Your job contains 1 sequence.
>psy14708
MSLIKKPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGL
GKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW
TDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFE
AWTDLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLT
FGWGRWKEFLANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRN
MLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKN
RNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTE
SEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKG
TTSANVPNLMNTMMELRKCCIHPYLLNGKTYLL
The BLAST search returned 11 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14708
(513 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086902 - symbol:kis "kismet" species:7227 "Drosop... 721 2.4e-109 3
UNIPROTKB|E1BS47 - symbol:CHD7 "Chromodomain-helicase-DNA... 634 3.4e-100 3
UNIPROTKB|F1NSG3 - symbol:CHD7 "Chromodomain-helicase-DNA... 634 8.7e-99 3
UNIPROTKB|F1NVT7 - symbol:CHD6 "Uncharacterized protein" ... 631 1.0e-98 3
UNIPROTKB|F1PWD8 - symbol:CHD7 "Uncharacterized protein" ... 639 1.2e-98 3
RGD|1311921 - symbol:Chd7 "chromodomain helicase DNA bind... 636 2.4e-98 3
MGI|MGI:2444748 - symbol:Chd7 "chromodomain helicase DNA ... 636 2.4e-98 3
UNIPROTKB|F1RT88 - symbol:CHD7 "Uncharacterized protein" ... 636 2.4e-98 3
UNIPROTKB|Q9P2D1 - symbol:CHD7 "Chromodomain-helicase-DNA... 636 2.4e-98 3
UNIPROTKB|E1BPM4 - symbol:CHD7 "Uncharacterized protein" ... 635 2.9e-98 3
UNIPROTKB|Q06A37 - symbol:CHD7 "Chromodomain-helicase-DNA... 634 3.2e-98 3
UNIPROTKB|F1NLW6 - symbol:CHD6 "Uncharacterized protein" ... 631 2.4e-97 3
UNIPROTKB|F1NLV5 - symbol:CHD6 "Uncharacterized protein" ... 631 2.4e-97 3
UNIPROTKB|H3BTW3 - symbol:CHD9 "Chromodomain-helicase-DNA... 611 3.2e-97 3
UNIPROTKB|F1PTH3 - symbol:CHD6 "Uncharacterized protein" ... 626 1.3e-96 3
UNIPROTKB|J9P0F6 - symbol:CHD6 "Uncharacterized protein" ... 626 1.3e-96 3
UNIPROTKB|Q8TD26 - symbol:CHD6 "Chromodomain-helicase-DNA... 626 1.3e-96 3
UNIPROTKB|F1N734 - symbol:CHD6 "Uncharacterized protein" ... 624 2.1e-96 3
ZFIN|ZDB-GENE-030131-497 - symbol:chd9 "chromodomain heli... 609 3.9e-96 3
ZFIN|ZDB-GENE-070912-179 - symbol:chd7 "chromodomain heli... 616 3.9e-96 3
MGI|MGI:1924001 - symbol:Chd9 "chromodomain helicase DNA ... 612 4.0e-95 3
UNIPROTKB|E1BS48 - symbol:CHD9 "Uncharacterized protein" ... 612 5.4e-95 3
UNIPROTKB|E2RDK8 - symbol:CHD9 "Uncharacterized protein" ... 611 6.6e-95 3
RGD|1594200 - symbol:LOC680231 "similar to chromodomain h... 610 1.0e-94 3
UNIPROTKB|Q3L8U1 - symbol:CHD9 "Chromodomain-helicase-DNA... 611 1.4e-94 3
UNIPROTKB|E1BDZ3 - symbol:CHD9 "Uncharacterized protein" ... 611 2.2e-94 3
UNIPROTKB|H0YJG4 - symbol:CHD8 "Chromodomain-helicase-DNA... 628 2.5e-83 2
WB|WBGene00007053 - symbol:chd-7 species:6239 "Caenorhabd... 543 4.8e-83 3
ZFIN|ZDB-GENE-030131-6320 - symbol:chd8 "chromodomain hel... 623 3.6e-82 3
UNIPROTKB|B5DE69 - symbol:chd8 "Chromodomain-helicase-DNA... 628 3.8e-80 2
UNIPROTKB|E2QUR1 - symbol:CHD8 "Uncharacterized protein" ... 628 3.9e-80 2
UNIPROTKB|Q9HCK8 - symbol:CHD8 "Chromodomain-helicase-DNA... 628 6.4e-80 2
RGD|620696 - symbol:Chd8 "chromodomain helicase DNA bindi... 628 1.3e-79 2
MGI|MGI:1915022 - symbol:Chd8 "chromodomain helicase DNA ... 628 1.7e-79 2
UNIPROTKB|F1MLB2 - symbol:CHD8 "Uncharacterized protein" ... 622 2.6e-79 2
UNIPROTKB|F1S8J5 - symbol:CHD8 "Uncharacterized protein" ... 622 2.7e-79 2
UNIPROTKB|E2QUS7 - symbol:CHD8 "Uncharacterized protein" ... 622 2.8e-79 2
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 505 2.5e-77 3
UNIPROTKB|K7EMY3 - symbol:CHD5 "Chromodomain-helicase-DNA... 396 1.5e-61 3
UNIPROTKB|J9NRN3 - symbol:CHD5 "Uncharacterized protein" ... 396 3.0e-61 3
UNIPROTKB|F2Z2R5 - symbol:CHD5 "Chromodomain-helicase-DNA... 396 3.5e-61 3
UNIPROTKB|F1SSZ2 - symbol:CHD5 "Uncharacterized protein" ... 396 1.5e-60 3
UNIPROTKB|F1RIM3 - symbol:CHD5 "Uncharacterized protein" ... 396 1.7e-60 3
UNIPROTKB|E2R1M3 - symbol:CHD5 "Uncharacterized protein" ... 396 2.2e-60 3
UNIPROTKB|F1MFF9 - symbol:Bt.62145 "Uncharacterized prote... 396 2.4e-60 3
UNIPROTKB|Q8TDI0 - symbol:CHD5 "Chromodomain-helicase-DNA... 396 2.9e-60 3
RGD|1582725 - symbol:Chd5 "chromodomain helicase DNA bind... 395 3.6e-60 3
ZFIN|ZDB-GENE-041111-187 - symbol:chd4a "chromodomain hel... 383 6.6e-59 3
UNIPROTKB|F1NH79 - symbol:CHD4 "Uncharacterized protein" ... 378 2.1e-58 3
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 377 3.5e-58 3
UNIPROTKB|F1SLR5 - symbol:CHD4 "Uncharacterized protein" ... 377 3.5e-58 3
UNIPROTKB|E2RHA0 - symbol:CHD4 "Uncharacterized protein" ... 377 3.5e-58 3
UNIPROTKB|Q14839 - symbol:CHD4 "Chromodomain-helicase-DNA... 377 3.5e-58 3
MGI|MGI:1344380 - symbol:Chd4 "chromodomain helicase DNA ... 377 3.5e-58 3
UNIPROTKB|E9PU01 - symbol:Chd4 "Protein Chd4" species:101... 377 3.5e-58 3
UNIPROTKB|J9NW81 - symbol:CHD4 "Uncharacterized protein" ... 377 3.7e-58 3
UNIPROTKB|F1N3F6 - symbol:CHD4 "Uncharacterized protein" ... 377 3.7e-58 3
UNIPROTKB|F1LM59 - symbol:Chd4 "Protein Chd4" species:101... 377 3.8e-58 3
DICTYBASE|DDB_G0293012 - symbol:DDB_G0293012 "CHR group p... 415 4.7e-58 3
ZFIN|ZDB-GENE-030131-4532 - symbol:chd4b "chromodomain he... 373 3.4e-57 3
RGD|1311923 - symbol:Chd3 "chromodomain helicase DNA bind... 385 5.0e-57 3
UNIPROTKB|F1N544 - symbol:CHD3 "Uncharacterized protein" ... 385 5.8e-57 3
UNIPROTKB|E2RTI2 - symbol:CHD3 "Uncharacterized protein" ... 385 5.8e-57 3
UNIPROTKB|Q12873 - symbol:CHD3 "Chromodomain-helicase-DNA... 385 5.8e-57 3
UNIPROTKB|F1ST12 - symbol:CHD3 "Uncharacterized protein" ... 385 5.9e-57 3
UNIPROTKB|F1LPP7 - symbol:Chd3 "Protein Chd3" species:101... 385 6.1e-57 3
UNIPROTKB|F1M7Q0 - symbol:Chd3 "Protein Chd3" species:101... 385 6.5e-57 3
UNIPROTKB|E9PG89 - symbol:CHD3 "Chromodomain-helicase-DNA... 385 6.5e-57 3
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 376 5.9e-56 3
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 351 1.3e-53 3
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 351 1.3e-53 3
WB|WBGene00000482 - symbol:chd-3 species:6239 "Caenorhabd... 356 3.8e-53 3
UNIPROTKB|Q22516 - symbol:chd-3 "Chromodomain-helicase-DN... 356 3.8e-53 3
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 364 8.6e-53 3
FB|FBgn0262519 - symbol:Mi-2 species:7227 "Drosophila mel... 351 1.9e-52 3
UNIPROTKB|I3LDG1 - symbol:LOC100738357 "Uncharacterized p... 543 2.1e-52 1
TAIR|locus:2040184 - symbol:PKL "PICKLE" species:3702 "Ar... 362 1.2e-51 3
UNIPROTKB|F1NH78 - symbol:F1NH78 "Uncharacterized protein... 396 5.0e-51 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 352 2.8e-48 2
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 328 1.3e-47 3
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 333 1.4e-47 3
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 328 4.8e-47 3
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 328 1.1e-46 3
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 328 1.5e-46 3
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 328 1.5e-46 3
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 328 1.5e-46 3
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 328 1.5e-46 3
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 328 1.6e-46 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 328 2.0e-46 3
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 323 1.0e-45 3
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 336 1.3e-45 4
CGD|CAL0001390 - symbol:orf19.3035 species:5476 "Candida ... 330 4.4e-45 3
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 342 1.8e-43 3
UNIPROTKB|F1P0A4 - symbol:SMARCA5 "Uncharacterized protei... 313 1.1e-42 3
ASPGD|ASPL0000052010 - symbol:AN1255 species:162425 "Emer... 319 2.8e-42 3
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 309 4.9e-42 3
RGD|1306794 - symbol:Chd1 "chromodomain helicase DNA bind... 328 7.3e-42 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 322 7.3e-42 3
UNIPROTKB|H9L0N0 - symbol:H9L0N0 "Uncharacterized protein... 326 1.0e-41 2
WB|WBGene00010369 - symbol:chd-1 species:6239 "Caenorhabd... 301 1.1e-41 3
WARNING: Descriptions of 392 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 721 (258.9 bits), Expect = 2.4e-109, Sum P(3) = 2.4e-109
Identities = 136/211 (64%), Positives = 162/211 (76%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
S+ M+Q+YE +++ + + +KE KF+VLITTFE+I++D ++LK FNWRLC+IDEAHR
Sbjct: 2113 SKQMIQDYEYYYKTESGKVLKEP--IKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHR 2170
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK SGTPLQNN++ELFSLLNFLEP QFS+ E FMSEFG L
Sbjct: 2171 LKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGSL 2230
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+TE EVN +DVEKS+APKEET++EVELTNIQKKYYRGILE+NFSFL
Sbjct: 2231 RTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFL 2290
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
KGTTSAN+PNLMNTMMELRKCCIHPYLLNG
Sbjct: 2291 KKGTTSANIPNLMNTMMELRKCCIHPYLLNG 2321
Score = 293 (108.2 bits), Expect = 5.8e-96, Sum P(2) = 5.8e-96
Identities = 53/64 (82%), Positives = 59/64 (92%)
Query: 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
T NCILADEMGLGKTIQSLTFV +V++ GIRGPFLVIAPLSTIPNWQREFE WTD+NV+V
Sbjct: 2047 THNCILADEMGLGKTIQSLTFVHSVYEYGIRGPFLVIAPLSTIPNWQREFEGWTDMNVVV 2106
Query: 128 YHAT 131
YH +
Sbjct: 2107 YHGS 2110
Score = 252 (93.8 bits), Expect = 2.4e-109, Sum P(3) = 2.4e-109
Identities = 47/63 (74%), Positives = 51/63 (80%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K KK+P W KLEK+PVYK N+LR YQLEGLNWL FSW+N NCILADEMGLGKTIQ
Sbjct: 2004 KSKKRPHPELWKKLEKTPVYKGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQ 2063
Query: 66 SLT 68
SLT
Sbjct: 2064 SLT 2066
Score = 202 (76.2 bits), Expect = 2.4e-109, Sum P(3) = 2.4e-109
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
FV +V++ GIRGPFLVIAPLSTIPNWQREFE WTD+NV+VYHG
Sbjct: 2067 FVHSVYEYGIRGPFLVIAPLSTIPNWQREFEGWTDMNVVVYHG 2109
Score = 190 (71.9 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 192 GRRKKLSRRDKERLRLKYVAADYVPKD-------G--EVLYGNWSRSECFKVERGLLTFG 242
G R + + ++R R K +Y+P++ G E+ YGNW++SECFKVE+GLL+FG
Sbjct: 2651 GLRSRRRKEKRDRAREKKGNDEYIPRERDALAALGLEEIQYGNWAKSECFKVEKGLLSFG 2710
Query: 243 WGRWKEFLANNEFRNGWTEEYVEE 266
WGRW E L +F+ GW + VE+
Sbjct: 2711 WGRWSELLELGQFKRGWRDVDVED 2734
Score = 38 (18.4 bits), Expect = 7.4e-87, Sum P(3) = 7.4e-87
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 96 GIRGPFLVIAPLSTI 110
G +GP V AP++T+
Sbjct: 483 GAKGPAPVAAPVNTL 497
Score = 38 (18.4 bits), Expect = 4.5e-69, Sum P(2) = 4.5e-69
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 158 GIRGPFLVIAPLSTI 172
G +GP V AP++T+
Sbjct: 483 GAKGPAPVAAPVNTL 497
Score = 38 (18.4 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 279 KSFSPTMSSGTDGLKSAS 296
KS S SGT G SAS
Sbjct: 4387 KSGSSNSGSGTGGSSSAS 4404
Score = 37 (18.1 bits), Expect = 4.0e-46, Sum P(4) = 4.0e-46
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 442 VEKSIAPKEETVVEVELTNIQKK 464
+E + K ETV+E E+ + KK
Sbjct: 3871 IESEPSEKSETVLEPEVA-VPKK 3892
Score = 37 (18.1 bits), Expect = 4.0e-46, Sum P(4) = 4.0e-46
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 279 KSFSPTMSSGTDGLKSASASRNMLQEYE 306
KS + + SS T SAS + Q+ +
Sbjct: 4804 KSQAQSQSSATSSSSSASKKKQQQQQQQ 4831
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 634 (228.2 bits), Expect = 3.4e-100, Sum P(3) = 3.4e-100
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 235 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 292
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 293 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF 352
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 353 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 412
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 413 AFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 446
Score = 271 (100.5 bits), Expect = 2.0e-86, Sum P(2) = 2.0e-86
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
TRNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+V
Sbjct: 172 TRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVV 231
Query: 128 YHAT 131
YH +
Sbjct: 232 YHGS 235
Score = 246 (91.7 bits), Expect = 3.4e-100, Sum P(3) = 3.4e-100
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 132 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 191
Score = 180 (68.4 bits), Expect = 3.4e-100, Sum P(3) = 3.4e-100
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 192 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 240
Score = 129 (50.5 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 41/163 (25%), Positives = 79/163 (48%)
Query: 122 DLNVIVYHATFVVLLQT---GSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQRE 178
D++ I+ T + +++ GS F ++C+ FV +G R + P + W ++
Sbjct: 672 DIDQILLRRTHTITIESEGKGSTFAKVCIASFV----ASGNRTDISLDDP-NFWQKWAKK 726
Query: 179 FEAWTDL-----NVIVYHGRRKKLSR-----RDKERLRLKYVAADYV------PKDGEVL 222
E D N+++ R +K +R ++ E + + +D P+ +
Sbjct: 727 AELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPSTKPRRPQDK 786
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 787 SQGYARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 829
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 634 (228.2 bits), Expect = 8.7e-99, Sum P(3) = 8.7e-99
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 287 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 344
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 345 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF 404
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 405 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 464
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 465 AFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 498
Score = 271 (100.5 bits), Expect = 1.7e-85, Sum P(2) = 1.7e-85
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
TRNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+V
Sbjct: 224 TRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVV 283
Query: 128 YHAT 131
YH +
Sbjct: 284 YHGS 287
Score = 246 (91.7 bits), Expect = 8.7e-99, Sum P(3) = 8.7e-99
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 184 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 243
Score = 180 (68.4 bits), Expect = 8.7e-99, Sum P(3) = 8.7e-99
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 244 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 292
Score = 121 (47.7 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 839 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 878
Score = 40 (19.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK +VL+ ++ +
Sbjct: 1847 YVPKSADVLFSSFQK 1861
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 631 (227.2 bits), Expect = 1.0e-98, Sum P(3) = 1.0e-98
Identities = 120/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KF V+ITTFE+I++DC ELK WR +IDEAHR
Sbjct: 467 SRQMIQQYEMVYRDTQGNPLP--GIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHR 524
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEPQQF + AF+ EFG L
Sbjct: 525 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDL 584
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 585 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 644
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 645 SKGANQHNMPNLINTMMELRKCCNHPYLING 675
Score = 255 (94.8 bits), Expect = 1.5e-84, Sum P(2) = 1.5e-84
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 402 KNCILADEMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 461
Query: 129 HAT 131
H +
Sbjct: 462 HGS 464
Score = 239 (89.2 bits), Expect = 1.0e-98, Sum P(3) = 1.0e-98
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K ++P + W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 358 KHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 417
Query: 66 SLT 68
S+T
Sbjct: 418 SIT 420
Score = 174 (66.3 bits), Expect = 1.0e-98, Sum P(3) = 1.0e-98
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 421 FLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 478
Score = 112 (44.5 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 1016 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 1053
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 639 (230.0 bits), Expect = 1.2e-98, Sum P(3) = 1.2e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 1048 SQASRRTIQSYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1105
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1106 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF 1165
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1166 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1225
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1226 TFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1259
Score = 266 (98.7 bits), Expect = 4.0e-85, Sum P(2) = 4.0e-85
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VY
Sbjct: 986 RNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVY 1045
Query: 129 HAT 131
H +
Sbjct: 1046 HGS 1048
Score = 245 (91.3 bits), Expect = 1.2e-98, Sum P(3) = 1.2e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 945 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 1004
Score = 180 (68.4 bits), Expect = 1.2e-98, Sum P(3) = 1.2e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 1005 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1053
Score = 121 (47.7 bits), Expect = 5.1e-37, Sum P(4) = 5.1e-37
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 1600 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 1639
Score = 41 (19.5 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK+ +VL+ ++ +
Sbjct: 2606 YVPKNADVLFSSFQK 2620
Score = 37 (18.1 bits), Expect = 5.1e-37, Sum P(4) = 5.1e-37
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 311 NDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNW 347
++K Q ++ F+ +++TF +I D ++ + F+W
Sbjct: 1959 SEKRQKWTRREEADFYRVVSTFGVIF-DPMK-QQFDW 1993
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 636 (228.9 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 1038 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1095
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1096 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF 1155
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1156 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1215
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1216 TFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1249
Score = 266 (98.7 bits), Expect = 8.3e-85, Sum P(2) = 8.3e-85
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VY
Sbjct: 976 RNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVY 1035
Query: 129 HAT 131
H +
Sbjct: 1036 HGS 1038
Score = 245 (91.3 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 935 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 994
Score = 180 (68.4 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 995 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1043
Score = 119 (46.9 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE VE
Sbjct: 1590 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEHDVE 1629
Score = 38 (18.4 bits), Expect = 3.5e-29, Sum P(3) = 3.5e-29
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK+ +VL+ + +
Sbjct: 2596 YVPKNADVLFSPFQK 2610
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 636 (228.9 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 1039 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1096
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1097 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF 1156
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1157 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1216
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1217 TFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1250
Score = 266 (98.7 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VY
Sbjct: 977 RNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVY 1036
Query: 129 HAT 131
H +
Sbjct: 1037 HGS 1039
Score = 245 (91.3 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 936 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 995
Score = 180 (68.4 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 996 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1044
Score = 121 (47.7 bits), Expect = 8.4e-38, Sum P(3) = 8.4e-38
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 1591 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 1630
Score = 39 (18.8 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK+ +VL+ ++ +
Sbjct: 2597 YVPKNTDVLFSSFQK 2611
Score = 37 (18.1 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKND 28
KK KK+P K K P K +
Sbjct: 634 KKKKKRPKVKKDPKESKEPKEKKE 657
Score = 37 (18.1 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTL 31
K KK+P K+ K P K T+
Sbjct: 653 KEKKEPKTPKAPKIPKEPKEKKAKTV 678
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 636 (228.9 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 1042 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1099
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1100 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF 1159
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1160 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1219
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1220 TFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1253
Score = 266 (98.7 bits), Expect = 7.7e-86, Sum P(3) = 7.7e-86
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VY
Sbjct: 980 RNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVY 1039
Query: 129 HAT 131
H +
Sbjct: 1040 HGS 1042
Score = 245 (91.3 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 939 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 998
Score = 180 (68.4 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 999 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1047
Score = 121 (47.7 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 1603 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 1642
Score = 41 (19.5 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK+ +VL+ ++ +
Sbjct: 2602 YVPKNADVLFSSFQK 2616
Score = 40 (19.1 bits), Expect = 7.7e-86, Sum P(3) = 7.7e-86
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKND 28
KK KK+P A K K P K +
Sbjct: 634 KKKKKRPKAKKDPKEPKDPKEKKE 657
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 636 (228.9 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 1049 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1106
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1107 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF 1166
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1167 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1226
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1227 TFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1260
Score = 266 (98.7 bits), Expect = 8.4e-85, Sum P(2) = 8.4e-85
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VY
Sbjct: 987 RNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVY 1046
Query: 129 HAT 131
H +
Sbjct: 1047 HGS 1049
Score = 245 (91.3 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 946 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 1005
Score = 180 (68.4 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 1006 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1054
Score = 121 (47.7 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 1601 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 1640
Score = 41 (19.5 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK+ +VL+ ++ +
Sbjct: 2608 YVPKNADVLFSSFQK 2622
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 635 (228.6 bits), Expect = 2.9e-98, Sum P(3) = 2.9e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 999 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1056
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1057 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPTRFPSETTFMQEF 1116
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1117 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1176
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1177 AFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1210
Score = 266 (98.7 bits), Expect = 9.2e-86, Sum P(3) = 9.2e-86
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VY
Sbjct: 937 RNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVY 996
Query: 129 HAT 131
H +
Sbjct: 997 HGS 999
Score = 245 (91.3 bits), Expect = 2.9e-98, Sum P(3) = 2.9e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 896 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 955
Score = 180 (68.4 bits), Expect = 2.9e-98, Sum P(3) = 2.9e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 956 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1004
Score = 117 (46.2 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ +E+ VE
Sbjct: 1551 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRPLSEQDVE 1590
Score = 41 (19.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK+ +VL+ ++ +
Sbjct: 2551 YVPKNADVLFSSFQK 2565
Score = 40 (19.1 bits), Expect = 9.2e-86, Sum P(3) = 9.2e-86
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKND 28
KK KK+P A K K P K +
Sbjct: 590 KKKKKRPKAKKDPKEPKEPKEKKE 613
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 311 NDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFN 346
++K Q ++ F+ +++TF +I + D+N
Sbjct: 1910 SEKRQKWTRREEADFYRVVSTFGVIFDPAKQQFDWN 1945
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 634 (228.2 bits), Expect = 3.2e-98, Sum P(3) = 3.2e-98
Identities = 122/214 (57%), Positives = 150/214 (70%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE++F++ + + IK YKFH +ITTFE+I++DC EL++ WR +IDE
Sbjct: 1050 SQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIPWRCVVIDE 1107
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLL+FLEP +F + FM EF
Sbjct: 1108 AHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEF 1167
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTNIQKKYYR ILE+NF
Sbjct: 1168 GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNF 1227
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSKG ANVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1228 AFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1261
Score = 271 (100.5 bits), Expect = 1.9e-86, Sum P(3) = 1.9e-86
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
TRNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+V
Sbjct: 987 TRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVV 1046
Query: 128 YHAT 131
YH +
Sbjct: 1047 YHGS 1050
Score = 246 (91.7 bits), Expect = 3.2e-98, Sum P(3) = 3.2e-98
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPA DW K E S YKN+N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 947 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 1006
Score = 180 (68.4 bits), Expect = 3.2e-98, Sum P(3) = 3.2e-98
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRR 200
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SRR
Sbjct: 1007 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRR 1055
Score = 121 (47.7 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++RSECF+VE+ LL +GWGRW + L++ ++ TE+ VE
Sbjct: 1602 YARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVE 1641
Score = 43 (20.2 bits), Expect = 1.9e-86, Sum P(3) = 1.9e-86
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKND 28
KK KKKP A K K P K +
Sbjct: 646 KKKKKKPKAKKEPKDPKEPKEKKE 669
Score = 40 (19.1 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 214 YVPKDGEVLYGNWSR 228
YVPK +VL+ ++ +
Sbjct: 2610 YVPKSADVLFSSFQK 2624
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 631 (227.2 bits), Expect = 2.4e-97, Sum P(3) = 2.4e-97
Identities = 120/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KF V+ITTFE+I++DC ELK WR +IDEAHR
Sbjct: 342 SRQMIQQYEMVYRDTQGNPLP--GIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHR 399
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEPQQF + AF+ EFG L
Sbjct: 400 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDL 459
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 460 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 519
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 520 SKGANQHNMPNLINTMMELRKCCNHPYLING 550
Score = 255 (94.8 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 277 KNCILADEMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 336
Query: 129 HAT 131
H +
Sbjct: 337 HGS 339
Score = 239 (89.2 bits), Expect = 2.4e-97, Sum P(3) = 2.4e-97
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K ++P + W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 233 KHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 292
Query: 66 SLT 68
S+T
Sbjct: 293 SIT 295
Score = 174 (66.3 bits), Expect = 2.4e-97, Sum P(3) = 2.4e-97
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 296 FLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 353
Score = 112 (44.5 bits), Expect = 4.1e-36, Sum P(3) = 4.1e-36
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 891 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 928
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 631 (227.2 bits), Expect = 2.4e-97, Sum P(3) = 2.4e-97
Identities = 120/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KF V+ITTFE+I++DC ELK WR +IDEAHR
Sbjct: 342 SRQMIQQYEMVYRDTQGNPLP--GIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHR 399
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEPQQF + AF+ EFG L
Sbjct: 400 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDL 459
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 460 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 519
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 520 SKGANQHNMPNLINTMMELRKCCNHPYLING 550
Score = 255 (94.8 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 277 KNCILADEMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 336
Query: 129 HAT 131
H +
Sbjct: 337 HGS 339
Score = 239 (89.2 bits), Expect = 2.4e-97, Sum P(3) = 2.4e-97
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K ++P + W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 233 KHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 292
Query: 66 SLT 68
S+T
Sbjct: 293 SIT 295
Score = 174 (66.3 bits), Expect = 2.4e-97, Sum P(3) = 2.4e-97
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 296 FLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 353
Score = 112 (44.5 bits), Expect = 4.1e-36, Sum P(3) = 4.1e-36
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 891 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 928
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 611 (220.1 bits), Expect = 3.2e-97, Sum P(3) = 3.2e-97
Identities = 118/211 (55%), Positives = 142/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + I+ Y+F +ITTFE+I+ C EL WR IIDEAHR
Sbjct: 470 SRQMIQQYEMYFRDSQGRIIR--GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHR 527
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 528 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL 587
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 588 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 647
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 648 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKG 678
Score = 275 (101.9 bits), Expect = 9.1e-88, Sum P(3) = 9.1e-88
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VY
Sbjct: 405 RNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVY 464
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 465 HGSLISRQMIQQYEMYFR 482
Score = 236 (88.1 bits), Expect = 3.2e-97, Sum P(3) = 3.2e-97
Identities = 41/59 (69%), Positives = 51/59 (86%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PP++ W K+++S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 365 RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 423
Score = 178 (67.7 bits), Expect = 3.2e-97, Sum P(3) = 3.2e-97
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VYHG
Sbjct: 424 FLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 466
Score = 119 (46.9 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R+ECF+VE+ LL +GWGRW+E L++ F+ E VE
Sbjct: 1016 YGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVE 1055
Score = 49 (22.3 bits), Expect = 9.1e-88, Sum P(3) = 9.1e-88
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1 MSLIKKPKKKPPASDWVKLEKSPVY-KNDNT 30
MS +K+P+ +PP+S K + S Y K NT
Sbjct: 1 MSSVKRPRGRPPSSK--KSDGSGTYTKLQNT 29
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 626 (225.4 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 119/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KFHV+ITTFE+I++DC ELK +W IIDEAHR
Sbjct: 545 SRQMIQQYEMVYRDAQGNPLS--GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHR 602
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEP QF + AF+ EFG L
Sbjct: 603 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDL 662
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 663 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 722
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+KG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 723 TKGANQHNMPNLINTMMELRKCCNHPYLING 753
Score = 255 (94.8 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 480 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 539
Query: 129 HAT 131
H +
Sbjct: 540 HGS 542
Score = 239 (89.2 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 441 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 498
Score = 178 (67.7 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 499 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 556
Query: 210 VAADYVPKDG 219
A P G
Sbjct: 557 RDAQGNPLSG 566
Score = 112 (44.5 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 1094 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 1131
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 626 (225.4 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 119/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KFHV+ITTFE+I++DC ELK +W IIDEAHR
Sbjct: 545 SRQMIQQYEMVYRDAQGNPLS--GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHR 602
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEP QF + AF+ EFG L
Sbjct: 603 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDL 662
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 663 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 722
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+KG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 723 TKGANQHNMPNLINTMMELRKCCNHPYLING 753
Score = 255 (94.8 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 480 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 539
Query: 129 HAT 131
H +
Sbjct: 540 HGS 542
Score = 239 (89.2 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 441 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 498
Score = 178 (67.7 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 499 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 556
Query: 210 VAADYVPKDG 219
A P G
Sbjct: 557 RDAQGNPLSG 566
Score = 112 (44.5 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 1094 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 1131
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 626 (225.4 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 119/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KFHV+ITTFE+I++DC ELK +W IIDEAHR
Sbjct: 545 SRQMIQQYEMVYRDAQGNPLS--GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHR 602
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEP QF + AF+ EFG L
Sbjct: 603 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDL 662
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 663 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 722
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+KG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 723 TKGANQHNMPNLINTMMELRKCCNHPYLING 753
Score = 255 (94.8 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 480 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 539
Query: 129 HAT 131
H +
Sbjct: 540 HGS 542
Score = 239 (89.2 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 441 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 498
Score = 178 (67.7 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 499 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 556
Query: 210 VAADYVPKDG 219
A P G
Sbjct: 557 RDAQGNPLSG 566
Score = 112 (44.5 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 1094 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 1131
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 624 (224.7 bits), Expect = 2.1e-96, Sum P(3) = 2.1e-96
Identities = 119/211 (56%), Positives = 149/211 (70%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE+ +R+ + + ++KFHV+ITTFE+I++DC ELK +W IIDEAHR
Sbjct: 544 SRQMIQQYEMVYRDAQGNPLS--GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHR 601
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN+V ELFSLLNFLEP QF + AF+ EFG L
Sbjct: 602 LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDL 661
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V +DVEK++APK+ET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 662 KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL 721
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG N+PNL+NTMMELRKCC HPYL++G
Sbjct: 722 SKGANQHNMPNLINTMMELRKCCNHPYLISG 752
Score = 255 (94.8 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 479 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 538
Query: 129 HAT 131
H +
Sbjct: 539 HGS 541
Score = 239 (89.2 bits), Expect = 2.1e-96, Sum P(3) = 2.1e-96
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 440 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 497
Score = 178 (67.7 bits), Expect = 2.1e-96, Sum P(3) = 2.1e-96
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 498 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 555
Query: 210 VAADYVPKDG 219
A P G
Sbjct: 556 RDAQGNPLSG 565
Score = 112 (44.5 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 228 RSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
R+ECF+VE+ LL FGWGRWK+ L + F+ E+ +E
Sbjct: 1093 RAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDME 1130
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 609 (219.4 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 118/211 (55%), Positives = 143/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR MLQ+YE++ R+ + + I+ Y+F +ITTFE+I+ C EL +WR IIDEAHR
Sbjct: 997 SRQMLQQYEMYCRDSQGRVIR--GAYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHR 1054
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 1055 LKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPTRFPSENTFMQEFGDL 1114
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 1115 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1174
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+KG ANVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1175 AKGAGQANVPNLLNTMMELRKCCNHPYLIKG 1205
Score = 275 (101.9 bits), Expect = 6.6e-83, Sum P(2) = 6.6e-83
Identities = 48/65 (73%), Positives = 58/65 (89%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF++ +++TGI+GPFL+IAPLSTI NW+REF WT LNVIVY
Sbjct: 932 RNCILADEMGLGKTIQSITFLEEIYRTGIKGPFLIIAPLSTIANWEREFRTWTHLNVIVY 991
Query: 129 HATFV 133
H + V
Sbjct: 992 HGSVV 996
Score = 248 (92.4 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 44/60 (73%), Positives = 53/60 (88%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++PPAS W KLEKS Y N+N+LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 891 ERPPASHWKKLEKSRKYCNENSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSIT 950
Score = 183 (69.5 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F++ +++TGI+GPFL+IAPLSTI NW+REF WT LNVIVYHG
Sbjct: 951 FLEEIYRTGIKGPFLIIAPLSTIANWEREFRTWTHLNVIVYHG 993
Score = 124 (48.7 bits), Expect = 8.6e-39, Sum P(3) = 8.6e-39
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 225 NWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
++ R+ECF+VE+ LL +GWGRWK+ LA+ F+ +E VE
Sbjct: 1546 SYGRTECFRVEKNLLVYGWGRWKDILAHGRFKRQLSERDVE 1586
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 616 (221.9 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 122/222 (54%), Positives = 150/222 (67%)
Query: 295 ASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+ ASR +Q YE+++R+ + + IK YKFH +ITTFE+I++DC EL++ WR IIDE
Sbjct: 1093 SQASRKTIQAYEMYYRDTQGRIIK--GAYKFHAVITTFEMILTDCPELRNVPWRCVIIDE 1150
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
AHRLKNRNCK +GTPLQN V ELFSLLNFLEP +F + FM EF
Sbjct: 1151 AHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEPDRFPSESTFMQEF 1210
Query: 415 GQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
G LKTE +V EDVEK++APKEET++EVELTN+QKKYYR ILE+NF
Sbjct: 1211 GDLKTEEQVQKLQGILKPMMLRRLKEDVEKNLAPKEETIIEVELTNVQKKYYRAILEKNF 1270
Query: 475 SFLSK--------GTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+FLSK G +NVPNL+NTMMELRKCC HPYL+NG
Sbjct: 1271 AFLSKSGAGGGSGGGGGSNVPNLLNTMMELRKCCNHPYLING 1312
Score = 271 (100.5 bits), Expect = 3.7e-83, Sum P(2) = 3.7e-83
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 68 TRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
TRNCILADEMGLGKTIQS+TF+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+V
Sbjct: 1030 TRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVV 1089
Query: 128 YHAT 131
YH +
Sbjct: 1090 YHGS 1093
Score = 245 (91.3 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 44/63 (69%), Positives = 51/63 (80%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K ++PP SDW K E S YKN N LR YQLEG+NWL+F+W+N RNCILADEMGLGKTIQ
Sbjct: 987 KRVERPPTSDWQKSESSREYKNANALREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQ 1046
Query: 66 SLT 68
S+T
Sbjct: 1047 SIT 1049
Score = 180 (68.4 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ ++ GI GPFLVIAPLSTIPNW+REF WT+LNV+VYHG + SR+ + + Y
Sbjct: 1050 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHG--SQASRKTIQAYEMYY 1107
Score = 113 (44.8 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ RSECF+VE+ LL +GWGRW + L++ F+ E VE
Sbjct: 1653 YPRSECFRVEKNLLVYGWGRWGDILSHGRFKRPLRERDVE 1692
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 612 (220.5 bits), Expect = 4.0e-95, Sum P(3) = 4.0e-95
Identities = 118/211 (55%), Positives = 143/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + I+ Y+F +ITTFE+I+ C EL +WR IIDEAHR
Sbjct: 943 SRQMIQQYEMYFRDSQGRIIR--GAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHR 1000
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 1001 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL 1060
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 1061 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1120
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1121 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKG 1151
Score = 275 (101.9 bits), Expect = 3.0e-83, Sum P(2) = 3.0e-83
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VY
Sbjct: 878 RNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVY 937
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 938 HGSLISRQMIQQYEMYFR 955
Score = 240 (89.5 bits), Expect = 4.0e-95, Sum P(3) = 4.0e-95
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PP++ W K+E+S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 838 RPPSNIWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 896
Score = 178 (67.7 bits), Expect = 4.0e-95, Sum P(3) = 4.0e-95
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VYHG
Sbjct: 897 FLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 939
Score = 125 (49.1 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 224 GNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
G + R+ECF+VE+ LL +GWGRW+E L++ F+ E VE
Sbjct: 1487 GGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVE 1528
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 612 (220.5 bits), Expect = 5.4e-95, Sum P(3) = 5.4e-95
Identities = 118/211 (55%), Positives = 142/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + ++ Y+F +ITTFE+I+ C EL WR IIDEAHR
Sbjct: 941 SRQMIQQYEMYFRDSQGRIVR--GTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHR 998
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKNRNCK +GTPLQN V ELFSLL+FLEP +F FM EFG L
Sbjct: 999 LKNRNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDL 1058
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NF+FL
Sbjct: 1059 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFL 1118
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG ANVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1119 SKGAGQANVPNLVNTMMELRKCCNHPYLIKG 1149
Score = 273 (101.2 bits), Expect = 3.6e-83, Sum P(2) = 3.6e-83
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ + +GIRGPFL+IAPLSTI NW+REF WTDLNV+VY
Sbjct: 876 RNCILADEMGLGKTIQSITFLYEILLSGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVY 935
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 936 HGSMISRQMIQQYEMYFR 953
Score = 239 (89.2 bits), Expect = 5.4e-95, Sum P(3) = 5.4e-95
Identities = 42/59 (71%), Positives = 49/59 (83%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PP + W K+E S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 836 RPPPNSWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 894
Score = 176 (67.0 bits), Expect = 5.4e-95, Sum P(3) = 5.4e-95
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ + +GIRGPFL+IAPLSTI NW+REF WTDLNV+VYHG
Sbjct: 895 FLYEILLSGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHG 937
Score = 121 (47.7 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R+ECF+VE+ LL +GWGRW+E L++ F+ E+ VE
Sbjct: 1488 YGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEQDVE 1527
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 611 (220.1 bits), Expect = 6.6e-95, Sum P(3) = 6.6e-95
Identities = 118/211 (55%), Positives = 142/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + I+ Y+F +ITTFE+I+ C EL WR IIDEAHR
Sbjct: 946 SRQMIQQYEMYFRDSQGRIIR--GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHR 1003
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 1004 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL 1063
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 1064 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1123
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1124 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKG 1154
Score = 275 (101.9 bits), Expect = 3.9e-83, Sum P(2) = 3.9e-83
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VY
Sbjct: 881 RNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVY 940
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 941 HGSLISRQMIQQYEMYFR 958
Score = 239 (89.2 bits), Expect = 6.6e-95, Sum P(3) = 6.6e-95
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PPA+ W K+++S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 841 RPPANIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 899
Score = 178 (67.7 bits), Expect = 6.6e-95, Sum P(3) = 6.6e-95
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VYHG
Sbjct: 900 FLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 942
Score = 119 (46.9 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R+ECF+VE+ LL +GWGRW+E L++ F+ E VE
Sbjct: 1492 YGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVE 1531
Score = 37 (18.1 bits), Expect = 4.6e-58, Sum P(2) = 4.6e-58
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 192 GRRKKLSRRDKERLRLK 208
GRR K +DKE + K
Sbjct: 569 GRRMKSKPKDKESKKTK 585
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 610 (219.8 bits), Expect = 1.0e-94, Sum P(3) = 1.0e-94
Identities = 118/211 (55%), Positives = 142/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + I+ Y+F +ITTFE+I+ C EL WR IIDEAHR
Sbjct: 943 SRQMIQQYEMYFRDSQGRIIR--GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHR 1000
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 1001 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL 1060
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 1061 KTEEQVQKLQAILKPMMLRRLKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1120
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1121 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKG 1151
Score = 276 (102.2 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ V TGIRGPFL+IAPLSTI NW+REF WTD+NV+VY
Sbjct: 878 RNCILADEMGLGKTIQSITFLYEVLLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVY 937
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 938 HGSLISRQMIQQYEMYFR 955
Score = 237 (88.5 bits), Expect = 1.0e-94, Sum P(3) = 1.0e-94
Identities = 41/59 (69%), Positives = 51/59 (86%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PP++ W K+++S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 838 RPPSNIWKKIDQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 896
Score = 179 (68.1 bits), Expect = 1.0e-94, Sum P(3) = 1.0e-94
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ V TGIRGPFL+IAPLSTI NW+REF WTD+NV+VYHG
Sbjct: 897 FLYEVLLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 939
Score = 125 (49.1 bits), Expect = 3.2e-37, Sum P(3) = 3.2e-37
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 224 GNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
G + R+ECF+VE+ LL +GWGRW+E L++ F+ E VE
Sbjct: 1487 GGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVE 1528
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 611 (220.1 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 118/211 (55%), Positives = 142/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + I+ Y+F +ITTFE+I+ C EL WR IIDEAHR
Sbjct: 944 SRQMIQQYEMYFRDSQGRIIR--GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHR 1001
