RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14708
(513 letters)
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 192 bits (489), Expect = 1e-52
Identities = 89/214 (41%), Positives = 140/214 (65%), Gaps = 10/214 (4%)
Query: 301 MLQEYELFFRNDKNQFIKEKDLY--KFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRL 358
+L+ + ++ +E+ L KF V +T+FE+ I + LK F+WR IIDEAHR+
Sbjct: 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRI 303
Query: 359 KNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLK 418
KN N L + +RL +R+L++GTPLQNN++EL++LLNFL P+ FS+ E F E+ Q+
Sbjct: 304 KNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETF-DEWFQIS 362
Query: 419 TESE----VNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNF 474
E++ V +L +L+P +LRRLK DVEK + PK+ET+++V ++ +QK+YY+ +L+++
Sbjct: 363 GENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL 422
Query: 475 SFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNG 508
++ G L+N M+LRKCC HPYL G
Sbjct: 423 DVVNAG---GERKRLLNIAMQLRKCCNHPYLFQG 453
Score = 77.5 bits (191), Expect = 7e-15
Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 18/91 (19%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFV 89
+R YQL GLNWL+ + NG N ILADEMGLGKT+Q TI L ++
Sbjct: 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ----------------TISLLGYL 212
Query: 90 DAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120
GI GP +V+AP ST+ NW E +
Sbjct: 213 HEY--RGITGPHMVVAPKSTLGNWMNEIRRF 241
Score = 37.5 bits (87), Expect = 0.020
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWTD-LNVIVYHG 192
GI GP +V+AP ST+ NW E + L + +HG
Sbjct: 217 GITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHG 252
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain. This domain is
found in proteins involved in a variety of processes
including transcription regulation (e.g., SNF2, STH1,
brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA
recombination (e.g. RAD54), and chromatin unwinding
(e.g. ISWI) as well as a variety of other proteins with
little functional information (e.g. lodestar, ETL1).
Length = 301
Score = 180 bits (458), Expect = 1e-52
Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 20/210 (9%)
Query: 317 IKEKDLYKFHVLITTFEIIISDCLELKDFN---WRLCIIDEAHRLKNRNCKLLEGLRLLH 373
K L + V+ITT+E++ D L N W ++DEAHRLKN KL + L+ L
Sbjct: 92 SMAKRLDTYDVVITTYEVLRKDKKLLSLLNKVEWDRVVLDEAHRLKNSKSKLYKALKKLK 151
Query: 374 LEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQ-------------LKTE 420
+R+LL+GTP+QNN+ EL++LLNFL P F + + F F K +
Sbjct: 152 TRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNKNKNLEKGK 211
Query: 421 SEVNKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSK- 479
+N+L LLKP +LRR K+DVEKS+ PK E V+ L++ Q+K Y+ +L + LS
Sbjct: 212 EGINRLHKLLKPFLLRRTKDDVEKSLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFA 271
Query: 480 ---GTTSANVPNLMNTMMELRKCCIHPYLL 506
G + + +L+N +M+LRK C HPYL
Sbjct: 272 VEGGEKNVGIASLLNLIMQLRKICNHPYLF 301
Score = 96.7 bits (241), Expect = 3e-22
Identities = 46/97 (47%), Positives = 56/97 (57%), Gaps = 18/97 (18%)
Query: 34 YQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFVDAVF 93
YQLEG+NWL+ NG ILADEMGLGKT+Q++ +LA + GK
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTI---ALLATYLKEGK------------ 45
Query: 94 KTGIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYH 129
RGP LV+ PLST+ NW EFE W L V+VYH
Sbjct: 46 --DRRGPTLVVCPLSTLHNWLNEFEKWAPALRVVVYH 80
Score = 54.3 bits (131), Expect = 4e-08
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 158 GIRGPFLVIAPLSTIPNWQREFEAWT-DLNVIVYHGRRKKLSRRDKERLRLKYVAADY 214
RGP LV+ PLST+ NW EFE W L V+VYHG ++ R K R + Y
Sbjct: 46 DRRGPTLVVCPLSTLHNWLNEFEKWAPALRVVVYHGDGRE---RSKLRQSMAKRLDTY 100
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 116 bits (291), Expect = 2e-27
Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 29/221 (13%)
