ 91 (513)
.+|.+|.-+.|+|||..+-++...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 345778889999999998877654
No 184
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=20.43 E-value=62 Score=29.60 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=23.4
Q ss_pred ccccccCCCCchhhHHHHHHhhhhcCCCCCeEEec
Q psy14708 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105 (513)
Q Consensus 71 giLademGlGKT~~~iali~~~~~~~~~~~~liv~ 105 (513)
++..-.-|.|||.+++.+...+.+.+ .++++|=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~~G--~~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYARQG--KKVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 45556668899999999887776553 4666643
No 185
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=20.30 E-value=52 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=14.1
Q ss_pred ccccccCCCCchhhHHHHH
Q psy14708 71 CILADEMGLGKTIQSLTFV 89 (513)
Q Consensus 71 giLademGlGKT~~~iali 89 (513)
-+|.-+.|+|||..|-++.
T Consensus 30 vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp EEEEEETTCCHHHHHGGGC
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 5677788889998776653
Done!