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 1002 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL 1061
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 1062 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1121
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1122 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKG 1152
Score = 275 (101.9 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VY
Sbjct: 879 RNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVY 938
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 939 HGSLISRQMIQQYEMYFR 956
Score = 236 (88.1 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 41/59 (69%), Positives = 51/59 (86%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PP++ W K+++S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 839 RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 897
Score = 178 (67.7 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VYHG
Sbjct: 898 FLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 940
Score = 119 (46.9 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R+ECF+VE+ LL +GWGRW+E L++ F+ E VE
Sbjct: 1490 YGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVE 1529
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 611 (220.1 bits), Expect = 2.2e-94, Sum P(3) = 2.2e-94
Identities = 118/211 (55%), Positives = 142/211 (67%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR M+Q+YE++FR+ + + I+ Y+F +ITTFE+I+ C EL WR IIDEAHR
Sbjct: 945 SRQMIQQYEMYFRDSQGRIIR--GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHR 1002
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN+NCK +GTPLQN V ELFSLL+FLEP +F + FM EFG L
Sbjct: 1003 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL 1062
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
KTE +V EDVEK +APKEET++EVELTNIQKKYYR ILE+NFSFL
Sbjct: 1063 KTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1122
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
SKG NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1123 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKG 1153
Score = 275 (101.9 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
RNCILADEMGLGKTIQS+TF+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VY
Sbjct: 880 RNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVY 939
Query: 129 HATFVV--LLQTGSKFFR 144
H + + ++Q +FR
Sbjct: 940 HGSLISRQMIQQYEMYFR 957
Score = 234 (87.4 bits), Expect = 2.2e-94, Sum P(3) = 2.2e-94
Identities = 41/59 (69%), Positives = 50/59 (84%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+PP + W K+++S YKN N LR YQLEGLNWL+F+W+N RNCILADEMGLGKTIQS+T
Sbjct: 840 RPPPNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT 898
Score = 178 (67.7 bits), Expect = 2.2e-94, Sum P(3) = 2.2e-94
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ + TGIRGPFL+IAPLSTI NW+REF WTD+NV+VYHG
Sbjct: 899 FLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 941
Score = 119 (46.9 bits), Expect = 3.8e-36, Sum P(3) = 3.8e-36
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R+ECF+VE+ LL +GWGRW+E L++ F+ E VE
Sbjct: 1491 YGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVE 1530
Score = 37 (18.1 bits), Expect = 4.6e-58, Sum P(2) = 4.6e-58
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 192 GRRKKLSRRDKERLRLK 208
GRR K +DKE + K
Sbjct: 568 GRRMKSKPKDKESKKTK 584
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 628 (226.1 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 120/212 (56%), Positives = 147/212 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 120 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 177
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 178 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 237
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 238 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 297
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
LSKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 298 LSKGAGHTNMPNLLNTMMELRKCCNHPYLING 329
Score = 252 (93.8 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 56 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 115
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 116 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 170
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 171 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 226
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 227 SESEFL--KDFGDLKTEEQVQK 246
Score = 226 (84.6 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 12 KRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 71
Query: 66 SL 67
S+
Sbjct: 72 SI 73
Score = 117 (46.2 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 667 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 706
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 543 (196.2 bits), Expect = 4.8e-83, Sum P(3) = 4.8e-83
Identities = 110/215 (51%), Positives = 143/215 (66%)
Query: 298 SRNMLQEYELFFRNDKNQF-IK--EKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDE 354
+R +LQ+YE+F+ DK K +K+ K LITTFE ++SD LK WR+C+IDE
Sbjct: 1281 AREVLQQYEVFY--DKRHCGAKNWKKNFVKIDALITTFETVVSDVEFLKKIPWRVCVIDE 1338
Query: 355 AHRLKNRNCKXXXXXXXXXXXXXXXX-SGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSE 413
AHRLKNRNCK +GTPLQNN++ELFSLLNFL PQQF N+ F+ +
Sbjct: 1339 AHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQ 1398
Query: 414 FGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473
FG +T+ +V EDVEKS+ PKEET++EV+L+++QKK+YR ILERN
Sbjct: 1399 FGSCQTDDQVQKLQEILKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERN 1458
Query: 474 FSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
FS L KGT++ P+LMN MMELRKCC HP+L+NG
Sbjct: 1459 FSHLCKGTSA---PSLMNVMMELRKCCNHPFLING 1490
Score = 248 (92.4 bits), Expect = 4.6e-73, Sum P(2) = 4.6e-73
Identities = 42/63 (66%), Positives = 52/63 (82%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKT+Q++TF+ ++ GI GPFLV+ PLSTI NW REFE WTD+N IVY
Sbjct: 1216 QNCILADEMGLGKTVQTITFLSRIYDYGIHGPFLVVVPLSTIQNWVREFETWTDMNAIVY 1275
Query: 129 HAT 131
H +
Sbjct: 1276 HGS 1278
Score = 206 (77.6 bits), Expect = 4.8e-83, Sum P(3) = 4.8e-83
Identities = 33/63 (52%), Positives = 50/63 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
+ K++P +W K+ S V+KN N+LR YQ EG++WL++ ++N +NCILADEMGLGKT+Q
Sbjct: 1172 REKQRPEPEEWKKMSTSKVWKNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQ 1231
Query: 66 SLT 68
++T
Sbjct: 1232 TIT 1234
Score = 167 (63.8 bits), Expect = 4.8e-83, Sum P(3) = 4.8e-83
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
F+ ++ GI GPFLV+ PLSTI NW REFE WTD+N IVYHG
Sbjct: 1235 FLSRIYDYGIHGPFLVVVPLSTIQNWVREFETWTDMNAIVYHG 1277
Score = 78 (32.5 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 192 GRRKKLSRRDKERLRLKYVAADYVP--KDGEVLYGNWSRSECFKVERGLLTFGWGRWKE 248
G RK+ + ++R R DY + E+ S++E FKVE+ L +GWGRW E
Sbjct: 1811 GNRKRGAAEKRKRRRGNDEDGDYSGSYRPDELAT---SKAEYFKVEKVLAQYGWGRWAE 1866
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 623 (224.4 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 121/213 (56%), Positives = 149/213 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++DK I YKF LITTFE+I+SDC EL++ +WR +IDEAH
Sbjct: 930 ASRQMIQQYEMYCKDDKGHLIP--GAYKFDALITTFEMILSDCPELREISWRCVVIDEAH 987
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ EFG
Sbjct: 988 RLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFGD 1047
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELT++QKKYYR ILERNFSF
Sbjct: 1048 LKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSF 1107
Query: 477 LSKGTT-SANVPNLMNTMMELRKCCIHPYLLNG 508
LS G T ++NVPNL+NTMMELRKCC HPYL+ G
Sbjct: 1108 LSMGATQNSNVPNLLNTMMELRKCCNHPYLITG 1140
Score = 238 (88.8 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 40/63 (63%), Positives = 51/63 (80%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ + +F G++ PF++IAPLSTI NW+REF WTD+N IVY
Sbjct: 866 QNCILADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFSNWTDMNAIVY 925
Query: 129 HAT 131
H +
Sbjct: 926 HGS 928
Score = 230 (86.0 bits), Expect = 7.5e-80, Sum P(2) = 7.5e-80
Identities = 47/90 (52%), Positives = 61/90 (67%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KL++S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 822 KRTPRPAASAWKKLDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 881
Query: 66 SLTRNCILADEMGLGKTIQSLTFVDAVFKT 95
S+ +L++ G +QS + A T
Sbjct: 882 SIA---LLSEMFSAG--VQSPFMIIAPLST 906
Score = 158 (60.7 bits), Expect = 9.0e-74, Sum P(3) = 9.0e-74
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHG 192
+F G++ PF++IAPLSTI NW+REF WTD+N IVYHG
Sbjct: 889 MFSAGVQSPFMIIAPLSTITNWEREFSNWTDMNAIVYHG 927
Score = 108 (43.1 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 224 GNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
G + R++CF+VE+ LL +GWGRW++ L++ + +E VE
Sbjct: 1482 GGYGRTDCFRVEKHLLVYGWGRWRDILSHARCKRRLSERDVE 1523
Score = 43 (20.2 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 1 MSLIKKPKKKPPASDWVKLEKSP 23
++L+ K +K+ P+SD ++ SP
Sbjct: 568 ITLVGKKRKRNPSSDHSDVDLSP 590
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 628 (226.1 bits), Expect = 3.8e-80, Sum P(2) = 3.8e-80
Identities = 119/212 (56%), Positives = 148/212 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ K + I YKF LITTFE+++SDC EL++ WR IIDEAH
Sbjct: 838 ASRQMIQQYEMYCKDSKGRLIP--GAYKFDALITTFEMVLSDCPELREIEWRCVIIDEAH 895
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QFS+ F+ +FG
Sbjct: 896 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQFSSEAEFLKDFGD 955
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 956 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1015
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
L+KG + +N PNL+NTMMELRKCC HPYL+ G
Sbjct: 1016 LTKGASQSNTPNLLNTMMELRKCCNHPYLITG 1047
Score = 259 (96.2 bits), Expect = 6.3e-37, Sum P(2) = 6.3e-37
Identities = 78/202 (38%), Positives = 108/202 (53%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ V+ GIRGPFLVIAPLSTI NW+REF +WT +N IVY
Sbjct: 774 QNCILADEMGLGKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREFGSWTQMNTIVY 833
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F ++ LS P RE E W
Sbjct: 834 HGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMV--LSDCPEL-REIE-WRC- 888
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 889 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPTQFS 944
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 945 SEAEFL--KDFGDLKTEEQVQK 964
Score = 226 (84.6 bits), Expect = 3.8e-80, Sum P(2) = 3.8e-80
Identities = 40/59 (67%), Positives = 49/59 (83%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+P A+ W KLE S Y+N N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 734 RPAATSWKKLELSREYQNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIT 792
Score = 120 (47.3 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEE 266
+ R++CF+VE+ LL +GWGRW++ L + F+ G E VE+
Sbjct: 1385 YGRTDCFRVEKHLLVYGWGRWRDILTHGRFKRGMNERDVEK 1425
Score = 45 (20.9 bits), Expect = 4.5e-61, Sum P(2) = 4.5e-61
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKNDNTLRA 33
K+ KKK SD K EK K +LR+
Sbjct: 442 KRKKKKGETSDRSKDEKPKKVKGSGSLRS 470
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 628 (226.1 bits), Expect = 3.9e-80, Sum P(2) = 3.9e-80
Identities = 120/212 (56%), Positives = 147/212 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 511 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 568
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 569 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 628
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 629 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 688
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
LSKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 689 LSKGAGHTNMPNLLNTMMELRKCCNHPYLING 720
Score = 252 (93.8 bits), Expect = 4.2e-36, Sum P(2) = 4.2e-36
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 447 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 506
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 507 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 561
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 562 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 617
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 618 SESEFL--KDFGDLKTEEQVQK 637
Score = 226 (84.6 bits), Expect = 3.9e-80, Sum P(2) = 3.9e-80
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 403 KRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 462
Query: 66 SL 67
S+
Sbjct: 463 SI 464
Score = 117 (46.2 bits), Expect = 9.4e-22, Sum P(2) = 9.4e-22
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1058 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1097
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 628 (226.1 bits), Expect = 6.4e-80, Sum P(2) = 6.4e-80
Identities = 120/212 (56%), Positives = 147/212 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 894 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 951
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 952 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 1011
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 1012 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1071
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
LSKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 1072 LSKGAGHTNMPNLLNTMMELRKCCNHPYLING 1103
Score = 252 (93.8 bits), Expect = 6.0e-36, Sum P(2) = 6.0e-36
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 830 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 889
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 890 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 944
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 945 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 1000
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 1001 SESEFL--KDFGDLKTEEQVQK 1020
Score = 226 (84.6 bits), Expect = 6.4e-80, Sum P(2) = 6.4e-80
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 786 KRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 845
Query: 66 SL 67
S+
Sbjct: 846 SI 847
Score = 117 (46.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1441 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1480
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 628 (226.1 bits), Expect = 1.3e-79, Sum P(2) = 1.3e-79
Identities = 120/212 (56%), Positives = 147/212 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 894 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 951
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 952 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 1011
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 1012 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1071
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
LSKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 1072 LSKGAGHTNMPNLLNTMMELRKCCNHPYLING 1103
Score = 252 (93.8 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 830 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 889
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 890 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 944
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 945 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 1000
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 1001 SESEFL--KDFGDLKTEEQVQK 1020
Score = 223 (83.6 bits), Expect = 1.3e-79, Sum P(2) = 1.3e-79
Identities = 41/62 (66%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P A+ W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 786 KRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 845
Query: 66 SL 67
S+
Sbjct: 846 SI 847
Score = 117 (46.2 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1441 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1480
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 628 (226.1 bits), Expect = 1.7e-79, Sum P(2) = 1.7e-79
Identities = 120/212 (56%), Positives = 147/212 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 896 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 953
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 954 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 1013
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 1014 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1073
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
LSKG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 1074 LSKGAGHTNMPNLLNTMMELRKCCNHPYLING 1105
Score = 252 (93.8 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 832 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 891
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 892 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 946
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 947 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 1002
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 1003 SESEFL--KDFGDLKTEEQVQK 1022
Score = 222 (83.2 bits), Expect = 1.7e-79, Sum P(2) = 1.7e-79
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+P A+ W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+
Sbjct: 792 RPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSI 849
Score = 117 (46.2 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1443 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1482
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 622 (224.0 bits), Expect = 2.6e-79, Sum P(2) = 2.6e-79
Identities = 119/211 (56%), Positives = 146/211 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 847 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 904
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 905 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 964
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 965 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1024
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLN 507
LSKG N+PNL+NTMMELRKCC HPYL+N
Sbjct: 1025 LSKGAGHTNMPNLLNTMMELRKCCNHPYLIN 1055
Score = 252 (93.8 bits), Expect = 5.8e-36, Sum P(2) = 5.8e-36
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 783 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 842
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 843 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 897
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 898 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 953
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 954 SESEFL--KDFGDLKTEEQVQK 973
Score = 226 (84.6 bits), Expect = 2.6e-79, Sum P(2) = 2.6e-79
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 739 KRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 798
Query: 66 SL 67
S+
Sbjct: 799 SI 800
Score = 117 (46.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1395 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1434
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 622 (224.0 bits), Expect = 2.7e-79, Sum P(2) = 2.7e-79
Identities = 119/211 (56%), Positives = 146/211 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 894 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 951
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 952 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 1011
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 1012 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1071
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLN 507
LSKG N+PNL+NTMMELRKCC HPYL+N
Sbjct: 1072 LSKGAGHTNMPNLLNTMMELRKCCNHPYLIN 1102
Score = 252 (93.8 bits), Expect = 6.0e-36, Sum P(2) = 6.0e-36
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 830 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 889
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 890 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 944
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 945 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 1000
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 1001 SESEFL--KDFGDLKTEEQVQK 1020
Score = 226 (84.6 bits), Expect = 2.7e-79, Sum P(2) = 2.7e-79
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 786 KRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 845
Query: 66 SL 67
S+
Sbjct: 846 SI 847
Score = 117 (46.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1442 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1481
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 622 (224.0 bits), Expect = 2.8e-79, Sum P(2) = 2.8e-79
Identities = 119/211 (56%), Positives = 146/211 (69%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR M+Q+YE++ ++ + + I YKF LITTFE+I+SDC EL++ WR IIDEAH
Sbjct: 894 ASRQMIQQYEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAH 951
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNRNCK +GTPLQN V ELFSLL+FLEP QF + F+ +FG
Sbjct: 952 RLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD 1011
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
LKTE +V EDVEK++APK+ET++EVELTNIQKKYYR ILE+NFSF
Sbjct: 1012 LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSF 1071
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLLN 507
LSKG N+PNL+NTMMELRKCC HPYL+N
Sbjct: 1072 LSKGAGHTNMPNLLNTMMELRKCCNHPYLIN 1102
Score = 252 (93.8 bits), Expect = 6.0e-36, Sum P(2) = 6.0e-36
Identities = 77/202 (38%), Positives = 106/202 (52%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+ F+ V+ GI GPFLVIAPLSTI NW+REF WT++N IVY
Sbjct: 830 QNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVY 889
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDL 185
H + ++Q + + + +K + F +I LS P RE E W
Sbjct: 890 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMI--LSDCPEL-REIE-WRC- 944
Query: 186 NVIVYHGRRKKLSRRDKERLRLKYVAADY-VPKDGEVLYGNWSRSECFKVERGLLTFGWG 244
VI+ R K +R K LK++ ++ V G L + E F + L +
Sbjct: 945 -VIIDEAHRLK-NRNCKLLDSLKHMDLEHKVLLTGTPLQN--TVEELFSLLHFLEPSQFP 1000
Query: 245 RWKEFLANNEFRNGWTEEYVEE 266
EFL +F + TEE V++
Sbjct: 1001 SESEFL--KDFGDLKTEEQVQK 1020
Score = 226 (84.6 bits), Expect = 2.8e-79, Sum P(2) = 2.8e-79
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +P AS W KLE S YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQ
Sbjct: 786 KRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ 845
Query: 66 SL 67
S+
Sbjct: 846 SI 847
Score = 117 (46.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVE 265
+ R++CF+VE+ LL +GWGRW++ L++ F+ TE VE
Sbjct: 1442 YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVE 1481
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 505 (182.8 bits), Expect = 2.5e-77, Sum P(3) = 2.5e-77
Identities = 107/220 (48%), Positives = 134/220 (60%)
Query: 295 ASASRNMLQEYELFFRNDKN------QFIKEKDLYKFHVLITTFEIIISDCLELKDFNWR 348
+ A R + + YE F+ DK+ + KF+VLITT+E+ I+D L W+
Sbjct: 591 SGAGRPICRNYE-FYLKDKDGGGGGASGGASGKITKFNVLITTYEMAITDRTHLSRIPWK 649
Query: 349 LCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNE 408
+IDEAHRLKN++CK +GTPLQNN EL+SLLNFL+P+QFSN +
Sbjct: 650 YLVIDEAHRLKNKSCKLTIELRSYSFDHLLLLTGTPLQNNTQELWSLLNFLDPKQFSNLD 709
Query: 409 AFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRG 468
F+ E+G LK S+V E VEKSIAPKEET+VEVELT +QKKYYR
Sbjct: 710 QFLLEYGDLKESSQVESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRA 769
Query: 469 ILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
I E+NFSFL KG S P+L+N MMELRKCC HPYL G
Sbjct: 770 IYEKNFSFLRKGGKSNQGPSLLNIMMELRKCCNHPYLTKG 809
Score = 231 (86.4 bits), Expect = 1.7e-67, Sum P(2) = 1.7e-67
Identities = 41/62 (66%), Positives = 53/62 (85%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
RN IL DEMGLGKT+QS++ ++ + K GIRGPFLV+APL+TIP+W+REFE WTD+N +V
Sbjct: 528 RNSILGDEMGLGKTVQSVSILETLRKVHGIRGPFLVVAPLTTIPHWKREFENWTDMNALV 587
Query: 128 YH 129
YH
Sbjct: 588 YH 589
Score = 193 (73.0 bits), Expect = 2.5e-77, Sum P(3) = 2.5e-77
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 6 KPKKKPPASDWVKLEKSPVY-KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
+ K +PP + W K+++SP Y N LR YQLEGLNWL F W RN IL DEMGLGKT+
Sbjct: 483 RDKPRPPRTAWKKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTV 542
Query: 65 QSLT 68
QS++
Sbjct: 543 QSVS 546
Score = 160 (61.4 bits), Expect = 2.5e-77, Sum P(3) = 2.5e-77
Identities = 26/34 (76%), Positives = 32/34 (94%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYH 191
GIRGPFLV+APL+TIP+W+REFE WTD+N +VYH
Sbjct: 556 GIRGPFLVVAPLTTIPHWKREFENWTDMNALVYH 589
Score = 48 (22.0 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 225 NWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEYVEE 266
+W+ E K++ +L +G RW + + W+ E V +
Sbjct: 1156 SWTAGERNKLKSAMLAYGSSRW-DLIKTVAGLKRWSVEQVRQ 1196
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 396 (144.5 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 169 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 228
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 229 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 288
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 289 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 348
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 349 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 381
Score = 181 (68.8 bits), Expect = 8.9e-52, Sum P(2) = 8.9e-52
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 105 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 163
Score = 174 (66.3 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 55 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 114
Query: 63 TIQSL 67
T+Q++
Sbjct: 115 TVQTI 119
Score = 123 (48.4 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 121 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 171
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 396 (144.5 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 760 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 819
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 820 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 879
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 880 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 939
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 940 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 972
Score = 181 (68.8 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 696 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 754
Score = 174 (66.3 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 646 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 705
Query: 63 TIQSL 67
T+Q++
Sbjct: 706 TVQTI 710
Score = 123 (48.4 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 712 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 762
Score = 49 (22.3 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 158 MMTVLGAKWREFSANNPFK 176
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 396 (144.5 bits), Expect = 3.5e-61, Sum P(3) = 3.5e-61
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 786 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 845
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 846 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 905
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 906 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 965
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 966 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 998
Score = 181 (68.8 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 722 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 780
Score = 174 (66.3 bits), Expect = 3.5e-61, Sum P(3) = 3.5e-61
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 672 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 731
Query: 63 TIQSL 67
T+Q++
Sbjct: 732 TVQTI 736
Score = 123 (48.4 bits), Expect = 3.5e-61, Sum P(3) = 3.5e-61
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 738 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 788
Score = 49 (22.3 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 184 MMTVLGAKWREFSANNPFK 202
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 396 (144.5 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 702 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 761
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 762 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 821
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 822 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 881
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 882 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 914
Score = 181 (68.8 bits), Expect = 4.1e-51, Sum P(2) = 4.1e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 638 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 696
Score = 174 (66.3 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 588 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 647
Query: 63 TIQSL 67
T+Q++
Sbjct: 648 TVQTI 652
Score = 123 (48.4 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 654 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 704
Score = 53 (23.7 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1604 IYDIWHRRHDYWLLAGIVTHGYARWQD 1630
Score = 49 (22.3 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 100 MMTVLGAKWREFSANNPFK 118
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 396 (144.5 bits), Expect = 1.7e-60, Sum P(3) = 1.7e-60
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 718 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 777
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 778 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 837
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 838 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 897
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 898 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 930
Score = 181 (68.8 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 654 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 712
Score = 174 (66.3 bits), Expect = 1.7e-60, Sum P(3) = 1.7e-60
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 604 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 663
Query: 63 TIQSL 67
T+Q++
Sbjct: 664 TVQTI 668
Score = 123 (48.4 bits), Expect = 1.7e-60, Sum P(3) = 1.7e-60
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 670 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 720
Score = 53 (23.7 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1660 IYDIWHRRHDYWLLAGIVTHGYARWQD 1686
Score = 49 (22.3 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 116 MMTVLGAKWREFSANNPFK 134
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 396 (144.5 bits), Expect = 2.2e-60, Sum P(3) = 2.2e-60
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 649 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 708
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 709 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 768
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 769 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 828
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 829 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 861
Score = 181 (68.8 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 585 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 643
Score = 174 (66.3 bits), Expect = 2.2e-60, Sum P(3) = 2.2e-60
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 535 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 594
Query: 63 TIQSL 67
T+Q++
Sbjct: 595 TVQTI 599
Score = 123 (48.4 bits), Expect = 2.2e-60, Sum P(3) = 2.2e-60
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 601 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 651
Score = 53 (23.7 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1590 IYDIWHRRHDYWLLAGIVTHGYARWQD 1616
Score = 49 (22.3 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 47 MMTVLGAKWREFSANNPFK 65
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 396 (144.5 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 732 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 791
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 792 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 851
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 852 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 911
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 912 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 944
Score = 181 (68.8 bits), Expect = 5.5e-51, Sum P(2) = 5.5e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 668 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 726
Score = 174 (66.3 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 618 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 677
Query: 63 TIQSL 67
T+Q++
Sbjct: 678 TVQTI 682
Score = 123 (48.4 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 684 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 734
Score = 53 (23.7 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1624 IYDIWHRRHDYWLLAGIVTHGYARWQD 1650
Score = 49 (22.3 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 114 MMTVLGAKWREFSANNPFK 132
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 396 (144.5 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 786 SRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 845
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 846 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 905
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 906 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 965
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 966 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 998
Score = 181 (68.8 bits), Expect = 6.4e-51, Sum P(2) = 6.4e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 722 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 780
Score = 174 (66.3 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 672 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 731
Query: 63 TIQSL 67
T+Q++
Sbjct: 732 TVQTI 736
Score = 123 (48.4 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 738 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 788
Score = 53 (23.7 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1732 IYDIWHRRHDYWLLAGIVTHGYARWQD 1758
Score = 49 (22.3 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 184 MMTVLGAKWREFSANNPFK 202
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 395 (144.1 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 88/215 (40%), Positives = 120/215 (55%)
Query: 298 SRNMLQEYELFF-----RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R K F +K++ KFHVL+T++E+I D L W +
Sbjct: 784 SRSVIRENEFSFEDNAIRGGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLV 843
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 844 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 903
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 904 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 963
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 964 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 996
Score = 181 (68.8 bits), Expect = 8.0e-51, Sum P(2) = 8.0e-51
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q++ F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y
Sbjct: 720 ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY 778
Score = 174 (66.3 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 35/65 (53%), Positives = 41/65 (63%)
Query: 5 KKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
+KP P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 670 EKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 729
Query: 63 TIQSL 67
T+Q++
Sbjct: 730 TVQTI 734
Score = 123 (48.4 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
F+ +++K G +GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 736 FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 786
Score = 52 (23.4 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1726 IYEIWHRRHDYWLLAGIVTHGYARWQD 1752
Score = 49 (22.3 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 183 MMTVLGAKWREFSANNPFK 201
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 383 (139.9 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 85/215 (39%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F N+ K +K++ KFHVL+T++E+I D L +W +
Sbjct: 796 SRAVIRENEFSFENNAIRGGKKPSKMKKEASVKFHVLLTSYELITIDTAVLGSIDWACLV 855
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++FSN E F+
Sbjct: 856 VDEAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFL 915
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K + K E +V VEL+ +QKKYY+ IL
Sbjct: 916 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILT 975
Query: 472 RNFSFLS-KGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ +G N +L+N +M+L+KCC HPYL
Sbjct: 976 RNFEALNTRG--GGNQVSLLNVVMDLKKCCNHPYL 1008
Score = 183 (69.5 bits), Expect = 9.1e-50, Sum P(2) = 9.1e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 732 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 790
Score = 173 (66.0 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 34/68 (50%), Positives = 43/68 (63%)
Query: 1 MSLIKKPKKKPPASDWVKLEKSPVYKNDN--TLRAYQLEGLNWLMFSWFNGRNCILADEM 58
M + +P + P +K E+ P Y + TL YQLEGLNWL FSW G + ILADEM
Sbjct: 678 MRKLDRPPENPVVDPTIKFERQPDYLDTTGGTLHPYQLEGLNWLRFSWAQGTDTILADEM 737
Query: 59 GLGKTIQS 66
GLGKT+Q+
Sbjct: 738 GLGKTVQT 745
Score = 124 (48.7 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 748 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 792
Score = 46 (21.3 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 234 VERGLLTFGWGRWKEFLANNEFRNGWT 260
V + ++ G +W+EF NN R T
Sbjct: 187 VSKMMMVLG-AKWREFSTNNPLRGSAT 212
Score = 46 (21.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 211 AADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
AA K E+ W R + + G++ G+ RW++ N+ R
Sbjct: 1738 AATVTKKTNEI----WHRRHDYWLLAGIIQHGYARWQDI--QNDVR 1777
>UNIPROTKB|F1NH79 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02061139 EMBL:AADN02061140 EMBL:AADN02061141
EMBL:AADN02061142 EMBL:AADN02061143 IPI:IPI00598956
Ensembl:ENSGALT00000023339 OMA:DGEHEHQ Uniprot:F1NH79
Length = 1895
Score = 378 (138.1 bits), Expect = 2.1e-58, Sum P(3) = 2.1e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 782 SRAIIRENEFTFEDNAIRGGKKASRMKKEAAVKFHVLLTSYELITIDMAILGSIDWACLI 841
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 842 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 901
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 902 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 961
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 962 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 994
Score = 183 (69.5 bits), Expect = 2.9e-49, Sum P(2) = 2.9e-49
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 718 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 776
Score = 173 (66.0 bits), Expect = 2.1e-58, Sum P(3) = 2.1e-58
Identities = 34/68 (50%), Positives = 44/68 (64%)
Query: 1 MSLIKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEM 58
M +++P + P VK ++ P Y + TL YQLEGLNWL FSW G + ILADEM
Sbjct: 664 MRKLERPPETPTVDPTVKYDRQPEYLDVTGGTLHPYQLEGLNWLRFSWAQGTDTILADEM 723
Query: 59 GLGKTIQS 66
GLGKT+Q+
Sbjct: 724 GLGKTVQT 731
Score = 124 (48.7 bits), Expect = 2.1e-58, Sum P(3) = 2.1e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 734 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 778
Score = 47 (21.6 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 167 VSKMMMVLG-AKWREFSTNNPFK 188
Score = 46 (21.3 bits), Expect = 9.7e-17, Sum P(3) = 9.7e-17
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1705 YEIWHRRHDYWLLAGIINHGYARWQD 1730
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 377 (137.8 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 805 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 864
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 925 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 984
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 985 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1017
Score = 183 (69.5 bits), Expect = 3.8e-49, Sum P(2) = 3.8e-49
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 741 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 799
Score = 172 (65.6 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 690 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 749
Query: 62 KTIQS 66
KT+Q+
Sbjct: 750 KTVQT 754
Score = 124 (48.7 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 757 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 801
Score = 47 (21.6 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 191 VSKMMMVLG-AKWREFSTNNPFK 212
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1719 YEIWHRRHDYWLLAGIINHGYARWQD 1744
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 377 (137.8 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 812 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 871
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 932 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 991
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 992 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1024
Score = 183 (69.5 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 748 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 806
Score = 172 (65.6 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 697 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 756
Query: 62 KTIQS 66
KT+Q+
Sbjct: 757 KTVQT 761
Score = 124 (48.7 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 764 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 808
Score = 47 (21.6 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 198 VSKMMMVLG-AKWREFSTNNPFK 219
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1726 YEIWHRRHDYWLLAGIINHGYARWQD 1751
Score = 41 (19.5 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQL 36
K KKKP K+ KS K + L QL
Sbjct: 52 KKKKKPKKPRDPKIPKSKRQKKERVLLCRQL 82
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 377 (137.8 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 812 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 871
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 932 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 991
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 992 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1024
Score = 183 (69.5 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 748 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 806
Score = 172 (65.6 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 697 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 756
Query: 62 KTIQS 66
KT+Q+
Sbjct: 757 KTVQT 761
Score = 124 (48.7 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 764 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 808
Score = 47 (21.6 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 198 VSKMMMVLG-AKWREFSTNNPFK 219
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1726 YEIWHRRHDYWLLAGIINHGYARWQD 1751
Score = 40 (19.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQL 36
K KKKP K+ KS K + L QL
Sbjct: 52 KKKKKPKKPRDPKIPKSKRQKKERMLLCRQL 82
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 377 (137.8 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 812 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 871
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 932 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 991
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 992 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1024
Score = 183 (69.5 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 748 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 806
Score = 172 (65.6 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 697 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 756
Query: 62 KTIQS 66
KT+Q+
Sbjct: 757 KTVQT 761
Score = 124 (48.7 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 764 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 808
Score = 47 (21.6 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 198 VSKMMMVLG-AKWREFSTNNPFK 219
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1726 YEIWHRRHDYWLLAGIINHGYARWQD 1751
Score = 40 (19.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQL 36
K KKKP K+ KS K + L QL
Sbjct: 52 KKKKKPKKPRDPKIPKSKRQKKERMLLCRQL 82
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 377 (137.8 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 805 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 864
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 925 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 984
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 985 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1017
Score = 183 (69.5 bits), Expect = 3.9e-49, Sum P(2) = 3.9e-49
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 741 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 799
Score = 172 (65.6 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 690 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 749
Query: 62 KTIQS 66
KT+Q+
Sbjct: 750 KTVQT 754
Score = 124 (48.7 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 757 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 801
Score = 47 (21.6 bits), Expect = 7.4e-35, Sum P(2) = 7.4e-35
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 191 VSKMMMVLG-AKWREFSTNNPFK 212
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1729 YEIWHRRHDYWLLAGIINHGYARWQD 1754
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 377 (137.8 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 805 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 864
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 925 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 984
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 985 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1017
Score = 183 (69.5 bits), Expect = 3.9e-49, Sum P(2) = 3.9e-49
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 741 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 799
Score = 172 (65.6 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 690 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 749
Query: 62 KTIQS 66
KT+Q+
Sbjct: 750 KTVQT 754
Score = 124 (48.7 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 757 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 801
Score = 47 (21.6 bits), Expect = 7.4e-35, Sum P(2) = 7.4e-35
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 191 VSKMMMVLG-AKWREFSTNNPFK 212
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1729 YEIWHRRHDYWLLAGIINHGYARWQD 1754
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 377 (137.8 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 832 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 891
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 892 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 951
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 952 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 1011
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 1012 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1044
Score = 183 (69.5 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 768 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 826
Score = 172 (65.6 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 717 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 776
Query: 62 KTIQS 66
KT+Q+
Sbjct: 777 KTVQT 781
Score = 124 (48.7 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 784 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 828
Score = 47 (21.6 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 218 VSKMMMVLG-AKWREFSTNNPFK 239
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1746 YEIWHRRHDYWLLAGIINHGYARWQD 1771
Score = 40 (19.1 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQL 36
K KKKP K+ KS K + L QL
Sbjct: 72 KKKKKPKKPRDPKIPKSKRQKKERMLLCRQL 102
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 377 (137.8 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 834 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 893
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 894 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 953
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 954 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 1013
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 1014 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1046
Score = 183 (69.5 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 770 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 828
Score = 172 (65.6 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 719 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 778
Query: 62 KTIQS 66
KT+Q+
Sbjct: 779 KTVQT 783
Score = 124 (48.7 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 786 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 830
Score = 47 (21.6 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 218 VSKMMMVLG-AKWREFSTNNPFK 239
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1748 YEIWHRRHDYWLLAGIINHGYARWQD 1773
Score = 40 (19.1 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQL 36
K KKKP K+ KS K + L QL
Sbjct: 72 KKKKKPKKPRDPKIPKSKRQKKERLLLCRQL 102
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 377 (137.8 bits), Expect = 3.8e-58, Sum P(3) = 3.8e-58
Identities = 83/214 (38%), Positives = 117/214 (54%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W I
Sbjct: 833 SRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLI 892
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F N E F+
Sbjct: 893 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 952