Query: 315 QFIKEKDLYKFHVLITTFEIIISDCLE---LKDFNWRLCIIDEAHRLKNRNCKLLEGLRL 371
+K + F V+ITT+E++ ++ LK W ++DEAHR+KN + L+
Sbjct: 438 DLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQF 497
Query: 372 LHLEHRVLLSGTPLQNNVNELFSLLN-FLEP-----------QQFSNNEAFMSEFGQLKT 419
L +R+ L+GTPL+N + EL+SLL FL P + F + G L+
Sbjct: 498 LKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEA 557
Query: 420 ESE-VNKLQLLLKPMMLRRLKEDVE--KSIAPKEETVVEVELTNIQKKYYRGIL---ERN 473
+ L+ LL P +LRR KEDVE K + PK E V+E EL+ Q++ Y +L E+N
Sbjct: 558 RELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKN 617
Query: 474 FSFLSKGTTSANVP--------NLMNTMMELRKCCIHPYLL 506
L + + N++ + LR+ C HP L+
Sbjct: 618 QQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALV 658
Score = 70.1 bits (171), Expect = 1e-12
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 23/130 (17%)
Query: 4 IKKPKKKPPASDWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKT 63
+K+ + S+ + PV LR YQLEG+NWL
Sbjct: 313 LKELLAELRLSEDLLNAPEPV-DLSAELRPYQLEGVNWL-SELLR--------------- 355
Query: 64 IQSLTRNCILADEMGLGKTIQSLTFVDAVFKTG--IRGPFLVIAPLSTIPNWQREFEAWT 121
S ILAD+MGLGKT+Q++ + ++ ++ GP L++ P S + NW+REFE +
Sbjct: 356 --SNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413
Query: 122 DL--NVIVYH 129
V+VYH
Sbjct: 414 PDLRLVLVYH 423
Score = 40.5 bits (94), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 161 GPFLVIAPLSTIPNWQREFEAWTDL--NVIVYHGRRKKLSRRDKERLRL 207
GP L++ P S + NW+REFE + V+VYHG + +L ++ + L
Sbjct: 391 GPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDL 439
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 56.2 bits (136), Expect = 1e-09
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 306 ELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDF--NWRLCIIDEAHRLKNRNC 363
+ ++ K +++ T ++ + LK L I+DEAHRL N+
Sbjct: 61 GYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120
Query: 364 KLLEGLRLLHLE---HRVLLSGTP 384
LL LL L +LLS TP
Sbjct: 121 GLLGLKILLKLPKDRQVLLLSATP 144
Score = 52.7 bits (127), Expect = 2e-08
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 69 RNCILADEMGLGKTIQSLTFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW 120
R+ +LA G GKT+ +L + + + G LV+AP + N E
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKE 52
Score = 30.4 bits (69), Expect = 0.94
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 132 FVVLLQTGS-K---FFRICLEFFVDAVFKTGIRGPFLVIAPLSTIPNWQREFEAW---TD 184
++ TGS K LE + + G LV+AP + N E
Sbjct: 3 VLLAAPTGSGKTLAALLPILE-----LLDSLKGGQVLVLAPTRELANQVAERLKELFGEG 57
Query: 185 LNVIVYHG------RRKKLSRRDK 202
+ V G + K LS +
Sbjct: 58 IKVGYLIGGTSIKQQEKLLSGKTD 81
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 57.5 bits (139), Expect = 1e-09
Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 23/105 (21%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFV 89
LR YQ E + L+ R+ ILA G GKT+ +L
Sbjct: 8 PLRPYQKEAIEALLSGL----------------------RDVILAAPTGSGKTLAALLPA 45
Query: 90 DAVFKTGIRGPFLVIAPL-STIPNWQREFEAWTDLNVIVYHATFV 133
K G G LV+ P W E + + +
Sbjct: 46 LEALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYG 90
Score = 54.4 bits (131), Expect = 2e-08
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 310 RNDKNQFIKEKDLYKFHVLITTFEIIISDCLE--LKDFNWRLCIIDEAHRLKN--RNCKL 365
+ K + +++ + K +L+TT ++ L N L I+DEAHRL + +L
Sbjct: 91 GDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQL 150
Query: 366 LEGLRLLHLE-HRVLLSGTPLQNNVNELFSLLN 397
+ L+LL +LLS TP + N L LN
Sbjct: 151 EKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183
Score = 32.5 bits (74), Expect = 0.37
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 132 FVVLLQTGS----KFFRICLEFFVDAVFKTGIRGPFLVIAPL-STIPNWQREFEAW---T 183
++ TGS LE K G G LV+ P W E +
Sbjct: 27 VILAAPTGSGKTLAALLPALEAL-----KRGKGGRVLVLVPTRELAEQWAEELKKLGPSL 81
Query: 184 DLNVIVYHGRRKKLSRRDK 202
L V+ +G K + K
Sbjct: 82 GLKVVGLYGGDSKREQLRK 100
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair].
Length = 442
Score = 35.1 bits (81), Expect = 0.089
Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 38/200 (19%)
Query: 319 EKDLYKFHVLITTFEIIIS-DCLELKDFN-WRLCIIDEAHRLKNRNCKLLEGLRLLHLEH 376
EK+L V + T + + L+ N + L I DE H L + + + L L
Sbjct: 117 EKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILEL-LSAAYP 175
Query: 377 RVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESEVNKLQLLLKPMMLR 436
R+ L+ TP + + + L + + P + EV+ +L+
Sbjct: 176 RLGLTATPEREDGGRIGDLFDLIGPIVY-----------------EVSLKELID------ 212
Query: 437 RLKEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTT------SANVPNLM 490
E +AP + ++V LT +++ Y R L T + +
Sbjct: 213 ------EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIAS 266
Query: 491 NTMMELRKCCIHPYLLNGKT 510
+ + + + KT
Sbjct: 267 ERKIAAVRGLLLKHARGDKT 286
>gnl|CDD|238527 cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase
is the monoxygenase of a two-component system that
catalyzes the conversion of alkanesulfonates to the
corresponding aldehyde and sulfite. Alkanesulfonate
monoxygenase (SsuD) has an absolute requirement for
reduced flavin mononucleotide (FMNH2), which is provided
by the NADPH-dependent FMN oxidoreductase (SsuE).
Length = 244
Score = 34.2 bits (79), Expect = 0.11
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 241 FGW------GRWKEFLANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKS 294
FGW G W L+ W EY ++A+ + G DG + SPT SSG DG
Sbjct: 3 FGWFIPNVSGGW--SLSTPPRGRPWDFEYNRQIAQAAEELGFDG-ALSPTGSSGPDGWTV 59
Query: 295 ASA 297
A+A
Sbjct: 60 AAA 62
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 33.4 bits (77), Expect = 0.12
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 326 HVLITTFEIIISDCLELKDFNW----RLCIIDEAHRL--KNRNCKLLEGLRLLHLEHR-V 378
+L+ T ++ D L +L ++DEAHRL L E L L + + +
Sbjct: 98 DILVGTPGRLL-DLLRRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQIL 156
Query: 379 LLSGTP 384
LLS T
Sbjct: 157 LLSATL 162
>gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
Length = 956
Score = 33.7 bits (78), Expect = 0.29
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 347 WRLCIIDEAHRL------KNRNCKLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLE 400
W L ++DEAH L +R +++E L + +LL+ TP Q F+ L L+
Sbjct: 273 WDLLVVDEAHHLVWSEEAPSREYQVVEQLA-EVIPGVLLLTATPEQLGQESHFARLRLLD 331
Query: 401 PQQFSNNEAFMSE 413
P +F + EAF+ E
Sbjct: 332 PDRFHDYEAFVEE 344
Score = 31.0 bits (71), Expect = 1.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 54 LADEMGLGKTI 64
LADE+GLGKTI
Sbjct: 174 LADEVGLGKTI 184
Score = 31.0 bits (71), Expect = 1.7
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 73 LADEMGLGKTI 83
LADE+GLGKTI
Sbjct: 174 LADEVGLGKTI 184
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 31.1 bits (71), Expect = 0.54
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 351 IIDEAHRLKNRNCKLLEGLRLLHLEHR----VLLSGTP 384
IIDEA L + LE LR L+ V+L GTP
Sbjct: 84 IIDEAQHLSL---EALEELRDLYDLSEKGIQVILVGTP 118
>gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 100
Score = 30.3 bits (69), Expect = 0.64
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 347 WRLCIIDEAHRL--KNRNCKLLEGLRLLHLEHRVLLSGTP 384
+ IIDEAH K + K+LE + L + L+ TP
Sbjct: 62 ALVIIIDEAHHSSAKTKYRKILEKFKPAFL---LGLTATP 98
>gnl|CDD|220578 pfam10113, Fibrillarin_2, Fibrillarin-like archaeal protein.