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 953 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILT 1012
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ N +L+N +M+L+KCC HPYL
Sbjct: 1013 RNFEALN-ARGGGNQVSLLNVVMDLKKCCNHPYL 1045
Score = 183 (69.5 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 769 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 827
Score = 172 (65.6 bits), Expect = 3.8e-58, Sum P(3) = 3.8e-58
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKN--DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+++P + P VK E+ P Y + TL YQ+EGLNWL FSW G + ILADEMGLG
Sbjct: 718 LERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLG 777
Query: 62 KTIQS 66
KT+Q+
Sbjct: 778 KTVQT 782
Score = 124 (48.7 bits), Expect = 3.8e-58, Sum P(3) = 3.8e-58
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 785 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 829
Score = 47 (21.6 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN F+
Sbjct: 219 VSKMMMVLG-AKWREFSTNNPFK 240
Score = 46 (21.3 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1763 YEIWHRRHDYWLLAGIINHGYARWQD 1788
Score = 40 (19.1 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQL 36
K KKKP K+ KS K + L QL
Sbjct: 73 KKKKKPKKPRDPKIPKSKRQKKERLLLCRQL 103
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 415 (151.1 bits), Expect = 4.7e-58, Sum P(3) = 4.7e-58
Identities = 86/197 (43%), Positives = 118/197 (59%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
K +F K KD Y F VL+TT+E I+SD WR I+DE HR+KN K
Sbjct: 989 KYEF-KHKDTYLFEVLLTTYETIMSDHSSFVRVPWRALILDEGHRIKNDKSKVLSKLKSI 1047
Query: 373 XXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESEVNXXXXXXXX 432
+GTPLQN++ EL+++LNFL+P +F++ + F+ E+ LK ES+V+
Sbjct: 1048 KTEHSIILTGTPLQNDMKELWTMLNFLDPDKFNSCQEFLDEYSDLKEESQVSKLHQLLSP 1107
Query: 433 XXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTS-ANVPNLMN 491
EDVE SI KEETV++VEL++ QK YYR ILERN FLS+G N+P L N
Sbjct: 1108 YLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILERNREFLSRGIKQKTNLPKLSN 1167
Query: 492 TMMELRKCCIHPYLLNG 508
M+++RK C HP+L+ G
Sbjct: 1168 IMIQIRKVCNHPFLIPG 1184
Score = 184 (69.8 bits), Expect = 9.7e-53, Sum P(2) = 9.7e-53
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV 127
R+ +LADEMGLGKTIQS+ F+ + ++ GI+GPFLV+APLST+ NW +E WT + +V
Sbjct: 917 RSSLLADEMGLGKTIQSIAFLQYLSQSVGIKGPFLVVAPLSTLGNWHKEILKWTKMKTLV 976
Query: 128 YHAT 131
++ +
Sbjct: 977 FYGS 980
Score = 143 (55.4 bits), Expect = 4.7e-58, Sum P(3) = 4.7e-58
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 3 LIKKPKK---KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMG 59
L+ +PKK +P E P ++++ +L+ +Q+EG WL + W++ R+ +LADEMG
Sbjct: 867 LLDQPKKYVNRPTKLPIFNNELVPKFQDNLSLKEFQVEGFLWLSYCWYHCRSSLLADEMG 926
Query: 60 LGKTIQSLTRNCILADEMGL 79
LGKTIQS+ L+ +G+
Sbjct: 927 LGKTIQSIAFLQYLSQSVGI 946
Score = 121 (47.7 bits), Expect = 4.7e-58, Sum P(3) = 4.7e-58
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRK 195
GI+GPFLV+APLST+ NW +E WT + +V++G ++
Sbjct: 945 GIKGPFLVVAPLSTLGNWHKEILKWTKMKTLVFYGSQE 982
Score = 51 (23.0 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 221 VLYGNWSRSECFKVERGLLTFGWGRWKE 248
++ +W++S+ K + LL G+ RWK+
Sbjct: 1722 IINASWNKSQKDKFKSILLKVGFHRWKK 1749
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 373 (136.4 bits), Expect = 3.4e-57, Sum P(3) = 3.4e-57
Identities = 83/215 (38%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K +K++ KFHVL+T++E+I D L +W +
Sbjct: 822 SRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFHVLLTSYELITIDQAILGSIDWACLV 881
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 882 VDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 941
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K + K E +V VEL+ +QKKYY+ IL
Sbjct: 942 EEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILT 1001
Query: 472 RNFSFLS-KGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ +G N +L+N +M+L+KCC HPYL
Sbjct: 1002 RNFEALNTRG--GGNQVSLLNVVMDLKKCCNHPYL 1034
Score = 183 (69.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+Q+ F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y
Sbjct: 758 ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY 816
Score = 167 (63.8 bits), Expect = 3.4e-57, Sum P(3) = 3.4e-57
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKNDN--TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
++P P +K ++ P Y + TL YQLEGLNWL FSW G + ILADEMGLGK
Sbjct: 708 ERPPANPVVDPTIKFDRQPDYLDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGK 767
Query: 63 TIQS 66
T+Q+
Sbjct: 768 TVQT 771
Score = 124 (48.7 bits), Expect = 3.4e-57, Sum P(3) = 3.4e-57
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REFE W D+ V+ Y G
Sbjct: 774 FLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVG 818
Score = 44 (20.5 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 234 VERGLLTFGWGRWKEFLANNEFR 256
V + ++ G +W+EF NN R
Sbjct: 191 VSKMMMVLG-AKWREFSTNNPMR 212
Score = 44 (20.5 bits), Expect = 7.9e-16, Sum P(3) = 7.9e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKE 248
Y W R + + G++ G+ RW++
Sbjct: 1769 YEIWHRRHDYWLLAGIIFHGYARWQD 1794
Score = 39 (18.8 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKG 480
EDV++ I +EE+V + + +Y E L KG
Sbjct: 1302 EDVDREIIKQEESVDPDYWEKLLRHHYEQQQEDLARHLGKG 1342
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 385 (140.6 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 778 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 837
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 838 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 897
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 898 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 957
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 958 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 990
Score = 179 (68.1 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 714 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 765
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 766 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 797
Score = 163 (62.4 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 666 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 725
Query: 65 QSL 67
Q++
Sbjct: 726 QTI 728
Score = 114 (45.2 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 730 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 774
Score = 50 (22.7 bits), Expect = 5.2e-36, Sum P(2) = 5.2e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 141 MMTILGAKWREFSANNPFK 159
Score = 45 (20.9 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1663 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1692
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 385 (140.6 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 818 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 877
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 878 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 937
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 938 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 997
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 998 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1030
Score = 179 (68.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 754 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 805
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 806 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 837
Score = 163 (62.4 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 706 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 765
Query: 65 QSL 67
Q++
Sbjct: 766 QTI 768
Score = 114 (45.2 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 770 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 814
Score = 50 (22.7 bits), Expect = 5.8e-36, Sum P(2) = 5.8e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 181 MMTILGAKWREFSANNPFK 199
Score = 45 (20.9 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1738 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1767
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 385 (140.6 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 820 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 879
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 880 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 939
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 940 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 999
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 1000 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1032
Score = 179 (68.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 756 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 807
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 808 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 839
Score = 163 (62.4 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 708 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 767
Query: 65 QSL 67
Q++
Sbjct: 768 QTI 770
Score = 114 (45.2 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 772 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 816
Score = 50 (22.7 bits), Expect = 5.8e-36, Sum P(2) = 5.8e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 184 MMTILGAKWREFSANNPFK 202
Score = 45 (20.9 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1738 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1767
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 385 (140.6 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 822 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 881
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 882 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 941
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 942 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 1001
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 1002 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1034
Score = 179 (68.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 758 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 809
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 810 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 841
Score = 163 (62.4 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 710 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 769
Query: 65 QSL 67
Q++
Sbjct: 770 QTI 772
Score = 114 (45.2 bits), Expect = 5.8e-57, Sum P(3) = 5.8e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 774 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 818
Score = 50 (22.7 bits), Expect = 5.8e-36, Sum P(2) = 5.8e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 185 MMTILGAKWREFSANNPFK 203
Score = 45 (20.9 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1740 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1769
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 385 (140.6 bits), Expect = 5.9e-57, Sum P(3) = 5.9e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 822 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 881
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 882 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 941
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 942 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 1001
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 1002 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1034
Score = 179 (68.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 758 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 809
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 810 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 841
Score = 163 (62.4 bits), Expect = 5.9e-57, Sum P(3) = 5.9e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 710 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 769
Query: 65 QSL 67
Q++
Sbjct: 770 QTI 772
Score = 114 (45.2 bits), Expect = 5.9e-57, Sum P(3) = 5.9e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 774 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 818
Score = 50 (22.7 bits), Expect = 5.8e-36, Sum P(2) = 5.8e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 185 MMTILGAKWREFSANNPFK 203
Score = 45 (20.9 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1742 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1771
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 385 (140.6 bits), Expect = 6.1e-57, Sum P(3) = 6.1e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 873 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 932
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 933 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 992
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 993 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 1052
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 1053 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1085
Score = 179 (68.1 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 809 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 860
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 861 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 892
Score = 163 (62.4 bits), Expect = 6.1e-57, Sum P(3) = 6.1e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 761 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 820
Query: 65 QSL 67
Q++
Sbjct: 821 QTI 823
Score = 114 (45.2 bits), Expect = 6.1e-57, Sum P(3) = 6.1e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 825 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 869
Score = 50 (22.7 bits), Expect = 5.9e-36, Sum P(2) = 5.9e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 236 MMTILGAKWREFSANNPFK 254
Score = 45 (20.9 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1758 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1787
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 385 (140.6 bits), Expect = 6.5e-57, Sum P(3) = 6.5e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 873 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 932
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 933 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 992
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 993 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 1052
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 1053 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1085
Score = 179 (68.1 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 809 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 860
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 861 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 892
Score = 163 (62.4 bits), Expect = 6.5e-57, Sum P(3) = 6.5e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 761 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 820
Query: 65 QSL 67
Q++
Sbjct: 821 QTI 823
Score = 114 (45.2 bits), Expect = 6.5e-57, Sum P(3) = 6.5e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 825 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 869
Score = 50 (22.7 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 236 MMTILGAKWREFSANNPFK 254
Score = 45 (20.9 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1792 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1821
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 385 (140.6 bits), Expect = 6.5e-57, Sum P(3) = 6.5e-57
Identities = 86/215 (40%), Positives = 119/215 (55%)
Query: 298 SRNMLQEYELFFRND-----KNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E E F ++ K F +K + KFHVL+T++E+I D L W +
Sbjct: 881 SRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLV 940
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 941 VDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 1000
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 1001 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILT 1060
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L S+G N +L+N MM+L+KCC HPYL
Sbjct: 1061 RNFEALNSRG--GGNQVSLLNIMMDLKKCCNHPYL 1093
Score = 179 (68.1 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 45/92 (48%), Positives = 56/92 (60%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++K G +GPFLV APLSTI NW+REF+ W
Sbjct: 817 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP-------- 868
Query: 131 TFVVLLQTGSKFFRICL---EF-FVDAVFKTG 158
F V+ TG K R + EF F D K G
Sbjct: 869 KFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 900
Score = 163 (62.4 bits), Expect = 6.5e-57, Sum P(3) = 6.5e-57
Identities = 34/63 (53%), Positives = 38/63 (60%)
Query: 7 PKKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P P VK E P + TL YQLEGLNWL FSW G + ILADEMGLGKTI
Sbjct: 769 PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTI 828
Query: 65 QSL 67
Q++
Sbjct: 829 QTI 831
Score = 114 (45.2 bits), Expect = 6.5e-57, Sum P(3) = 6.5e-57
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ +++K G +GPFLV APLSTI NW+REF+ W V+ Y G
Sbjct: 833 FLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTG 877
Score = 50 (22.7 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 244 MMTILGAKWREFSANNPFK 262
Score = 45 (20.9 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEF 255
W R + + G++ G+ RW++ + +F
Sbjct: 1799 WHRRHDYWLLAGIVLHGYARWQDIQNDAQF 1828
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 376 (137.4 bits), Expect = 5.9e-56, Sum P(3) = 5.9e-56
Identities = 82/211 (38%), Positives = 122/211 (57%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASR + Q+YE F N+K K KF+ L+TT+E+++ D L W ++DEAH
Sbjct: 710 ASREVCQQYE--FYNEK----KVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAH 763
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKN + +GTPLQN+V EL++LL+FL+P +F N + F+ +
Sbjct: 764 RLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKN 823
Query: 417 LKT--ESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
L + ESE+ +DVEKS+ PK E ++ VE++ +QK+YY+ ILERNF
Sbjct: 824 LSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNF 883
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
L+KG V +L+N ++EL+KCC HP+L
Sbjct: 884 HDLNKGVRGNQV-SLLNIVVELKKCCNHPFL 913
Score = 172 (65.6 bits), Expect = 5.3e-48, Sum P(2) = 5.3e-48
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKT+QS++ + + T I GPFLV+ PLST+ NW +EF W +N+IV
Sbjct: 645 NVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIV 704
Query: 128 YHAT 131
Y T
Sbjct: 705 YVGT 708
Score = 160 (61.4 bits), Expect = 5.9e-56, Sum P(3) = 5.9e-56
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 3 LIKKPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
++++ + K AS KL++ P + TLR YQLEGLN+L+ SW N N ILADEMGLGK
Sbjct: 598 MVEQQRTKGKAS-LRKLDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGK 656
Query: 63 TIQSLT 68
T+QS++
Sbjct: 657 TVQSVS 662
Score = 114 (45.2 bits), Expect = 5.9e-56, Sum P(3) = 5.9e-56
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRR 194
I GPFLV+ PLST+ NW +EF W +N+IVY G R
Sbjct: 673 IPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTR 709
Score = 41 (19.5 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 226 WSRSECFKVERGLLTFGWGRWKE 248
W++ + ++ G+L G+G W++
Sbjct: 1388 WNQIDDARLLLGILYHGFGNWEK 1410
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 351 (128.6 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 83/221 (37%), Positives = 116/221 (52%)
Query: 291 GLKSASASRNMLQEYELFF-----RND-KNQFIKEKDLYKFHVLITTFEIIISDCLELKD 344
GL+ A R +L+E+E F R+ K +K + KFHVL+T++E I D L
Sbjct: 684 GLRDA---RVVLREHEFSFVEGAVRSGPKASKMKTTENMKFHVLLTSYETINMDKTILSS 740
Query: 345 FNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQF 404
W ++DEAHRLKN +GTPLQNN+ ELF LLNFL ++F
Sbjct: 741 IEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERF 800
Query: 405 SNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKK 464
+ EAF +EF ++ E ++ DV + K E +V VEL+ +QKK
Sbjct: 801 NQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKK 860
Query: 465 YYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
+Y+ IL RNF L+ + +LMN +MEL+KCC HPYL
Sbjct: 861 WYKNILTRNFDALNVKNGGTQM-SLMNVLMELKKCCNHPYL 900
Score = 184 (69.8 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+ ILADEMGLGKT+QSLTF+ ++ K G +GPFL+ APLSTI NW+RE E W D V+
Sbjct: 622 DAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVT 681
Query: 128 Y 128
Y
Sbjct: 682 Y 682
Score = 164 (62.8 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 36/66 (54%), Positives = 40/66 (60%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKNDN--TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
KK KK+ K E P Y + L YQLEGLNWL W NG + ILADEMGLGK
Sbjct: 574 KKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGK 633
Query: 63 TIQSLT 68
T+QSLT
Sbjct: 634 TVQSLT 639
Score = 114 (45.2 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRR 194
F+ ++ K G +GPFL+ APLSTI NW+RE E W D V+ Y G R
Sbjct: 640 FLYSLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVTYVGLR 686
Score = 52 (23.4 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 195 KKLSRRDKERLRLKY-VAADYVPKDGEVLY-----G-NWSRSECF 232
KK +R+K +R KY V DYV + G L+ G NW R C+
Sbjct: 574 KKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLNWLR-HCW 617
Score = 40 (19.1 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 215 VPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLAN-NEFRN 257
V ++G+ Y W R + + G++ G+GR F AN N+ N
Sbjct: 1518 VARNGKE-YEIWYRRHDYWLLAGVVVHGYGR---FQANFNDIIN 1557
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 351 (128.6 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 83/221 (37%), Positives = 116/221 (52%)
Query: 291 GLKSASASRNMLQEYELFF-----RND-KNQFIKEKDLYKFHVLITTFEIIISDCLELKD 344
GL+ A R +L+E+E F R+ K +K + KFHVL+T++E I D L
Sbjct: 684 GLRDA---RVVLREHEFSFVEGAVRSGPKASKMKTTENMKFHVLLTSYETINMDKTILSS 740
Query: 345 FNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQF 404
W ++DEAHRLKN +GTPLQNN+ ELF LLNFL ++F
Sbjct: 741 IEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERF 800
Query: 405 SNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKK 464
+ EAF +EF ++ E ++ DV + K E +V VEL+ +QKK
Sbjct: 801 NQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKK 860
Query: 465 YYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
+Y+ IL RNF L+ + +LMN +MEL+KCC HPYL
Sbjct: 861 WYKNILTRNFDALNVKNGGTQM-SLMNVLMELKKCCNHPYL 900
Score = 184 (69.8 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+ ILADEMGLGKT+QSLTF+ ++ K G +GPFL+ APLSTI NW+RE E W D V+
Sbjct: 622 DAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVT 681
Query: 128 Y 128
Y
Sbjct: 682 Y 682
Score = 164 (62.8 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 36/66 (54%), Positives = 40/66 (60%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKNDN--TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
KK KK+ K E P Y + L YQLEGLNWL W NG + ILADEMGLGK
Sbjct: 574 KKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGK 633
Query: 63 TIQSLT 68
T+QSLT
Sbjct: 634 TVQSLT 639
Score = 114 (45.2 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRR 194
F+ ++ K G +GPFL+ APLSTI NW+RE E W D V+ Y G R
Sbjct: 640 FLYSLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVTYVGLR 686
Score = 52 (23.4 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 195 KKLSRRDKERLRLKY-VAADYVPKDGEVLY-----G-NWSRSECF 232
KK +R+K +R KY V DYV + G L+ G NW R C+
Sbjct: 574 KKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLNWLR-HCW 617
Score = 40 (19.1 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 215 VPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLAN-NEFRN 257
V ++G+ Y W R + + G++ G+GR F AN N+ N
Sbjct: 1518 VARNGKE-YEIWYRRHDYWLLAGVVVHGYGR---FQANFNDIIN 1557
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 356 (130.4 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 80/214 (37%), Positives = 114/214 (53%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E+E F + K IK + KFHVL+T++E I D L +W +
Sbjct: 702 SRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALV 761
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN +GTPLQNN+ ELF LLNFL P +F+ E+F
Sbjct: 762 VDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFT 821
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
+EF ++ E ++ DV + K+E +V VEL+ +QKKYY+ IL
Sbjct: 822 AEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILT 881
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ + +L+N +MEL+KCC HPYL
Sbjct: 882 RNFDALNVKNGGTQM-SLINIIMELKKCCNHPYL 914
Score = 183 (69.5 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+ ILADEMGLGKT+QSLTF+ + K G +GPFL+ APLSTI NW+RE E W D V+
Sbjct: 636 DAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVT 695
Query: 128 Y 128
Y
Sbjct: 696 Y 696
Score = 152 (58.6 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 32/63 (50%), Positives = 38/63 (60%)
Query: 8 KKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
KK+ K E P + + L YQLEG+NWL W NG + ILADEMGLGKT+Q
Sbjct: 591 KKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQ 650
Query: 66 SLT 68
SLT
Sbjct: 651 SLT 653
Score = 116 (45.9 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG-RRKKLSRRDKE 203
F+ + K G +GPFL+ APLSTI NW+RE E W D V+ Y G R ++ R+ E
Sbjct: 654 FLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHE 710
Score = 42 (19.8 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 209 YVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWK 247
++ + V ++G+ Y W R F + + +G+GR++
Sbjct: 1499 WINEEKVARNGKE-YEIWHRRHDFWLLAAVAVYGYGRYQ 1536
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 356 (130.4 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 80/214 (37%), Positives = 114/214 (53%)
Query: 298 SRNMLQEYELFFRND------KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR +++E+E F + K IK + KFHVL+T++E I D L +W +
Sbjct: 702 SRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALV 761
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN +GTPLQNN+ ELF LLNFL P +F+ E+F
Sbjct: 762 VDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFT 821
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
+EF ++ E ++ DV + K+E +V VEL+ +QKKYY+ IL
Sbjct: 822 AEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILT 881
Query: 472 RNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L+ + +L+N +MEL+KCC HPYL
Sbjct: 882 RNFDALNVKNGGTQM-SLINIIMELKKCCNHPYL 914
Score = 183 (69.5 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+ ILADEMGLGKT+QSLTF+ + K G +GPFL+ APLSTI NW+RE E W D V+
Sbjct: 636 DAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVT 695
Query: 128 Y 128
Y
Sbjct: 696 Y 696
Score = 152 (58.6 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 32/63 (50%), Positives = 38/63 (60%)
Query: 8 KKKPPASDWVKLEKSP--VYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
KK+ K E P + + L YQLEG+NWL W NG + ILADEMGLGKT+Q
Sbjct: 591 KKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQ 650
Query: 66 SLT 68
SLT
Sbjct: 651 SLT 653
Score = 116 (45.9 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG-RRKKLSRRDKE 203
F+ + K G +GPFL+ APLSTI NW+RE E W D V+ Y G R ++ R+ E
Sbjct: 654 FLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHE 710
Score = 42 (19.8 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 209 YVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWK 247
++ + V ++G+ Y W R F + + +G+GR++
Sbjct: 1499 WINEEKVARNGKE-YEIWHRRHDFWLLAAVAVYGYGRYQ 1536
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 364 (133.2 bits), Expect = 8.6e-53, Sum P(3) = 8.6e-53
Identities = 78/210 (37%), Positives = 119/210 (56%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDL-YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
+R +++++E+ F + ++E YKF+V++T++E I D L +W ++DEAH
Sbjct: 353 ARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAH 412
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RL++ K +GTPLQNN+ ELF LLNFL +F++ + F +EF
Sbjct: 413 RLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTD 472
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
+ E +V DV KS+ PK E +V VEL+++QKK+Y+ IL +NF
Sbjct: 473 VSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKA 532
Query: 477 LS-KGTTSANVPNLMNTMMELRKCCIHPYL 505
L+ KG V +L+N MM+LRKCC HPYL
Sbjct: 533 LNQKG--GGRVCSLLNIMMDLRKCCNHPYL 560
Score = 175 (66.7 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQ++ F+ ++FK G RGPFL+ PLST+ NW+RE E W +L + Y
Sbjct: 289 ILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTY 347
Score = 129 (50.5 bits), Expect = 8.6e-53, Sum P(3) = 8.6e-53
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 18 KLEKSPVYKNDNTLRA--YQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
K E PV+ + L+ +Q+EG++WL +SW G ILADEMGLGKTIQ++
Sbjct: 252 KYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTV 303
Score = 113 (44.8 bits), Expect = 8.6e-53, Sum P(3) = 8.6e-53
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ ++FK G RGPFL+ PLST+ NW+RE E W +L + Y G
Sbjct: 305 FLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVG 349
Score = 39 (18.8 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 174 NWQREFEAWTDLNVIVYHGRRKKLSRRDKERLR 206
+W+RE ++ LN + ++ + S + ++R R
Sbjct: 210 SWERESDSIPGLNQAIALYKKLRSSNKGRQRDR 242
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 351 (128.6 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 78/212 (36%), Positives = 116/212 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDL----YKFHVLITTFEIIISDCLELKDFNWRLCIID 353
SR +++E EL F + K L YKF+VL+T++E+I D L +W + ++D
Sbjct: 816 SRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVD 875
Query: 354 EAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSE 413
EAHRLK+ K +GTPLQNN+ ELF LLNFL +F++ +AF E
Sbjct: 876 EAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGE 935
Query: 414 FGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473
F + E +V DV K++ K E +V VEL+ +QKK+Y+ IL +N
Sbjct: 936 FADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKN 995
Query: 474 FSFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
+ L+ + + +L+N MM+L+KCC HPYL
Sbjct: 996 YEALNSKSGGGSC-SLINIMMDLKKCCNHPYL 1026
Score = 185 (70.2 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 37/59 (62%), Positives = 45/59 (76%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQ++TF+ +++K G RGPFLV PLST+ NW+REFE W D I Y
Sbjct: 752 ILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITY 810
Score = 150 (57.9 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 7 PKKKPPASDWVKLEKSPVYKNDN--TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTI 64
P +KP K E P + L YQ+EG+NWL +SW G + ILADEMGLGKTI
Sbjct: 704 PPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTI 763
Query: 65 QSLT 68
Q++T
Sbjct: 764 QTVT 767
Score = 118 (46.6 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 150 FVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++K G RGPFLV PLST+ NW+REFE W D I Y G
Sbjct: 768 FLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIG 812
Score = 58 (25.5 bits), Expect = 9.2e-15, Sum P(3) = 9.2e-15
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 223 YGNWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
Y W R + + G++T G+GRW++ N+ R
Sbjct: 1756 YEIWHRRHDYWLLAGIVTHGYGRWQDI--QNDIR 1787
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 103/175 (58%), Positives = 123/175 (70%)
Query: 334 IIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELF 393
+I++DC ELK +W IIDEAHRLKNRNCK +GTPLQN+V ELF
Sbjct: 1 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 60
Query: 394 SLLNFLEPQQFSNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETV 453
SLLNFLEP QF + AF+ EFG LKTE +V +DVEK++APK+ET+
Sbjct: 61 SLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETI 120
Query: 454 VEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+EVELTNIQKKYYR ILE+NFSFL+KG N+PNL+NTMMELRKCC HPYL+NG
Sbjct: 121 IEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLING 175
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 362 (132.5 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 77/221 (34%), Positives = 121/221 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKD----------LYKFHVLITTFEIIISDCLELKDFNW 347
+R +++E+E + D+ + K+K KF VL+T++E+I D LK W
Sbjct: 357 ARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKW 416
Query: 348 RLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNN 407
I+DE HRLKN++ K +GTPLQNN++ELF L++FL+ +F +
Sbjct: 417 ECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSL 476
Query: 408 EAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
E F EF + E +++ +DV K + PK+E ++ V+L+++QK+YY+
Sbjct: 477 EEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYK 536
Query: 468 GILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
I RN+ L+K A + +L N MMELRK C HPY+L G
Sbjct: 537 AIFTRNYQVLTK-KGGAQI-SLNNIMMELRKVCCHPYMLEG 575
Score = 171 (65.3 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHA 130
ILADEMGLGKTIQS+ + ++F+ + P LVIAPLST+ NW+REF W +NV++Y
Sbjct: 295 ILADEMGLGKTIQSIALLASLFEENLI-PHLVIAPLSTLRNWEREFATWAPQMNVVMYFG 353
Query: 131 T 131
T
Sbjct: 354 T 354
Score = 137 (53.3 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
K+ P D+ + + +P + L YQLEGLN+L FSW + ILADEMGLGKTIQS+
Sbjct: 253 KRNPR-DFQQFDHTPEFLK-GLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA 310
Query: 69 RNCILADE 76
L +E
Sbjct: 311 LLASLFEE 318
Score = 106 (42.4 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 162 PFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
P LVIAPLST+ NW+REF W +NV++Y G
Sbjct: 322 PHLVIAPLSTLRNWEREFATWAPQMNVVMYFG 353
Score = 43 (20.2 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 236 RGLLTFGWGRWKEFLANNE 254
R +L G+GRW+ + + E
Sbjct: 1079 RAVLKHGYGRWQAIVDDKE 1097
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 396 (144.5 bits), Expect = 5.0e-51, Sum P(2) = 5.0e-51
Identities = 88/215 (40%), Positives = 121/215 (56%)
Query: 298 SRNMLQEYELFF-----RNDKNQF-IKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCI 351
SR++++E E F R+ K F +K++ KFHVL+T++E+I D L W +
Sbjct: 718 SRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLV 777
Query: 352 IDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFM 411
+DEAHRLKN K +GTPLQNN+ ELF LLNFL P++F+N E F+
Sbjct: 778 VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 837
Query: 412 SEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
EF + E ++ DV K++ K E +V VEL+ +QKKYY+ IL
Sbjct: 838 EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT 897
Query: 472 RNFSFL-SKGTTSANVPNLMNTMMELRKCCIHPYL 505
RNF L SKG N +L+N MM+L+KCC HPYL
Sbjct: 898 RNFEALNSKG--GGNQVSLLNIMMDLKKCCNHPYL 930
Score = 181 (68.8 bits), Expect = 5.0e-51, Sum P(2) = 5.0e-51
Identities = 39/80 (48%), Positives = 47/80 (58%)
Query: 4 IKKPKKKPPASDWVKLEKSPVY--KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
++KP + P VK +K P Y TL YQLEGLNWL FSW G + ILADEMGLG
Sbjct: 602 LEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLG 661
Query: 62 KTIQSLTRNCILADEMGLGK 81
KT+Q++ L E G K
Sbjct: 662 KTVQTIVFLYSLYKEQGHSK 681
Score = 116 (45.9 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 45/160 (28%), Positives = 73/160 (45%)
Query: 42 LMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPF 101
L ++N R +L ++ + ++ L + E L K ++ VD K + P+
Sbjct: 568 LKLLYWNHRELMLGEDT---RPLKKLNKKGKKLKEEKLEKPPET-PLVDPTVKFD-KQPW 622
Query: 102 LVIAPLSTIPNWQREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKT-G-I 159
+ A T+ +Q E W L T +L + F+ +++K G
Sbjct: 623 YIDATGGTLHPYQLEGLNW--LRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHS 680
Query: 160 RGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLS 198
+GP+LV APLSTI NW+REFE W D V+ Y G ++ S
Sbjct: 681 KGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRS 720
Score = 53 (23.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 222 LYGNWSRSECFKVERGLLTFGWGRWKE 248
+Y W R + + G++T G+ RW++
Sbjct: 1652 IYDIWHRRHDYWLLAGIVTHGYARWQD 1678
Score = 49 (22.3 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 238 LLTFGWGRWKEFLANNEFR 256
++T +W+EF ANN F+
Sbjct: 114 MMTVLGAKWREFSANNPFK 132
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 352 (129.0 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 76/208 (36%), Positives = 114/208 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR++++ YE + N+ K+K F+VL+TT++ I+ D L W +DEAHR
Sbjct: 841 SRDIIRLYEFY---TTNRLGKKK--LNFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHR 895
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN +GTPLQN++ EL++LLNFL P +F++ + F ++ L
Sbjct: 896 LKNSESVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQYSDL 955
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
K ++ +DVEKS+ PK E ++ V+L+N+QKKYY+ IL +NF L
Sbjct: 956 KENDQIAQLHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQEL 1015
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYL 505
+KG L+N M EL+K C HPYL
Sbjct: 1016 NKG--KGEKTTLLNIMTELKKTCNHPYL 1041
Score = 200 (75.5 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKTIQ+++F+ +F + I+GPFLV+ PLSTI NWQREF W +NVIV
Sbjct: 775 NVILADEMGLGKTIQTISFLSYLFNEQDIKGPFLVVVPLSTIENWQREFAKWAPAMNVIV 834
Query: 128 YHAT 131
Y T
Sbjct: 835 YTGT 838
Score = 171 (65.3 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 35/71 (49%), Positives = 46/71 (64%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
KK + KL+ P + + TLR YQ+EGLNWL+ SW N N ILADEMGLGKTIQ+++
Sbjct: 733 KKRLDQGFTKLDTQPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTIS 792
Query: 69 RNCILADEMGL 79
L +E +
Sbjct: 793 FLSYLFNEQDI 803
Score = 130 (50.8 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
Identities = 38/96 (39%), Positives = 52/96 (54%)
Query: 107 LSTIPNW-----QREFEAWTDLNVIVY---HATFVVLLQTGSKFFRICLEFFVDAVF-KT 157
L T P+W R+++ LN +V+ + T V+L I F+ +F +
Sbjct: 743 LDTQPSWISAGTLRDYQM-EGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQ 801
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
I+GPFLV+ PLSTI NWQREF W +NVIVY G
Sbjct: 802 DIKGPFLVVVPLSTIENWQREFAKWAPAMNVIVYTG 837
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 328 (120.5 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 572 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 623
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 624 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 683
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 684 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 742
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 743 AKGTRGST-SGFLNIVMELKKCCNHCYLI 770
Score = 188 (71.2 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 477 AYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 536
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 537 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 566
Score = 153 (58.9 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 461 KALKQRPR--FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 518
Query: 64 IQSLT 68
IQ+++
Sbjct: 519 IQTIS 523
Score = 120 (47.3 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 568
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 333 (122.3 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 77/209 (36%), Positives = 113/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++EYE K KF+ LITT+EI++ D L +W +DEAHR
Sbjct: 572 SRNMIREYEWIHSQSKR--------LKFNALITTYEILLKDKAVLGSISWAFLGVDEAHR 623
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 624 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 683
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 684 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 742
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKGT + +N +MEL+KCC H YL+
Sbjct: 743 SKGTRGST-SGFLNIVMELKKCCNHCYLI 770
Score = 192 (72.6 bits), Expect = 4.7e-43, Sum P(2) = 4.7e-43
Identities = 43/90 (47%), Positives = 58/90 (64%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
S+ N L D GL S +N ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 477 SYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 536
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFLV+ PLST+ +WQREFE W ++NV+VY
Sbjct: 537 PFLVVVPLSTLTSWQREFEVWAPEINVVVY 566
Score = 151 (58.2 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 16 WVKLEKSPVY-KNDNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y ++N LR YQLEGLNWL SW + ILADEMGLGKTIQ+++
Sbjct: 469 FVALKKQPSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTIS 523
Score = 122 (48.0 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFLV+ PLST+ +WQREFE W ++NV+VY G
Sbjct: 536 GPFLVVVPLSTLTSWQREFEVWAPEINVVVYIG 568
Score = 38 (18.4 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 225 NWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
+W E ++ G+ G+G W+ + E +
Sbjct: 1264 DWGVEEDSRLLVGIYEHGYGNWELIKTDPELK 1295
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 328 (120.5 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 570 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 621
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 622 LKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 681
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 682 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 740
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 741 AKGTRGST-SGFLNIVMELKKCCNHCYLI 768
Score = 188 (71.2 bits), Expect = 4.3e-42, Sum P(2) = 4.3e-42
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 475 TYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 534
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 535 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 564
Score = 153 (58.9 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 459 KALKQRPR--FVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 516
Query: 64 IQSLT 68
IQ+++
Sbjct: 517 IQTIS 521
Score = 120 (47.3 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 566
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 328 (120.5 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 539 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 590
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 591 LKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 650
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 651 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 709
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 710 AKGTRGST-SGFLNIVMELKKCCNHCYLI 737
Score = 188 (71.2 bits), Expect = 7.6e-42, Sum P(2) = 7.6e-42
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 444 TYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 503
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 504 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 533
Score = 153 (58.9 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 428 KALKQRPR--FVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 485
Query: 64 IQSLT 68
IQ+++
Sbjct: 486 IQTIS 490
Score = 120 (47.3 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 503 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 535
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 328 (120.5 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 559 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 610
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 611 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 670
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 671 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 729
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 730 AKGTRGST-SGFLNIVMELKKCCNHCYLI 757
Score = 186 (70.5 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSL---TRNCILADEMGLGKTIQSLTFVDAVF-KTGIR 98
++ G N L D GL S + + ILADEMGLGKTIQ+++F+ +F + +
Sbjct: 463 AYLGGENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLY 522
Query: 99 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
GPFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 523 GPFLIVVPLSTLTSWQREFEIWAPEINVVVY 553
Score = 152 (58.6 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 37/66 (56%), Positives = 44/66 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNC-ILADEMGLGK 62
K K+ P +V L+K P Y +N LR YQLEGLNWL SW N N ILADEMGLGK
Sbjct: 447 KALKQRPR--FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGK 504
Query: 63 TIQSLT 68
TIQ+++
Sbjct: 505 TIQTIS 510
Score = 120 (47.3 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 523 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 555
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 328 (120.5 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 570 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 621
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 622 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 681
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 682 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 740
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 741 AKGTRGST-SGFLNIVMELKKCCNHCYLI 768
Score = 193 (73.0 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 42/90 (46%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S +N ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 475 AYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 534
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 535 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 564
Score = 153 (58.9 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 459 KALKQRPR--FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKT 516
Query: 64 IQSLT 68
IQ+++
Sbjct: 517 IQTIS 521
Score = 120 (47.3 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 566
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 328 (120.5 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 573 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 624
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 625 LKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 684
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 685 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 743
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 744 AKGTRGST-SGFLNIVMELKKCCNHCYLI 771
Score = 188 (71.2 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 478 TYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 537
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 538 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 567
Score = 153 (58.9 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 462 KALKQRPR--FVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 519
Query: 64 IQSLT 68
IQ+++
Sbjct: 520 IQTIS 524
Score = 120 (47.3 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 537 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 569
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 328 (120.5 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 572 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 623
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 624 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 683
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 684 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 742
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 743 AKGTRGST-SGFLNIVMELKKCCNHCYLI 770
Score = 188 (71.2 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 477 AYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 536
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 537 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 566
Score = 153 (58.9 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 461 KALKQRPR--FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 518
Query: 64 IQSLT 68
IQ+++
Sbjct: 519 IQTIS 523
Score = 120 (47.3 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 568
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 328 (120.5 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 583 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 634
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 635 LKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 694
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 695 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 753
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 754 AKGTRGST-SGFLNIVMELKKCCNHCYLI 781
Score = 188 (71.2 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 488 TYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 547
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 548 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 577
Score = 153 (58.9 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 472 KALKQRPR--FVALKKQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 529
Query: 64 IQSLT 68
IQ+++
Sbjct: 530 IQTIS 534
Score = 120 (47.3 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 547 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 579
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 328 (120.5 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 76/209 (36%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 577 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 628
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 629 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 688
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 689 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 747
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H YL+
Sbjct: 748 AKGTRGST-SGFLNIVMELKKCCNHCYLI 775
Score = 187 (70.9 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 482 AYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 541
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 542 PFLIVVPLSTLTSWQREFEIWAPEVNVVVY 571
Score = 153 (58.9 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 466 KALKQRPR--FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 523
Query: 64 IQSLT 68
IQ+++
Sbjct: 524 IQTIS 528
Score = 119 (46.9 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 541 GPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIG 573
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 323 (118.8 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 75/209 (35%), Positives = 112/209 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRN ++EYE K KF+ LITT+EI++ D L NW +DEAHR
Sbjct: 552 SRNTIREYEWIHSQTKR--------LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHR 603
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++F E F + G+
Sbjct: 604 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKG 663
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E+ +DVEKS+ K E ++ VE++ +QK+YY+ IL RN+ L
Sbjct: 664 R-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL 722
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
+KGT + +N +MEL+KCC H +L+
Sbjct: 723 AKGTRGST-SGFLNIVMELKKCCNHCHLI 750
Score = 188 (71.2 bits), Expect = 5.0e-41, Sum P(2) = 5.0e-41
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 45 SWFNGRNCILADEM--GLGKTIQSLTRN--CILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
++ G N L D GL S ++ ILADEMGLGKTIQ+++F+ +F + + G
Sbjct: 457 AYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYG 516
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQREFE W ++NV+VY
Sbjct: 517 PFLIVVPLSTLTSWQREFEIWAPEINVVVY 546
Score = 153 (58.9 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 6 KPKKKPPASDWVKLEKSPVYKN-DNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
K K+ P +V L+K P Y +N LR YQLEGLNWL SW + ILADEMGLGKT
Sbjct: 441 KALKQRPR--FVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKT 498
Query: 64 IQSLT 68
IQ+++
Sbjct: 499 IQTIS 503
Score = 120 (47.3 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+ +WQREFE W ++NV+VY G
Sbjct: 516 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIG 548
Score = 38 (18.4 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 224 GNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEY 263
G+W R F G WG + ++++ W +++
Sbjct: 1620 GDWQRERKFNYGGGNSNLPWGSDR----HHQYEQHWYKDH 1655
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 336 (123.3 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 75/210 (35%), Positives = 114/210 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR+ ++EYE F+ N + K K KF+VL+TT+E I+ D EL W+ +DEAHR
Sbjct: 462 SRDTIREYE-FYTNPR---AKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHR 517
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN +GTPLQNN+ EL +L+NFL P +F+ ++ E
Sbjct: 518 LKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDE 577
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E ++ +DVEKS+ K E ++ VEL+++Q +YY+ IL +N+S L
Sbjct: 578 EQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL 637
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLN 507
+ G + +L+N M EL+K HPYL +
Sbjct: 638 TAGAKGGHF-SLLNIMNELKKASNHPYLFD 666
Score = 157 (60.3 bits), Expect = 2.2e-40, Sum P(3) = 2.2e-40
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVD-AVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ F+ +F GP +++ PLST+P W FE W DLN I
Sbjct: 396 NGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCIC 455
Query: 128 Y 128
Y
Sbjct: 456 Y 456
Score = 138 (53.6 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
KL P + LR +QL G+NW+ F W G N ILADEMGLGKT+Q++
Sbjct: 363 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTV 412
Score = 101 (40.6 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK 195
+F GP +++ PLST+P W FE W DLN I Y G +K
Sbjct: 419 IFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQK 461
Score = 75 (31.5 bits), Expect = 7.1e-14, Sum P(3) = 7.1e-14
Identities = 21/91 (23%), Positives = 41/91 (45%)
Query: 207 LKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNEFRNGWTEE-YVE 265
LK+ + PK + NW++ E K+ G+ +G+G W + + ++ F G T++ ++
Sbjct: 1156 LKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQ-IRDDPFL-GITDKIFLN 1213
Query: 266 EXXXXXXXXXXXXKSFSPTMSSGTDGLKSAS 296
E +PT S G+ +S
Sbjct: 1214 EVHNPVAKKSASSSDTTPTPSKKGKGITGSS 1244
Score = 38 (18.4 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 493 MMELRKCCIHPYLLNGKTYL 512
MME K C+H N K L
Sbjct: 1056 MMEAAKDCVHEEEKNRKEIL 1075
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 330 (121.2 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 75/211 (35%), Positives = 113/211 (53%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
+R ++EYEL+ +N K KF+VL+TT+E I+ D EL F W+ +DEAHR
Sbjct: 448 ARKTIREYELYNQNRKP---------KFNVLLTTYEYILKDKNELGAFKWQFLAVDEAHR 498
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN +GTPLQNNV EL +L NFL P +F+ ++ E
Sbjct: 499 LKNAESSLYEALKGFKVSNRLLITGTPLQNNVKELAALCNFLMPGKFTIDQEIDFETIDS 558
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E + +DVEKS+ K E ++ VEL++IQ +YY+ I+ +N++ L
Sbjct: 559 EQEQYIKDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAAL 618
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+ G + + +L+N M EL+K HPYL +G
Sbjct: 619 NAGNRGSQI-SLLNIMSELKKASNHPYLFDG 648
Score = 164 (62.8 bits), Expect = 7.2e-40, Sum P(2) = 7.2e-40
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 66 SLTRNCILADEMGLGKTIQSLTFVD-AVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DL 123
S N ILADEMGLGKT+Q++ F+ ++ GP LV+ PLST+P WQ FE W D+
Sbjct: 378 SRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPLSTVPAWQETFEKWAPDV 437
Query: 124 NVIVY 128
N + Y
Sbjct: 438 NCVYY 442
Score = 148 (57.2 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
KL K PV+ + LR +QL GLNW+ F W N ILADEMGLGKT+Q++
Sbjct: 349 KLFKQPVFIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTV 398
Score = 103 (41.3 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVY--HGRRKKLSR 199
GP LV+ PLST+P WQ FE W D+N + Y +G +K R
Sbjct: 412 GPHLVVVPLSTVPAWQETFEKWAPDVNCVYYLGNGEARKTIR 453
Score = 41 (19.5 bits), Expect = 9.0e-12, Sum P(3) = 9.0e-12
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 216 PKDGEVLYGNWSRSECFKVERGLLTFGWGRW 246
PK + W+ + + G+ FG+G W
Sbjct: 1128 PKSVQAWSCEWTAKDDAMLLVGVYKFGYGSW 1158
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 342 (125.4 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 76/208 (36%), Positives = 118/208 (56%)
Query: 308 FFRN-DKNQFIKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F N ++ + I+E+ L KF + +T+FE+ I + L+ F+WR IIDEAHR+KN N
Sbjct: 274 FLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSL 333
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESE-- 422
+GTPLQNN++EL++LLNFL P+ FS+ E F E+ Q+ E++
Sbjct: 334 LSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETF-DEWFQISGENDQQ 392
Query: 423 --VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKG 480
V DVEK + PK+ET+++V ++ +QK+YY+ +L+++ ++ G
Sbjct: 393 EVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGG 452
Query: 481 TTSANVPNLMNTMMELRKCCIHPYLLNG 508
L+N M+LRKCC HPYL G
Sbjct: 453 ---GERKRLLNIAMQLRKCCNHPYLFQG 477
Score = 128 (50.1 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
LR YQL GLNWL+ + NG N ILADEMGLGKT+Q+++ L + G+
Sbjct: 194 LRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGI 242
Score = 127 (49.8 bits), Expect = 9.3e-39, Sum P(2) = 9.3e-39
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQRE 116
N ILADEMGLGKT+Q+++ + + + GI GP +V+AP ST+ NW E
Sbjct: 214 NGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNE 261
Score = 74 (31.1 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERL 205
GI GP +V+AP ST+ NW E + L + + G ++ R +E L
Sbjct: 241 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEE-RRHIREEL 288
Score = 39 (18.8 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 440 EDVEKSIAPKEETVVEVE 457
ED+++ IA EE E++
Sbjct: 682 EDIDRIIAKGEEATAELD 699
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 313 (115.2 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 73/204 (35%), Positives = 112/204 (54%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK+Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 248 DKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 307
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL++LLNFL P F+++E F S F L + V
Sbjct: 308 IVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVE 367
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 368 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKLD 427
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 428 KM-RLLNILMQLRKCCNHPYLFDG 450
Score = 141 (54.7 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E+SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 152 RFEESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 202
Score = 129 (50.5 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 185 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRW 236
Score = 75 (31.5 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 213 IPGPHMVLVPKSTLHNWMNEFKRW 236
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 319 (117.4 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 75/218 (34%), Positives = 118/218 (54%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAH 356
ASRN+L+EYEL + + KF+VL+TT+E ++ D L FNW+ +DEAH
Sbjct: 531 ASRNVLKEYELMVDGNPRR-------PKFNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAH 583
Query: 357 RLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
RLKNR+ + +GTP+QNN+ EL +LL+FL P N +A M +
Sbjct: 584 RLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFLNPG-LVNVDADMDLNSE 642
Query: 417 LKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF 476
+E + VE + PK E ++ VEL+++Q +YY+ IL +N++
Sbjct: 643 AASEKLAELTKAISPFMLRRTKTK-VESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAA 701
Query: 477 LSKGTTSANVPNLMNTMMELRKCCIHPYLL-NGKTYLL 513
L++GT +L+N MMEL+K HP++ + +T +L
Sbjct: 702 LNEGTKGQK-QSLLNIMMELKKASNHPFMFPSAETKIL 738
Score = 167 (63.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIR-GPFLVIAPLSTIPNWQREFEAWT-DLNVI 126
RN +LADEMGLGKT+Q++ F+ + + GPF+V+ PLST+P+W F+ W+ DLN +
Sbjct: 465 RNVVLADEMGLGKTVQTVAFISWLRHVRRQQGPFVVVVPLSTMPSWAETFDNWSPDLNYV 524
Query: 127 VYH 129
VY+
Sbjct: 525 VYN 527
Score = 132 (51.5 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 4 IKKPKKKPPAS--DWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLG 61
+ K+ P+S + ++ +P + ++ L+ +Q++G+N++ F+W RN +LADEMGLG
Sbjct: 417 VSDKKESHPSSRKPFEPIKGTPSFLHNGQLKEFQVKGVNFMAFNWVKNRNVVLADEMGLG 476
Query: 62 KTIQSL 67
KT+Q++
Sbjct: 477 KTVQTV 482
Score = 111 (44.1 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 160 RGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
+GPF+V+ PLST+P+W F+ W+ DLN +VY+G
Sbjct: 495 QGPFVVVVPLSTMPSWAETFDNWSPDLNYVVYNG 528
Score = 43 (20.2 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 190 YHGRRKKLSRRDKERLRLKYVAADYVPKDGEVLY 223
Y G R + S+ +R RL +A+ VP EV +
Sbjct: 188 YGGSRARASKA--KRRRLLQASANNVPSHAEVRF 219
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 309 (113.8 bits), Expect = 4.9e-42, Sum P(3) = 4.9e-42
Identities = 73/234 (31%), Positives = 118/234 (50%)
Query: 280 SFSPTMSSGTDGLKSA-----SASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEI 334
++ T+++ T L S + SR ++EYE + + + KF++L+TT+E
Sbjct: 453 AWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKL-------KFNILLTTYEY 505
Query: 335 IISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFS 394
I+ D EL + W+ IDEAHRLKN +GTPLQNN+ EL S
Sbjct: 506 ILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELAS 565
Query: 395 LLNFLEPQQFSNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVV 454
L+NFL P +F + + + E ++ +DVEKS+ K E ++
Sbjct: 566 LVNFLMPGKFYIRDELNFDQPNAEQERDIRDLQERLQPFILRRLKKDVEKSLPSKSERIL 625
Query: 455 EVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
VEL+++Q ++Y+ IL +N+ L+ T +L+N ++EL+K HPYL G
Sbjct: 626 RVELSDMQTEWYKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPG 679
Score = 160 (61.4 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 33/61 (54%), Positives = 40/61 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVD-AVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ F+ V GPFL++ PLST+P WQ WT DLN I
Sbjct: 410 NGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSIC 469
Query: 128 Y 128
Y
Sbjct: 470 Y 470
Score = 149 (57.5 bits), Expect = 4.9e-42, Sum P(3) = 4.9e-42
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 10 KPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTR 69
+PP + KLEK P Y +R +QL G+NW+ + W N ILADEMGLGKT+Q++
Sbjct: 372 RPP---YRKLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTV-- 426
Query: 70 NCILA 74
C L+
Sbjct: 427 -CFLS 430
Score = 104 (41.7 bits), Expect = 4.9e-42, Sum P(3) = 4.9e-42
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
GPFL++ PLST+P WQ WT DLN I Y G
Sbjct: 440 GPFLIVVPLSTVPAWQETLANWTPDLNSICYTG 472
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 328 (120.5 bits), Expect = 7.3e-42, Sum P(2) = 7.3e-42
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 565 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 616
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 617 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 676
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 677 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 735
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 736 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 763
Score = 180 (68.4 bits), Expect = 7.3e-42, Sum P(2) = 7.3e-42
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 499 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 558
Query: 128 Y 128
Y
Sbjct: 559 Y 559
Score = 157 (60.3 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 461 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 516
Score = 108 (43.1 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 517 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 576
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 577 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 607
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 322 (118.4 bits), Expect = 7.3e-42, Sum P(3) = 7.3e-42
Identities = 76/206 (36%), Positives = 112/206 (54%)
Query: 310 RNDKNQFIKEKDL-YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXX 368
+ ++ + I++K L F V+I ++EIII + LK NW IIDEAHR+KN
Sbjct: 280 KEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQV 339
Query: 369 XXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESE----VN 424
+GTPLQNN++EL++LLNFL P FS+ + F F TE + V
Sbjct: 340 LREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVK 399
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL--SKGTT 482
DVE S+ PK+E + V ++++QKK+Y+ ILE++ + S G+
Sbjct: 400 QLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSK 459
Query: 483 SANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N MM+LRKCC HPYL +G
Sbjct: 460 ESKT-RLLNIMMQLRKCCNHPYLFDG 484
Score = 156 (60.0 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 72 ILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
ILADEMGLGKT+Q+++F+ + + I GPFLVIAP ST+ NW RE WT D+N +
Sbjct: 218 ILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFI 275
Score = 122 (48.0 bits), Expect = 7.3e-42, Sum P(3) = 7.3e-42
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 3 LIKKPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGK 62
L+K+ S + +SP Y N LR YQ++G+NWL+ N ILADEMGLGK
Sbjct: 169 LLKEEDSDDDESIEFQFRESPAYVNGQ-LRPYQIQGVNWLVSLHKNKIAGILADEMGLGK 227
Query: 63 TIQSLT 68
T+Q+++
Sbjct: 228 TLQTIS 233
Score = 107 (42.7 bits), Expect = 7.3e-42, Sum P(3) = 7.3e-42
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERL 205
I GPFLVIAP ST+ NW RE WT D+N + G +++ + +++L
Sbjct: 244 IPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKL 291
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 326 (119.8 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
Identities = 77/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW IDEAHR
Sbjct: 242 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKSFLGGLNWVFIGIDEAHR 293
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 294 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 353
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 354 R-EFGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 412
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 413 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 440
Score = 188 (71.2 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 46 WFNGRNCI-LADEM--GLGKTIQSLTR--NCILADEMGLGKTIQSLTFVDAVF-KTGIRG 99
+ GR+C+ L D GL S + +CILADEMGLGKTIQ+++F++ +F + + G
Sbjct: 147 YIGGRDCLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHELYG 206
Query: 100 PFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
PFL++ PLST+ +WQRE + W +N +VY
Sbjct: 207 PFLLVVPLSTLTSWQREIQTWAPQMNAVVY 236
Score = 158 (60.7 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 16 WVKLEKSPVY---KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y ++ LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 138 FVALKKQPFYIGGRDCLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 193
Score = 107 (42.7 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--------RRKKLSR 199
F++ +F + + GPFL++ PLST+ +WQRE + W +N +VY G R +
Sbjct: 194 FLNYLFHEHELYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMH 253
Query: 200 RDKERLRLKYVAADY--VPKDGEVLYG-NW 226
+RL+ + Y + KD L G NW
Sbjct: 254 PQTKRLKFNILLTTYEILLKDKSFLGGLNW 283
Score = 40 (19.1 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 928 DWGKEDDSNLLIGIYEYGYGSWE 950
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 301 (111.0 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 67/208 (32%), Positives = 109/208 (52%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR+M+++YE F K K + ++TT+EI++ D L +W ++DEAHR
Sbjct: 491 SRDMIRQYEWFVGGTKKM--------KINAILTTYEILLKDKAFLSSIDWAALLVDEAHR 542
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN +GTPLQN++ EL++LL+F+ P++F E F + +
Sbjct: 543 LKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEKFDCWEEFETAHNE- 601
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
++ +DVEKS+ PK E ++ V++T QK++Y+ IL +N+ L
Sbjct: 602 SNHKGISALHKKLEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYREL 661
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYL 505
SKG ++ +N +MEL+KCC H L
Sbjct: 662 SKGV-KGSINGFVNLVMELKKCCNHASL 688
Score = 167 (63.8 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQS++ + ++F + + GP+LV+ PLST+ WQ+EF W ++N++VY
Sbjct: 427 ILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVY 485
Score = 157 (60.3 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 3 LIKKPK--KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGL 60
L K+PK K D++K + +K LR YQLEGLNW++++W G + ILADEMGL
Sbjct: 379 LRKRPKFEKFESMPDFLKTDGESTHK----LRDYQLEGLNWMVYAWCKGNSSILADEMGL 434
Query: 61 GKTIQSLT 68
GKTIQS++
Sbjct: 435 GKTIQSIS 442
Score = 104 (41.7 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
+ GP+LV+ PLST+ WQ+EF W ++N++VY G
Sbjct: 453 LAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMG 487
Score = 44 (20.5 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+WSR + + G+ +G+G W+
Sbjct: 1155 DWSRPDDSALLLGVWKYGYGSWE 1177
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 309 (113.8 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 70/189 (37%), Positives = 104/189 (55%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
F V IT++E+I+ + LK F W IIDEAHR+KN +GTP
Sbjct: 286 FDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTP 345
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF---GQLKTESEVNXXXXXXXXXXXXXXXED 441
LQNN++EL++LLNFL P F ++EAF F GQ +++ V D
Sbjct: 346 LQNNIHELWALLNFLLPDVFGDSEAFDQWFSGEGQ-DSDTVVQQLHRVLRPFLLRRVKAD 404
Query: 442 VEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLS--KGTTSANVPNLMNTMMELRKC 499
VEKS+ PK+E + +++T +Q+ +Y+ ILE++ ++ G + L+N +M+LRKC
Sbjct: 405 VEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDIDAVNGANGKRESKT-RLLNIVMQLRKC 463
Query: 500 CIHPYLLNG 508
C HPYL G
Sbjct: 464 CNHPYLFEG 472
Score = 161 (61.7 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
ILADEMGLGKT+Q+++F+ + GI GP LVI P ST+ NW+REF WT ++NV+V
Sbjct: 208 ILADEMGLGKTLQTISFLGYLRHIMGITGPHLVIVPKSTLDNWKREFGKWTPEVNVLV 265
Score = 125 (49.1 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
K +K +++ V +SP + T+R YQ+ GLNWL+ NG + ILADEMGLGKT+Q
Sbjct: 163 KDEKHGGSAETV-FRESPAFIQ-GTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQ 220
Query: 66 SLTRNCILADEMGL 79
+++ L MG+
Sbjct: 221 TISFLGYLRHIMGI 234
Score = 119 (46.9 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERL 205
GI GP LVI P ST+ NW+REF WT ++NV+V G +++ + ERL
Sbjct: 233 GITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIAERL 281
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 301 (111.0 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 75/218 (34%), Positives = 115/218 (52%)
Query: 310 RNDKNQ---FIKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
+ DK Q IK++ LY KF VLIT+FE+I+ + L+ F W ++DEAHR+KN +
Sbjct: 220 QGDKEQRASIIKDQ-LYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSS 278
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG--------- 415
+GTPLQNN++EL++LLNFL P F +++ F F
Sbjct: 279 LSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDE 338
Query: 416 ---QLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILER 472
Q + + V+ DVEKS+ PK ET V + +T++Q ++Y+ +LE+
Sbjct: 339 EEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEK 398
Query: 473 NFSFLSK--GTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+ ++ G L+N +M+LRKCC HPYL +G
Sbjct: 399 DIDAVNGVVGKREGKT-RLLNIVMQLRKCCNHPYLFDG 435
Score = 167 (63.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
ILADEMGLGKT+Q+++F+ + + I GPF+VI P ST+ NW+REF WT D+NV+V
Sbjct: 161 ILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVV 218
Score = 132 (51.5 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 19 LEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ +SP Y + LR YQ++GLNWL+ + N + ILADEMGLGKT+Q+++
Sbjct: 127 MTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTIS 176
Score = 120 (47.3 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERL 205
I GPF+VI P ST+ NW+REF WT D+NV+V G +++ + K++L
Sbjct: 187 IDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQL 234
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 301 (111.0 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 75/218 (34%), Positives = 115/218 (52%)
Query: 310 RNDKNQ---FIKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
+ DK Q IK++ LY KF VLIT+FE+I+ + L+ F W ++DEAHR+KN +
Sbjct: 220 QGDKEQRASIIKDQ-LYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSS 278
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG--------- 415
+GTPLQNN++EL++LLNFL P F +++ F F
Sbjct: 279 LSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDE 338
Query: 416 ---QLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILER 472
Q + + V+ DVEKS+ PK ET V + +T++Q ++Y+ +LE+
Sbjct: 339 EEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEK 398
Query: 473 NFSFLSK--GTTSANVPNLMNTMMELRKCCIHPYLLNG 508
+ ++ G L+N +M+LRKCC HPYL +G
Sbjct: 399 DIDAVNGVVGKREGKT-RLLNIVMQLRKCCNHPYLFDG 435
Score = 167 (63.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 72 ILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
ILADEMGLGKT+Q+++F+ + + I GPF+VI P ST+ NW+REF WT D+NV+V
Sbjct: 161 ILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVV 218
Score = 132 (51.5 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 19 LEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ +SP Y + LR YQ++GLNWL+ + N + ILADEMGLGKT+Q+++
Sbjct: 127 MTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTIS 176
Score = 120 (47.3 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERL 205
I GPF+VI P ST+ NW+REF WT D+NV+V G +++ + K++L
Sbjct: 187 IDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQL 234
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 306 (112.8 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 70/216 (32%), Positives = 111/216 (51%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR ++Q+YE F + K KF+ ++TT+EI++ D L W ++DEAHR
Sbjct: 614 SRELIQQYEWQFESSKR--------LKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHR 665
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL++LL+F+ P +F E F + G
Sbjct: 666 LKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGNA 725
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ + +DVEKS+ K E ++ VE+T++QK+YY+ IL +NF L
Sbjct: 726 EDKGYTRLHQQLEPYILRRVK-KDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDAL 784
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLLNGKTYLL 513
KG + +N ++EL+KCC H L+ + L
Sbjct: 785 RKGKRGST-STFLNIVIELKKCCNHAALIRPSEFEL 819
Score = 176 (67.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQ++ F+ ++FK + GPFL + PLST+ WQREF+ W D+NV+ Y
Sbjct: 550 ILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTY 608
Score = 140 (54.3 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 18 KLEKSPVYKNDN-TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++ P + + TLR YQ++GLNWL+ SW + ILADEMGLGKTIQ++
Sbjct: 514 RIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTI 564
Score = 115 (45.5 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 139 GSKFFRICLEFFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
G IC F+ ++FK + GPFL + PLST+ WQREF+ W D+NV+ Y G
Sbjct: 558 GKTIQTIC---FLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLG 610
Score = 40 (19.1 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 225 NWSRSECFKVERGLLTFGWGRWKE 248
+W E K+ G+ +G G W++
Sbjct: 1323 DWGIEEDTKLLCGIYQYGIGSWEQ 1346
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 307 (113.1 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 75/206 (36%), Positives = 112/206 (54%)
Query: 312 DKNQFIKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXX 369
++ + IK+ L KF V ITT+E+ I + K F+WR IIDEAHR+KN N
Sbjct: 361 EEREDIKKNQLIFKKFDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGV 420
Query: 370 XXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLK-TESE---VNX 425
+GTPLQNN++EL+SLLNFL P FS+++ F F TE++ ++
Sbjct: 421 RMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFDLANNTENQQEVIDK 480
Query: 426 XXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL---SKGTT 482
+VEKS+ PK+E + V L+ +QK++Y+ +L ++ + +KG T
Sbjct: 481 LHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSKDLDAVVVGAKGNT 540
Query: 483 SANVPNLMNTMMELRKCCIHPYLLNG 508
L+N M+LRK C HPYL +G
Sbjct: 541 GR--VRLLNICMQLRKACNHPYLFDG 564
Score = 159 (61.0 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 59 GLGKTIQSLTR--NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQR 115
GL IQ R N ILADEMGLGKT+Q+++ + + + GIRGP L+IAP ST+ W +
Sbjct: 283 GLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGIRGPHLIIAPKSTLSGWAK 342
Query: 116 EFEAWTD-LNVIVYHAT 131
EF W L V+ +H +
Sbjct: 343 EFTRWCPFLRVVRFHGS 359
Score = 134 (52.2 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 22 SPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
SP Y T+R YQ+ GLNWL+ + G N ILADEMGLGKT+Q+++ L++ G+
Sbjct: 267 SPPYIKSGTMRDYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGI 324
Score = 110 (43.8 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
GIRGP L+IAP ST+ W +EF W L V+ +HG +++ K +L K
Sbjct: 323 GIRGPHLIIAPKSTLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFK 374
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/92 (25%), Positives = 38/92 (41%)
Query: 166 IAPLSTIPNWQREFEAWTDLNVI---VYHGRRKKLSRRDKERLRLK---YVAADY--VPK 217
IAP + +R F + Y R +L ++ E K Y D +P+
Sbjct: 844 IAPAKPVVKRERRFNKPKQTPIYDFQFYPPRLTQLYEKENEAYNKKVEWYDQKDKGELPE 903
Query: 218 DGEVL-YGNWSRSECFKVERGLLTFGWGRWKE 248
+ E +G+ S+ E ER + T G+G W +
Sbjct: 904 EEEEPDFGDLSKEEQDLKERLIKTGGFGDWSK 935
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 328 (120.5 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 567 SRNMIRTHEWTHHQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 618
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 619 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 678
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 679 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 737
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 738 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 765
Score = 180 (68.4 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 501 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 560
Query: 128 Y 128
Y
Sbjct: 561 Y 561
Score = 157 (60.3 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 463 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 518
Score = 112 (44.5 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--------RRKKLSR 199
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G R + +
Sbjct: 519 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTH 578
Query: 200 RDKERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 579 HQTKRLKFNILLTTYEILLKDKAFLGGLNWA 609
Score = 40 (19.1 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1252 DWGKEDDSNLLIGIYEYGYGSWE 1274
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 328 (120.5 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 566 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 617
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 618 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 677
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 678 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 736
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 737 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 764
Score = 180 (68.4 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 500 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 559
Query: 128 Y 128
Y
Sbjct: 560 Y 560
Score = 157 (60.3 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 462 FVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 517
Score = 108 (43.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 518 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 577
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 578 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 608
Score = 40 (19.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1251 DWGKEDDSNLLIGIYEYGYGSWE 1273
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 328 (120.5 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 565 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 616
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 617 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 676
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 677 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 735
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 736 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 763
Score = 180 (68.4 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 499 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 558
Query: 128 Y 128
Y
Sbjct: 559 Y 559
Score = 157 (60.3 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 461 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 516
Score = 108 (43.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 517 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 576
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 577 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 607
Score = 40 (19.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1250 DWGKEDDSNLLIGIYEYGYGSWE 1272
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 328 (120.5 bits), Expect = 6.1e-41, Sum P(2) = 6.1e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 549 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 600
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 601 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 660
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 661 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 719
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 720 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 747
Score = 180 (68.4 bits), Expect = 6.1e-41, Sum P(2) = 6.1e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 483 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 542
Query: 128 Y 128
Y
Sbjct: 543 Y 543
Score = 157 (60.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 445 FVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 500
Score = 108 (43.1 bits), Expect = 8.0e-13, Sum P(3) = 8.0e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 501 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 560
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 561 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 591
Score = 40 (19.1 bits), Expect = 8.0e-13, Sum P(3) = 8.0e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1234 DWGKEDDSNLLIGIYEYGYGSWE 1256
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 328 (120.5 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 561 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 612
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 613 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 672
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 673 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 731
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 732 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 759
Score = 180 (68.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 495 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 554
Query: 128 Y 128
Y
Sbjct: 555 Y 555
Score = 157 (60.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 457 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 512
Score = 108 (43.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 513 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 572
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 573 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 603
Score = 40 (19.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1246 DWGKEDDSNLLIGIYEYGYGSWE 1268
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 328 (120.5 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 561 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 612
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 613 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 672
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 673 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 731
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 732 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 759
Score = 180 (68.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 495 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 554
Query: 128 Y 128
Y
Sbjct: 555 Y 555
Score = 157 (60.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 457 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 512
Score = 108 (43.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 513 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 572
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 573 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 603
Score = 40 (19.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1246 DWGKEDDSNLLIGIYEYGYGSWE 1268
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 328 (120.5 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 562 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 613
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 614 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 673
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 674 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 732
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 733 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 760
Score = 180 (68.4 bits), Expect = 6.2e-41, Sum P(2) = 6.2e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 496 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 555
Query: 128 Y 128
Y
Sbjct: 556 Y 556
Score = 157 (60.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 458 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 513
Score = 108 (43.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 514 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 573
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 574 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 604
Score = 40 (19.1 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1247 DWGKEDDSNLLIGIYEYGYGSWE 1269
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 328 (120.5 bits), Expect = 6.3e-41, Sum P(2) = 6.3e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 579 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHR 630
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 631 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 690
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 691 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 749
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 750 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 777
Score = 180 (68.4 bits), Expect = 6.3e-41, Sum P(2) = 6.3e-41
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W + +N +V
Sbjct: 513 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV 572
Query: 128 Y 128
Y
Sbjct: 573 Y 573
Score = 157 (60.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 475 FVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 530
Score = 108 (43.1 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG--RRKKLSRRDK--- 202
F++ +F + + GPFL++ PLST+ +WQRE + W + +N +VY G + + R +
Sbjct: 531 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMH 590
Query: 203 ---ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 591 PQTKRLKFNILLTTYEILLKDKAFLGGLNWA 621
Score = 40 (19.1 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1262 DWGKEDDSNLLIGIYEYGYGSWE 1284
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 327 (120.2 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 76/209 (36%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 563 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHR 614
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+F+ P++FS+ E F E G+
Sbjct: 615 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 674
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 675 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 733
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 734 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 761
Score = 179 (68.1 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 32/61 (52%), Positives = 48/61 (78%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W +N +V
Sbjct: 497 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVV 556
Query: 128 Y 128
Y
Sbjct: 557 Y 557
Score = 157 (60.3 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GLNWL SW G +CILADEMGLGKTIQ+++
Sbjct: 459 FVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS 514
Score = 108 (43.1 bits), Expect = 7.1e-13, Sum P(3) = 7.1e-13
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--------RRKKLSR 199
F++ +F + + GPFL++ PLST+ +WQRE + W +N +VY G R +
Sbjct: 515 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMH 574
Query: 200 RDKERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 575 PQTKRLKFNILLTTYEILLKDKSFLGGLNWA 605
Score = 40 (19.1 bits), Expect = 7.1e-13, Sum P(3) = 7.1e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1248 DWGKEDDSNLLVGIYEYGYGSWE 1270
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 303 (111.7 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 68/190 (35%), Positives = 102/190 (53%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGT 383
+F VLIT++E++I + LK W+ +IDEAHR+KN +GT
Sbjct: 283 RFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGT 342
Query: 384 PLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESE----VNXXXXXXXXXXXXXXX 439
PLQNN++EL++LLNFL P F ++E F F Q +E + +
Sbjct: 343 PLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVK 402
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSAN-VPNLMNTMMELRK 498
DVEKS+ PK ET V V +T++Q ++Y+ +LE++ ++ L+N +M+LRK
Sbjct: 403 ADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRK 462
Query: 499 CCIHPYLLNG 508
CC HPYL G
Sbjct: 463 CCNHPYLFEG 472
Score = 170 (64.9 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 72 ILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYH 129
ILADEMGLGKT+Q+++F+ + + I GPFL+I P ST+ NW+REF WT ++NV+V H
Sbjct: 206 ILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLH 265
Score = 121 (47.7 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 19 LEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ +SP + LR YQ++GLNWL+ N + ILADEMGLGKT+Q+++
Sbjct: 172 VSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTIS 221
Score = 117 (46.2 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GPFL+I P ST+ NW+REF WT ++NV+V HG
Sbjct: 232 IEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHG 266
Score = 41 (19.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 462 QKKYYRGILERNFSFLSKG--TTSANVPNLMNTMMELRK 498
+KK R R + LS+ T ++ VPNL TM+ +K
Sbjct: 1066 KKKRSRTSATREDTPLSQNESTRASTVPNLPTTMVTNQK 1104
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 306 (112.8 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 68/202 (33%), Positives = 110/202 (54%)
Query: 310 RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXX 368
++++ FI++ + ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 227 KDERAAFIRDVMMPGEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEI 286
Query: 369 XXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ--LKTESEVNXX 426
+GTPLQNN++EL+SLLNFL P F++ F S F L + V
Sbjct: 287 AREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDTNCLGDQKLVERL 346
Query: 427 XXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANV 486
+VEKS+ PK+E + + L+ +Q+++Y IL ++ L+ +
Sbjct: 347 HAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKM 406
Query: 487 PNLMNTMMELRKCCIHPYLLNG 508
L+N +M+LRKCC HPYL +G
Sbjct: 407 -RLLNILMQLRKCCNHPYLFDG 427
Score = 153 (58.9 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E+SP Y + TLR YQ+ GLNW++ + NG N ILADEMGLGKT+Q++
Sbjct: 129 VRFEESPSYIKNGTLRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTI 179
Score = 128 (50.1 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 163 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRW 214
Score = 75 (31.5 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 191 IPGPHMVLVPKSTLHNWMNEFKRW 214
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 823 LTQGFTNWNKRDFNQFIKANEKY 845
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 314 (115.6 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 71/203 (34%), Positives = 110/203 (54%)
Query: 310 RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXX 368
R ++ FI++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 247 REERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEI 306
Query: 369 XXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVNX 425
+GTPLQNN++EL++LLNFL P F+++E F + F L V
Sbjct: 307 VREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVER 366
Query: 426 XXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSAN 485
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 367 LHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSAGKMDK 426
Query: 486 VPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 427 M-RLLNVLMQLRKCCNHPYLFDG 448
Score = 139 (54.0 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ + SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 150 RFDDSPSYVKTGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 200
Score = 128 (50.1 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 183 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRW 234
Score = 78 (32.5 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
I GP +V+ P ST+ NW EF+ W L + G R++
Sbjct: 211 IPGPHMVLVPKSTLYNWMNEFKRWVPSLKAVCLIGDREE 249
Score = 41 (19.5 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 300 NML-QEYELFFRNDKNQFIKEKD 321
N+L Q + ++ + D NQFIK +
Sbjct: 818 NLLSQGFTIWTKRDFNQFIKANE 840
Score = 39 (18.8 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 107 LSTIPNWQREFEAWTDLNVIVYHATFVVLLQT 138
L + N +F+AW D N + V L T
Sbjct: 338 LPDVFNSSEDFDAWFDTNNCLGDTKLVERLHT 369
Score = 38 (18.4 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 169 LSTIPNWQREFEAWTDLN 186
L + N +F+AW D N
Sbjct: 338 LPDVFNSSEDFDAWFDTN 355
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 300 (110.7 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 266 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 325
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 326 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 385
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAG 445
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 446 KMDKM-RLLNILMQLRKCCNHPYLFDG 471
Score = 145 (56.1 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 222
Score = 133 (51.9 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 206 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 265
Query: 128 Y 128
+
Sbjct: 266 F 266
Score = 83 (34.3 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 234 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 268
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 313 (115.2 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 73/204 (35%), Positives = 112/204 (54%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK+Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 248 DKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 307
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL++LLNFL P F+++E F S F L + V
Sbjct: 308 IVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVE 367
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 368 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKLD 427
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 428 KM-RLLNILMQLRKCCNHPYLFDG 450
Score = 141 (54.7 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E+SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 152 RFEESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 202
Score = 129 (50.5 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 185 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRW 236
Score = 75 (31.5 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 213 IPGPHMVLVPKSTLHNWMNEFKRW 236
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 313 (115.2 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
Identities = 72/200 (36%), Positives = 108/200 (54%)
Query: 313 KNQFIKEKDL-YKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXX 371
+NQ +++ L KF V TT+E+++ +LK NWR IIDEAHR+KN K
Sbjct: 219 RNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRE 278
Query: 372 XXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ--LKTESE-VNXXXX 428
+GTPLQNN++EL++LLNFL P F++++ F S F + ++ V
Sbjct: 279 LNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTDLVQRLHK 338
Query: 429 XXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPN 488
DVEKS+ PK+E V V L+ +Q+++Y +L ++ ++ G
Sbjct: 339 VLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDIDIIN-GAGKVEKAR 397
Query: 489 LMNTMMELRKCCIHPYLLNG 508
LMN +M LRKC HPYL +G
Sbjct: 398 LMNILMHLRKCVNHPYLFDG 417
Score = 137 (53.3 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 13 ASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ D V +KSP Y + +R YQ+ GLNWL N N ILADEMGLGKT+Q+++
Sbjct: 114 SDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTIS 169
Score = 130 (50.8 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV--FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVI 126
N ILADEMGLGKT+Q+++ + + +K P LVI P ST+ NW EF+ W +N +
Sbjct: 152 NGILADEMGLGKTLQTISMIGYMKHYKNKA-SPHLVIVPKSTLQNWANEFKKWCPSINAV 210
Query: 127 V 127
V
Sbjct: 211 V 211
Score = 78 (32.5 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 162 PFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
P LVI P ST+ NW EF+ W +N +V G
Sbjct: 183 PHLVIVPKSTLQNWANEFKKWCPSINAVVLIG 214
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 303 (111.7 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 71/207 (34%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 266 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 325
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ E F S F L +
Sbjct: 326 LSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTKNCLGDQK 385
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 386 LVERLHTVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAG 445
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 446 KMDKM-RLLNILMQLRKCCNHPYLFDG 471
Score = 145 (56.1 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 222
Score = 133 (51.9 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 206 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 265
Query: 128 Y 128
+
Sbjct: 266 F 266
Score = 83 (34.3 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 234 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 268
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 861 LTQGFTNWTKRDFNQFIKANEKY 883
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 300 (110.7 bits), Expect = 7.6e-39, Sum P(3) = 7.6e-39
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKN---QFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 267 FVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 326
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 327 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 386
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 387 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG 446
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 447 KMDKM-RLLNILMQLRKCCNHPYLFDG 472
Score = 145 (56.1 bits), Expect = 7.6e-39, Sum P(3) = 7.6e-39
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 173 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 223
Score = 133 (51.9 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 207 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 266