Members of this family of proteins include archaeal
fibrillarin homologs.
Length = 505
Score = 30.9 bits (70), Expect = 1.9
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 57 EMGLGKTIQSLTR-----NCILADEMGLGKTIQSLTFVDAVFKTGIRG 99
E+ +G LT NCILAD MG + + D G+R
Sbjct: 62 EIAVGPCASDLTLDQLLENCILADRMGFPIHVCAYAVADIAENYGMRP 109
>gnl|CDD|227659 COG5361, COG5361, Uncharacterized conserved protein [Function
unknown].
Length = 458
Score = 30.9 bits (70), Expect = 1.9
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 240 TFGWGRWKEFLANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASA 297
W L R E +L + G GK F P + L A+
Sbjct: 219 DNYWEVLDALLD----REPPALRDEEARGQLAAIGIGKGKPFEPD--EKSPALLKAAI 270
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 29.8 bits (68), Expect = 2.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 250 LANNEFRNGWTEEYVEELARLLDLAG-----------GDGKSFSPTMSSGTDGLKSASAS 298
L E RN + E ++ELA LD A G GK+F +G D LK +A
Sbjct: 14 LNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAF----CAGAD-LKELAAL 68
Query: 299 RNMLQEYELFFR 310
+ +E F R
Sbjct: 69 SDAGEEARAFIR 80
>gnl|CDD|226598 COG4113, COG4113, Predicted nucleic acid-binding protein, contains
PIN domain [General function prediction only].
Length = 134
Score = 29.2 bits (66), Expect = 2.6
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 185 LNVIVYHGRRKKLSRRDKERL--RLKYVAADYVPKDGEVLYGNWSRSECFKV 234
N + R +LS + L+ +A VP E+L W + + +
Sbjct: 44 ANALWKLVVRVELSVEEALAALKLLRRLAVTRVPLSEELLERAWEIALKYSL 95
>gnl|CDD|133128 cd06597, GH31_transferase_CtsY, CtsY (cyclic
tetrasaccharide-synthesizing enzyme Y) is a bacterial
3-alpha-isomaltosyltransferase, first identified in
Arthrobacter globiformis, that produces cyclic
tetrasaccharides together with a closely related enzyme
CtsZ. CtsY and CtsZ both have a glycosyl hydrolase
family 31 (GH31) catalytic domain. All GH31 enzymes
cleave a terminal carbohydrate moiety from a substrate
that varies considerably in size, depending on the
enzyme, and may be either a starch or a glycoprotein.
Length = 340
Score = 30.2 bits (68), Expect = 2.7
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 232 FKVERGLLTFGWGRWKEFL---ANNEFRNGWTEEYVEELARLLDLAGGDGKSFSPTMSSG 288
FK + G WGR F +E RN + YV L A DG +FS +G
Sbjct: 181 FKTDGG--EHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFS---RAG 235
Query: 289 TDGLKSASA 297
G ++
Sbjct: 236 YTGAQAHGI 244
>gnl|CDD|151390 pfam10943, DUF2632, Protein of unknown function (DUF2632). This is
a family of membrane proteins with unknown function.
Length = 233
Score = 29.6 bits (66), Expect = 3.2
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 101 FLVIAPLSTIPNW--QREFEAWTDLNVIVYHATFVVLLQTGSKFFRICLEFFVDAVFKTG 158
FL +A L+ W F + L +I F++L+ KF F+ F
Sbjct: 73 FLSLASLAIAYWWLPSMTFTGYWALTIIATILVFILLIMMFVKFINFVKLFYRTGSFAIA 132
Query: 159 IRGPFLVIAPLSTI 172
IRGP +++A TI
Sbjct: 133 IRGPIVLVALDVTI 146
>gnl|CDD|219711 pfam08045, CDC14, Cell division control protein 14, SIN component.