Query: 128 Y 128
+
Sbjct: 267 F 267
Score = 84 (34.6 bits), Expect = 7.6e-39, Sum P(3) = 7.6e-39
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPK 217
I GP +V+ P ST+ NW EF+ W L VI + G DK+ +R ++ + +P
Sbjct: 235 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG--------DKD-VRAAFIRDEMMPG 285
Query: 218 DGEV 221
+ +V
Sbjct: 286 EWDV 289
Score = 39 (18.8 bits), Expect = 9.1e-10, Sum P(3) = 9.1e-10
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 845 LTQGFTNWTKRDFNQFIKANEKY 867
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 300 (110.7 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 242 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 301
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 302 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 361
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 362 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG 421
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 422 KMDKM-RLLNILMQLRKCCNHPYLFDG 447
Score = 144 (55.7 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 148 IRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 198
Score = 133 (51.9 bits), Expect = 5.7e-33, Sum P(2) = 5.7e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 182 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 241
Query: 128 Y 128
+
Sbjct: 242 F 242
Score = 83 (34.3 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 210 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 244
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 832 LTQGFTNWTKRDFNQFIKANEKY 854
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 300 (110.7 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 266 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 325
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 326 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 385
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAG 445
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 446 KMDKM-RLLNILMQLRKCCNHPYLFDG 471
Score = 145 (56.1 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 222
Score = 133 (51.9 bits), Expect = 6.7e-33, Sum P(2) = 6.7e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 206 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 265
Query: 128 Y 128
+
Sbjct: 266 F 266
Score = 83 (34.3 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 234 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 268
Score = 39 (18.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 856 LTQGFTNWTKRDFNQFIKANEKY 878
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 300 (110.7 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 266 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 325
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 326 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 385
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAG 445
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 446 KMDKM-RLLNILMQLRKCCNHPYLFDG 471
Score = 145 (56.1 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 222
Score = 133 (51.9 bits), Expect = 6.8e-33, Sum P(2) = 6.8e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 206 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 265
Query: 128 Y 128
+
Sbjct: 266 F 266
Score = 83 (34.3 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 234 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 268
Score = 39 (18.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 844 LTQGFTNWTKRDFNQFIKANEKY 866
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 300 (110.7 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 266 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 325
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 326 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 385
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAG 445
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 446 KMDKM-RLLNILMQLRKCCNHPYLFDG 471
Score = 145 (56.1 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 222
Score = 133 (51.9 bits), Expect = 7.0e-33, Sum P(2) = 7.0e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 206 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 265
Query: 128 Y 128
+
Sbjct: 266 F 266
Score = 83 (34.3 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 234 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 268
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 856 LTQGFTNWTKRDFNQFIKANEKY 878
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 300 (110.7 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 266 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 325
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 326 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 385
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 386 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAG 445
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 446 KMDKM-RLLNILMQLRKCCNHPYLFDG 471
Score = 145 (56.1 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 172 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 222
Score = 133 (51.9 bits), Expect = 7.0e-33, Sum P(2) = 7.0e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 206 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 265
Query: 128 Y 128
+
Sbjct: 266 F 266
Score = 83 (34.3 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 234 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 268
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 856 LTQGFTNWTKRDFNQFIKANEKY 878
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 300 (110.7 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKN---QFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 243 FVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 302
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 303 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 362
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 363 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG 422
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 423 KMDKM-RLLNILMQLRKCCNHPYLFDG 448
Score = 145 (56.1 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 149 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 199
Score = 129 (50.5 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + GP +V+ P ST+ NW EF+ W L VI
Sbjct: 183 NGILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 242
Query: 128 Y 128
+
Sbjct: 243 F 243
Score = 82 (33.9 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDG 219
GP +V+ P ST+ NW EF+ W L VI + G DK+ +R ++ + +P +
Sbjct: 213 GPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG--------DKD-VRAAFIRDEMMPGEW 263
Query: 220 EV 221
+V
Sbjct: 264 DV 265
Score = 41 (19.5 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 293 KSASASRNMLQEYELFFRNDKNQFIKEKDLY 323
+S + + Q + + + D NQFIK + Y
Sbjct: 825 ESEEKDKLLTQGFTNWTKRDFNQFIKANEKY 855
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 300 (110.7 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 263 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 322
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 323 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 382
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E + + L+ +Q+++Y IL ++ L+
Sbjct: 383 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG 442
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 443 KMDKM-RLLNILMQLRKCCNHPYLFDG 468
Score = 144 (55.7 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 169 IRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 219
Score = 133 (51.9 bits), Expect = 6.6e-33, Sum P(2) = 6.6e-33
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 203 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVIC 262
Query: 128 Y 128
+
Sbjct: 263 F 263
Score = 83 (34.3 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 231 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG 265
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 853 LTQGFTNWTKRDFNQFIKANEKY 875
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 300 (110.7 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 65/188 (34%), Positives = 102/188 (54%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGT 383
++ V +T++E++I + K FNWR +IDEAHR+KN K +GT
Sbjct: 206 EWDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 265
Query: 384 PLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVNXXXXXXXXXXXXXXXE 440
PLQNN++EL++LLNFL P F++ + F S F L + V
Sbjct: 266 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKA 325
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCC 500
+VEKS+ PK+E + + L+ +Q+++Y IL ++ L+ + L+N +M+LRKCC
Sbjct: 326 EVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKM-RLLNILMQLRKCC 384
Query: 501 IHPYLLNG 508
HPYL +G
Sbjct: 385 NHPYLFDG 392
Score = 150 (57.9 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++ E+SP Y TLR YQ+ GLNW++ + NG N ILADEMGLGKT+Q++
Sbjct: 93 IRFEESPSYVKGGTLRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTI 143
Score = 128 (50.1 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 127 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRW 178
Score = 75 (31.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 155 IPGPHMVLVPKSTLHNWMNEFKRW 178
Score = 38 (18.4 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 765 LTQGFTNWNKRDFNQFIKANEKY 787
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 310 (114.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 262 DKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 321
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL+SLLNFL P F++ + F S F L + V
Sbjct: 322 IVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVE 381
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 382 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 441
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 442 KM-RLLNILMQLRKCCNHPYLFDG 464
Score = 139 (54.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 166 RFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 216
Score = 128 (50.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 199 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKW 250
Score = 74 (31.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 227 IPGPHMVLVPKSTLHNWMSEFKKW 250
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 310 (114.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 262 DKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 321
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL+SLLNFL P F++ + F S F L + V
Sbjct: 322 IVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVE 381
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 382 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 441
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 442 KM-RLLNILMQLRKCCNHPYLFDG 464
Score = 139 (54.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 166 RFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 216
Score = 128 (50.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 199 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW 250
Score = 74 (31.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 227 IPGPHMVLVPKSTLHNWMSEFKRW 250
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 310 (114.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 263 DKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 322
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL+SLLNFL P F++ + F S F L + V
Sbjct: 323 IVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVE 382
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 383 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 442
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 443 KM-RLLNILMQLRKCCNHPYLFDG 465
Score = 139 (54.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 167 RFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 217
Score = 128 (50.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 200 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW 251
Score = 74 (31.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 228 IPGPHMVLVPKSTLHNWMSEFKRW 251
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 310 (114.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 263 DKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 322
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL+SLLNFL P F++ + F S F L + V
Sbjct: 323 IVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVE 382
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 383 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 442
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 443 KM-RLLNILMQLRKCCNHPYLFDG 465
Score = 139 (54.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 167 RFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 217
Score = 128 (50.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 200 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW 251
Score = 74 (31.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 228 IPGPHMVLVPKSTLHNWMSEFKRW 251
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 310 (114.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 263 DKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 322
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL+SLLNFL P F++ + F S F L + V
Sbjct: 323 IVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVE 382
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 383 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 442
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 443 KM-RLLNILMQLRKCCNHPYLFDG 465
Score = 139 (54.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 167 RFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 217
Score = 128 (50.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 200 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW 251
Score = 74 (31.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 228 IPGPHMVLVPKSTLHNWMSEFKRW 251
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 310 (114.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 312 DKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
DK Q F+++ L ++ V +T++E++I + K FNWR +IDEAHR+KN K
Sbjct: 263 DKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSE 322
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVN 424
+GTPLQNN++EL+SLLNFL P F++ + F S F L + V
Sbjct: 323 IVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVE 382
Query: 425 XXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
DVEKS+ PK+E + V L+ +Q+++Y IL ++ L+
Sbjct: 383 RLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMD 442
Query: 485 NVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 443 KM-RLLNILMQLRKCCNHPYLFDG 465
Score = 139 (54.0 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q+++
Sbjct: 167 RFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 217
Score = 128 (50.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + I GP +V+ P ST+ NW EF+ W
Sbjct: 200 NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW 251
Score = 74 (31.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAW 182
I GP +V+ P ST+ NW EF+ W
Sbjct: 228 IPGPHMVLVPKSTLHNWMSEFKRW 251
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 304 (112.1 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 73/209 (34%), Positives = 114/209 (54%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SR +++YE N + + IK F+ L+TT+EI++ D L + NW +DEAHR
Sbjct: 575 SRKTIRDYEWI--NPQTKRIK------FNALLTTYEILLKDKGVLGNINWAFLGVDEAHR 626
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + +GTPLQN++ EL+SLL+FL +F + E F E G+
Sbjct: 627 LKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFLMSDKFESWEDFEDEHGKG 686
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ ++ +DVEKS+ K E ++ V+++ QK++Y+ IL RNF L
Sbjct: 687 R-DNGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWILTRNFKAL 745
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKGT ++ +N +MEL+KCC H +L+
Sbjct: 746 SKGTRGSS-SGFLNIVMELKKCCNHAFLI 773
Score = 185 (70.2 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 34/59 (57%), Positives = 48/59 (81%)
Query: 72 ILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQ+++F+ +F + + GPF+V+ PLST+ +WQREF+ W D+NV+VY
Sbjct: 511 ILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVPLSTLTSWQREFDTWAPDMNVVVY 569
Score = 146 (56.5 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 16 WVKLEKSPVYKNDNTL--RAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y D L R YQL+G+NWL SW + ILADEMGLGKTIQ+++
Sbjct: 472 FVPLKKQPSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTIS 526
Score = 123 (48.4 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGR-RKKLSRRDKERL-----RLKYVAA- 212
GPF+V+ PLST+ +WQREF+ W D+NV+VY G + + RD E + R+K+ A
Sbjct: 539 GPFIVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALL 598
Query: 213 ---DYVPKDGEVLYG-NWS 227
+ + KD VL NW+
Sbjct: 599 TTYEILLKDKGVLGNINWA 617
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 292 (107.8 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 71/208 (34%), Positives = 112/208 (53%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 275 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 334
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 335 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 394
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKY-YRGILERNFSFLSKG 480
V DVEKS+ PK+E V + L+ +Q+++ Y IL ++ L+
Sbjct: 395 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKDIDVLNSA 454
Query: 481 TTSANVPNLMNTMMELRKCCIHPYLLNG 508
+ L+N +M+LRKCC HPYL +G
Sbjct: 455 GKMDKM-RLLNILMQLRKCCNHPYLFDG 481
Score = 145 (56.1 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 181 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 231
Score = 132 (51.5 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 215 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVIC 274
Query: 128 Y 128
+
Sbjct: 275 F 275
Score = 82 (33.9 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 243 IPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVG 277
Score = 39 (18.8 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 856 LTQGFTNWTKRDFNQFIKANEKY 878
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 312 (114.9 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 70/213 (32%), Positives = 113/213 (53%)
Query: 296 SASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEA 355
+ SR ++++YE + D Q IK F++L+TT+E ++ D L + W+ IDEA
Sbjct: 459 TTSRQVIRDYEFYV--DGTQKIK------FNLLLTTYEYVLKDRSVLSNIKWQYMAIDEA 510
Query: 356 HRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG 415
HRLKN +GTPLQNN+ EL +L++FL P +F E E
Sbjct: 511 HRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAP 570
Query: 416 QLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFS 475
+ E+ + +DVEKS+ K E ++ VEL+++Q +Y+ IL RN+
Sbjct: 571 DEEQEAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYR 630
Query: 476 FLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
L++ +S + +L+N ++EL+K HPYL +G
Sbjct: 631 VLTQSISSGSQISLLNIVVELKKASNHPYLFDG 663
Score = 156 (60.0 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 40/90 (44%), Positives = 53/90 (58%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIR--GPFLVIAPLSTIPNWQREFEAW-TDLNVI 126
N ILADEMGLGKT+Q++ F+ + + +R GPFLV+ PLST+P WQ W +D+N I
Sbjct: 395 NGILADEMGLGKTVQTVAFLSYLAHS-LRQHGPFLVVVPLSTVPAWQETLALWASDMNCI 453
Query: 127 VYHATFVVLLQTGSKFFRICLEFFVDAVFK 156
Y L T S+ EF+VD K
Sbjct: 454 SY------LGNTTSRQVIRDYEFYVDGTQK 477
Score = 144 (55.7 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
KLE+ P Y LR +QL G+NW+ + W N ILADEMGLGKT+Q++ LA +
Sbjct: 362 KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSL 421
Score = 101 (40.6 bits), Expect = 9.3e-11, Sum P(3) = 9.3e-11
Identities = 28/73 (38%), Positives = 35/73 (47%)
Query: 161 GPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHGRR-KKLSRRDKE---------RLRLKY 209
GPFLV+ PLST+P WQ W +D+N I Y G + RD E + L
Sbjct: 425 GPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLL 484
Query: 210 VAADYVPKDGEVL 222
+YV KD VL
Sbjct: 485 TTYEYVLKDRSVL 497
Score = 37 (18.1 bits), Expect = 9.3e-11, Sum P(3) = 9.3e-11
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 226 WSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
W E + G+ G+G W E + E +
Sbjct: 1123 WGPREDSMLLSGICKHGFGAWLEIRDDPELK 1153
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 289 (106.8 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 65/212 (30%), Positives = 109/212 (51%)
Query: 296 SASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEA 355
S +R+++ E+E +F + KF VL+TT+E++ L W IIDE
Sbjct: 307 SEARDVIWEHEFYFSEGRKS--------KFDVLLTTYEMVHPGISVLSPIKWTCMIIDEG 358
Query: 356 HRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG 415
HRLKN+ K +GTPLQNN+NELF+L++FL+ +F + E F
Sbjct: 359 HRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQD--- 415
Query: 416 QLKTESEVNXXXXXXXXXXXXXXXEDVEKS-IAPKEETVVEVELTNIQKKYYRGILERNF 474
+ E +++ +DV K + PK+E ++ V++++ QK+ Y+ ++ N+
Sbjct: 416 -INKEEQISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNY 474
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLL 506
L+K + + N +M+LR+ C HPYLL
Sbjct: 475 QVLTKKRDA----KISNVLMKLRQVCSHPYLL 502
Score = 181 (68.8 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQS+ F+ ++F+ + P LV+APLSTI NW+REF W +NV++Y
Sbjct: 245 NVILADEMGLGKTIQSIAFLASLFEENL-SPHLVVAPLSTIRNWEREFATWAPHMNVVMY 303
Score = 138 (53.6 bits), Expect = 6.7e-32, Sum P(2) = 6.7e-32
Identities = 29/47 (61%), Positives = 33/47 (70%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADE 76
TL YQLEGLN+L +SW N ILADEMGLGKTIQS+ L +E
Sbjct: 224 TLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEE 270
Score = 111 (44.1 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
F+ ++F+ + P LV+APLSTI NW+REF W +NV++Y G
Sbjct: 263 FLASLFEENL-SPHLVVAPLSTIRNWEREFATWAPHMNVVMYTG 305
>UNIPROTKB|I3LB58 [details] [associations]
symbol:I3LB58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 Pfam:PF00176 PROSITE:PS50013
SMART:SM00298 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 InterPro:IPR014001 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000027570 OMA:REWIFEG Uniprot:I3LB58
Length = 226
Score = 255 (94.8 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 146 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 205
Query: 129 HAT 131
H +
Sbjct: 206 HGS 208
Score = 239 (89.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 107 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 164
Score = 174 (66.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 165 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 222
Score = 45 (20.9 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 298 SRNMLQEYELFFRN 311
SR M+Q+YE+ +R+
Sbjct: 211 SRQMIQQYEMVYRD 224
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 292 (107.8 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 63/188 (33%), Positives = 99/188 (52%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGT 383
+FHVL+TT+E+ + D LK + W++ ++DEAHRLKN+ +GT
Sbjct: 134 RFHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGT 193
Query: 384 PLQNNVNELFSLLNFLEPQQFSNN--EAFMSEFGQLKTESE-VNXXXXXXXXXXXXXXXE 440
P+QNN+ E++SLL F++P F E F++ + ++TE V+
Sbjct: 194 PIQNNLQEVYSLLTFIQPSVFLPEAVEDFVNAYADIQTEPALVDELHQVLQPFLLRRVKA 253
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCC 500
+V + K E VV L+ +QK+YY+ IL R+ T + L+N +M+LRKC
Sbjct: 254 EVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFR--TDQSTKTRLLNVLMQLRKCV 311
Query: 501 IHPYLLNG 508
HPYL +G
Sbjct: 312 DHPYLFDG 319
Score = 134 (52.2 bits), Expect = 4.7e-32, Sum P(2) = 4.7e-32
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 69 RNCILADEMGLGKTIQSLTFVD-AVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVI 126
+ CIL DEMGLGKT Q+++ + A + GPFLV+ PL+ + NW++E E + L+VI
Sbjct: 54 QGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVI 113
Query: 127 VY 128
Y
Sbjct: 114 CY 115
Score = 114 (45.2 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
LR YQL+G+ WL N + CIL DEMGLGKT Q+++
Sbjct: 35 LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTIS 72
Score = 91 (37.1 bits), Expect = 2.5e-35, Sum P(3) = 2.5e-35
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
+ GPFLV+ PL+ + NW++E E + L+VI Y G ++K
Sbjct: 83 MNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEK 121
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 285 (105.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 65/203 (32%), Positives = 107/203 (52%)
Query: 310 RNDKNQFIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXX 368
++ +N FI++ + ++ V +T++E+ I + K FNWR +IDEAHR+KN K
Sbjct: 212 QDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEI 271
Query: 369 XXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVNX 425
+GTPLQNN++EL++LLNFL P F+++E F F L ++ +
Sbjct: 272 LREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITR 331
Query: 426 XXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSAN 485
+VEK + PK+E + V L+ +Q+ +Y +L ++ ++ G
Sbjct: 332 LHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVN-GAGKVE 390
Query: 486 VPNLMNTMMELRKCCIHPYLLNG 508
L N +M+LRKC HPYL +G
Sbjct: 391 KMRLQNILMQLRKCTNHPYLFDG 413
Score = 138 (53.6 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ + SP Y +R YQ+ GLNW++ + NG N ILADEMGLGKT+Q+++
Sbjct: 115 RFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIS 165
Score = 129 (50.5 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV--FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKT+Q+++ + + FK GP +VI P ST+ NW EF+ W
Sbjct: 148 NGILADEMGLGKTLQTISLLGYLKHFKNQA-GPHIVIVPKSTLQNWVNEFKKW 199
Score = 74 (31.1 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 161 GPFLVIAPLSTIPNWQREFEAW 182
GP +VI P ST+ NW EF+ W
Sbjct: 178 GPHIVIVPKSTLQNWVNEFKKW 199
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 300 NML-QEYELFFRNDKNQFIKEKDLY 323
N+L Q + + + D NQFIK + Y
Sbjct: 791 NLLSQGFTAWTKRDFNQFIKANEKY 815
Score = 39 (18.8 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 192 GRRKKLSRRDKER 204
GR KK+ +DKE+
Sbjct: 73 GRPKKIKDKDKEK 85
Score = 38 (18.4 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 386 QNNVNELFSLLNFLEPQQFSNNEAFMSE 413
Q N +E+ +++ F Q FS+ E +++
Sbjct: 592 QLNKDEMLNIIRFGANQVFSSKETDITD 619
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 325 (119.5 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 75/215 (34%), Positives = 115/215 (53%)
Query: 302 LQEYELFFRNDKNQFIKEKDLYK-FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKN 360
++ ++ + D+ + + L+ F VL+TT+EI+I D L D +W +IDEAHR+KN
Sbjct: 397 MKAFKYYGNKDQRKELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKN 456
Query: 361 RNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG--QLK 418
+GTPL NN+ EL+SLLNFL P+ F N+E F + F ++
Sbjct: 457 EKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKIS 516
Query: 419 T----ESEVNXXXXXXXXXXXXXXXE-DVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473
T +SE+ + +VE+S+ PK E + V ++ +QKK Y IL +N
Sbjct: 517 TNDNKQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN 576
Query: 474 FSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
L+ T S N ++N +M+LRKCC HPYL +G
Sbjct: 577 IDVLNAMTGSKN--QMLNILMQLRKCCNHPYLFDG 609
Score = 125 (49.1 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCIL 73
K P+ N T++ YQLEGLNWL + N ILADEMGLGKT+Q+++ C L
Sbjct: 313 KQPMNIN-GTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYL 364
Score = 122 (48.0 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
N ILADEMGLGKT+Q+++ + + F I+ ++I P ST+ NW E + W T +
Sbjct: 342 NGILADEMGLGKTLQTISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFK 401
Query: 128 YH 129
Y+
Sbjct: 402 YY 403
Score = 86 (35.3 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 155 FKTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG---RRKKLSRR----DKERLR 206
F I+ ++I P ST+ NW E + W T + Y+G +RK+L+R D + L
Sbjct: 366 FNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFDVLL 425
Query: 207 LKYVAADYVPKDGEVLYG-NW 226
Y + V KD LY +W
Sbjct: 426 TTY---EIVIKDKSALYDIDW 443
Score = 48 (22.0 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 195 KKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNE 254
K ++ D E+++L+ + K G + W+++E K+ GL+ +G E++
Sbjct: 1186 KDIASVDIEKIKLQ---KQELMKQG---FAKWNKAEFNKLMSGLIIYGTNE-VEYIYEKY 1238
Query: 255 FRN 257
F N
Sbjct: 1239 FSN 1241
Score = 45 (20.9 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 386 QNNVNELFSLLNFLEPQQFSNNE 408
+NN EL +LNF P+ + +
Sbjct: 787 ENNKQELHDILNFGAPEVYKTQD 809
Score = 40 (19.1 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 279 KSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQ---F--IKEKDLYKF-HVLITTF 332
K +S +S D L + + S+N + + R N F I+E + H++ T+
Sbjct: 567 KLYSDILSKNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 626
Query: 333 EIIISDCL--ELKDFNWRLCIIDEAHRL 358
++ + D L LK N R+ + + RL
Sbjct: 627 KMSLLDKLLPRLKKENSRVLLFSQMTRL 654
Score = 38 (18.4 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 440 EDVEKSIAPKEETVVEVE--LTNIQ 462
ED++ +A E+ +E+E L N++
Sbjct: 816 EDIDIILADAEKRTIEIEKKLKNLE 840
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 325 (119.5 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 75/215 (34%), Positives = 115/215 (53%)
Query: 302 LQEYELFFRNDKNQFIKEKDLYK-FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKN 360
++ ++ + D+ + + L+ F VL+TT+EI+I D L D +W +IDEAHR+KN
Sbjct: 397 MKAFKYYGNKDQRKELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKN 456
Query: 361 RNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG--QLK 418
+GTPL NN+ EL+SLLNFL P+ F N+E F + F ++
Sbjct: 457 EKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKIS 516
Query: 419 T----ESEVNXXXXXXXXXXXXXXXE-DVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473
T +SE+ + +VE+S+ PK E + V ++ +QKK Y IL +N
Sbjct: 517 TNDNKQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN 576
Query: 474 FSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
L+ T S N ++N +M+LRKCC HPYL +G
Sbjct: 577 IDVLNAMTGSKN--QMLNILMQLRKCCNHPYLFDG 609
Score = 125 (49.1 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCIL 73
K P+ N T++ YQLEGLNWL + N ILADEMGLGKT+Q+++ C L
Sbjct: 313 KQPMNIN-GTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYL 364
Score = 122 (48.0 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIV 127
N ILADEMGLGKT+Q+++ + + F I+ ++I P ST+ NW E + W T +
Sbjct: 342 NGILADEMGLGKTLQTISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFK 401
Query: 128 YH 129
Y+
Sbjct: 402 YY 403
Score = 86 (35.3 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 155 FKTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHG---RRKKLSRR----DKERLR 206
F I+ ++I P ST+ NW E + W T + Y+G +RK+L+R D + L
Sbjct: 366 FNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFDVLL 425
Query: 207 LKYVAADYVPKDGEVLYG-NW 226
Y + V KD LY +W
Sbjct: 426 TTY---EIVIKDKSALYDIDW 443
Score = 48 (22.0 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 195 KKLSRRDKERLRLKYVAADYVPKDGEVLYGNWSRSECFKVERGLLTFGWGRWKEFLANNE 254
K ++ D E+++L+ + K G + W+++E K+ GL+ +G E++
Sbjct: 1186 KDIASVDIEKIKLQ---KQELMKQG---FAKWNKAEFNKLMSGLIIYGTNE-VEYIYEKY 1238
Query: 255 FRN 257
F N
Sbjct: 1239 FSN 1241
Score = 45 (20.9 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 386 QNNVNELFSLLNFLEPQQFSNNE 408
+NN EL +LNF P+ + +
Sbjct: 787 ENNKQELHDILNFGAPEVYKTQD 809
Score = 40 (19.1 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 279 KSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQ---F--IKEKDLYKF-HVLITTF 332
K +S +S D L + + S+N + + R N F I+E + H++ T+
Sbjct: 567 KLYSDILSKNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 626
Query: 333 EIIISDCL--ELKDFNWRLCIIDEAHRL 358
++ + D L LK N R+ + + RL
Sbjct: 627 KMSLLDKLLPRLKKENSRVLLFSQMTRL 654
Score = 38 (18.4 bits), Expect = 5.9e-08, Sum P(5) = 5.9e-08
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 440 EDVEKSIAPKEETVVEVE--LTNIQ 462
ED++ +A E+ +E+E L N++
Sbjct: 816 EDIDIILADAEKRTIEIEKKLKNLE 840
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 274 (101.5 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
Identities = 66/207 (31%), Positives = 104/207 (50%)
Query: 309 FRNDKNQFIK-EKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
+ DK + + ++DL + FHVL+TT+EI + D LK F+W + +DEAHRLKN++
Sbjct: 120 YTGDKEERARRQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSL 179
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNN--EAFMSEFGQLKTESE 422
+GTP+QN++ EL+SLL+ +EP F E F+ + ++ ES+
Sbjct: 180 LHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESK 239
Query: 423 -VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
+ V + K E V+ ++ +QKKYY+ IL ++ T
Sbjct: 240 SASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENET 299
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
A L N + +LRKC HPYL +G
Sbjct: 300 --AKKVKLQNVLTQLRKCVDHPYLFDG 324
Score = 131 (51.2 bits), Expect = 9.2e-30, Sum P(2) = 9.2e-30
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 71 CILADEMGLGKTIQSLTF-VDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
CIL DEMGLGKT Q++ + V + GPFL++ PLS + NW+ E E + L+ + Y
Sbjct: 61 CILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTY 120
Score = 126 (49.4 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 31 LRAYQLEGLNWLMFSWFNGRN-CILADEMGLGKTIQSL 67
LR+YQLEG+NWL+ F+G+N CIL DEMGLGKT Q++
Sbjct: 40 LRSYQLEGVNWLV-QCFHGQNGCILGDEMGLGKTCQTI 76
Score = 94 (38.1 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKE 203
GPFL++ PLS + NW+ E E + L+ + Y G +++ +RR ++
Sbjct: 90 GPFLILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQD 133
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 296 (109.3 bits), Expect = 8.6e-35, Sum P(3) = 8.6e-35
Identities = 65/188 (34%), Positives = 96/188 (51%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHVL+TT+EI + D LK F W + ++DEAHRLKN+N +GTP
Sbjct: 148 FHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTP 207
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEA--FMSEFGQLKTESE-VNXXXXXXXXXXXXXXXED 441
+QN++ EL+SLL+F+EP FS E F+ + ++ ESE + +
Sbjct: 208 IQNSLQELYSLLSFVEPDLFSKEEVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAE 267
Query: 442 VEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTS-ANVPNLMNTMMELRKCC 500
V + K E V+ ++ +QKKYY+ IL ++ A L N + +LRKC
Sbjct: 268 VAAELPKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCV 327
Query: 501 IHPYLLNG 508
HPYL +G
Sbjct: 328 DHPYLFDG 335
Score = 129 (50.5 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 71 CILADEMGLGKTIQSLT-FVDAVFKTGIRGPFLVIAPLSTIPNWQREFE 118
CIL DEMGLGKT Q++ F+ + GPFL++ PLS + NW+ E E
Sbjct: 69 CILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLILCPLSVLSNWKEEME 117
Score = 117 (46.2 bits), Expect = 8.6e-35, Sum P(3) = 8.6e-35
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 31 LRAYQLEGLNWLM--FSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
LR YQLEG+NWL F + NG CIL DEMGLGKT Q++ LA +
Sbjct: 48 LRPYQLEGVNWLAQCFHYQNG--CILGDEMGLGKTCQTIAVFIYLAGRL 94
Score = 75 (31.5 bits), Expect = 8.6e-35, Sum P(3) = 8.6e-35
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKK 196
GPFL++ PLS + NW+ E E L + Y G +++
Sbjct: 98 GPFLILCPLSVLSNWKEEMERCAPGLCCVTYAGDKEE 134
>UNIPROTKB|H7C294 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953 Pfam:PF00176
PROSITE:PS50013 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 HGNC:HGNC:19057
ChiTaRS:CHD6 ProteinModelPortal:H7C294 Ensembl:ENST00000440697
Uniprot:H7C294
Length = 525
Score = 272 (100.8 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 67/154 (43%), Positives = 90/154 (58%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 183 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 242
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFKTGIR-GPFLVIAPLSTIPNWQR-EFEAWTD 184
H + + ++Q +R + VFK + F +I L+ P ++ + W D
Sbjct: 243 HGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMI--LADCPELKKIHWGRWKD 300
Query: 185 LNVIVYHGRRK-KLSRRDKE---RLRLKYVAADY 214
I+ HGR K L+ +D E R L Y Y
Sbjct: 301 ---ILTHGRFKWHLNEKDMEMICRALLVYCVKHY 331
Score = 239 (89.2 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 144 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 201
Score = 204 (76.9 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 45/122 (36%), Positives = 70/122 (57%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 202 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 259
Query: 210 VAADYVPKDG----EVLYGNWSR--SECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEY 263
A P G V+ + ++C ++++ WGRWK+ L + F+ E+
Sbjct: 260 RDAQGNPLSGVFKFHVVITTFEMILADCPELKK----IHWGRWKDILTHGRFKWHLNEKD 315
Query: 264 VE 265
+E
Sbjct: 316 ME 317
Score = 128 (50.1 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNW 347
SR M+Q+YE+ +R+ + + ++KFHV+ITTFE+I++DC ELK +W
Sbjct: 248 SRQMIQQYEMVYRDAQGNPLS--GVFKFHVVITTFEMILADCPELKKIHW 295
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 275 (101.9 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 67/207 (32%), Positives = 103/207 (49%)
Query: 309 FRNDKNQFIK-EKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
+ DK + + ++DL + FHVL+TT+EI + D LK F+W + +DEAHRLKN++
Sbjct: 120 YTGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSL 179
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNN--EAFMSEFGQLKTESE 422
+GTP+QN++ EL+SLL +EP F E F+ + ++ ES+
Sbjct: 180 LHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESK 239
Query: 423 -VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
+ V + K E VV ++ +QKKYY+ IL ++ T
Sbjct: 240 SASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENET 299
Query: 482 TSANVPNLMNTMMELRKCCIHPYLLNG 508
A L N + +LRKC HPYL +G
Sbjct: 300 --AKKVKLQNILTQLRKCVDHPYLFDG 324
Score = 132 (51.5 bits), Expect = 5.5e-30, Sum P(2) = 5.5e-30
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 71 CILADEMGLGKTIQSLTF-VDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
CIL DEMGLGKT Q++ + V + GPFLV+ PLS + NW+ E E + L+ + Y
Sbjct: 61 CILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTY 120
Score = 117 (46.2 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
LR+YQLEG+NWL+ + CIL DEMGLGKT Q++
Sbjct: 40 LRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTI 76
Score = 88 (36.0 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKE 203
GPFLV+ PLS + NW+ E E + L+ + Y G +++ +R ++
Sbjct: 90 GPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQD 133
>UNIPROTKB|C9JFU2 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953 Pfam:PF00176
PROSITE:PS50013 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 IPI:IPI00395823
HGNC:HGNC:19057 ChiTaRS:CHD6 ProteinModelPortal:C9JFU2 SMR:C9JFU2
STRING:C9JFU2 Ensembl:ENST00000309279 HOGENOM:HOG000171128
ArrayExpress:C9JFU2 Bgee:C9JFU2 Uniprot:C9JFU2
Length = 822
Score = 275 (101.9 bits), Expect = 7.0e-21, P = 7.0e-21
Identities = 68/154 (44%), Positives = 91/154 (59%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVY 128
+NCILADEMGLGKTIQS+TF+ +F GI GPFL+IAPLSTI NW+REF WT++N IVY
Sbjct: 480 KNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVY 539
Query: 129 HATFVV--LLQTGSKFFRICLEFFVDAVFKTGIR-GPFLVIAPLSTIPNWQREFEA-WTD 184
H + + ++Q +R + VFK + F +I L+ P+ ++ F W D
Sbjct: 540 HGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMI--LADCPDLKKIFWGRWKD 597
Query: 185 LNVIVYHGRRK-KLSRRDKE---RLRLKYVAADY 214
I+ HGR K L+ +D E R L Y Y
Sbjct: 598 ---ILTHGRFKWHLNEKDMEMICRALLVYCVKHY 628
Score = 239 (89.2 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 12 PASD-WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
PASD W KLEKS YKN N LR YQLEG+NWL+F+W+N +NCILADEMGLGKTIQS+T
Sbjct: 441 PASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSIT 498
Score = 202 (76.2 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 46/122 (37%), Positives = 70/122 (57%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRLKY 209
F+ +F GI GPFL+IAPLSTI NW+REF WT++N IVYHG ++SR+ ++ + Y
Sbjct: 499 FLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHG--SQISRQMIQQYEMVY 556
Query: 210 VAADYVPKDG----EVLYGNWSR--SECFKVERGLLTFGWGRWKEFLANNEFRNGWTEEY 263
A P G V+ + ++C +++ F WGRWK+ L + F+ E+
Sbjct: 557 RDAQGNPLSGVFKFHVVITTFEMILADCPDLKK---IF-WGRWKDILTHGRFKWHLNEKD 612
Query: 264 VE 265
+E
Sbjct: 613 ME 614
Score = 121 (47.7 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNW 347
SR M+Q+YE+ +R+ + + ++KFHV+ITTFE+I++DC +LK W
Sbjct: 545 SRQMIQQYEMVYRDAQGNPLS--GVFKFHVVITTFEMILADCPDLKKIFW 592
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 256 (95.2 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 66/201 (32%), Positives = 98/201 (48%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SG 382
KF+VLIT +++I+ D LK +W I+DE HRLKN C +G
Sbjct: 484 KFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTG 543
Query: 383 TPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEFGQ-----LKTESE---VNXXXXXX 430
TP+QN++ EL+SLLNFL P F++ E F + F + L E E +N
Sbjct: 544 TPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVI 603
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLM 490
+VEK + K + +++ +++ QK YY+ + + L G + +L
Sbjct: 604 RPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSK--SLQ 661
Query: 491 NTMMELRKCCIHPYLLNGKTY 511
N M+LRKCC HPYL G Y
Sbjct: 662 NLTMQLRKCCNHPYLFVGADY 682
Score = 144 (55.7 bits), Expect = 8.6e-29, Sum P(2) = 8.6e-29
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ++ + + ++ + GP L++AP + +PNW+ EF W ++ +
Sbjct: 406 NGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFL 465
Query: 128 Y 128
Y
Sbjct: 466 Y 466
Score = 133 (51.9 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
K+ K P LR+YQLEGL W++ + N N ILADEMGLGKTIQ++ L +
Sbjct: 373 KVTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESK 432
Query: 78 GL 79
L
Sbjct: 433 DL 434
Score = 95 (38.5 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
+ GP L++AP + +PNW+ EF W ++ +Y G ++K
Sbjct: 434 LHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEK 472
Score = 43 (20.2 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 219 GEVLYGNWSRSECFKVERGLLTFGWG 244
GEV W R C ER L + WG
Sbjct: 143 GEVSAEYWLRLNCADPERQL--YDWG 166
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 266 (98.7 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 69/209 (33%), Positives = 105/209 (50%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 563 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHR 614
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + + EL+SL +F+ P++FS+ E F E G+
Sbjct: 615 LKNDDSLLYKTLIDLVTIDSDTAPSCTIPQ---ELWSL-HFIMPEKFSSWEDFEEEHGKG 670
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 671 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 729
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 730 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 757
Score = 179 (68.1 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 32/61 (52%), Positives = 48/61 (78%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W +N +V
Sbjct: 497 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVV 556
Query: 128 Y 128
Y
Sbjct: 557 Y 557
Score = 142 (55.0 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GL WL SW G +CILADEMGLGKTIQ+++
Sbjct: 460 FVALKKQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTIS 514
Score = 108 (43.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--------RRKKLSR 199
F++ +F + + GPFL++ PLST+ +WQRE + W +N +VY G R +
Sbjct: 515 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMH 574
Query: 200 RDKERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 575 PQTKRLKFNILLTTYEILLKDKSFLGGLNWA 605
Score = 40 (19.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1244 DWGKEDDSNLLVGIYEYGYGSWE 1266
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQK 463
E +K KEE V E++ N +K
Sbjct: 1442 ESTQKEKEVKEEKVNEIKSENKEK 1465
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 266 (98.7 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 69/209 (33%), Positives = 105/209 (50%)
Query: 298 SRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHR 357
SRNM++ +E K KF++L+TT+EI++ D L NW +DEAHR
Sbjct: 563 SRNMIRTHEWMHPQTKR--------LKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHR 614
Query: 358 LKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LKN + + EL+ LL+F+ P++FS+ E F E G+
Sbjct: 615 LKNDDSLLYKTLIDLVTIDSDTAPSCTIPQ---ELW-LLHFIMPEKFSSWEDFEEEHGKG 670
Query: 418 KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+ E +DVEKS+ K E ++ +E++ +QK+YY+ IL RN+ L
Sbjct: 671 R-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL 729
Query: 478 SKGTTSANVPNLMNTMMELRKCCIHPYLL 506
SKG+ + +N MMEL+KCC H YL+
Sbjct: 730 SKGS-KGSTSGFLNIMMELKKCCNHCYLI 757
Score = 179 (68.1 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 32/61 (52%), Positives = 48/61 (78%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+CILADEMGLGKTIQ+++F++ +F + + GPFL++ PLST+ +WQRE + W +N +V
Sbjct: 497 SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVV 556
Query: 128 Y 128
Y
Sbjct: 557 Y 557
Score = 142 (55.0 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 16 WVKLEKSPVYKNDNT---LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+V L+K P Y + LR YQL GL WL SW G +CILADEMGLGKTIQ+++
Sbjct: 460 FVALKKQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTIS 514
Score = 108 (43.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--------RRKKLSR 199
F++ +F + + GPFL++ PLST+ +WQRE + W +N +VY G R +
Sbjct: 515 FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMH 574
Query: 200 RDKERLRLKYVAADY--VPKDGEVLYG-NWS 227
+RL+ + Y + KD L G NW+
Sbjct: 575 PQTKRLKFNILLTTYEILLKDKSFLGGLNWA 605
Score = 40 (19.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 225 NWSRSECFKVERGLLTFGWGRWK 247
+W + + + G+ +G+G W+
Sbjct: 1245 DWGKEDDSNLLVGIYEYGYGSWE 1267
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQK 463
E +K KEE V E++ N +K
Sbjct: 1443 ESTQKEKEVKEEKVNEIKSENKEK 1466
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 198 (74.8 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 55/172 (31%), Positives = 80/172 (46%)
Query: 318 KEKDLYKFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXX 376
K K + H V+IT+FEI + D L+ W+ I+DE HR+KN C+
Sbjct: 319 KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADN 378
Query: 377 XXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAF--------MSEFGQ--LKTESEVNXX 426
+GTPLQNN++EL+SLLNFL P F + ++F +SE + + E E N
Sbjct: 379 KLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVL 438
Query: 427 XXXXXXXX---XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFS 475
DV + PK E VV L+ Q+ +Y I+ R +
Sbjct: 439 HMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIA 490
Score = 180 (68.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKT+Q + + + + G+ GPFLV PLST+PNW EF+ +T D+ ++Y
Sbjct: 244 NGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPDIPTMLY 303
Query: 129 HAT 131
H T
Sbjct: 304 HGT 306
Score = 129 (50.5 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+ P + +R YQ+EG+ WL W NG N ILADEMGLGKT+Q +
Sbjct: 214 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 260
Score = 122 (48.0 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKLSRRDKER 204
+ + G+ GPFLV PLST+PNW EF+ +T D+ ++YHG R+KL + +R
Sbjct: 266 MIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKLVKNIHKR 320
Score = 75 (31.5 bits), Expect = 6.8e-33, Sum P(4) = 6.8e-33
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 467 RGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLL 506
R ++E N S+ N+ L N MM LRKCC HPYL+
Sbjct: 544 RAVVETNIPVESE----VNL-KLQNIMMLLRKCCNHPYLI 578
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 298 (110.0 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 68/202 (33%), Positives = 104/202 (51%)
Query: 312 DKNQFIKE--KDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXX 369
DK +++ K +FHVL+TT+EI + D LK F W + ++DEAHRLKN++
Sbjct: 133 DKRACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTL 192
Query: 370 XXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNN--EAFMSEFGQLKTESE-VNXX 426
+GTP+QN++ EL+SLL+F+EP FS E F+ + ++ ESE +
Sbjct: 193 SEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASEL 252
Query: 427 XXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANV 486
+V + K E V+ ++ +QKKYY+ IL ++ T A
Sbjct: 253 YKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENET--AKK 310
Query: 487 PNLMNTMMELRKCCIHPYLLNG 508
L N + +LRKC HPYL +G
Sbjct: 311 VKLQNVLSQLRKCVDHPYLFDG 332
Score = 133 (51.9 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 71 CILADEMGLGKTIQSLT-FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
CIL DEMGLGKT Q++ F+ + GPFL++ PLS + NW+ E E + L+ + Y
Sbjct: 69 CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTY 128
Score = 112 (44.5 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
LR YQL+G+NWL + CIL DEMGLGKT Q++ LA +
Sbjct: 48 LRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 94
Score = 87 (35.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 147 LEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLS--RRD-K 202
+ F+ + GPFL++ PLS + NW+ E E + L+ + Y G + K + ++D K
Sbjct: 84 IALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLK 143
Query: 203 ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+ R + Y KD L WS
Sbjct: 144 QESRFHVLLTTYEICLKDASFLKSFPWS 171
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 299 (110.3 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 67/197 (34%), Positives = 103/197 (52%)
Query: 315 QFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXX 374
Q +K++ +FHVL+TT+EI + D LK F W + ++DEAHRLKN++
Sbjct: 138 QDLKQES--RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSV 195
Query: 375 XXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEA--FMSEFGQLKTESE-VNXXXXXXX 431
+GTP+QN++ EL+SLL+F+EP FS E F+ + ++ ESE +
Sbjct: 196 VFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQ 255
Query: 432 XXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMN 491
+V + K E V+ ++ +QKKYY+ IL ++ T A L N
Sbjct: 256 PFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENET--AKKVKLQN 313
Query: 492 TMMELRKCCIHPYLLNG 508
+ +LRKC HPYL +G
Sbjct: 314 ILSQLRKCVDHPYLFDG 330
Score = 130 (50.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 71 CILADEMGLGKTIQSLT-FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
CIL DEMGLGKT Q++ F+ + GPFL++ PLS + NW+ E + + L+ + Y
Sbjct: 67 CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTY 126
Score = 117 (46.2 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
LR+YQLEG+NWL + CIL DEMGLGKT Q++ LA +
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 92
Score = 82 (33.9 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 147 LEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLS--RRD-K 202
+ F+ + GPFL++ PLS + NW+ E + + L+ + Y G +++ + ++D K
Sbjct: 82 IALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLK 141
Query: 203 ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+ R + Y KD L WS
Sbjct: 142 QESRFHVLLTTYEICLKDASFLKSFPWS 169
Score = 37 (18.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 196 KLSRRDKERLRLKYVAADYV-PKDG 219
+L +D + LKYV+ D P+ G
Sbjct: 706 ELDYQDPDATSLKYVSGDVTHPQAG 730
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 198 (74.8 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 55/172 (31%), Positives = 80/172 (46%)
Query: 318 KEKDLYKFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXX 376
K K + H V+IT+FEI + D L+ W+ I+DE HR+KN C+
Sbjct: 318 KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADN 377
Query: 377 XXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAF--------MSEFGQ--LKTESEVNXX 426
+GTPLQNN++EL+SLLNFL P F + ++F +SE + + E E N
Sbjct: 378 KLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVL 437
Query: 427 XXXXXXXX---XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFS 475
DV + PK E VV L+ Q+ +Y I+ R +
Sbjct: 438 HMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIA 489
Score = 179 (68.1 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKT+Q + + + + G+ GPFLV PLST+PNW EF+ +T D+ ++Y
Sbjct: 243 NGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLY 302
Query: 129 HAT 131
H T
Sbjct: 303 HGT 305
Score = 129 (50.5 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+ P + +R YQ+EG+ WL W NG N ILADEMGLGKT+Q +
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 259
Score = 122 (48.0 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKLSRRDKER 204
+ + G+ GPFLV PLST+PNW EF+ +T D+ ++YHG R+KL R +R
Sbjct: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKR 319
Score = 73 (30.8 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 489 LMNTMMELRKCCIHPYLL 506
L N MM LRKCC HPYL+
Sbjct: 560 LQNIMMLLRKCCNHPYLI 577
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 201 (75.8 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 56/176 (31%), Positives = 81/176 (46%)
Query: 314 NQFIKEKDLYKFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
N K K + H V+IT+FEI + D L+ W+ I+DE HR+KN C+
Sbjct: 314 NHIHKRKGTLQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 373
Query: 373 XXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAF--------MSEFGQ--LKTESE 422
+GTPLQNN++EL+SLLNFL P F + ++F +SE + + E E
Sbjct: 374 NADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 433
Query: 423 VNXXXXXXXXXX---XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFS 475
N DV + PK E VV L+ Q+ +Y I+ R +
Sbjct: 434 QNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNRTIT 489
Score = 172 (65.6 bits), Expect = 3.9e-29, Sum P(3) = 3.9e-29
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKT+Q + + + + G+ GPFLV PLST+PNW EF+ +T ++ ++Y
Sbjct: 243 NGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPEIPTMLY 302
Query: 129 HAT 131
H +
Sbjct: 303 HGS 305
Score = 129 (50.5 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+ P + +R YQ+EG+ WL W NG N ILADEMGLGKT+Q +
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 259
Score = 116 (45.9 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKL 197
+ + G+ GPFLV PLST+PNW EF+ +T ++ ++YHG R+KL
Sbjct: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKL 312
Score = 75 (31.5 bits), Expect = 1.2e-32, Sum P(4) = 1.2e-32
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 467 RGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLL 506
R ++E N S+ N+ L N MM LRKCC HPYL+
Sbjct: 543 RAVVETNIPVESE----VNL-KLQNIMMLLRKCCNHPYLI 577
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 198 (74.8 bits), Expect = 1.7e-32, Sum P(4) = 1.7e-32
Identities = 60/183 (32%), Positives = 79/183 (43%)
Query: 324 KFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSG 382
K H V+IT+FEI + D L+ W+ I+DE HR+KN NC+ +G
Sbjct: 323 KIHPVVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTG 382
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ----------LKTESEVNXXXXXXXX 432
TPLQNN+ EL+SLLNFL P F + ++F S F + E E N
Sbjct: 383 TPLQNNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQNILHMLHQI 442
Query: 433 XX---XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489
DV + PK E VV L Q+ +Y I+ R L G V L
Sbjct: 443 LTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAIVNRTIRNLL-GNNEEEVVEL 501
Query: 490 MNT 492
T
Sbjct: 502 SPT 504
Score = 171 (65.3 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKTIQ + + + + G+ GPFLV PLST+PNW EF+ +T ++ +++Y
Sbjct: 242 NGILADEMGLGKTIQCIATIALMVERGVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLY 301
Query: 129 H 129
H
Sbjct: 302 H 302
Score = 129 (50.5 bits), Expect = 1.7e-32, Sum P(4) = 1.7e-32
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
+ P +R YQ+EG+ WL W NG N ILADEMGLGKTIQ + ++ +
Sbjct: 212 QQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIALMVE 266
Score = 120 (47.3 bits), Expect = 1.7e-32, Sum P(4) = 1.7e-32
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKLSRR 200
G+ GPFLV PLST+PNW EF+ +T ++ +++YHG R+KL R+
Sbjct: 268 GVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRK 314
Score = 73 (30.8 bits), Expect = 1.7e-32, Sum P(4) = 1.7e-32
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 489 LMNTMMELRKCCIHPYLL 506
L N MM LRKCC HPYL+
Sbjct: 560 LQNIMMLLRKCCNHPYLI 577
Score = 37 (18.1 bits), Expect = 8.5e-12, Sum P(3) = 8.5e-12
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 303 QEYELFFRNDKNQFIKEKDL 322
++YE + K + I +KDL
Sbjct: 778 RDYEREVKGSKEKVISDKDL 797
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 293 (108.2 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 67/202 (33%), Positives = 103/202 (50%)
Query: 312 DKNQFIKE--KDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXX 369
DK +++ K +FHVL+TT+EI + D LK F W + ++DEAHRLKN++
Sbjct: 133 DKRACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTL 192
Query: 370 XXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNN--EAFMSEFGQLKTESE-VNXX 426
+GTP+QN++ EL+SLL+F+EP FS E F+ + ++ ESE +
Sbjct: 193 SEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESESASEL 252
Query: 427 XXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANV 486
+V + K E V+ ++ +QKKYY+ IL ++ A
Sbjct: 253 YKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFEN--EMAKK 310
Query: 487 PNLMNTMMELRKCCIHPYLLNG 508
L N + +LRKC HPYL +G
Sbjct: 311 VKLQNVLSQLRKCVDHPYLFDG 332
Score = 133 (51.9 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 71 CILADEMGLGKTIQSLT-FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
CIL DEMGLGKT Q++ F+ + GPFL++ PLS + NW+ E E + L+ + Y
Sbjct: 69 CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTY 128
Score = 112 (44.5 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
LR YQL+G+NWL + CIL DEMGLGKT Q++ LA +
Sbjct: 48 LRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 94
Score = 87 (35.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 147 LEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLS--RRD-K 202
+ F+ + GPFL++ PLS + NW+ E E + L+ + Y G + K + ++D K
Sbjct: 84 IALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLK 143
Query: 203 ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+ R + Y KD L WS
Sbjct: 144 QESRFHVLLTTYEICLKDASFLKSFPWS 171
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 293 (108.2 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 67/211 (31%), Positives = 108/211 (51%)
Query: 307 LFFRNDKNQFIK-EKDLY---KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRN 362
+ + DK + + ++DL +FHVL+TT+EI + D LK F W + ++DEAHRLKN+N
Sbjct: 126 VMYAGDKEERARLQQDLKQESRFHVLLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQN 185
Query: 363 CKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEA--FMSEFGQLKTE 420
+GTP+QN++ EL+SLL+F+EP F + F+ + ++ E
Sbjct: 186 SLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPKEQVGDFVQRYQDIEKE 245
Query: 421 SE-VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSK 479
S+ + +V + K E V+ ++ +QKKYY+ IL ++
Sbjct: 246 SDSASELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFE- 304
Query: 480 GTTSANVPNLMNTMMELRKCCIHPYLLNGKT 510
+ A L N + +LRKC HPYL G+T
Sbjct: 305 -SEMAKKVKLQNVLSQLRKCVDHPYLFEGET 334
Score = 132 (51.5 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 71 CILADEMGLGKTIQSLT-FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
CIL DEMGLGKT Q++ F+ + GPFL++ PLS + NW E E + L+ ++Y
Sbjct: 69 CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWTEEMERFAPGLSCVMY 128
Score = 117 (46.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
LR+YQLEG+NWL + CIL DEMGLGKT Q++ LA +
Sbjct: 48 LRSYQLEGVNWLARCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRL 94
Score = 88 (36.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 147 LEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSR--RD-K 202
+ F+ + GPFL++ PLS + NW E E + L+ ++Y G +++ +R +D K
Sbjct: 84 IALFIYLAGRLNDEGPFLILCPLSVLSNWTEEMERFAPGLSCVMYAGDKEERARLQQDLK 143
Query: 203 ERLRLKYVAADY--VPKDGEVLYG-NWS 227
+ R + Y KD L WS
Sbjct: 144 QESRFHVLLTTYEICLKDSSFLKSFPWS 171
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 198 (74.8 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 54/172 (31%), Positives = 81/172 (47%)
Query: 318 KEKDLYKFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXX 376
+ K + H V+IT+FEI + D L++ W+ I+DE HR+KN C+
Sbjct: 296 ERKGTLQIHPVVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADN 355
Query: 377 XXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAF--------MSEFGQ--LKTESEVNXX 426
+GTPLQNN++EL+SLLNFL P F + ++F +SE + + E E N
Sbjct: 356 KLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVL 415
Query: 427 XXXXXXXX---XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFS 475
DV + PK E VV L+ Q+ +Y I+ R +
Sbjct: 416 HMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIA 467
Score = 175 (66.7 bits), Expect = 6.0e-29, Sum P(3) = 6.0e-29
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKT+Q + + + + G+ GPFLV PLST+PNW EF+ +T ++ ++Y
Sbjct: 221 NGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTMLY 280
Query: 129 HAT 131
H T
Sbjct: 281 HGT 283
Score = 129 (50.5 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+ P + +R YQ+EG+ WL W NG N ILADEMGLGKT+Q +
Sbjct: 191 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 237
Score = 114 (45.2 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
+ + G+ GPFLV PLST+PNW EF+ +T ++ ++YHG +++
Sbjct: 243 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQE 286
Score = 73 (30.8 bits), Expect = 6.1e-32, Sum P(4) = 6.1e-32
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 489 LMNTMMELRKCCIHPYLL 506
L N MM LRKCC HPYL+
Sbjct: 538 LQNIMMLLRKCCNHPYLI 555
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 242 (90.2 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 67/210 (31%), Positives = 108/210 (51%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 263 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 322
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 323 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 382
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E V + L+ +Q++++ IL S S +
Sbjct: 383 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFV-ILAFFISENSNNS 441
Query: 482 TSANVPNLMNTMMELR--KCCIHPYLLNGK 509
+ +++N +M LR KCC + L K
Sbjct: 442 NKNHKLDILNVIMLLREAKCCGASFCLQKK 471
Score = 145 (56.1 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 17 VKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
V+ E SP Y LR YQ+ GLNWL+ + NG N ILADEMGLGKT+Q++
Sbjct: 169 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 219
Score = 132 (51.5 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI
Sbjct: 203 NGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVIC 262
Query: 128 Y 128
+
Sbjct: 263 F 263
Score = 82 (33.9 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 231 IPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVG 265
Score = 39 (18.8 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY 323
+ Q + + + D NQFIK + Y
Sbjct: 858 LTQGFTNWTKRDFNQFIKANEKY 880
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 238 (88.8 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 66/196 (33%), Positives = 95/196 (48%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXX-XXXXXXSG 382
KF+VL+TTFE +I + L W+ IIDE HRLKN++CK +G
Sbjct: 464 KFNVLLTTFEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITG 523
Query: 383 TPLQNNVNELFSLLNFLEPQQFSN--------NEAFMS-----EFGQLKTESEVNXXXXX 429
TPLQN + EL++LLNFL P FS+ N F + E Q +T +
Sbjct: 524 TPLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRLHKV 583
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489
++VE + K E VV +++ +QK Y+ + + L G T+ +L
Sbjct: 584 LRPFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYKHMQK---GLLLDGKTNTGSKSL 640
Query: 490 MNTMMELRKCCIHPYL 505
NTM+ LRK C HP+L
Sbjct: 641 RNTMIHLRKLCNHPFL 656
Score = 175 (66.7 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ++ F+ + + GPFLVI PLST+PNWQ EF+ W ++++I
Sbjct: 386 NGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTVPNWQNEFDKWAANVHLIA 445
Query: 128 Y 128
Y
Sbjct: 446 Y 446
Score = 118 (46.6 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK 195
GPFLVI PLST+PNWQ EF+ W ++++I Y G ++
Sbjct: 416 GPFLVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKE 451
Score = 111 (44.1 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
L+ YQ++GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 366 LKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTI 402
Score = 39 (18.8 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 303 QEYELFFRNDKNQFIKEK 320
+E+ELF + D+ +F E+
Sbjct: 881 EEFELFQKMDQERFENEQ 898
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 235 (87.8 bits), Expect = 6.5e-30, Sum P(3) = 6.5e-30
Identities = 65/197 (32%), Positives = 95/197 (48%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SGT 383
F+VL+TTFE II D L W IIDE HR+KN K +GT
Sbjct: 968 FNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGT 1027
Query: 384 PLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF----GQLK---TESE----VNXXXX 428
PLQNN+ EL++LLNF+ P+ F++ +E F + F GQ K E E +
Sbjct: 1028 PLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLHK 1087
Query: 429 XXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPN 488
+DVEK + K E V++ L+ +Q K Y+ + + F+ +
Sbjct: 1088 VLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTGIKG 1147
Query: 489 LMNTMMELRKCCIHPYL 505
L NT+M+L+K C HP++
Sbjct: 1148 LQNTVMQLKKICNHPFI 1164
Score = 160 (61.4 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ++ F+ + K +GPFL+I PLST+ NW EFE W + I
Sbjct: 889 NGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIA 948
Query: 128 Y 128
Y
Sbjct: 949 Y 949
Score = 120 (47.3 bits), Expect = 6.5e-30, Sum P(3) = 6.5e-30
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++E+ ++ TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 857 EVEQPKIFVG-GTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTI 905
Score = 108 (43.1 bits), Expect = 6.5e-30, Sum P(3) = 6.5e-30
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 147 LEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGR---RKKL-SRRD 201
+ F + K +GPFL+I PLST+ NW EFE W + I Y G RK L S+
Sbjct: 905 IAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIR 964
Query: 202 KERLRLKYVAADYVPKDGEVL 222
+ +Y+ KD +L
Sbjct: 965 SSNFNVLLTTFEYIIKDRPLL 985
Score = 37 (18.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 307 LFFRNDKNQFIKEKDL 322
L FRN K Q ++E +L
Sbjct: 681 LMFRNVKRQTMQEANL 696
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 230 (86.0 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 70/240 (29%), Positives = 111/240 (46%)
Query: 279 KSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISD 338
K++ P++ + T +S +R M QE+E+F R D DL + HV+IT++E ++ D
Sbjct: 674 KTWVPSLRAVT--YYGSSLARKMAQEHEMFIRGDP-------DL-RCHVVITSYETMVDD 723
Query: 339 -CLE-LKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLL 396
C + L W I+DE RLK+ + +GTPLQNN ELF+LL
Sbjct: 724 SCRKVLSRIPWAGLIVDEGQRLKSDKSQIYEGLSKMKFPFKVLMTGTPLQNNTKELFNLL 783
Query: 397 NFLEPQQFSNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEV 456
F + Q N E ++G L E+ + V + P + +V V
Sbjct: 784 QFCD--QSKNAEELEEKYGTLSKEN-IPELHELIRPFFLRRTKAQVLTFLPPVVQIIVPV 840
Query: 457 ELTNIQKKYYRGILERNFSFLSK--GTTSANVP-------NLMNTMMELRKCCIHPYLLN 507
++ +QKK Y+ IL +N + + P NL N +M+LRKC HP++ +
Sbjct: 841 TMSVLQKKLYKSILAKNTQLIKAIFQRNEEDQPLKQTERHNLNNILMQLRKCLCHPFIFS 900
Score = 145 (56.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
+N ILADEMGLGKTIQ + + + + PFL++ P ST PNW++E + W L +
Sbjct: 625 QNAILADEMGLGKTIQVIGLLATLVQDHKCWPFLIVVPNSTCPNWRKELKTWVPSLRAVT 684
Query: 128 YHATFVV--LLQTGSKFFR 144
Y+ + + + Q F R
Sbjct: 685 YYGSSLARKMAQEHEMFIR 703
Score = 136 (52.9 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 26/46 (56%), Positives = 29/46 (63%)
Query: 20 EKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
E P + YQ +GLNWL F WF +N ILADEMGLGKTIQ
Sbjct: 595 EAQPRIMTGGEIMDYQRDGLNWLYFKWFKQQNAILADEMGLGKTIQ 640
Score = 93 (37.8 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 162 PFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRR 200
PFL++ P ST PNW++E + W L + Y+G L+R+
Sbjct: 656 PFLIVVPNSTCPNWRKELKTWVPSLRAVTYYG--SSLARK 693
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 209 (78.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 53/164 (32%), Positives = 82/164 (50%)
Query: 327 VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQ 386
V++T+FEI + D L+ F+W I+DE HR+KN NC+ +GTPLQ
Sbjct: 338 VVVTSFEIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQ 397
Query: 387 NNVNELFSLLNFLEPQQFSNNEAFMSEF--GQLKTESE-----------VNXXXXXXXXX 433
NN++EL+SLLNFL P F + ++F S F + +++E ++
Sbjct: 398 NNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQNILHMLHLILTPF 457
Query: 434 XXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
DV + PK+E VV LTN Q+ +Y I+ + + L
Sbjct: 458 LLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVNKTIAKL 501
Score = 175 (66.7 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 33/61 (54%), Positives = 47/61 (77%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKTIQ + + + + + GPFLV+APLST+PNW EF+ +T +++V++Y
Sbjct: 253 NGILADEMGLGKTIQCIAHIAMMVEKKVLGPFLVVAPLSTLPNWISEFKRFTPEVSVLLY 312
Query: 129 H 129
H
Sbjct: 313 H 313
Score = 136 (52.9 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLG 80
+ P +R YQ+EG+ WL W NG N ILADEMGLGKTIQ + ++ ++ LG
Sbjct: 223 QQPQLFTGGVMRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVEKKVLG 282
Score = 123 (48.4 bits), Expect = 3.1e-24, Sum P(4) = 3.1e-24
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 146 CLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
C+ V K + GPFLV+APLST+PNW EF+ +T +++V++YHG +K+
Sbjct: 268 CIAHIAMMVEKK-VLGPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQKE 318
Score = 56 (24.8 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 489 LMNTMMELRKCCIHPYLL 506
L N +M L++CC H YL+
Sbjct: 576 LQNILMLLKRCCNHAYLI 593
Score = 50 (22.7 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 1 MSLIKKPKKKPPASDWVKLEKSPVYKNDNT 30
MS KKPK + A VKLE + K +T
Sbjct: 160 MSKAKKPKMEEEAQASVKLEAEDIEKLSDT 189
Score = 40 (19.1 bits), Expect = 6.1e-12, Sum P(4) = 6.1e-12
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 177 REFEAWTDLNVIVYHGRRKKLSRRDKERLRLKYV 210
+ FE+W D++ I + R++ L + ++
Sbjct: 419 KSFESWFDISTITSDAENIVANEREQNILHMLHL 452
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 199 (75.1 bits), Expect = 6.0e-29, Sum P(3) = 6.0e-29
Identities = 56/184 (30%), Positives = 85/184 (46%)
Query: 310 RNDKNQFIKE----KDLYKFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
R D+ + +K + + H V++T+FEI + D L+ W+ I+DE HR+KN C+
Sbjct: 289 REDRRKLVKNIHKRQGTLQIHPVVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCR 348
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAF--------MSEFGQ 416
+GTPLQNN++EL+SLLNFL P F + ++F +SE +
Sbjct: 349 LIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAE 408
Query: 417 --LKTESEVNXXXXXXXXXX---XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
+ E E N DV + PK E VV L N Q+ +Y I+
Sbjct: 409 DIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVN 468
Query: 472 RNFS 475
R +
Sbjct: 469 RTIA 472
Score = 176 (67.0 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKT+Q + + + + G+ GPFLV PLST+PNW EF+ +T ++ ++Y
Sbjct: 226 NGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLLY 285
Query: 129 HAT 131
H T
Sbjct: 286 HGT 288
Score = 129 (50.5 bits), Expect = 6.0e-29, Sum P(3) = 6.0e-29
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+ P + +R YQ+EG+ WL W NG N ILADEMGLGKT+Q +
Sbjct: 196 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 242
Score = 118 (46.6 bits), Expect = 6.0e-29, Sum P(3) = 6.0e-29
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK 195
+ + G+ GPFLV PLST+PNW EF+ +T ++ ++YHG R+
Sbjct: 248 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTRE 290
Score = 72 (30.4 bits), Expect = 3.5e-15, Sum P(3) = 3.5e-15
Identities = 23/101 (22%), Positives = 47/101 (46%)
Query: 407 NEAFMSEFGQLKTES-EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKY 465
N + FG + E+ E++ ++++ + E+ + +++ + ++
Sbjct: 468 NRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQ-PEVNRE- 525
Query: 466 YRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLL 506
R ++E N S+ N+ L N MM LRKCC HPY++
Sbjct: 526 -RTVVEGNIPIESE----VNL-KLRNIMMLLRKCCNHPYMI 560
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 231 (86.4 bits), Expect = 6.2e-29, Sum P(3) = 6.2e-29
Identities = 64/195 (32%), Positives = 93/195 (47%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SGT 383
F+VL+TT+E +I + L W+ IIDE HRLKN NCK +GT
Sbjct: 632 FNVLMTTYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGT 691
Query: 384 PLQNNVNELFSLLNFLEPQQFSN--------NEAFMS-----EFGQLKTESEVNXXXXXX 430
PLQN + EL++LLNFL P FS+ N F + E Q +T +
Sbjct: 692 PLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVL 751
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLM 490
++VE + K E V++ + + +QK YR + + L S+ +LM
Sbjct: 752 RPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQK---GLLLDAKMSSGARSLM 808
Query: 491 NTMMELRKCCIHPYL 505
NT++ LRK C HP+L
Sbjct: 809 NTVVHLRKLCNHPFL 823
Score = 160 (61.4 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIR-GPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ V + + GP+LVI PLST+ NWQ EF W + I+
Sbjct: 553 NGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLSTLSNWQNEFAKWAPSVTTII 612
Query: 128 YHAT 131
Y T
Sbjct: 613 YKGT 616
Score = 113 (44.8 bits), Expect = 6.2e-29, Sum P(3) = 6.2e-29
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
L+ YQ++GL W++ + N N ILADEMGLGKTIQ+++
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTIS 570
Score = 108 (43.1 bits), Expect = 6.2e-29, Sum P(3) = 6.2e-29
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLR 206
GP+LVI PLST+ NWQ EF W + I+Y G K RR + ++R
Sbjct: 583 GPYLVIVPLSTLSNWQNEFAKWAPSVTTIIYKGT-KDARRRVEGQIR 628
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 186 NVIVYHGRRKKLSRRDKERLR-LKYVAADYVPKDGEVL 222
+V++ H ++KK E++ + V +Y +DGE++
Sbjct: 1168 DVVLQH-KKKKTDPELAEKINEMLDVILEYKNEDGELI 1204
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 229 (85.7 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 66/235 (28%), Positives = 105/235 (44%)
Query: 279 KSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISD 338
K ++P + L + +R+++++Y L NQ K+ HVL+ + + +
Sbjct: 624 KKWAPFLQINV--LVGSEKNRSLVRDYRLI-----NQ--KDPKHVSTHVLVISASNVERE 674
Query: 339 CLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNF 398
L+ F W++ I+DE RLKN +GTPLQNNV ELF+LL F
Sbjct: 675 ISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQF 734
Query: 399 LEPQQFSNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVEL 458
L P + + E + + TE +V +V + K E ++ + +
Sbjct: 735 LNPMKINAAE-LEKRYSIIDTE-KVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLSM 792
Query: 459 TNIQKKYYRGILERNFSFLSKGTTSANVPN--------LMNTMMELRKCCIHPYL 505
T +QK Y+ IL +N S L T AN + L N +M+LRK HPY+
Sbjct: 793 TPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTTSLNNILMQLRKTLAHPYI 847
Score = 149 (57.5 bits), Expect = 6.9e-26, Sum P(2) = 6.9e-26
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 71 CILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT---DLNVIV 127
CILADEMGLGKT+Q ++F+ +F P LVI P +T+ NW+RE + W +NV+V
Sbjct: 577 CILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLV 636
Score = 139 (54.0 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 23 PVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
P + TL YQL+GLNWL W+ CILADEMGLGKT+Q ++
Sbjct: 548 PSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVIS 593
Score = 82 (33.9 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT---DLNVIVYHGRRKKLSR 199
F+ +F P LVI P +T+ NW+RE + W +NV+V + + L R
Sbjct: 594 FISVLFYRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVR 646
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 198 (74.8 bits), Expect = 4.5e-28, Sum P(3) = 4.5e-28
Identities = 57/176 (32%), Positives = 85/176 (48%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SGT 383
F VL+TT+E II D L +W IIDE HR+KN K +GT
Sbjct: 569 FDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGT 628
Query: 384 PLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG--------QLK---TESE----VNXXXX 428
PLQNN+ EL++LLNF+ P+ F++ + F F Q K TE E +
Sbjct: 629 PLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHK 688
Query: 429 XXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSA 484
++VEK + K E V++ +L+ +Q++ Y+ +L+ N F+ GT A
Sbjct: 689 VLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGA 744
Score = 177 (67.4 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 39/65 (60%), Positives = 45/65 (69%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF--KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVI 126
N ILADEMGLGKTIQS++ + ++ K I GPFLVI PLSTI NW EFE W LN I
Sbjct: 490 NGILADEMGLGKTIQSISLITYLYEVKKDI-GPFLVIVPLSTITNWTLEFEKWAPSLNTI 548
Query: 127 VYHAT 131
+Y T
Sbjct: 549 IYKGT 553
Score = 132 (51.5 bits), Expect = 4.5e-28, Sum P(3) = 4.5e-28
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
K++K P TL+ YQL GL W++ + N N ILADEMGLGKTIQS++
Sbjct: 457 KIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSIS 507
Score = 124 (48.7 bits), Expect = 7.2e-20, Sum P(3) = 7.2e-20
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT---TSANVPNLMNTMMEL 496
++VEK + K E V++ +L+ +Q++ Y+ +L+ N F+ GT T + L N +M+L
Sbjct: 700 KEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQL 759
Query: 497 RKCCIHPYLLN 507
RK C HP++ +
Sbjct: 760 RKICNHPFVFD 770
Score = 116 (45.9 bits), Expect = 4.5e-28, Sum P(3) = 4.5e-28
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKLSRRDKE-RLRLKYVAADYV 215
GPFLVI PLSTI NW EFE W LN I+Y G +R L + + + +Y+
Sbjct: 520 GPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI 579
Query: 216 PKDGEVL 222
KD +L
Sbjct: 580 IKDKSLL 586
Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 176 QREF-EAWTDLNVIVYHGRRKKLSRRDKERLR 206
+ +F EA D N+ + +K+ R++ RLR
Sbjct: 1065 EEQFLEAVEDDNMSLEDAIKKRREARERRRLR 1096
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 184 (69.8 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 326 HVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPL 385
++++T++EI I D +L NW+ I+DE HRLKN C +GTPL
Sbjct: 274 NIILTSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPL 333
Query: 386 QNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
QNN+NEL+SLLNF+ P F + E F F
Sbjct: 334 QNNLNELWSLLNFILPDIFHDLELFQQWF 362
Score = 154 (59.3 bits), Expect = 9.3e-25, Sum P(3) = 9.3e-25
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKT+Q ++F+ + + GI GPFLV+ P+ST+ NW E + + V Y
Sbjct: 195 NGILADEMGLGKTLQCISFLSHLIENGINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKY 254
Query: 129 HAT 131
T
Sbjct: 255 IGT 257
Score = 122 (48.0 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+K S + K P L+ YQ++GL WL+ + NG N ILADEMGLGKT+Q ++
Sbjct: 153 EKSQNSSKITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCIS 212
Score = 96 (38.9 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 146 CLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKER 204
C+ F + + + GI GPFLV+ P+ST+ NW E + + V Y G +++ R D +
Sbjct: 210 CISF-LSHLIENGINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQE--RNDIDL 266
Query: 205 LR 206
L+
Sbjct: 267 LQ 268
Score = 70 (29.7 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKK-YYRGILERNFSFL 477
DV K++ PK+E ++ + +T +QKK YY + ++ F L
Sbjct: 416 DVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSL 453
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 184 (69.8 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 326 HVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPL 385
++++T++EI I D +L NW+ I+DE HRLKN C +GTPL
Sbjct: 274 NIILTSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPL 333
Query: 386 QNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
QNN+NEL+SLLNF+ P F + E F F
Sbjct: 334 QNNLNELWSLLNFILPDIFHDLELFQQWF 362
Score = 154 (59.3 bits), Expect = 9.3e-25, Sum P(3) = 9.3e-25
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKT+Q ++F+ + + GI GPFLV+ P+ST+ NW E + + V Y
Sbjct: 195 NGILADEMGLGKTLQCISFLSHLIENGINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKY 254
Query: 129 HAT 131
T
Sbjct: 255 IGT 257
Score = 122 (48.0 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 9 KKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+K S + K P L+ YQ++GL WL+ + NG N ILADEMGLGKT+Q ++
Sbjct: 153 EKSQNSSKITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCIS 212
Score = 96 (38.9 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 146 CLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKER 204
C+ F + + + GI GPFLV+ P+ST+ NW E + + V Y G +++ R D +
Sbjct: 210 CISF-LSHLIENGINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQE--RNDIDL 266
Query: 205 LR 206
L+
Sbjct: 267 LQ 268
Score = 70 (29.7 bits), Expect = 2.7e-27, Sum P(4) = 2.7e-27
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKK-YYRGILERNFSFL 477
DV K++ PK+E ++ + +T +QKK YY + ++ F L
Sbjct: 416 DVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSL 453
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 205 (77.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 62/198 (31%), Positives = 93/198 (46%)
Query: 289 TDGLKSA--SASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFN 346
T G+K+ +R+ + F N ++Q K D F V+ T++EI ++D L +
Sbjct: 273 TPGIKTVLYHGTRDERAQLRKKFMNLRDQ--KSPD---FPVVCTSYEICMNDRKFLAQYQ 327
Query: 347 WRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSN 406
WR I+DE HRLKN NC+ +GTPLQNN+ EL+SLL+FL P+ F++
Sbjct: 328 WRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLPEIFND 387
Query: 407 NEAFMSEF---------GQL-----KTESEVNXXXXXXXXXXXXXXXEDVEKSIAPKEET 452
+F + F GQ + + V+ DVE ++ K E
Sbjct: 388 LNSFQNWFDFSSVLDNNGQTDMIERRKRTLVSTMHSILKPFLLRRVKTDVESALPKKREY 447
Query: 453 VVEVELTNIQKKYYRGIL 470
++ LT QK YR IL
Sbjct: 448 ILYAPLTLEQKDLYREIL 465
Score = 177 (67.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 40/87 (45%), Positives = 54/87 (62%)
Query: 64 IQSLTRN--C-ILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEA 119
++SL N C ILADEMGLGKT+Q+++ + A FK + GPFL+ APLST+ NW EF
Sbjct: 213 LKSLWMNGLCGILADEMGLGKTVQAISLI-AFFKEHNVSGPFLISAPLSTVSNWVDEFAR 271
Query: 120 WTD-LNVIVYHATFVVLLQTGSKFFRI 145
WT + ++YH T Q KF +
Sbjct: 272 WTPGIKTVLYHGTRDERAQLRKKFMNL 298
Score = 129 (50.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
+ P +R YQLEGL WL W NG ILADEMGLGKT+Q+++
Sbjct: 192 QQPAPVTGGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAIS 239
Score = 122 (48.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 153 AVFKT-GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
A FK + GPFL+ APLST+ NW EF WT + ++YHG R + ++ K+ + L+
Sbjct: 242 AFFKEHNVSGPFLISAPLSTVSNWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLR 299
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 161 (61.7 bits), Expect = 3.3e-26, Sum P(4) = 3.3e-26
Identities = 41/130 (31%), Positives = 62/130 (47%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
++VLIT++++++ D LK +W I+DEAH +KN + +GTP
Sbjct: 925 WNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTP 984
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESEVNXXXXXXXXXXXXXXXEDVEK 444
LQNN+ EL+SLL FL P +EA + F L+ SE +D K
Sbjct: 985 LQNNLTELWSLLFFLMPTD--GDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAK 1042
Query: 445 SIAPKEETVV 454
+ K TV+
Sbjct: 1043 QVVTKLHTVL 1052
Score = 139 (54.0 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 70 NCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKTIQ++ + + G+ GP LV+ P S I NW+ EF+ W ++
Sbjct: 845 NGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMT 904
Query: 128 YH 129
Y+
Sbjct: 905 YY 906
Score = 121 (47.7 bits), Expect = 3.3e-26, Sum P(4) = 3.3e-26
Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 1 MSLIKKPKKK---PPASDWVKLEKSPV-YKNDNTLRAYQLEGLNWLMFSWFNGRNCILAD 56
+S I+ P +K P S L K+P+ + TLR YQ GL+WL + N N ILAD
Sbjct: 792 VSSIEAPAEKHAQPSESPGPGL-KTPIPHLLRGTLREYQHFGLDWLAGLYSNHINGILAD 850
Query: 57 EMGLGKTIQSLTRNCILADEMGL 79
EMGLGKTIQ++ LA E G+
Sbjct: 851 EMGLGKTIQTIALLAHLAVEHGV 873
Score = 100 (40.3 bits), Expect = 3.3e-26, Sum P(4) = 3.3e-26
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKER 204
G+ GP LV+ P S I NW+ EF+ W ++ Y+G +++ RR K R
Sbjct: 872 GVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEE--RRQKRR 917
Score = 96 (38.9 bits), Expect = 3.3e-26, Sum P(4) = 3.3e-26
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCC 500
DVEK + K E VV L+ Q+ Y G + R + + S N +++N +M+LRK C
Sbjct: 1063 DVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSR--AQTKETLASGNYLSIINCLMQLRKVC 1120
Query: 501 IHPYL 505
HP L
Sbjct: 1121 NHPDL 1125
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 193 (73.0 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 42/106 (39%), Positives = 60/106 (56%)
Query: 313 KNQFIKEKDLYKFH----VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXX 368
K + K K+ +K H ++IT++EII+ D + NW+ I+DE HRLKN NC+
Sbjct: 308 KERSAKLKNFFKQHGGTGIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKE 367
Query: 369 XXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQNN+ EL+SLLNF+ P F++ E F F
Sbjct: 368 LKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWF 413
Score = 174 (66.3 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 40/87 (45%), Positives = 53/87 (60%)
Query: 50 RNCILADEM--GLGK--TIQSLTRNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIA 105
+NCIL GL T+ N ILADEMGLGKT+QS+ + +++ +GPFLV A
Sbjct: 218 KNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTA 277
Query: 106 PLSTIPNWQREFEAWT-DLNVIVYHAT 131
PLST+ NW EF + DL V+ Y+ T
Sbjct: 278 PLSTLDNWMNEFAKFAPDLPVLKYYGT 304
Score = 137 (53.3 bits), Expect = 5.4e-22, Sum P(3) = 5.4e-22
Identities = 28/47 (59%), Positives = 34/47 (72%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
K P + L+ YQLEGLNWL+ + NG N ILADEMGLGKT+QS+
Sbjct: 212 KQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSI 258
Score = 103 (41.3 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 154 VFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG------RRKKLSRRDKERLR 206
+++ +GPFLV APLST+ NW EF + DL V+ Y+G R KL K+
Sbjct: 264 IYEMDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGG 323
Query: 207 LKYVAADY--VPKDGEVLYG-NW 226
V Y + +D +++ NW
Sbjct: 324 TGIVITSYEIILRDTDLIMSQNW 346
Score = 50 (22.7 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 446 IAPKEETVVEVELTNIQKKYYR 467
+ PK E ++ +T+ Q+K+Y+
Sbjct: 466 LPPKREYIINCPMTSAQEKFYK 487
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 193 (73.0 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 53/161 (32%), Positives = 77/161 (47%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
F V+IT+FE II D L +W IIDE HR+KN+N K +GTP
Sbjct: 723 FCVVITSFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTP 782
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEFG---QLK-------TESE----VNXXXXXX 430
LQN++ EL++LLNFL P F++ + F + F Q K E E +N
Sbjct: 783 LQNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVL 842
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
DVE + K+E V++ ++ +Q YR ++E
Sbjct: 843 RFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVE 883
Score = 183 (69.5 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 40/74 (54%), Positives = 51/74 (68%)
Query: 59 GLGKTIQSLTRNC--ILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQR 115
GL I TRN ILADEMGLGKT+Q++ F+ ++ + +R PFLV+APLSTI NW
Sbjct: 631 GLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPLSTISNWVS 690
Query: 116 EFEAWTD-LNVIVY 128
EF W+ L+VIVY
Sbjct: 691 EFARWSPKLHVIVY 704
Score = 123 (48.4 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 150 FVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGR---RKKLSRR-DKE 203
F+ ++ + +R PFLV+APLSTI NW EF W+ L+VIVY G+ R++ +R +
Sbjct: 662 FISFLYERMNVREPFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDERRETARTIPRN 721
Query: 204 RLRLKYVAADYVPKDGEVL 222
+ + +Y+ KD + L
Sbjct: 722 AFCVVITSFEYIIKDRKTL 740
Score = 109 (43.4 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
+ P L+ YQ+ GL WL+ + N ILADEMGLGKT+Q++ L + M +
Sbjct: 614 EQPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNV 672
Score = 78 (32.5 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL---SKGTTSANVP--NLMNTMME 495
DVE + K+E V++ ++ +Q YR ++E + SK S + N + +
Sbjct: 853 DVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNNIVKQ 912
Query: 496 LRKCCIHPYL 505
L+K C HPYL
Sbjct: 913 LQKICNHPYL 922
Score = 41 (19.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 190 YHGRRKK--LSRRDKERLRL 207
YH ++K + R KER+RL
Sbjct: 474 YHKEKEKREIERLSKERIRL 493
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 218 (81.8 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 59/210 (28%), Positives = 101/210 (48%)
Query: 311 NDKNQFIKEKDLY-KFHVLITTFEIIIS--DCLELKDFNWRLCIIDEAHRLKNRNCKXXX 367
+++ + KE+ ++ KF+VL+TT+E +++ D +L +W IIDE HR+KN +CK
Sbjct: 839 DERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNA 898
Query: 368 XXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ-LKTESEVNXX 426
+GTPLQNN+ EL++LLNFL P F+++E F F + ++ E +
Sbjct: 899 DLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAE 958
Query: 427 XXXXXXXXXXXXXEDVEKSIAP----------KEETVVEVE-LTNIQKKYYRGILERNFS 475
+ + + P + E ++E L + Y+ +L +
Sbjct: 959 EALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVE 1018
Query: 476 FLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
+A + N++MELR C HPYL
Sbjct: 1019 DNLGSIGNAKSRAVHNSVMELRNICNHPYL 1048
Score = 150 (57.9 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q ++ + + +T RGPFLV+ P S +P WQ E W ++ IV
Sbjct: 774 NGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIV 833
Query: 128 YHAT 131
Y T
Sbjct: 834 YCGT 837
Score = 119 (46.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
LR YQ+ GL WL+ + N N ILADEMGLGKT+Q ++ C L +
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLME 798
Score = 96 (38.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 160 RGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERL 205
RGPFLV+ P S +P WQ E W ++ IVY G + + KE++
Sbjct: 803 RGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQI 849
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 440 EDVEKSIAP-KEETVVEVELTNIQKKYYRGILERN 473
E E + P EE + +L NI+ ++E+N
Sbjct: 3175 EGTELATLPLTEEENADSQLANIEPSSSPSVVEKN 3209
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 223 (83.6 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 61/211 (28%), Positives = 97/211 (45%)
Query: 308 FFRNDKNQFIKEKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
+F K + K K K FHV IT+++ + D K W+ I+DEA +KN +
Sbjct: 638 YFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQ 697
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKT 419
+GTPLQN++ EL+SL++FL P FS+++ F F G ++
Sbjct: 698 RWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEG 757
Query: 420 ESEVNXXXXXXXXXXXX-----XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
E N ++VEK + K E +V L+ Q+ Y + R
Sbjct: 758 NMEFNAPLIGRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRS 817
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
+ + S N+ +++N +M+LRKCC HP L
Sbjct: 818 T--KENLKSGNMMSVLNIVMQLRKCCNHPNL 846
Score = 142 (55.0 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 63 TIQSLTRNCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT 121
T+ N ILADEMGLGKTIQ+++ + I GP L++ P S I NW+ EF+ W
Sbjct: 571 TLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWC 630
Query: 122 D-LNVIVYHAT 131
L ++ Y T
Sbjct: 631 PALKILTYFGT 641
Score = 111 (44.1 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 21 KSPV-YKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
K+PV + LR YQ+ GL+W++ + N ILADEMGLGKTIQ+++
Sbjct: 547 KTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTIS 595
Score = 92 (37.4 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDK 202
I GP L++ P S I NW+ EF+ W L ++ Y G K+ + + K
Sbjct: 606 IWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRK 650
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 200 (75.5 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 56/181 (30%), Positives = 91/181 (50%)
Query: 307 LFFRNDKNQF--IKEKDLYK-----FHVLITTFEIIISDCLE-LKDFNWRLCIIDEAHRL 358
+ + DKNQ ++ K + K F ++IT++E+ ++D L+ + W+ +IDE HRL
Sbjct: 279 IIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRL 338
Query: 359 KNRNCKXXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMS--EFGQ 416
KN CK +GTPLQNN++EL+SLLNF+ P F++++ F S +F +
Sbjct: 339 KNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSE 398
Query: 417 ------LKTESE------VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKK 464
K E E V+ DVE S+ K+E ++ +T+ QKK
Sbjct: 399 KNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKK 458
Query: 465 Y 465
+
Sbjct: 459 F 459
Score = 168 (64.2 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILAD+MGLGKTIQ++ F+ + G+ GP+LVIAPLST+ NW E +T +N I+Y
Sbjct: 222 NGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIY 281
Query: 129 H 129
H
Sbjct: 282 H 282
Score = 127 (49.8 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 23/37 (62%), Positives = 31/37 (83%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
L++YQL+G+ WL+ W NG N ILAD+MGLGKTIQ++
Sbjct: 202 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTI 238
Score = 120 (47.3 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLK 208
F+ + G+ GP+LVIAPLST+ NW E +T +N I+YHG + ++RD+ LR K
Sbjct: 240 FLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDK---NQRDE--LRRK 294
Query: 209 YVAADYVPK 217
++ PK
Sbjct: 295 HMPKTVGPK 303
Score = 84 (34.6 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNF-SFLSKGTTSAN--VPNLMNTMMELR 497
DVE S+ K+E ++ +T+ QKK+ ++ + L + L N +++LR
Sbjct: 435 DVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVIQLR 494
Query: 498 KCCIHPYLLNGK 509
K C HP LL G+
Sbjct: 495 KNCNHPDLLQGQ 506
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 195 (73.7 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 55/210 (26%), Positives = 98/210 (46%)
Query: 312 DKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXX 371
D+ +KD FHVL+T++++I++D + W+ I+DEA +K+ +
Sbjct: 767 DRKSLRYDKDS-PFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLN 825
Query: 372 XXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG-------QLKT---ES 421
+GTP+QN++ EL++LL+F+ P F +++ F F Q T E
Sbjct: 826 LTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQ 885
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR------GILERNFS 475
++ ++V+ + K E V +LT QKK Y+ + + +
Sbjct: 886 QLRRLHMILKPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLL 945
Query: 476 FLSKGTTSANVPNLMNTMMELRKCCIHPYL 505
L +TS++ +L N +M+ RK C HP L
Sbjct: 946 ELESNSTSSD-SSLANLVMQFRKVCNHPDL 974
Score = 143 (55.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 41/114 (35%), Positives = 65/114 (57%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+QS++ + + +T + GPFLV+ P ST+ NWQ+E + + V+
Sbjct: 692 NGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLP 751
Query: 128 Y--HATFVVLLQTGSKFF-RICLEFFVDAVFKTGIRGPFLVIAPLSTIPN--WQ 176
Y +A +L+ KF+ R L + D+ F + L++A ++ WQ
Sbjct: 752 YWGNAKDRKILR---KFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQ 802
Score = 129 (50.5 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
TL+ YQL+GLNWL + G N ILADEMGLGKT+QS++ LA+
Sbjct: 671 TLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAE 716
Score = 96 (38.9 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKY 209
GPFLV+ P ST+ NWQ+E + + V+ Y G K K+ R+ +R L+Y
Sbjct: 722 GPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRY 773
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 201 DKERL-RLKYV-AADYVPKDGEVLYGNWSRS 229
+ E+L R+ Y+ DY+PK+ ++L + S S
Sbjct: 1086 ETEKLERINYLYEGDYIPKNKKLLITDHSTS 1116
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 292 LKSASASRNMLQEYELFFRNDKNQFIKE-KDL 322
L A+A+ +E++ F R N +I KDL
Sbjct: 411 LSEAAAAGMTAKEFKAFMRQYDNTYIAIWKDL 442
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 177 (67.4 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 38/92 (41%), Positives = 50/92 (54%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E +I D L W+ IIDE HR+KN +CK +G
Sbjct: 871 KFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTG 930
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
TPLQN + EL++LLNFL P F + F F
Sbjct: 931 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWF 962
Score = 162 (62.1 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKTIQ+++ V + + + GP+L+I PLST+PNW EFE W + V+
Sbjct: 793 NGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVS 852
Query: 128 Y 128
Y
Sbjct: 853 Y 853
Score = 126 (49.4 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 19 LEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
+E++ + N TL+ YQ++GL WL+ + N N ILADEMGLGKTIQ+++ L D
Sbjct: 762 VEQASIMVN-GTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMD 817
Score = 116 (45.9 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY----HGRRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+PNW EFE W + V+ Y GRR ++ + + +
Sbjct: 821 VMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYE 880
Query: 214 YVPKDGEVL 222
YV KD VL
Sbjct: 881 YVIKDKAVL 889
Score = 85 (35.0 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSK-GTTSANVPNLMNTM 493
++VE + K E +++ +++ +Q+ Y+ G+L + S K G A LMNT+
Sbjct: 1001 KEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKA--LMNTI 1058
Query: 494 MELRKCCIHPYL 505
++LRK C HP++
Sbjct: 1059 VQLRKLCNHPFM 1070
Score = 39 (18.8 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 184 DLNVIVYHGRRKKLSRRDKERLRLKYVAADYVPKDGEVL 222
D ++I+ RR+ L +R K+++ A +DG L
Sbjct: 1409 DDSLILKRRRRQNLDKRSKKQMHKIMSAVIKHNQDGRTL 1447
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 176 (67.0 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 38/92 (41%), Positives = 50/92 (54%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 864 KFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTG 923
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
TPLQN + EL++LLNFL P F + F F
Sbjct: 924 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 955
Score = 149 (57.5 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV--FKTGIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKTIQ++ + + FK + GPFL+I PLST+ NW EF+ W
Sbjct: 786 NGILADEMGLGKTIQTIALITYLMEFKR-LNGPFLIIVPLSTLSNWVYEFDKW 837
Score = 121 (47.7 bits), Expect = 3.2e-22, Sum P(3) = 3.2e-22
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
K+EK + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 753 KVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 802
Score = 103 (41.3 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 155 FKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKY 209
FK + GPFL+I PLST+ NW EF+ W V V Y G RR L + +
Sbjct: 811 FKR-LNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFLPILRSGKFNVLV 869
Query: 210 VAADYVPKDGEVL 222
+Y+ KD +VL
Sbjct: 870 TTYEYIIKDKQVL 882
Score = 97 (39.2 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 994 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1052
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1053 QLRKICNHPYM 1063
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 228 (85.3 bits), Expect = 9.5e-25, Sum P(4) = 9.5e-25
Identities = 65/216 (30%), Positives = 101/216 (46%)
Query: 308 FFRNDKNQFIKEKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
+F + K + +K + K FHV ITT+ ++I D K W+ I+DEAH +KN +
Sbjct: 616 YFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQ 675
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF---------G 415
+GTPLQN++ EL+SL++FL P F +++ F F G