Cdc14 is a component of the septation initiation network
(SIN) and is required for the localisation and activity
of Sid1. Sid1 is a protein kinase that localises
asymmetrically to one spindle pole body (SPB) in
anaphase disappears prior to cell separation.
Length = 255
Score = 29.6 bits (67), Expect = 3.2
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 309 FRNDKN--QFIKEKDLYKFHV---LITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNC 363
R+D +F K +D +++++ L+TT + ++ + N L I A RL
Sbjct: 60 LRDDPALREFFKLQDGFQYNLASRLVTTLDRLLGSGGNEQGQNDIL--ILNALRL----- 112
Query: 364 KLLEGLRLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQ 403
L+GL LLH R L S + N+N LL+ LEP
Sbjct: 113 --LQGLLLLHPPSRTLFSR---EANMNL---LLDLLEPAN 144
>gnl|CDD|226993 COG4646, COG4646, DNA methylase [Transcription / DNA replication,
recombination, and repair].
Length = 637
Score = 29.9 bits (67), Expect = 3.7
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 375 EHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNN-----EAFMSEFGQLKTESEVNKLQLL 429
VL SGTP+ N + E+FS+ +L +A+ S FG + TE E LQ
Sbjct: 474 RALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWASTFGDVTTELE---LQPS 530
Query: 430 LKPMMLRR 437
K + R
Sbjct: 531 AKYKPVVR 538
>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR;
Provisional.
Length = 441
Score = 29.6 bits (66), Expect = 4.3
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 411 MSEFGQLKTESEVNK---LQLLLKPMMLRRLKEDVEKSIAPKEETVVE 455
M+ + ++T E K L L+KP+ L+ +EK++A E
Sbjct: 83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAE 130
>gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG. [DNA metabolism,
DNA replication, recombination, and repair].
Length = 630
Score = 29.6 bits (67), Expect = 4.3
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 326 HVLITTFEIIISDCLELKDFNWRLCIIDEAHR--LKNRNCKLLEGLRLLHLEHRVLLSGT 383
H+++ T +I + +E K L IIDE HR ++ R KL E + H +++S T
Sbjct: 340 HLVVGT-HALIQEKVEFKRL--ALVIIDEQHRFGVEQRK-KLREKGQGGFTPHVLVMSAT 395
Query: 384 PL 385
P+
Sbjct: 396 PI 397
>gnl|CDD|153074 cd00242, Ecotin, Protease Inhibitor Ecotin; homodimeric protease
inhibitor. Protease Inhibitor Ecotin; homodimeric
protease inhibitor which binds two chymotrypsin-like
serine proteases to form a heterotetramer. Found in
bacterial periplasm. Inhibits a broad range of serine
proteases including collagenase, trypsin, chymotrypsin,
elastase, and factor Xa but not thrombin. Inhibition
mechanism involves binding at two different protease
contact sites: the primary and secondary binding sites.
Primary site loops of ecotin bind to the active site of
target proteases in a substrate-like manner with the P1
residue in ecotin mimicking the interactions of a
canonical P1 substrate residue.
Length = 136
Score = 28.2 bits (63), Expect = 4.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 204 RLRLKYVAADYVPKDGEVLYGNWSRSE 230
R + Y PKD EV Y W E
Sbjct: 103 RYNSRLPIVVYTPKDVEVRYRIWKAGE 129
>gnl|CDD|234468 TIGR04095, dnd_restrict_1, DNA phosphorothioation system
restriction enzyme. The DNA phosphorothioate
modification system dnd (DNA instability during
electrophoresis) recently has been shown to provide a
modification essential to a restriction system. This
protein family was detected by Partial Phylogenetic
Profiling as linked to dnd, and its members usually are
clustered with the dndABCDE genes.