Sbjct: 676 RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEG 735
Query: 416 QLKTESEV-NXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
Q K EV + DVEK + K E V+ L+ Q+ Y +
Sbjct: 736 QEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIA--- 792
Query: 475 SFLSKGT-TSANVPNLMNTMMELRKCCIHPYLLNGK 509
S ++ T TS + +++ +M+LRK C HP L G+
Sbjct: 793 STETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGR 828
Score = 105 (42.0 bits), Expect = 9.5e-25, Sum P(4) = 9.5e-25
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
++LR YQ GL+WL+ + N ILADEMGLGKTI ++ LA + G+
Sbjct: 534 HSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGI 584
Score = 88 (36.0 bits), Expect = 9.5e-25, Sum P(4) = 9.5e-25
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG--RRKKLSRRDKERLRLKYV 210
GI GP L++ P S + NW+ EF W ++ Y G + +KL R+ +L +V
Sbjct: 583 GIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHV 638
Score = 38 (18.4 bits), Expect = 9.5e-25, Sum P(4) = 9.5e-25
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 16 WVKLEKSPVYKN 27
W+K+EK +YK+
Sbjct: 117 WMKVEKLVLYKH 128
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 306 (112.8 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 68/185 (36%), Positives = 100/185 (54%)
Query: 327 VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTPLQ 386
V +T++E++I + K FNWR +IDEAHR+KN K +GTPLQ
Sbjct: 3 VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 62
Query: 387 NNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTESEVNXXXXXXXXXXXXXXXEDVE 443
NN++EL+SLLNFL P F++ + F S F L + V DVE
Sbjct: 63 NNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDKKLVERLHMVLRPFLLRRIKADVE 122
Query: 444 KSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHP 503
KS+ PK+E + V L+ +Q+++Y IL ++ L+ + L+N +M+LRKCC HP
Sbjct: 123 KSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKM-RLLNILMQLRKCCNHP 181
Query: 504 YLLNG 508
YL +G
Sbjct: 182 YLFDG 186
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 176 (67.0 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 51/200 (25%), Positives = 95/200 (47%)
Query: 315 QFIKEKDLY----KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXX 370
QF +K L+ FHV+IT++++++SD W+ ++DEA +K+ +
Sbjct: 627 QFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLL 686
Query: 371 XXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG-------QLKT---E 420
SGTP+QN++ EL++LL+F+ P F +++ F F + KT E
Sbjct: 687 GFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDE 746
Query: 421 SEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILER----NFSF 476
+++ +DVE ++ K E +V LT QK YR + ++ +
Sbjct: 747 KQISRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLH 806
Query: 477 LSKGTTSANVPNLMNTMMEL 496
L+ G+T+ + + + +M L
Sbjct: 807 LTSGSTTTSSSSSASNLMNL 826
Score = 151 (58.2 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKT+QS+ F+ + + G+ GPFLVI+P ST+ NWQ+E + D V+ Y
Sbjct: 557 ILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPY 615
Score = 137 (53.3 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 6 KPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQ 65
KP+ +P D L + ++K TL+ YQ++G+ WL + G + ILADEMGLGKT+Q
Sbjct: 515 KPEPRPEMKD---LPQPKMFKG--TLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQ 569
Query: 66 SLTRNCILADEMGL 79
S+ C +A+ G+
Sbjct: 570 SIAFLCHIAEHYGV 583
Score = 101 (40.6 bits), Expect = 7.5e-16, Sum P(3) = 7.5e-16
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILER----NFSFLSKGTT----SANVPNLMN 491
+DVE ++ K E +V LT QK YR + ++ + L+ G+T S++ NLMN
Sbjct: 766 KDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMN 825
Query: 492 TMMELRKCCIHPYL 505
+M+ RK C HP L
Sbjct: 826 LVMQFRKVCNHPEL 839
Score = 97 (39.2 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGR--RKKLSRR--DKERLRLK 208
G+ GPFLVI+P ST+ NWQ+E + D V+ Y G +K+ R+ D++ L +
Sbjct: 582 GVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQFWDQKHLHTR 637
Score = 40 (19.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 290 DGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRL 349
DG SA R+M+ +++ R D F+ + +T + +I D +W
Sbjct: 1203 DGSSKISARRDMVADFQT--RADIFVFLLSTRAGGLGINLTAADTVI-----FYDSDWNP 1255
Query: 350 CI----IDEAHRL 358
+ +D AHRL
Sbjct: 1256 TVDQQAMDRAHRL 1268
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 218 (81.8 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 58/191 (30%), Positives = 90/191 (47%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++ +++SD L + W I+DEAH +KN + +GTP
Sbjct: 881 FHVCITSYSMVMSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTP 940
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLK-----TESEVNXXXXXXXXXX 434
LQNN+ EL+SL++FL P F ++ F F G ++ E +N
Sbjct: 941 LQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVTGMIEGGDDVNEDIINRLHAVLRPFL 1000
Query: 435 XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
+DVEK + PK +V ++ QK Y + N S +S + +++N +M
Sbjct: 1001 LRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFI--NSSSTQSTLSSGSFFSIINILM 1058
Query: 495 ELRKCCIHPYL 505
+LRK C HP L
Sbjct: 1059 QLRKVCNHPDL 1069
Score = 147 (56.8 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVD--AVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVI 126
N ILADEMGLGKTI +++ + AV K G+ GP L++ P S + NW+ EF+ W L +
Sbjct: 801 NGILADEMGLGKTIMTISLIAYLAVQK-GVWGPHLIVVPSSVLFNWEMEFKRWCPGLKIF 859
Query: 127 VYHAT 131
YH T
Sbjct: 860 TYHGT 864
Score = 106 (42.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
LR YQ GL+WL+ + N ILADEMGLGKTI +++ LA + G+
Sbjct: 781 LREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYLAVQKGV 829
Score = 100 (40.3 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 139 GSKFFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG--RRK 195
G I L ++ AV K G+ GP L++ P S + NW+ EF+ W L + YHG R +
Sbjct: 811 GKTIMTISLIAYL-AVQK-GVWGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDR 868
Query: 196 KLSRR 200
K +R+
Sbjct: 869 KANRK 873
Score = 45 (20.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 280 SFSPTMSSGT--DGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIIS 337
S T+SSG+ + R + +LF + + +LY H ++ I I
Sbjct: 1040 STQSTLSSGSFFSIINILMQLRKVCNHPDLF---EIRPIVSPLELYPIHFKTSSIVIDIL 1096
Query: 338 DCLELKDFNWRLCIID 353
D + +K+ N L +D
Sbjct: 1097 DDIPIKNLNLNLLNLD 1112
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 182 (69.1 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 50/196 (25%), Positives = 86/196 (43%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGT 383
+FHVL+T++++++ D + W+ I+DEA +K+ +GT
Sbjct: 904 EFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGT 963
Query: 384 PLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG-------QLKT---ESEVNXXXXXXXXX 433
P+QNN+ EL++LL+F+ P F +++ F F Q T E ++
Sbjct: 964 PIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPF 1023
Query: 434 XXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERN--FSFLSKGTTSANVPN--L 489
+ V++ + K E V +LT Q+ Y + R + K + L
Sbjct: 1024 MLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNLRNRVSIMDLIEKAAVGDETDSTTL 1083
Query: 490 MNTMMELRKCCIHPYL 505
MN +M+ RK C HP L
Sbjct: 1084 MNLVMQFRKVCNHPDL 1099
Score = 143 (55.4 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQS++ + + + I GPFLVIAP ST+ NWQ+E + ++ V+
Sbjct: 818 NGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLP 877
Query: 128 Y 128
Y
Sbjct: 878 Y 878
Score = 128 (50.1 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
L+ YQL+GLNWL+ + G N ILADEMGLGKTIQS++ LA+
Sbjct: 798 LKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE 842
Score = 99 (39.9 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKY 209
I GPFLVIAP ST+ NWQ+E + ++ V+ Y G K K+ R+ +R + Y
Sbjct: 846 IWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRKFWDRKHITY 899
Score = 40 (19.1 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 5 KKPKKKPPASDWVKLEKSPVYKN 27
++P + PPA L +SP Y +
Sbjct: 39 QQPPQTPPAFPQPNLARSPHYSH 61
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 210 (79.0 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 60/200 (30%), Positives = 89/200 (44%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSGT 383
F VL+TT++I + D L W+ IIDEA RLKN N +GT
Sbjct: 161 FDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGT 220
Query: 384 PLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---------LKTESEVNXXXXXXXXXX 434
P+QNN+ EL++L++F P F + F+S F + + + E
Sbjct: 221 PIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKFILGAF 280
Query: 435 XXXXXED--VEKS---IAPKEETVVEVELTNIQKKYYRGILERNF-SFLSKGTTSANVPN 488
+ +E + P E V V L ++QKK Y IL + L + +N +
Sbjct: 281 MLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTS 340
Query: 489 LMNTMMELRKCCIHPYLLNG 508
L N +++LRK C HPYL G
Sbjct: 341 LQNIVIQLRKACSHPYLFPG 360
Score = 129 (50.5 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 38/106 (35%), Positives = 58/106 (54%)
Query: 70 NCILA-DEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVI 126
N +L D+MGLGKT+Q+++F+ + F+ G+ GPFLV+ PLS W E +T +L V+
Sbjct: 71 NVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVL 130
Query: 127 VYHATFVVLLQTGSKFFRICL-EFFVDAVFKTGIRGPFLVIAPLST 171
Y G K+ R+ + + D V K+ +G FL L T
Sbjct: 131 RY---------VGDKYCRLDMRKSMYDHVKKSS-KGHFLPFDVLLT 166
Score = 100 (40.3 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILA-DEMGLGKTIQSLTRNCILADEMGL 79
TL+ +Q+EG++WL+ + G N +L D+MGLGKT+Q+++ L GL
Sbjct: 50 TLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGL 100
Score = 84 (34.6 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 155 FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYV 210
F+ G+ GPFLV+ PLS W E +T +L V+ Y G K R D + +V
Sbjct: 96 FRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVG--DKYCRLDMRKSMYDHV 150
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 177 (67.4 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 54/172 (31%), Positives = 78/172 (45%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SGT 383
F VL+TT+E II D L W I+DE HR+KN K +GT
Sbjct: 636 FQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGT 695
Query: 384 PLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF----GQLK---TESE----VNXXXX 428
PLQNN+ EL++LLNF+ P F + +E F + F GQ + TE E +
Sbjct: 696 PLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHK 755
Query: 429 XXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKG 480
+DVEK + K+E V++ + +Q K + + N +S G
Sbjct: 756 VLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQLATHNKMVVSDG 807
Score = 158 (60.7 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + + GPFLVI PLST+ NW EFE W ++ IV
Sbjct: 557 NGILADEMGLGKTIQTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIV 616
Query: 128 Y 128
Y
Sbjct: 617 Y 617
Score = 144 (55.7 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 44/141 (31%), Positives = 69/141 (48%)
Query: 381 SGTPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF----GQLK---TESE----VNX 425
+GTPLQNN+ EL++LLNF+ P F + +E F + F GQ + TE E +
Sbjct: 693 TGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRR 752
Query: 426 XXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTS-A 484
+DVEK + K+E V++ + +Q K + + N +S G
Sbjct: 753 LHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQLATHNKMVVSDGKGGKV 812
Query: 485 NVPNLMNTMMELRKCCIHPYL 505
+ L N +M+LRK C HP++
Sbjct: 813 GMRGLSNMLMQLRKLCNHPFV 833
Score = 119 (46.9 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
++ + P TL+ YQ++GL W++ + N N ILADEMGLGKTIQ+++
Sbjct: 524 EITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTIS 574
Score = 108 (43.1 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKLSRRDK-ERLRLKYVAADYV 215
GPFLVI PLST+ NW EFE W ++ IVY G RK+ + + ++ +Y+
Sbjct: 587 GPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYI 646
Query: 216 PKDGEVL 222
KD +L
Sbjct: 647 IKDRPIL 653
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 197 (74.4 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 56/194 (28%), Positives = 89/194 (45%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHVLIT++ +I+ D W+ ++DEAH +K+ +GTP
Sbjct: 1268 FHVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTP 1327
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ-LKT---------ESEVNXXXXXXXXXX 434
+QN++ EL++LL+F+ P F +++ F F + ++ E ++N
Sbjct: 1328 IQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFM 1387
Query: 435 XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF--LSKGTT---SANVPNL 489
DVE + K E V LT+ QKK Y+ I N S L G + ++ L
Sbjct: 1388 LRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSI-RSNISITELLGGASFSEQGSMKAL 1446
Query: 490 MNTMMELRKCCIHP 503
MN +M+ RK C HP
Sbjct: 1447 MNFVMQFRKVCNHP 1460
Score = 136 (52.9 bits), Expect = 7.4e-20, Sum P(3) = 7.4e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKTIQS+ + + + I GPFL++ P ST+ NW+ EF + VI
Sbjct: 1182 NGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPKSTLHNWKNEFAKFVPAFKVIP 1241
Query: 128 YHAT 131
Y T
Sbjct: 1242 YWGT 1245
Score = 130 (50.8 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 11 PPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRN 70
PP K P N + L+ YQL+G+ W++ + G N ILADEMGLGKTIQS+
Sbjct: 1143 PPGFSTADTLKQPTILNAD-LKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVL 1201
Query: 71 CILADEMGL 79
LA+E +
Sbjct: 1202 AHLAEEKNI 1210
Score = 81 (33.6 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKK 196
I GPFL++ P ST+ NW+ EF + VI Y G +++
Sbjct: 1210 IWGPFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQ 1248
Score = 40 (19.1 bits), Expect = 7.4e-20, Sum P(3) = 7.4e-20
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 17 VKLEKSPVYKNDNTLRAYQLE---GLNWLMF 44
+K +K P DN +RA +L G W F
Sbjct: 928 IKNQKPPKATKDNQIRAKKLVKEMGAYWRKF 958
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 176 (67.0 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 829 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 888
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 889 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 948
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 949 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 986
Score = 148 (57.2 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 751 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 810
Query: 128 YHAT 131
Y T
Sbjct: 811 YKGT 814
Score = 126 (49.4 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 718 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 767
Score = 101 (40.6 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 779 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 838
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 839 YIIKDKHIL 847
Score = 101 (40.6 bits), Expect = 3.5e-15, Sum P(3) = 3.5e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 959 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 1017
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1018 QLRKICNHPYM 1028
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 181 (68.8 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 52/158 (32%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VLITT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 824 KFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 883
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 884 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 943
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ IQK YR
Sbjct: 944 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYR 981
Score = 141 (54.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW E + W V I
Sbjct: 746 NGILADEMGLGKTIQTIGLITYLMELKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIA 805
Query: 128 YHAT 131
Y T
Sbjct: 806 YKGT 809
Score = 126 (49.4 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + + TL+ YQ++GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 713 RVDKQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 762
Score = 101 (40.6 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ IQK YR GIL + S K LMNT+M
Sbjct: 954 KEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDK-KGKGGAKTLMNTIM 1012
Query: 495 ELRKCCIHPYL 505
+L+K C HPY+
Sbjct: 1013 QLKKICNHPYM 1023
Score = 96 (38.9 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW E + W V I Y G RR + + + + +
Sbjct: 774 LNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQLRSGKFNVLITTYE 833
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 834 YIIKDKHIL 842
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 172 (65.6 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 49/158 (31%), Positives = 72/158 (45%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+ L+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 829 KFNALLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 888
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 889 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 948
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 949 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 986
Score = 150 (57.9 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMG GKTIQ++ + + + G+ GP+L+I PLST+ NW EF+ W V I
Sbjct: 751 NGILADEMGPGKTIQTIALITYLMEHKGLNGPYLIIVPLSTLSNWTYEFDKWAPSAVKIS 810
Query: 128 YHAT 131
Y T
Sbjct: 811 YKGT 814
Score = 126 (49.4 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEM 77
++EK + TL+ YQL+GL W++ + N N ILADEMG GKTIQ++ L +
Sbjct: 718 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHK 777
Query: 78 GL 79
GL
Sbjct: 778 GL 779
Score = 106 (42.4 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAA 212
G+ GP+L+I PLST+ NW EF+ W V I Y G RR + + +
Sbjct: 778 GLNGPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRSGKFNALLTTY 837
Query: 213 DYVPKDGEVL 222
+Y+ KD +L
Sbjct: 838 EYIIKDKHIL 847
Score = 101 (40.6 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 959 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 1017
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1018 QLRKICNHPYM 1028
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 176 (67.0 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 804 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 863
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 864 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 923
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 924 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 961
Score = 148 (57.2 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 726 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 785
Query: 128 YHAT 131
Y T
Sbjct: 786 YKGT 789
Score = 126 (49.4 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 693 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 742
Score = 101 (40.6 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 754 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 813
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 814 YIIKDKHIL 822
Score = 101 (40.6 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 934 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 992
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 993 QLRKICNHPYM 1003
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 176 (67.0 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 806 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 865
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 866 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 925
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 926 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 963
Score = 148 (57.2 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 728 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 787
Query: 128 YHAT 131
Y T
Sbjct: 788 YKGT 791
Score = 126 (49.4 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 695 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 744
Score = 101 (40.6 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 756 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 815
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 816 YIIKDKHIL 824
Score = 101 (40.6 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 936 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 994
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 995 QLRKICNHPYM 1005
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 176 (67.0 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 806 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 865
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 866 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 925
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 926 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 963
Score = 148 (57.2 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 728 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 787
Query: 128 YHAT 131
Y T
Sbjct: 788 YKGT 791
Score = 126 (49.4 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 695 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 744
Score = 101 (40.6 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 756 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 815
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 816 YIIKDKHIL 824
Score = 101 (40.6 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 936 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 994
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 995 QLRKICNHPYM 1005
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 176 (67.0 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 806 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 865
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 866 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 925
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 926 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 963
Score = 148 (57.2 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 728 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 787
Query: 128 YHAT 131
Y T
Sbjct: 788 YKGT 791
Score = 126 (49.4 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 695 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 744
Score = 101 (40.6 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 756 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 815
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 816 YIIKDKHIL 824
Score = 101 (40.6 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 936 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 994
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 995 QLRKICNHPYM 1005
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 176 (67.0 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 827 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 886
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 887 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 946
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 947 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 984
Score = 148 (57.2 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 749 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 808
Query: 128 YHAT 131
Y T
Sbjct: 809 YKGT 812
Score = 126 (49.4 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 716 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 765
Score = 101 (40.6 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 777 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 836
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 837 YIIKDKHIL 845
Score = 101 (40.6 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 957 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 1015
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1016 QLRKICNHPYM 1026
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 176 (67.0 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 822 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 882 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 942 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 979
Score = 148 (57.2 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 744 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 803
Query: 128 YHAT 131
Y T
Sbjct: 804 YKGT 807
Score = 126 (49.4 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 711 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 760
Score = 101 (40.6 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 772 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 831
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 832 YIIKDKHIL 840
Score = 101 (40.6 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 952 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 1010
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1011 QLRKICNHPYM 1021
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 176 (67.0 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 829 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 888
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 889 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 948
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 949 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 986
Score = 148 (57.2 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 751 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 810
Query: 128 YHAT 131
Y T
Sbjct: 811 YKGT 814
Score = 126 (49.4 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 718 RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 767
Score = 101 (40.6 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 779 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 838
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 839 YIIKDKHIL 847
Score = 101 (40.6 bits), Expect = 4.3e-15, Sum P(3) = 4.3e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 959 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 1017
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1018 QLRKICNHPYM 1028
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 176 (67.0 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 50/158 (31%), Positives = 73/158 (46%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX-XXXXXSG 382
KF+VL+TT+E II D L W+ I+DE HR+KN +CK +G
Sbjct: 796 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 855
Query: 383 TPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF-------GQ---LKTESEV---NXXXXX 429
TPLQN + EL++LLNFL P F + F F G+ L E +
Sbjct: 856 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 915
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYR 467
++VE + K E V++ +++ +QK YR
Sbjct: 916 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 953
Score = 148 (57.2 bits), Expect = 8.6e-20, Sum P(2) = 8.6e-20
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ++ + + + + GP+L+I PLST+ NW EF+ W V I
Sbjct: 718 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 777
Query: 128 YHAT 131
Y T
Sbjct: 778 YKGT 781
Score = 124 (48.7 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
++EK + TL+ YQL+GL W++ + N N ILADEMGLGKTIQ++
Sbjct: 685 RVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 734
Score = 101 (40.6 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHG----RRKKLSRRDKERLRLKYVAAD 213
+ GP+L+I PLST+ NW EF+ W V I Y G RR + + + + +
Sbjct: 746 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE 805
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 806 YIIKDKHIL 814
Score = 101 (40.6 bits), Expect = 6.3e-15, Sum P(3) = 6.3e-15
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +QK YR GIL + S K LMNT+M
Sbjct: 926 KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDK-KGKGGAKTLMNTIM 984
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 985 QLRKICNHPYM 995
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 186 (70.5 bits), Expect = 5.9e-23, Sum P(3) = 5.9e-23
Identities = 52/196 (26%), Positives = 88/196 (44%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV++T++++++ D + W+ I+DEA +K+ + +GTP
Sbjct: 949 FHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTP 1008
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEFG-------QLKT---ESEVNXXXXXXXXXX 434
+QN + EL++LL+F+ P F ++ F F Q T E ++
Sbjct: 1009 IQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFM 1068
Query: 435 XXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSF---LSKGTTSAN--VPNL 489
++V+ + K E V +LT QK Y+ L R S L K + V ++
Sbjct: 1069 LRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQA-LRRQISIAELLEKAILGGDDTVASI 1127
Query: 490 MNTMMELRKCCIHPYL 505
MN +M+ RK C HP L
Sbjct: 1128 MNLVMQFRKVCNHPDL 1143
Score = 144 (55.7 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKT+QS++ + + +T I GPFLVIAP ST+ NWQ+E + L I
Sbjct: 862 NGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHNWQQEITRFVPKLKCIP 921
Query: 128 Y 128
Y
Sbjct: 922 Y 922
Score = 125 (49.1 bits), Expect = 5.9e-23, Sum P(3) = 5.9e-23
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
L+ YQL+GLNWL + G N ILADEMGLGKT+QS++ LA+
Sbjct: 842 LKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAE 886
Score = 89 (36.4 bits), Expect = 5.9e-23, Sum P(3) = 5.9e-23
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRK--KLSRRDKERLRLKY 209
I GPFLVIAP ST+ NWQ+E + L I Y G K K+ R+ R + Y
Sbjct: 890 IWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTY 943
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 279 KSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIII 336
++ SP M+ D S + R + +L + ++Q + +K + TT ++
Sbjct: 243 ENISPVMAPSIDARLSQTILRGLPPAQKLSPNSSQSQITHNRRKHKLPLNATTNNSVV 300
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 240 (89.5 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 65/201 (32%), Positives = 105/201 (52%)
Query: 309 FRNDKNQ---FIKEKDLY-KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
F DK+ FI+++ + ++ V +T++E++I + K F+WR +IDEAHR+KN K
Sbjct: 55 FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 114
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQNN++EL++LLNFL P F++ + F S F L +
Sbjct: 115 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 174
Query: 422 EVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT 481
V DVEKS+ PK+E V + L+ +Q++++ IL S S +
Sbjct: 175 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFV-ILAFFISENSNNS 233
Query: 482 TSANVPNLMNTMMELR--KCC 500
+ +++N +M LR KCC
Sbjct: 234 NKNHKLDILNVIMLLREAKCC 254
Score = 101 (40.6 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 78 GLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
GLGKT+Q++ + + I GP +V+ P ST+ NW EF+ W L VI +
Sbjct: 3 GLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICF 55
Score = 82 (33.9 bits), Expect = 9.1e-21, Sum P(2) = 9.1e-21
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
I GP +V+ P ST+ NW EF+ W L VI + G
Sbjct: 23 IPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVG 57
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 151 (58.2 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 34/93 (36%), Positives = 46/93 (49%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D K W I+DEAH +KN +GTP
Sbjct: 923 FHVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTP 982
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQL 417
LQNN+ EL+SLL FL P N+A F L
Sbjct: 983 LQNNLMELWSLLYFLMPSS-KVNQAMPEGFANL 1014
Score = 129 (50.5 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADE 76
TLR YQ +GLNWL + N N ILADEMGLGKTIQ+++ LA E
Sbjct: 822 TLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACE 868
Score = 117 (46.2 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIR-GPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKTIQ+++ + + + GP L+I P S + NW+ EF+ + V+
Sbjct: 843 NGILADEMGLGKTIQTISLLAYLACEHHKWGPHLIIVPTSVMLNWEMEFKKFAPGFKVLT 902
Query: 128 YHAT 131
Y+ +
Sbjct: 903 YYGS 906
Score = 88 (36.0 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKC 499
+DVEK + K E +V L+ Q+ Y + R + + S N +++N +M+LRK
Sbjct: 1075 KDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSR--AKTKETLASGNFLSIINCLMQLRKV 1132
Query: 500 CIHPYL 505
C HP L
Sbjct: 1133 CNHPDL 1138
Score = 76 (31.8 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDK 202
GP L+I P S + NW+ EF+ + V+ Y+G ++ +++ K
Sbjct: 873 GPHLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 915
Score = 45 (20.9 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 246 WKEFLANNEFRNGWTEE 262
++EF+ NN++R W +E
Sbjct: 102 FEEFVKNNDYRLVWDKE 118
Score = 45 (20.9 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 290 DGLKSASAS-RNMLQEYELFFRNDKNQFIKEKDL 322
D ++++SA+ R + E+E F +N+ + + +K++
Sbjct: 86 DPIENSSANDRGIKAEFEEFVKNNDYRLVWDKEI 119
Score = 41 (19.5 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 175 WQREFEAWTDLNVIVYHGRRKKLSRRDK 202
W +E E ++++ + ++KKL+ ++K
Sbjct: 115 WDKEIENNSNIDSLPLRFQKKKLAEQNK 142
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 175 (66.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 174 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 233
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 234 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 276
Score = 152 (58.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 107 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 166
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 167 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 213
Score = 119 (46.9 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 74 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 123
Score = 103 (41.3 bits), Expect = 7.8e-15, Sum P(3) = 7.8e-15
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 135 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 194
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 195 YIIKDKHIL 203
Score = 97 (39.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 315 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 373
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 374 QLRKICNHPYM 384
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 177 (67.4 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 53/158 (33%), Positives = 75/158 (47%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SGT 383
F VL+TT+E II D L W IIDE HR+KN K +GT
Sbjct: 516 FQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGT 575
Query: 384 PLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF----GQLK---TESE----VNXXXX 428
PLQNN+ EL++LLNF+ P+ F++ +E F + F GQ K TE E +
Sbjct: 576 PLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHK 635
Query: 429 XXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYY 466
+DVE + K E V+ +++ +Q+K Y
Sbjct: 636 VLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLY 673
Score = 158 (60.7 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 35/61 (57%), Positives = 41/61 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVF-KTGIRGPFLVIAPLSTIPNWQREFEAWTDLNV-IV 127
N ILADEMGLGKTIQ+++ + + K GPFLVI PLST+ NW EFE W V IV
Sbjct: 437 NGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIV 496
Query: 128 Y 128
Y
Sbjct: 497 Y 497
Score = 148 (57.2 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 42/141 (29%), Positives = 71/141 (50%)
Query: 381 SGTPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF----GQLK---TESE----VNX 425
+GTPLQNN+ EL++LLNF+ P+ F++ +E F + F GQ K TE E +
Sbjct: 573 TGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRR 632
Query: 426 XXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTS-A 484
+DVE + K E V+ +++ +Q+K Y + + ++
Sbjct: 633 LHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKT 692
Query: 485 NVPNLMNTMMELRKCCIHPYL 505
+ L NT+M+L+K C HP++
Sbjct: 693 GIKGLQNTVMQLKKICNHPFV 713
Score = 112 (44.5 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
L+ YQL GL W++ + N N ILADEMGLGKTIQ+++
Sbjct: 417 LKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTIS 454
Score = 107 (42.7 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTDLNV-IVYHGR---RKKLSRRDKE-RLRLKYVAADYV 215
GPFLVI PLST+ NW EFE W V IVY G RK L + + ++ +Y+
Sbjct: 467 GPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYI 526
Query: 216 PKDGEVL 222
KD +L
Sbjct: 527 IKDRPLL 533
Score = 44 (20.5 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 294 SASASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRL 349
SA R LQ Y++ ++ IK + +++ + ++ ++ D ELKD N RL
Sbjct: 139 SAKQQRKYLQ-YQI----SEDDAIKNR-MFRRMSDLESYPAVMRDVAELKDDNERL 188
Score = 39 (18.8 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 16 WVKLEKSPVYKNDNT 30
W KL++S ++DNT
Sbjct: 19 WKKLKESGATEHDNT 33
Score = 37 (18.1 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 297 ASRNMLQEYELFFRNDKNQFIKEKDLYK 324
A RN Q + ND+ ++K D K
Sbjct: 315 AERNAKQRLQALKENDEEAYLKLIDQAK 342
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 181 (68.8 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 59/201 (29%), Positives = 90/201 (44%)
Query: 322 LYKFHVLITTFEIIIS---DCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXX 378
L F+++++T+ + I D + + + DE H LKN N
Sbjct: 545 LIDFNIIVSTYNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRL 604
Query: 379 XXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSE-FGQLKTESEVNXXXXXXXXXXXXX 437
+GTPLQNN+ EL SLLNF+ P FS++ + +S+ F +E E +
Sbjct: 605 LLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQISKMFSTRSSEEESSFHKDRIAQARLIM 664
Query: 438 X-------XEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLM 490
+V K + PK E + +++ Q K Y IL F L K T + + L
Sbjct: 665 KPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLY-DIL---FKRLKK-TPNGDKRELC 719
Query: 491 NTMMELRKCCIHPYLLNGKTY 511
N MM+LRK HP LL+ + Y
Sbjct: 720 NVMMQLRKMANHP-LLHRQYY 739
Score = 164 (62.8 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHA 130
ILADEMGLGKTIQ++ F+ +++ GI+GP L+ P ST+ NW RE W L V++Y+
Sbjct: 470 ILADEMGLGKTIQAIAFLAHLYEKGIKGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYG 529
Query: 131 T 131
+
Sbjct: 530 S 530
Score = 112 (44.5 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 35/88 (39%), Positives = 48/88 (54%)
Query: 21 KSPVYKNDNT-LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
K P N N L+AYQL GL WL+ + + ILADEMGLGKTIQ++ L ++
Sbjct: 437 KQPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYEKGIK 496
Query: 80 GK---TIQSLTFVDAVFKTGIRGPFLVI 104
G T+ S T + V + G+ P L +
Sbjct: 497 GPHLITVPSSTLDNWVRELGLWCPSLKV 524
Score = 106 (42.4 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--RRKKLSRRD 201
F+ +++ GI+GP L+ P ST+ NW RE W L V++Y+G +K R+D
Sbjct: 486 FLAHLYEKGIKGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVEDRKYLRQD 540
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 175 (66.7 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 93 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 152
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 153 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 195
Score = 152 (58.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 26 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 85
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 86 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 132
Score = 115 (45.5 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 28 DNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+ L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 3 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 42
Score = 103 (41.3 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 54 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 113
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 114 YIIKDKHIL 122
Score = 97 (39.2 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 234 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 292
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 293 QLRKICNHPYM 303
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 147 (56.8 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 37/116 (31%), Positives = 57/116 (49%)
Query: 310 RNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXX 369
R +K + + D FHV I ++++++ D K W+ ++DEAH +KN
Sbjct: 783 RKEKRKGWNKPDA--FHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQAL 840
Query: 370 XXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQ---------FSNNEAFMSEFGQ 416
+GTPLQNN+ EL+SLL FL PQ F++ +AF FG+
Sbjct: 841 LNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGR 896
Score = 123 (48.4 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADE 76
LR YQ +GLNWL + N N ILADEMGLGKTIQ+++ LA E
Sbjct: 696 LRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACE 741
Score = 117 (46.2 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 70 NCILADEMGLGKTIQSLTFVD--AVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVI 126
N ILADEMGLGKTIQ+++ + A K GP L++ P S + NW+ EF+ + V+
Sbjct: 716 NGILADEMGLGKTIQTISLLAYLACEKENW-GPHLIVVPTSVLLNWEMEFKRFAPGFKVL 774
Query: 127 VYHAT 131
Y+ +
Sbjct: 775 TYYGS 779
Score = 93 (37.8 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGT-TSANVPNLMNTMMELRKC 499
DVEK + K E +V +L+ Q+ Y + R +K T S N +++N +M+LRK
Sbjct: 936 DVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRA---QTKATLASGNFMSIVNCLMQLRKV 992
Query: 500 CIHPYLLNGKTYL 512
C HP L + L
Sbjct: 993 CNHPNLFEVRPIL 1005
Score = 76 (31.8 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKER 204
GP L++ P S + NW+ EF+ + V+ Y+G ++ R++K +
Sbjct: 746 GPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQ--RKEKRK 788
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 175 (66.7 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 640 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 699
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 700 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 742
Score = 152 (58.6 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 573 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 632
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 633 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 679
Score = 119 (46.9 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 540 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 589
Score = 103 (41.3 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 601 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 660
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 661 YIIKDKHIL 669
Score = 97 (39.2 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 781 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 839
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 840 QLRKICNHPYM 850
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 287 (106.1 bits), Expect = 3.5e-22, P = 3.5e-22
Identities = 67/197 (34%), Positives = 102/197 (51%)
Query: 315 QFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXX 374
Q +KE+ F VL+TT+EI + D LK F+W ++DEAHRLKN+N
Sbjct: 138 QNLKEQS--HFRVLLTTYEICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPV 195
Query: 375 XXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEA--FMSEFGQLKTESE-VNXXXXXXX 431
+GTP+QN++ EL+SLL+F+EP F + F+ + ++ ESE
Sbjct: 196 GFSLLLTGTPIQNSLQELYSLLSFIEPDIFPRKQVKEFVEYYQAVEKESEPAKELHNLLQ 255
Query: 432 XXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMN 491
+V + K E V+ ++ +Q+KYY+ IL ++ +G T V L N
Sbjct: 256 PFLLRRVKSEVTADLPKKVEVVLYHGMSALQRKYYKAILTKDLDAF-EGGTGRKVM-LQN 313
Query: 492 TMMELRKCCIHPYLLNG 508
+++LRKC HPYL NG
Sbjct: 314 VLIQLRKCVAHPYLFNG 330
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 175 (66.7 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 833 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 892
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 893 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 935
Score = 152 (58.6 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 766 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 825
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 826 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 872
Score = 119 (46.9 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 733 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 782
Score = 103 (41.3 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 853
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 854 YIIKDKHIL 862
Score = 97 (39.2 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 974 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1032
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1033 QLRKICNHPYM 1043
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 175 (66.7 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 833 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 892
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 893 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 935
Score = 152 (58.6 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 766 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 825
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 826 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 872
Score = 119 (46.9 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 733 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 782
Score = 103 (41.3 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 794 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 853
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 854 YIIKDKHIL 862
Score = 97 (39.2 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 974 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1032
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1033 QLRKICNHPYM 1043
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 175 (66.7 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 175 (66.7 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 175 (66.7 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 175 (66.7 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 6.4e-22, Sum P(3) = 6.4e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 172 (65.6 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 55/170 (32%), Positives = 83/170 (48%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SG 382
+F V++TTFE II + L W IIDE HR+KN K +G
Sbjct: 865 EFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTG 924
Query: 383 TPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF----GQLKTE-SE------VNXXX 427
TPLQNN+ EL++LLNF+ P+ F++ +E F + F GQ K E SE +
Sbjct: 925 TPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLH 984
Query: 428 XXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+DVEK + K E VV+ +++ +Q+ Y+ +L+ F+
Sbjct: 985 KVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFI 1034
Score = 157 (60.3 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAW 120
N ILADEMGLGKTIQ+++ + +++ IRGP+LVI PLST+ NW EF W
Sbjct: 787 NGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKW 838
Score = 121 (47.7 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 19 LEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGR-NCILADEMGLGKTIQSLT 68
++K P TL+ YQ++GL W M S FN N ILADEMGLGKTIQ+++
Sbjct: 755 IKKQPSILVGGTLKDYQIKGLQW-MVSLFNNHLNGILADEMGLGKTIQTIS 804
Score = 99 (39.9 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG----RRKKLSRRDKERLRLKYVAAD 213
IRGP+LVI PLST+ NW EF W L I + G R+ K ++ + +
Sbjct: 815 IRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFE 874
Query: 214 YVPKDGEVL 222
Y+ K+ +L
Sbjct: 875 YIIKERALL 883
Score = 86 (35.3 bits), Expect = 9.8e-13, Sum P(3) = 9.8e-13
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVP--NLMNTMMELR 497
+DVEK + K E VV+ +++ +Q+ Y+ +L+ F+ V N +M+L+
Sbjct: 997 KDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLK 1056
Query: 498 KCCIHPYL 505
K C HP++
Sbjct: 1057 KICNHPFV 1064
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 175 (66.7 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 212 (79.7 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 53/195 (27%), Positives = 92/195 (47%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D + W+ I+DEA +KN + +GTP
Sbjct: 1014 FHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTP 1073
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKTESEVNXXXXXXXXXXXX--- 436
LQN++ EL+SL++FL P FS++ F F G ++ E N
Sbjct: 1074 LQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPFL 1133
Query: 437 --XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
++VEK + K E V+ L+N Q+ Y + R + + + N+ +++N +M
Sbjct: 1134 LRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSR--AKTRETLQTGNLLSVINVLM 1191
Query: 495 ELRKCCIHPYLLNGK 509
+LRK C HP + +
Sbjct: 1192 QLRKVCNHPNMFEAR 1206
Score = 129 (50.5 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 63 TIQSLTRNCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT 121
T+ N ILADEMGLGKTIQ++ + G GP L++ P S + NW+ EF+ W
Sbjct: 927 TMNERKLNGILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWC 986
Query: 122 D-LNVIVYHAT 131
++ Y+ +
Sbjct: 987 PGFKILTYYGS 997
Score = 99 (39.9 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 29 NTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
++LR YQ GL+WL+ N ILADEMGLGKTIQ++ LA G
Sbjct: 912 HSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKG 961
Score = 86 (35.3 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRK--KLSR 199
GP L++ P S + NW+ EF+ W ++ Y+G +K KL R
Sbjct: 964 GPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKR 1005
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 175 (66.7 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 169 (64.5 bits), Expect = 7.0e-22, Sum P(3) = 7.0e-22
Identities = 53/169 (31%), Positives = 79/169 (46%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX-SGT 383
F VL+TT+E +I + L F++ IIDE HR+KN K +GT
Sbjct: 599 FQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGT 658
Query: 384 PLQNNVNELFSLLNFLEPQQFSN--------NEAFMSEFGQLK---TESE----VNXXXX 428
PLQNN+ EL++LLNF+ P F++ N F + Q K TE E +
Sbjct: 659 PLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHK 718
Query: 429 XXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL 477
+DVEK + K E V++ L+ +Q Y+ +L+ N F+
Sbjct: 719 VLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFV 767
Score = 161 (61.7 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 34/60 (56%), Positives = 40/60 (66%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKTIQS++ V + + FL+I PLSTI NW EFE W + VIVY
Sbjct: 521 NGILADEMGLGKTIQSISLVTYLIEKKHENKFLIIVPLSTITNWTLEFEKWAPSIKVIVY 580
Score = 120 (47.3 bits), Expect = 7.0e-22, Sum P(3) = 7.0e-22
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
K+ + P L+ YQ++GL W++ + N N ILADEMGLGKTIQS++
Sbjct: 488 KITEQPTILVGGKLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSIS 538
Score = 109 (43.4 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSK--GTTSANVPNLMNTMMELR 497
+DVEK + K E V++ L+ +Q Y+ +L+ N F+ G + + L N +M+LR
Sbjct: 730 KDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLR 789
Query: 498 KCCIHPYL 505
K C HP++
Sbjct: 790 KICNHPFV 797
Score = 99 (39.9 bits), Expect = 7.0e-22, Sum P(3) = 7.0e-22
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 163 FLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
FL+I PLSTI NW EFE W + VIVY G +++
Sbjct: 552 FLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQ 586
Score = 39 (18.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 82 TIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD 122
TI+S F + +F+ + G L+ +Q+EF +D
Sbjct: 123 TIKSEGFDNELFEKQVAGLLLLSRDYDLPEKFQKEFTTISD 163
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 289 TDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFH 326
T+ +S R Q + ND+ ++K D K H
Sbjct: 381 TEKEESKKLERTAKQRLQALRSNDEEAYLKLLDKTKDH 418
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 175 (66.7 bits), Expect = 7.4e-22, Sum P(3) = 7.4e-22
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 313 KNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXX 372
+ F+ + KF+VL+TT+E II D L W+ I+DE HR+KN +CK
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 373 XXX-XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF 414
+GTPLQN + EL++LLNFL P F + F F
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 943
Score = 152 (58.6 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 42/109 (38%), Positives = 60/109 (55%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIV- 127
N ILADEMGLGKTIQ++ + + + I GPFL+I PLST+ NW EF+ W V V
Sbjct: 774 NGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVS 833
Query: 128 YHAT------FVVLLQTGSKFFRICL---EFFV-DAVFKTGIRGPFLVI 166
Y + FV L++G F + L E+ + D IR ++++
Sbjct: 834 YKGSPAARRAFVPQLRSGK--FNVLLTTYEYIIKDKHILAKIRWKYMIV 880
Score = 119 (46.9 bits), Expect = 7.4e-22, Sum P(3) = 7.4e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
+++K + L+ YQ++GL WL+ + N N ILADEMGLGKTIQ++
Sbjct: 741 RVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 790
Score = 103 (41.3 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWTDLNVIV-YHG----RRKKLSRRDKERLRLKYVAAD 213
I GPFL+I PLST+ NW EF+ W V V Y G RR + + + + +
Sbjct: 802 INGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYE 861
Query: 214 YVPKDGEVL 222
Y+ KD +L
Sbjct: 862 YIIKDKHIL 870
Score = 97 (39.2 bits), Expect = 7.4e-22, Sum P(3) = 7.4e-22
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYR-----GILERNFSFLSKGTTSANVPNLMNTMM 494
++VE + K E V++ +++ +Q+ YR G+L + S K LMNT+M
Sbjct: 982 KEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK-KGKGGTKTLMNTIM 1040
Query: 495 ELRKCCIHPYL 505
+LRK C HPY+
Sbjct: 1041 QLRKICNHPYM 1051
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 182 (69.1 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 61/201 (30%), Positives = 95/201 (47%)
Query: 306 ELFFRNDKNQF-IKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRN 362
++ ++ NQ + + D+ F +++TTFE +I D L W IIDE HR+KN N
Sbjct: 858 KITYKGTPNQRKVMQHDIRTGNFQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNAN 917
Query: 363 CKXXXXXXXXXXXXXXXX-SGTPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF--- 414
K +GTPLQNN+ EL++LLNF+ P+ F++ +E F + F
Sbjct: 918 SKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANT 977
Query: 415 -GQLK---TESE----VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYY 466
GQ K TE E + +DVEK + K E VV+ + + +Q K Y
Sbjct: 978 GGQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLY 1037
Query: 467 RGILERNFSFLSKGTTSANVP 487
+ +L N + + +VP
Sbjct: 1038 QQMLRYNMLYAGD-PANGSVP 1057
Score = 160 (61.4 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + + I GPFLVI PLST+ NW EFE W + I
Sbjct: 801 NGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKIT 860
Query: 128 YHAT 131
Y T
Sbjct: 861 YKGT 864
Score = 122 (48.0 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGR-NCILADEMGLGKTIQSLT 68
++ K P TL+ YQL+GL W M S FN N ILADEMGLGKTIQ+++
Sbjct: 768 EVTKQPSILVGGTLKEYQLKGLQW-MVSLFNNHLNGILADEMGLGKTIQTIS 818
Score = 115 (45.5 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--RRKKLSRRDKE--RLRLKYVAAD 213
I GPFLVI PLST+ NW EFE W + I Y G ++K+ + D +L +
Sbjct: 829 IPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTFE 888
Query: 214 YVPKDGEVL 222
YV KD +L
Sbjct: 889 YVIKDKGLL 897
Score = 106 (42.4 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL---SKGTTSANVPNLMNTMMEL 496
+DVEK + K E VV+ + + +Q K Y+ +L N + + G+ + N N +M+L
Sbjct: 1011 KDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQL 1070
Query: 497 RKCCIHPYL 505
+K C HP++
Sbjct: 1071 KKICNHPFV 1079
Score = 41 (19.5 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 310 RNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRL 349
+N NQ ++ K + + E +I+ +E D WR+
Sbjct: 1061 KNANNQIMQLKKICNHPFVYEEVENLINPNIETNDQIWRV 1100
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 293 KSASASRNMLQEYELFFRNDK 313
KS S R L++ L F N K
Sbjct: 1571 KSYSKIREFLEDIHLMFTNAK 1591
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 182 (69.1 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 61/201 (30%), Positives = 95/201 (47%)
Query: 306 ELFFRNDKNQF-IKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRN 362
++ ++ NQ + + D+ F +++TTFE +I D L W IIDE HR+KN N
Sbjct: 858 KITYKGTPNQRKVMQHDIRTGNFQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNAN 917
Query: 363 CKXXXXXXXXXXXXXXXX-SGTPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEF--- 414
K +GTPLQNN+ EL++LLNF+ P+ F++ +E F + F
Sbjct: 918 SKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANT 977
Query: 415 -GQLK---TESE----VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYY 466
GQ K TE E + +DVEK + K E VV+ + + +Q K Y
Sbjct: 978 GGQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLY 1037
Query: 467 RGILERNFSFLSKGTTSANVP 487
+ +L N + + +VP
Sbjct: 1038 QQMLRYNMLYAGD-PANGSVP 1057
Score = 160 (61.4 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTG-IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + + I GPFLVI PLST+ NW EFE W + I
Sbjct: 801 NGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKIT 860
Query: 128 YHAT 131
Y T
Sbjct: 861 YKGT 864
Score = 122 (48.0 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGR-NCILADEMGLGKTIQSLT 68
++ K P TL+ YQL+GL W M S FN N ILADEMGLGKTIQ+++
Sbjct: 768 EVTKQPSILVGGTLKEYQLKGLQW-MVSLFNNHLNGILADEMGLGKTIQTIS 818
Score = 115 (45.5 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 159 IRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG--RRKKLSRRDKE--RLRLKYVAAD 213
I GPFLVI PLST+ NW EFE W + I Y G ++K+ + D +L +
Sbjct: 829 IPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTFE 888
Query: 214 YVPKDGEVL 222
YV KD +L
Sbjct: 889 YVIKDKGLL 897
Score = 106 (42.4 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFL---SKGTTSANVPNLMNTMMEL 496
+DVEK + K E VV+ + + +Q K Y+ +L N + + G+ + N N +M+L
Sbjct: 1011 KDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQL 1070
Query: 497 RKCCIHPYL 505
+K C HP++
Sbjct: 1071 KKICNHPFV 1079
Score = 41 (19.5 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 310 RNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRL 349
+N NQ ++ K + + E +I+ +E D WR+
Sbjct: 1061 KNANNQIMQLKKICNHPFVYEEVENLINPNIETNDQIWRV 1100
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 293 KSASASRNMLQEYELFFRNDK 313
KS S R L++ L F N K
Sbjct: 1571 KSYSKIREFLEDIHLMFTNAK 1591
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 184 (69.8 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 41/101 (40%), Positives = 56/101 (55%)
Query: 316 FIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXX 375
F +E KF+VL+TT+E I+ D +L +W+ IIDEA R+K+R
Sbjct: 1072 FSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1131
Query: 376 XXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ 416
+GTPLQN++ EL+SLLN L P F N +AF F Q
Sbjct: 1132 RRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQ 1172
Score = 121 (47.7 bits), Expect = 4.4e-19, Sum P(3) = 4.4e-19
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFK-TGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q + + + + G GP L+I P + + NW+ E W ++ I
Sbjct: 1001 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIY 1060
Query: 128 YHAT 131
Y T
Sbjct: 1061 YVGT 1064
Score = 116 (45.9 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
+ P TLR YQL GL W++ + N N ILADEMGLGKT+Q + L + G
Sbjct: 971 RQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1028
Score = 73 (30.8 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 155 FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSR 199
FK G GP L+I P + + NW+ E W ++ I Y G + + S+
Sbjct: 1026 FK-GNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSK 1070
Score = 62 (26.9 bits), Expect = 1.4e-21, Sum P(4) = 1.4e-21
Identities = 26/79 (32%), Positives = 32/79 (40%)
Query: 440 EDVEKSIAPKEETVVEVELTNIQKKYY-----RGIL-----ERNFSFLSKGTTSANV-PN 488
EDVE S+ K V+ ++ IQ Y G L + A +
Sbjct: 1214 EDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRT 1273
Query: 489 LMNTMMELRKCCIHPYLLN 507
L N MELRK C HP LLN
Sbjct: 1274 LNNRCMELRKACNHP-LLN 1291
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 201 (75.8 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 58/216 (26%), Positives = 96/216 (44%)
Query: 308 FFRNDKNQFIKEKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
++ N ++ K + FH+ I+++ ++ D L K W+ I+DEAH +KN N K
Sbjct: 742 YYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTK 801
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQN++ EL+SLL+FL P F+++ F F L E
Sbjct: 802 RWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEK 861
Query: 422 E--------VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473
++ ++VEK + K E +++ +LT Q+ Y + N
Sbjct: 862 SKIHHSKELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI--N 919
Query: 474 FSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNGK 509
+ + N LMN +++LRK C H L K
Sbjct: 920 NKNVQNTLNTGNYIGLMNILIQLRKVCNHCDLFTNK 955
Score = 119 (46.9 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 23 PVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILA 74
P+ K TLR YQ GL+WL++ + N N ILADEMGLGKT+Q ++ LA
Sbjct: 656 PIIKA--TLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLA 705
Score = 112 (44.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKT+Q ++ + + + I GP LVI P S + NW+ E + + ++
Sbjct: 682 NGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILS 741
Query: 128 YH 129
Y+
Sbjct: 742 YY 743
Score = 69 (29.3 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 146 CLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKER 204
C+ + I GP LVI P S + NW+ E + + ++ Y+G + + R K+R
Sbjct: 697 CISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNE---RYKKR 753
Query: 205 L 205
+
Sbjct: 754 V 754
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 201 (75.8 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 58/216 (26%), Positives = 96/216 (44%)
Query: 308 FFRNDKNQFIKEKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
++ N ++ K + FH+ I+++ ++ D L K W+ I+DEAH +KN N K
Sbjct: 742 YYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTK 801
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ---LKTES 421
+GTPLQN++ EL+SLL+FL P F+++ F F L E
Sbjct: 802 RWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEK 861
Query: 422 E--------VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERN 473
++ ++VEK + K E +++ +LT Q+ Y + N
Sbjct: 862 SKIHHSKELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI--N 919
Query: 474 FSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNGK 509
+ + N LMN +++LRK C H L K
Sbjct: 920 NKNVQNTLNTGNYIGLMNILIQLRKVCNHCDLFTNK 955
Score = 119 (46.9 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 23 PVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILA 74
P+ K TLR YQ GL+WL++ + N N ILADEMGLGKT+Q ++ LA
Sbjct: 656 PIIKA--TLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLA 705
Score = 112 (44.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFVDAV-FKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIV 127
N ILADEMGLGKT+Q ++ + + + I GP LVI P S + NW+ E + + ++
Sbjct: 682 NGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILS 741
Query: 128 YH 129
Y+
Sbjct: 742 YY 743
Score = 69 (29.3 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 146 CLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKER 204
C+ + I GP LVI P S + NW+ E + + ++ Y+G + + R K+R
Sbjct: 697 CISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNE---RYKKR 753
Query: 205 L 205
+
Sbjct: 754 V 754
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 225 (84.3 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 66/215 (30%), Positives = 104/215 (48%)
Query: 309 FRNDK--NQFIKEKDLYK-FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKX 365
+R +K + I +K L + F + ITTF+++I + L +W ++DE HR+KN +
Sbjct: 965 YRGNKLERKHIAKKLLEQTFDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRF 1024
Query: 366 XXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEFGQLK--- 418
+GTPLQNN++EL+SLLNFL P+ FS+ + F+ K
Sbjct: 1025 HVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVY 1084
Query: 419 ---TESE----VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
TE E +N +DV KS+ K E + +EL+ QK Y+ I
Sbjct: 1085 EHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQT 1144
Query: 472 RNFSFLS-KGTTSANVPNLMNTMMELRKCCIHPYL 505
+ F ++ G+ + + N +M+LRK HPYL
Sbjct: 1145 KGFKQVNHNGSITTKI--FQNIVMQLRKIVNHPYL 1177
Score = 157 (60.3 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 41/92 (44%), Positives = 49/92 (53%)
Query: 72 ILADEMGLGKTIQSLTFVDAV--FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQ+++ + FK I L+I PLST+PNW EF W LNVI Y
Sbjct: 906 ILADEMGLGKTIQTISLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITY 965
Query: 129 HATFVVLLQTGSKF----FRICLEFFVDAVFK 156
+ K F IC+ F D V K
Sbjct: 966 RGNKLERKHIAKKLLEQTFDICITTF-DLVIK 996
Score = 115 (45.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
K P L YQLEGL WL+ + N + ILADEMGLGKTIQ+++
Sbjct: 874 KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTIS 921
Score = 110 (43.8 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 36/114 (31%), Positives = 49/114 (42%)
Query: 89 VDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHATFVVLLQTGSKFFRICL 147
+ V K ++ P ++I + +Q E W L H + G I L
Sbjct: 865 ISHVVKEKVKQPSILIG--GELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISL 922
Query: 148 EFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRR 200
++ FK I L+I PLST+PNW EF W LNVI Y G KL R+
Sbjct: 923 FAYLKE-FKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGN--KLERK 973
Score = 48 (22.0 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 10 KPPASDWVKL--EKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADE 57
K +++K KS ++ N ++L+ Y L NW + N +L++E
Sbjct: 651 KKELQEYIKQIHNKSKIHNNISSLKQYMLIS-NWKELTKHNNYMTLLSEE 699
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 311 NDKNQFIKEKDLYKF 325
NDK Q E+D Y F
Sbjct: 1764 NDKMQVKDEEDYYGF 1778
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 303 QEYELFFRNDKNQFIKEKDLYKFHVLITTFEI 334
++Y F ++NQ EK L K + LI E+
Sbjct: 1773 EDYYGFILKEENQNDIEKILIKSNKLINKDEL 1804
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 225 (84.3 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 66/215 (30%), Positives = 104/215 (48%)
Query: 309 FRNDK--NQFIKEKDLYK-FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKX 365
+R +K + I +K L + F + ITTF+++I + L +W ++DE HR+KN +
Sbjct: 965 YRGNKLERKHIAKKLLEQTFDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRF 1024
Query: 366 XXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSN----NEAFMSEFGQLK--- 418
+GTPLQNN++EL+SLLNFL P+ FS+ + F+ K
Sbjct: 1025 HVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVY 1084
Query: 419 ---TESE----VNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILE 471
TE E +N +DV KS+ K E + +EL+ QK Y+ I
Sbjct: 1085 EHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQT 1144
Query: 472 RNFSFLS-KGTTSANVPNLMNTMMELRKCCIHPYL 505
+ F ++ G+ + + N +M+LRK HPYL
Sbjct: 1145 KGFKQVNHNGSITTKI--FQNIVMQLRKIVNHPYL 1177
Score = 157 (60.3 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 41/92 (44%), Positives = 49/92 (53%)
Query: 72 ILADEMGLGKTIQSLTFVDAV--FKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
ILADEMGLGKTIQ+++ + FK I L+I PLST+PNW EF W LNVI Y
Sbjct: 906 ILADEMGLGKTIQTISLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITY 965
Query: 129 HATFVVLLQTGSKF----FRICLEFFVDAVFK 156
+ K F IC+ F D V K
Sbjct: 966 RGNKLERKHIAKKLLEQTFDICITTF-DLVIK 996
Score = 115 (45.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
K P L YQLEGL WL+ + N + ILADEMGLGKTIQ+++
Sbjct: 874 KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTIS 921
Score = 110 (43.8 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 36/114 (31%), Positives = 49/114 (42%)
Query: 89 VDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW-TDLNVIVYHATFVVLLQTGSKFFRICL 147
+ V K ++ P ++I + +Q E W L H + G I L
Sbjct: 865 ISHVVKEKVKQPSILIG--GELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISL 922
Query: 148 EFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRR 200
++ FK I L+I PLST+PNW EF W LNVI Y G KL R+
Sbjct: 923 FAYLKE-FKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGN--KLERK 973
Score = 48 (22.0 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 10 KPPASDWVKL--EKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADE 57
K +++K KS ++ N ++L+ Y L NW + N +L++E
Sbjct: 651 KKELQEYIKQIHNKSKIHNNISSLKQYMLIS-NWKELTKHNNYMTLLSEE 699
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 311 NDKNQFIKEKDLYKF 325
NDK Q E+D Y F
Sbjct: 1764 NDKMQVKDEEDYYGF 1778
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 303 QEYELFFRNDKNQFIKEKDLYKFHVLITTFEI 334
++Y F ++NQ EK L K + LI E+
Sbjct: 1773 EDYYGFILKEENQNDIEKILIKSNKLINKDEL 1804
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 174 (66.3 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKT+Q++ F+ ++ TG GP LV+ P ST+ NW REF W +N+++Y
Sbjct: 494 NMILADEMGLGKTVQAIAFLAHLYVTGDSGPHLVVVPASTMDNWIREFNQWCPSMNILLY 553
Query: 129 HAT 131
+ +
Sbjct: 554 YGS 556
Score = 161 (61.7 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
Identities = 54/202 (26%), Positives = 87/202 (43%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXX 379
+F+V++TT+ IS + F RL + DE H LKN +
Sbjct: 573 EFNVIVTTYNCAISSAEDRSLFR-RLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLL 631
Query: 380 XSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTES----------EVNXXXXX 429
+GTP+QNN+ EL SLLNF+ P FS++ + + K +S +
Sbjct: 632 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKERIAHAKQI 691
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489
+V K + PK++ + +++ Q++ Y +L + + T N L
Sbjct: 692 MKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSID--ATEKN-SEL 748
Query: 490 MNTMMELRKCCIHPYLLNGKTY 511
N MM LRK HP LL+ + Y
Sbjct: 749 CNVMMHLRKMANHP-LLHRQYY 769
Score = 111 (44.1 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKK 196
F+ ++ TG GP LV+ P ST+ NW REF W +N+++Y+G +++
Sbjct: 512 FLAHLYVTGDSGPHLVVVPASTMDNWIREFNQWCPSMNILLYYGSQEE 559
Score = 109 (43.4 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
W +E+ + + L+ YQ GLNWL + N ILADEMGLGKT+Q++
Sbjct: 460 W-NIEQPSIMSENLVLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAI 510
Score = 39 (18.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 286 SSGTDGLKSASASRNMLQEYELFFRNDKNQFIK 318
S+ T +K S +N+ + E+F + + ++ +K
Sbjct: 117 SASTAQVKDGSKYKNLQRLKEIFPKQNNDELLK 149
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 164 (62.8 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
Identities = 58/204 (28%), Positives = 91/204 (44%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX 380
++V++TT+ IS + F RL I DE H LKN
Sbjct: 597 YNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 381 SGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTES----------EVNXXXXXX 430
+GTP+QNN+ EL SLLNF+ P FS++ + + KT+S +
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGI---LERNFSFLSKGTTSANVP 487
E+V K + PK++ + ++ Q++ Y G+ L+++ + L K T NV
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNV- 774
Query: 488 NLMNTMMELRKCCIHPYLLNGKTY 511
MM+LRK HP LL+ + Y
Sbjct: 775 -----MMQLRKMANHP-LLHRQYY 792
Score = 161 (61.7 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQ++ F+ +++ G GP L++ P STI NW RE W L V+ Y
Sbjct: 517 NGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCY 576
Query: 129 HAT 131
+ +
Sbjct: 577 YGS 579
Score = 118 (46.6 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
W +E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++
Sbjct: 483 W-NIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAI 533
Score = 99 (39.9 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKK 196
F+ +++ G GP L++ P STI NW RE W L V+ Y+G +++
Sbjct: 535 FLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 582
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 173 (66.0 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKTIQ++ F+ +F+ G +GP L++ P STI NW RE W LNV+ Y
Sbjct: 512 NGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCY 571
Query: 129 HAT 131
+ +
Sbjct: 572 YGS 574
Score = 161 (61.7 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 59/204 (28%), Positives = 91/204 (44%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX 380
++V++TT+ IS + F RL I DE H LKN
Sbjct: 592 YNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLL 650
Query: 381 SGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKT---------ESE-VNXXXXXX 430
+GTP+QNN+ EL SLLNF+ P FS++ + + KT E E +
Sbjct: 651 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQII 710
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGI---LERNFSFLSKGTTSANVP 487
E+V K + PK++ + ++ Q++ Y G+ L+++ + L K T NV
Sbjct: 711 KPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNV- 769
Query: 488 NLMNTMMELRKCCIHPYLLNGKTY 511
MM+LRK HP LL+ + Y
Sbjct: 770 -----MMQLRKMANHP-LLHRQYY 787
Score = 114 (45.2 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
W + E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++ L
Sbjct: 478 WNR-EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ 536
Query: 76 EMGLG 80
E G
Sbjct: 537 EGNKG 541
Score = 112 (44.5 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLK 208
F+ +F+ G +GP L++ P STI NW RE W LNV+ Y+G +++ R + R +
Sbjct: 530 FLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEE---RKQIRFNIH 586
Query: 209 YVAADY 214
DY
Sbjct: 587 NKYEDY 592
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 166 (63.5 bits), Expect = 3.2e-21, Sum P(4) = 3.2e-21
Identities = 51/175 (29%), Positives = 82/175 (46%)
Query: 310 RNDKNQFIKEKDLYK-FHVLITTFEIIIS--DCLELKDFNWRLCIIDEAHRLKNRNCKXX 366
R + +K+K K F+V++TT+ ++ + D LK F++ I+DEA +KN + K
Sbjct: 629 REELRYELKKKRPGKDFNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSKRY 688
Query: 367 XXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSN--NEAFMS----EFGQLKTE 420
+GTPLQNN+ EL+SLLNFL P F + + ++ E+ +
Sbjct: 689 KNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVKKDNYLLNQLLEYNGDDCD 748
Query: 421 SEVNXXXXXXXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFS 475
S + V K + PK E V +L Q + Y+ I+ER+ S
Sbjct: 749 SAITRMKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIERSKS 803
Score = 140 (54.3 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKT-GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKT+Q+++ + + + GP LV+ P + + NW+REF+ W L+++
Sbjct: 562 NGILADEMGLGKTVQTISLLAHIKEAYNDNGPHLVVVPATILANWEREFQTWCPSLSIVR 621
Query: 128 YH 129
Y+
Sbjct: 622 YY 623
Score = 110 (43.8 bits), Expect = 3.2e-21, Sum P(4) = 3.2e-21
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 18 KLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLT 68
KL P N +R YQL GLNW+ + N ILADEMGLGKT+Q+++
Sbjct: 530 KLVAQPKIIN-KVMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTIS 579
Score = 99 (39.9 bits), Expect = 3.2e-21, Sum P(4) = 3.2e-21
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLK 208
GP LV+ P + + NW+REF+ W L+++ Y+G L R++ R LK
Sbjct: 592 GPHLVVVPATILANWEREFQTWCPSLSIVRYYGN---LREREELRYELK 637
Score = 50 (22.7 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKD 344
+L Y L F N+ F+K D Y F +L I SD K+
Sbjct: 648 ILTTYNLLFANNDRGFLKRFD-YSFLILDEAQNIKNSDSKRYKN 690
Score = 46 (21.3 bits), Expect = 3.2e-21, Sum P(4) = 3.2e-21
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 489 LMNTMMELRKCCIHPYLLNGKTY 511
L N +M+LRK HP L Y
Sbjct: 895 LNNILMQLRKAANHPLLCKNIFY 917
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 173 (66.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKTIQ++ F+ +++ G RGP L++ P ST+ NW RE W +LNV+ Y
Sbjct: 453 NGILADEMGLGKTIQAIAFLAHIYQEGDRGPHLIVVPASTLDNWIREVNLWCPELNVLFY 512
Query: 129 H 129
+
Sbjct: 513 Y 513
Score = 155 (59.6 bits), Expect = 3.3e-21, Sum P(3) = 3.3e-21
Identities = 55/196 (28%), Positives = 85/196 (43%)
Query: 325 FHVLITTFEIIIS--DCLEL-KDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXS 381
F+V++TT+ IS D L + I DE H LKN + +
Sbjct: 534 FNVIVTTYNCAISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLT 593
Query: 382 GTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEF--GQLKTESEVNXXXXXXXXXXXXXXX 439
GTP+QNN+ EL SLLNF+ P FS++ + + + KT E +
Sbjct: 594 GTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIK 653
Query: 440 --------EDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPN--L 489
++V K + PK++ + ++ Q++ Y +L + L K T N N +
Sbjct: 654 PFILRRVKDEVLKQLPPKKDHIELCAMSEKQEQLYCDLLNK----LKK-TMKGNEKNSDM 708
Query: 490 MNTMMELRKCCIHPYL 505
N MM+LRK HP L
Sbjct: 709 GNAMMQLRKMANHPLL 724
Score = 116 (45.9 bits), Expect = 3.3e-21, Sum P(3) = 3.3e-21
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSL 67
W +E+ V L+ YQ GLNWL +G N ILADEMGLGKTIQ++
Sbjct: 419 W-NIEQPSVLNQSLELKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAI 469
Score = 107 (42.7 bits), Expect = 3.3e-21, Sum P(3) = 3.3e-21
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLR 206
F+ +++ G RGP L++ P ST+ NW RE W +LNV+ Y+ S+ D++ LR
Sbjct: 471 FLAHIYQEGDRGPHLIVVPASTLDNWIREVNLWCPELNVLFYYVG----SQEDRKHLR 524
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 172 (65.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQ++ F+ +F+ G +GP L++ P STI NW RE W LNV+ Y
Sbjct: 515 NGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCY 574
Query: 129 HAT 131
+ +
Sbjct: 575 YGS 577
Score = 161 (61.7 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 59/204 (28%), Positives = 91/204 (44%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXXX 380
++V++TT+ IS + F RL I DE H LKN
Sbjct: 595 YNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLL 653
Query: 381 SGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKT---------ESE-VNXXXXXX 430
+GTP+QNN+ EL SLLNF+ P FS++ + + KT E E +
Sbjct: 654 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQII 713
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGI---LERNFSFLSKGTTSANVP 487
E+V K + PK++ + ++ Q++ Y G+ L+++ + L K T NV
Sbjct: 714 KPFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNV- 772
Query: 488 NLMNTMMELRKCCIHPYLLNGKTY 511
MM+LRK HP LL+ + Y
Sbjct: 773 -----MMQLRKMANHP-LLHRQYY 790
Score = 117 (46.2 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
W +E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++ L
Sbjct: 481 W-NIEQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ 539
Query: 76 EMGLG 80
E G
Sbjct: 540 EGNKG 544
Score = 111 (44.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
F+ +F+ G +GP L++ P STI NW RE W LNV+ Y+G +++ R + R +
Sbjct: 533 FLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEE---RKQIRFNIH 589
Query: 209 YVAADY 214
DY
Sbjct: 590 NKYEDY 595
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 201 (75.8 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 53/193 (27%), Positives = 89/193 (46%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D + NWR I+DEA +KN + +GTP
Sbjct: 708 FHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTP 767
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKTESEVNXXXXXXXXXXXX--- 436
LQN++ EL+SL++FL P F ++ F F G ++ E N
Sbjct: 768 LQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFL 827
Query: 437 --XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
DVEK + K E V+ L+ Q+ Y + + + + + + +++N +M
Sbjct: 828 LRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT--KETLATGHFMSVINILM 885
Query: 495 ELRKCCIHPYLLN 507
+LRK C HP L +
Sbjct: 886 QLRKVCNHPNLFD 898
Score = 127 (49.8 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + G GP L+I P S + NW+ E + W ++
Sbjct: 628 NGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILT 687
Query: 128 YH 129
Y+
Sbjct: 688 YY 689
Score = 110 (43.8 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
LR YQ GL+WL+ + N ILADEMGLGKTIQ+++ LA E G
Sbjct: 608 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 655
Score = 89 (36.4 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 29/103 (28%), Positives = 45/103 (43%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKYVA-ADY-- 214
GP L+I P S + NW+ E + W ++ Y+G +K KL R+ + +V Y
Sbjct: 658 GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 717
Query: 215 VPKDGEVLYG-NWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
V +D + NW R + + F RW+ L N R
Sbjct: 718 VLQDHQAFRRKNW-RYLILDEAQNIKNFKSQRWQSLLNFNSQR 759
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 201 (75.8 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 53/193 (27%), Positives = 89/193 (46%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D + NWR I+DEA +KN + +GTP
Sbjct: 710 FHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTP 769
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKTESEVNXXXXXXXXXXXX--- 436
LQN++ EL+SL++FL P F ++ F F G ++ E N
Sbjct: 770 LQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFL 829
Query: 437 --XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
DVEK + K E V+ L+ Q+ Y + + + + + + +++N +M
Sbjct: 830 LRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT--KETLATGHFMSVINILM 887
Query: 495 ELRKCCIHPYLLN 507
+LRK C HP L +
Sbjct: 888 QLRKVCNHPNLFD 900
Score = 127 (49.8 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + G GP L+I P S + NW+ E + W ++
Sbjct: 630 NGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILT 689
Query: 128 YH 129
Y+
Sbjct: 690 YY 691
Score = 110 (43.8 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
LR YQ GL+WL+ + N ILADEMGLGKTIQ+++ LA E G
Sbjct: 610 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 657
Score = 89 (36.4 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 29/103 (28%), Positives = 45/103 (43%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKYVA-ADY-- 214
GP L+I P S + NW+ E + W ++ Y+G +K KL R+ + +V Y
Sbjct: 660 GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 719
Query: 215 VPKDGEVLYG-NWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
V +D + NW R + + F RW+ L N R
Sbjct: 720 VLQDHQAFRRKNW-RYLILDEAQNIKNFKSQRWQSLLNFNSQR 761
Score = 39 (18.8 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 170 STIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRL 207
ST+ R+F W+++ +V ++ +L + K+ L L
Sbjct: 177 STMAKDVRQF--WSNVEKVVQFKQQSRLEEKRKKALDL 212
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 154 (59.3 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 36/107 (33%), Positives = 56/107 (52%)
Query: 308 FFRNDKNQFIKEKDLYK---FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCK 364
++ N + + K YK +HV IT++++++ D + W+ I+DEAH +KN +
Sbjct: 527 YYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQ 586
Query: 365 XXXXXXXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFS-NNEAF 410
+GTPLQNN+ EL+SLL FL P + NN AF
Sbjct: 587 RWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAF 633
Score = 113 (44.8 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 70 NCILADEMGLGKTIQSLTFVD--AVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVI 126
N ILADEMGLGKTIQ++ + A K GP L+I P S + NW+ EF+ + ++
Sbjct: 467 NGILADEMGLGKTIQTIALLAHLACEKENW-GPHLIIVPTSVMLNWEMEFKKFLPGFKIL 525
Query: 127 VYH 129
Y+
Sbjct: 526 TYY 528
Score = 107 (42.7 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADE 76
TLR YQ GL WL + N ILADEMGLGKTIQ++ LA E
Sbjct: 446 TLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACE 492
Score = 86 (35.3 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 441 DVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCC 500
+VEK + K E VV +L+ Q+ Y + R + + S N +++N +M+LRK C
Sbjct: 683 EVEKQMPAKYEHVVYCQLSKRQRFLYDDFINR--ARTREILASGNFMSIINCLMQLRKVC 740
Query: 501 IHPYL 505
HP L
Sbjct: 741 NHPNL 745
Score = 73 (30.8 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDK 202
GP L+I P S + NW+ EF+ + ++ Y+G ++ R++K
Sbjct: 497 GPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQE--RKEK 537
>UNIPROTKB|F1P5V5 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000075106 EMBL:AADN02027839
EMBL:AADN02027838 IPI:IPI01017281 Ensembl:ENSGALT00000008747
ArrayExpress:F1P5V5 Uniprot:F1P5V5
Length = 227
Score = 171 (65.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVY 128
N ILADEMGLGKTIQ + + + + G+ GPFLV PLST+PNW EF+ +T ++ +++Y
Sbjct: 101 NGILADEMGLGKTIQCIATIALMVERGVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLY 160
Query: 129 H 129
H
Sbjct: 161 H 161
Score = 129 (50.5 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 21 KSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
+ P +R YQ+EG+ WL W NG N ILADEMGLGKTIQ + ++ +
Sbjct: 71 QQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIALMVE 125
Score = 120 (47.3 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG---RRKKLSRR 200
G+ GPFLV PLST+PNW EF+ +T ++ +++YHG R+KL R+
Sbjct: 127 GVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRK 173
Score = 92 (37.4 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 324 KFH-VLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRN 362
K H V+IT+FEI + D L+ W+ I+DE HR+KN N
Sbjct: 182 KIHPVVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMN 221
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 171 (65.3 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 52/201 (25%), Positives = 92/201 (45%)
Query: 322 LYKFHVLITTFEIIISDCLELKDF-NWRL--CIIDEAHRLKNRNCKXXXXXXXXXXXXXX 378
+ +++++++T+ + I + + F +L + DE H LKN N
Sbjct: 526 IVEYNIIVSTYNLAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRL 585
Query: 379 XXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESE--------VNXXXXXX 430
+GTPLQNN+ EL SLLNF+ P FS++ + +++ +K+ E +
Sbjct: 586 LLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQIAKMFSMKSSEEQSSFERDRITHAKLIM 645
Query: 431 XXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLM 490
+V K + KEE V ++ Q++ Y +L + K +++ L
Sbjct: 646 KPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHK-----LKHSSNGEKRELT 700
Query: 491 NTMMELRKCCIHPYLLNGKTY 511
N MM+LRK HP LL+ + Y
Sbjct: 701 NVMMQLRKMSNHP-LLHRQFY 720
Score = 156 (60.0 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHA 130
ILADEMGLGKTIQ+++F+ +++ G GP L+ P ST+ NW RE W V+VY+
Sbjct: 451 ILADEMGLGKTIQAISFLAHLYQEGNHGPHLITVPASTLDNWVRELNLWCPSFKVLVYYG 510
Query: 131 T 131
+
Sbjct: 511 S 511
Score = 94 (38.1 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHG 192
F+ +++ G GP L+ P ST+ NW RE W V+VY+G
Sbjct: 467 FLAHLYQEGNHGPHLITVPASTLDNWVRELNLWCPSFKVLVYYG 510
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 201 (75.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 53/193 (27%), Positives = 89/193 (46%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D + NWR I+DEA +KN + +GTP
Sbjct: 724 FHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTP 783
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKTESEVNXXXXXXXXXXXX--- 436
LQN++ EL+SL++FL P F ++ F F G ++ E N
Sbjct: 784 LQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFL 843
Query: 437 --XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
DVEK + K E V+ L+ Q+ Y + + + + + + +++N +M
Sbjct: 844 LRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT--KETLATGHFMSVINILM 901
Query: 495 ELRKCCIHPYLLN 507
+LRK C HP L +
Sbjct: 902 QLRKVCNHPNLFD 914
Score = 127 (49.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + G GP L+I P S + NW+ E + W ++
Sbjct: 644 NGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILT 703
Query: 128 YH 129
Y+
Sbjct: 704 YY 705
Score = 110 (43.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
LR YQ GL+WL+ + N ILADEMGLGKTIQ+++ LA E G
Sbjct: 624 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 671
Score = 89 (36.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/103 (28%), Positives = 45/103 (43%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKYVA-ADY-- 214
GP L+I P S + NW+ E + W ++ Y+G +K KL R+ + +V Y
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 215 VPKDGEVLYG-NWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
V +D + NW R + + F RW+ L N R
Sbjct: 734 VLQDHQAFRRKNW-RYLILDEAQNIKNFKSQRWQSLLNFNSQR 775
Score = 39 (18.8 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 170 STIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRL 207
ST+ R+F W+++ +V ++ +L + K+ L L
Sbjct: 196 STMAKDVRQF--WSNVEKVVQFKQQSRLEEKRKKALDL 231
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQ++ F+ +++ G +GP L++ P STI NW RE W L V+ Y
Sbjct: 517 NGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCY 576
Query: 129 HAT 131
+ +
Sbjct: 577 YGS 579
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 57/203 (28%), Positives = 88/203 (43%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXX 379
+++V++TT+ IS + F RL I DE H LKN
Sbjct: 596 EYNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
Query: 380 XSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTES----------EVNXXXXX 429
+GTP+QNN+ EL SLLNF+ P FS++ + + KT+S +
Sbjct: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489
E+V K + PK++ + ++ Q++ Y G+ R L K +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNR----LKKSINNIEKSTE 770
Query: 490 M-NTMMELRKCCIHPYLLNGKTY 511
M N MM+LRK HP LL+ + Y
Sbjct: 771 MCNVMMQLRKMANHP-LLHRQYY 792
Score = 119 (46.9 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
W +E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++ L
Sbjct: 483 W-NIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 541
Query: 76 EMGLG 80
E G
Sbjct: 542 EGNKG 546
Score = 103 (41.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
F+ +++ G +GP L++ P STI NW RE W L V+ Y+G +++ ++ + + K
Sbjct: 535 FLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE-RKQIRYNIHSK 593
Query: 209 Y 209
Y
Sbjct: 594 Y 594
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQ++ F+ +++ G +GP L++ P STI NW RE W L V+ Y
Sbjct: 517 NGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCY 576
Query: 129 HAT 131
+ +
Sbjct: 577 YGS 579
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 57/203 (28%), Positives = 88/203 (43%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXX 379
+++V++TT+ IS + F RL I DE H LKN
Sbjct: 596 EYNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
Query: 380 XSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTES----------EVNXXXXX 429
+GTP+QNN+ EL SLLNF+ P FS++ + + KT+S +
Sbjct: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489
E+V K + PK++ + ++ Q++ Y G+ R L K +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNR----LKKSINNIEKSTE 770
Query: 490 M-NTMMELRKCCIHPYLLNGKTY 511
M N MM+LRK HP LL+ + Y
Sbjct: 771 MCNVMMQLRKMANHP-LLHRQYY 792
Score = 119 (46.9 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
W +E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++ L
Sbjct: 483 W-NIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 541
Query: 76 EMGLG 80
E G
Sbjct: 542 EGNKG 546
Score = 103 (41.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
F+ +++ G +GP L++ P STI NW RE W L V+ Y+G +++ ++ + + K
Sbjct: 535 FLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE-RKQIRYNIHSK 593
Query: 209 Y 209
Y
Sbjct: 594 Y 594
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQ++ F+ +++ G +GP L++ P STI NW RE W L V+ Y
Sbjct: 517 NGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCY 576
Query: 129 HAT 131
+ +
Sbjct: 577 YGS 579
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 57/203 (28%), Positives = 88/203 (43%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXX 379
+++V++TT+ IS + F RL I DE H LKN
Sbjct: 596 EYNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
Query: 380 XSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTES----------EVNXXXXX 429
+GTP+QNN+ EL SLLNF+ P FS++ + + KT+S +
Sbjct: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNL 489
E+V K + PK++ + ++ Q++ Y G+ R L K +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNR----LKKSINNIEKSTE 770
Query: 490 M-NTMMELRKCCIHPYLLNGKTY 511
M N MM+LRK HP LL+ + Y
Sbjct: 771 MCNVMMQLRKMANHP-LLHRQYY 792
Score = 119 (46.9 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
W +E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++ L
Sbjct: 483 W-NIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 541
Query: 76 EMGLG 80
E G
Sbjct: 542 EGNKG 546
Score = 103 (41.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
F+ +++ G +GP L++ P STI NW RE W L V+ Y+G +++ ++ + + K
Sbjct: 535 FLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE-RKQIRYNIHSK 593
Query: 209 Y 209
Y
Sbjct: 594 Y 594
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 70 NCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
N ILADEMGLGKTIQ++ F+ +++ G +GP L++ P STI NW RE W L V+ Y
Sbjct: 520 NGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCY 579
Query: 129 HAT 131
+ +
Sbjct: 580 YGS 582
Score = 163 (62.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 57/205 (27%), Positives = 92/205 (44%)
Query: 324 KFHVLITTFEIIISDCLELKDFNWRL----CIIDEAHRLKNRNCKXXXXXXXXXXXXXXX 379
+++V++TT+ IS + F RL I DE H LKN
Sbjct: 599 EYNVIVTTYNCAISSSDDRSLFR-RLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 657
Query: 380 XSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTES----------EVNXXXXX 429
+GTP+QNN+ EL SLLNF+ P FS++ + + KT+S +
Sbjct: 658 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 717
Query: 430 XXXXXXXXXXEDVEKSIAPKEETVVEVELTNIQKKYYRGI---LERNFSFLSKGTTSANV 486
E+V K + PK++ + ++ Q++ Y G+ L+++ + + K T NV
Sbjct: 718 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNMEKNTEMCNV 777
Query: 487 PNLMNTMMELRKCCIHPYLLNGKTY 511
MM+LRK HP LL+ + Y
Sbjct: 778 ------MMQLRKMANHP-LLHRQYY 795
Score = 119 (46.9 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 16 WVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILAD 75
W +E+ + +L+ YQ GLNWL +G N ILADEMGLGKTIQ++ L
Sbjct: 486 W-NIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 544
Query: 76 EMGLG 80
E G
Sbjct: 545 EGNKG 549
Score = 103 (41.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 150 FVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHGRRKKLSRRDKERLRLK 208
F+ +++ G +GP L++ P STI NW RE W L V+ Y+G +++ ++ + + K
Sbjct: 538 FLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE-RKQIRYNIHSK 596
Query: 209 Y 209
Y
Sbjct: 597 Y 597
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 201 (75.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 53/193 (27%), Positives = 89/193 (46%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D + NWR I+DEA +KN + +GTP
Sbjct: 724 FHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTP 783
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKTESEVNXXXXXXXXXXXX--- 436
LQN++ EL+SL++FL P F ++ F F G ++ E N
Sbjct: 784 LQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFL 843
Query: 437 --XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
DVEK + K E V+ L+ Q+ Y + + + + + + +++N +M
Sbjct: 844 LRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT--KETLATGHFMSVINILM 901
Query: 495 ELRKCCIHPYLLN 507
+LRK C HP L +
Sbjct: 902 QLRKVCNHPNLFD 914
Score = 127 (49.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + G GP L+I P S + NW+ E + W ++
Sbjct: 644 NGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILT 703
Query: 128 YH 129
Y+
Sbjct: 704 YY 705
Score = 110 (43.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
LR YQ GL+WL+ + N ILADEMGLGKTIQ+++ LA E G
Sbjct: 624 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 671
Score = 89 (36.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 29/103 (28%), Positives = 45/103 (43%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKYVA-ADY-- 214
GP L+I P S + NW+ E + W ++ Y+G +K KL R+ + +V Y
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 215 VPKDGEVLYG-NWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
V +D + NW R + + F RW+ L N R
Sbjct: 734 VLQDHQAFRRKNW-RYLILDEAQNIKNFKSQRWQSLLNFNSQR 775
Score = 39 (18.8 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 170 STIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRL 207
ST+ R+F W+++ +V ++ +L + K+ L L
Sbjct: 196 STMAKDVRQF--WSNVEKVVQFKQQSRLEEKRKKALDL 231
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 201 (75.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 53/193 (27%), Positives = 89/193 (46%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXXXXXXXXXXXXXSGTP 384
FHV IT++++++ D + NWR I+DEA +KN + +GTP
Sbjct: 724 FHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTP 783
Query: 385 LQNNVNELFSLLNFLEPQQFSNNEAFMSEF-----GQLKTESEVNXXXXXXXXXXXX--- 436
LQN++ EL+SL++FL P F ++ F F G ++ E N
Sbjct: 784 LQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFL 843
Query: 437 --XXXEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMM 494
DVEK + K E V+ L+ Q+ Y + + + + + + +++N +M
Sbjct: 844 LRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT--KETLATGHFMSVINILM 901
Query: 495 ELRKCCIHPYLLN 507
+LRK C HP L +
Sbjct: 902 QLRKVCNHPNLFD 914
Score = 127 (49.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 70 NCILADEMGLGKTIQSLTFV-DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIV 127
N ILADEMGLGKTIQ+++ + + G GP L+I P S + NW+ E + W ++
Sbjct: 644 NGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILT 703
Query: 128 YH 129
Y+
Sbjct: 704 YY 705
Score = 110 (43.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 31 LRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
LR YQ GL+WL+ + N ILADEMGLGKTIQ+++ LA E G
Sbjct: 624 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 671
Score = 89 (36.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 29/103 (28%), Positives = 45/103 (43%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRK--KLSRRDKERLRLKYVA-ADY-- 214
GP L+I P S + NW+ E + W ++ Y+G +K KL R+ + +V Y
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 215 VPKDGEVLYG-NWSRSECFKVERGLLTFGWGRWKEFLANNEFR 256
V +D + NW R + + F RW+ L N R
Sbjct: 734 VLQDHQAFRRKNW-RYLILDEAQNIKNFKSQRWQSLLNFNSQR 775
Score = 39 (18.8 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 170 STIPNWQREFEAWTDLNVIVYHGRRKKLSRRDKERLRL 207
ST+ R+F W+++ +V ++ +L + K+ L L
Sbjct: 196 STMAKDVRQF--WSNVEKVVQFKQQSRLEEKRKKALDL 231
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 158 (60.7 bits), Expect = 9.2e-20, Sum P(3) = 9.2e-20
Identities = 42/168 (25%), Positives = 74/168 (44%)
Query: 310 RNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKXXXXX 369
R + +++ +++++TT+E + SD + W ++DE HR+KN K
Sbjct: 77 RENLRTCFRQQGAEPWNIVVTTYETLCSDLWFFQKTLWAHVVLDEGHRIKNSRSKRTQGV 136
Query: 370 XXXXXXXXXXXSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESEVNXXXXX 429
+GTP+QN++ EL+S+L++L P F A + E T+ + +
Sbjct: 137 YRLRSENRIVLTGTPIQNDLTELWSILHWLYPDVFVPATAKLFENAFSLTDGKFDSIFLS 196
Query: 430 XXXXXXXXXX-------EDVEKSIAPKEETVVEVELTNIQKKYYRGIL 470
+ + PK+ETV V LT +Q +YR IL
Sbjct: 197 HITRFLKVVMLRRTKCDSQIGLDLPPKKETVFSVPLTELQLGWYRTIL 244
Score = 120 (47.3 bits), Expect = 9.2e-20, Sum P(3) = 9.2e-20
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 72 ILADEMGLGKTIQSLTFVDAVFKTGIRGP--FLVIAPLSTIPNWQREFEAWTD-LNVIVY 128
ILAD+MGLGKT+Q+L+ V K R FLV+ PLS + W E WT L + Y
Sbjct: 12 ILADDMGLGKTLQALSLFQYV-KDNERADSKFLVVCPLSVLNTWMSEISRWTTGLRPMAY 70
Query: 129 H 129
H
Sbjct: 71 H 71
Score = 79 (32.9 bits), Expect = 9.2e-20, Sum P(3) = 9.2e-20
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 491 NTMMELRKCCIHPYLL 506
NT+MELRKC IHPYLL
Sbjct: 297 NTLMELRKCSIHPYLL 312
Score = 76 (31.8 bits), Expect = 8.9e-19, Sum P(4) = 8.9e-19
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 163 FLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
FLV+ PLS + W E WT L + YHG
Sbjct: 42 FLVVCPLSVLNTWMSEISRWTTGLRPMAYHG 72
Score = 72 (30.4 bits), Expect = 8.9e-19, Sum P(4) = 8.9e-19
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 43 MFSWFN-GRNCILADEMGLGKTIQSLT 68
M W N G ILAD+MGLGKT+Q+L+
Sbjct: 1 MIYWRNNGIGGILADDMGLGKTLQALS 27
WARNING: HSPs involving 242 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 513 470 0.00098 118 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 492
No. of states in DFA: 619 (66 KB)
Total size of DFA: 307 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 34.97u 0.07s 35.04t Elapsed: 00:00:21
Total cpu time: 35.05u 0.07s 35.12t Elapsed: 00:00:26
Start: Thu Aug 15 14:04:27 2013 End: Thu Aug 15 14:04:53 2013
WARNINGS ISSUED: 2