Length = 451
Score = 29.6 bits (67), Expect = 4.8
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 31/95 (32%)
Query: 30 TLRAYQLEGLNWLMFSWF--NGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLT 87
LR YQ E + +WF NGR IL G GKT+ +L
Sbjct: 8 ELRDYQKEAIR----AWFKNNGRG--------------------ILKMATGTGKTLTALA 43
Query: 88 FVDAVFKTGIRGPFLVIAP---LSTIPNWQREFEA 119
+++ LV+ P L W RE E
Sbjct: 44 AASKLYEKIGLLVLLVVCPYQHLVD--QWAREAEK 76
>gnl|CDD|234417 TIGR03958, monoFe_hyd_HmdC, 5,10-methenyltetrahydromethanopterin
hydrogenase cofactor biosynthesis protein HmdC. Members
of this protein family are HmdC, whose gene regularly
occurs in the context of genes for HmdA
(5,10-methenyltetrahydromethanopterin hydrogenase) and
the radical SAM protein HmdB involved in biosynthesis of
the HmdA cofactor. Bioinformatics suggests this protein,
a homolog of eukaryotic fibrillarin, may be involved in
biosynthesis of the guanylyl pyridinol cofactor in HmdA
[Protein fate, Protein modification and repair, Energy
metabolism, Methanogenesis].
Length = 505
Score = 29.3 bits (66), Expect = 4.8
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 57 EMGLGKTIQSLTR-----NCILADEMGLGKTIQSLTFVDAVFKTGIRG 99
E+ +G LT NC+L+D MG + + F D G+R
Sbjct: 62 EIAVGPCASDLTLPDLLGNCMLSDTMGAPIHVCAYAFADIAEAEGMRP 109
>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional.
Length = 342
Score = 29.3 bits (66), Expect = 5.5
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 47 FNGRNCILADEMGLGKTIQSLTRNCILADEMGL 79
F+GR + A +M LGK ++SL R LADE G+
Sbjct: 235 FSGRGELSARQMHLGKFLRSLQR---LADEFGV 264
>gnl|CDD|221912 pfam13086, AAA_11, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 220
Score = 28.9 bits (65), Expect = 5.8
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 284 TMSSGTDGLKSASASRNMLQEYELFFRNDKNQFIKEKDLYKFHV---LITTFEIIISDCL 340
+ LKS ++ L+ R++ + KE + + + ++ +++ +
Sbjct: 105 QLLKRIRKLKSLLEEKSKLKRERRKLRSEIKKLKKELERLRKSIRKEILDEADVVCTTLS 164
Query: 341 --------ELKDFNWRLCIIDEAHRLKNRNCKLLEGLR-LLHLEHRVLLSGTPLQ 386
LK F+ IIDEA + E L LL +V+L G Q
Sbjct: 165 GAGSSLLEGLKKFDV--VIIDEAAQ-----ATEPETLIPLLLGCKKVVLVGDHKQ 212
>gnl|CDD|180530 PRK06328, PRK06328, type III secretion system protein; Validated.
Length = 223
Score = 28.6 bits (64), Expect = 6.5
Identities = 10/51 (19%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 408 EAFMSEFGQLKTESEV--NKLQLLLKPMMLRRLKEDVEKSIAPKEETVVEV 456
+A+ + L+ E++ +++ L P+ + +K+ + K + ET+V +
Sbjct: 70 KAWSKQLAFLEEETQKLREQVKEALVPLAIASVKKIIGKELELHPETIVSI 120
>gnl|CDD|220407 pfam09794, Avl9, Transport protein Avl9. Avl9 is a protein
involved in exocytic transport from the Golgi. It has
been speculated that Avl9 could play a role in deforming
membranes for vesicle fission and/or in recruiting
cargo.
Length = 379
Score = 28.8 bits (65), Expect = 7.6
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 325 FHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTP 384
+ L TF+ + + LE D L + + + ++ K L +LL LE +VL G+P
Sbjct: 140 YENLNATFKSLGGEELEESDLYVGLSLRELVLKFRH---KTLVLFKLLLLEKKVLFYGSP 196
Query: 385 LQNNVNELFSLLNFLE 400
++ N SLL+ +
Sbjct: 197 VERLCNLQMSLLSLIP 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,742,066
Number of extensions: 2672625
Number of successful extensions: 2417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2393
Number of HSP's successfully gapped: 49
Length of query: 513
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 412
Effective length of database: 6,457,848
Effective search space: 2660633376
Effective search space used: 2660633376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.5 bits)