RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14708
(513 letters)
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 77.0 bits (188), Expect = 1e-16
Identities = 37/133 (27%), Positives = 76/133 (57%), Gaps = 4/133 (3%)
Query: 314 NQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLH 373
++ + L + +++TT+ +++ D LK+ W+ +IDEA +KN K+ + ++ L
Sbjct: 93 HEDRSKIKLEDYDIILTTYAVLLRDT-RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELK 151
Query: 374 LEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFGQLKTESE---VNKLQLLL 430
++R+ L+GTP++N V++L+S++ FL P + F S+F + + +L+ ++
Sbjct: 152 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII 211
Query: 431 KPMMLRRLKEDVE 443
P +LRR K D
Sbjct: 212 SPFILRRTKYDKA 224
Score = 68.1 bits (165), Expect = 1e-13
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFV 89
LR YQ++G +W+ F G LAD+MGLGKT+Q++ E
Sbjct: 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN------------ 59
Query: 90 DAVFKTGIRGPFLVIAPLSTIPNWQREFEAWTDLNVIVYH 129
P LVI PLS + NW+ E +
Sbjct: 60 -------ELTPSLVICPLSVLKNWEEELSKFAPHLRFAVF 92
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 68.0 bits (165), Expect = 5e-13
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 439 KEDVEKSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRK 498
+ + K + K E VV LT +QK+ Y+ L++ S T +V + ++++ L+K
Sbjct: 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISV-SSLSSITSLKK 60
Query: 499 CCIHPYLLNGK 509
C HP L+ K
Sbjct: 61 LCNHPALIYEK 71
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 65.9 bits (159), Expect = 2e-12
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 310 RNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGL 369
N ++ +LI ++E L L I DE HRLKN + + L
Sbjct: 156 SKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLAL 215
Query: 370 RLLHLEHRVLLSGTPLQNNVNELFSLLNFLEPQQFSNNEAFMSEFG-------------- 415
++ + RVL+SGTP+QN++ E FSL++F+ + F F
Sbjct: 216 NSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275
Query: 416 -QLKTESEVNKLQLLLKPMMLRR 437
+ E ++ +L ++ ++RR
Sbjct: 276 DRAAGEQKLQELISIVNRCLIRR 298
Score = 65.1 bits (157), Expect = 3e-12
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 30 TLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMGLGKTIQSLTFV 89
LR +Q EG+ +L R + CI+ADEMGLGKT+Q +T +
Sbjct: 55 VLRPHQREGVKFLWDCVTGRRI--------------ENSYGCIMADEMGLGKTLQCITLI 100
Query: 90 DAVFKTGIR-----GPFLVIAPLSTIPNWQREFEAWTDLNVIVYH 129
+ K +V++P S + NW E W V
Sbjct: 101 WTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVA 145
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 53.9 bits (128), Expect = 9e-09
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 449 KEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCCIHPY 504
K ET V LT Q Y+ +E F+ + T +++T+++L++ HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 56
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 45.3 bits (106), Expect = 4e-06
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 444 KSIAPKEETVVEVELTNIQKKYYRGILERNFSFLSKGTTSANVPNLMNTMMELRKCC 500
K +A + V L ++ Y + FL + N ++
Sbjct: 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYD 57
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 42.9 bits (100), Expect = 3e-05
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 270 LLDLAGGDGKSFSPTMSSGTDGLKS----ASASRNMLQEYELFFRNDKNQFIKEKDLYKF 325
+ L G GK+ + + + + + L ++ + +
Sbjct: 89 CIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKEL 148
Query: 326 HVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHRVLLSGTP 384
L + E + L I DE H L + + ++ R+ L+ T
Sbjct: 149 KPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQI--AQMSIAPFRLGLTATF 205
Score = 37.9 bits (87), Expect = 0.001
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 15 DWVKLEKSPVYKNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCIL 73
+ +P + + +LR YQ + L W + + G GKT ++ L
Sbjct: 55 NAADPIPTPYFDAEISLRDYQEKALER----WLVDKRGCIVLPTGSGKTHVAMAAINEL 109
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 35.6 bits (81), Expect = 0.009
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 318 KEKDLYKFHVLITTFEIIISDCLELKDF--NWRLCIIDEAHRLKNRNC-KLLEGLRLLHL 374
KD + + + K++ + + + DE H ++ ++ L +
Sbjct: 195 ASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIIS--GLNNC 252
Query: 375 EHRVLLSGTPLQNNVNEL 392
+ LSG+ N +
Sbjct: 253 MFKFGLSGSLRDGKANIM 270
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 31.3 bits (69), Expect = 0.20
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 26 KNDNTLRAYQLEGLNWLMFSWFNGRNCILADEMGLGKTIQSLTRNCILADEMG 78
++ R YQ NC++ GLGKT+ ++ + G
Sbjct: 5 RDLIQPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG 52
Score = 29.4 bits (64), Expect = 0.73
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 5/132 (3%)
Query: 258 GWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQFI 317
G T + L GG +PT +S N+ E + +K+
Sbjct: 35 GKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE 94
Query: 318 KEKDLYKFHVLITTFEIIISDCL--ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLE 375
+ K + V++ T + I +D L + + L + DEAHR +
Sbjct: 95 RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154
Query: 376 ---HRVLLSGTP 384
+ L+ +P
Sbjct: 155 KNPLVIGLTASP 166
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 30.5 bits (69), Expect = 0.52
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 153 AVFKTGIRGPFLVIAPLSTIPNW--QREFEAWTDLNVIVYHG 192
VFKT P ++IA + +P+W F + +Y
Sbjct: 87 GVFKTHSNAPRVLIANSNLVPHWANWEHFNELDAKGLAMYGQ 128
Score = 29.8 bits (67), Expect = 0.90
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 91 AVFKTGIRGPFLVIAPLSTIPNW--QREFEAWTDLNVIVYH 129
VFKT P ++IA + +P+W F + +Y
Sbjct: 87 GVFKTHSNAPRVLIANSNLVPHWANWEHFNELDAKGLAMYG 127
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 29.6 bits (66), Expect = 0.65
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 320 KDLYKFHVLITTFEIIISDCLELKDFNW---RLCIIDEAHRL--KNRNCKLLEGLRLLHL 374
K L ++++ T I+ D + N + I+DEA + + + L +
Sbjct: 117 KALKNANIVVGTPGRIL-DHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 175
Query: 375 EHRVLL-SGTPLQNNVNEL 392
+ R+LL S T + + L
Sbjct: 176 DKRILLFSAT-MPREILNL 193
>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 195
Score = 29.5 bits (66), Expect = 0.69
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 330 TTFEIIISDCLELKDFNWRLCI--IDEAHRLK-----NRNCKLLEG----LRLLHLEHRV 378
+T EI L F WRL I + E+ R +LEG LR+ E
Sbjct: 22 STEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGMRLRVDGAESAP 81
Query: 379 LLSGTPL 385
L +
Sbjct: 82 LRARQAF 88
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 28.7 bits (63), Expect = 0.80
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 6/94 (6%)
Query: 296 SASRNMLQEYELFFRNDKNQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEA 355
+A+ D N + + + + + + I DE
Sbjct: 44 AATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDEC 103
Query: 356 HRLKNRNCKLLEGLRLLHLEHR-----VLLSGTP 384
H L G L E VL + TP
Sbjct: 104 HSTD-ATSILGIGTVLDQAETAGARLVVLATATP 136
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 28.7 bits (63), Expect = 1.3
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 314 NQFIKEKDLYKFHVLITTFEIIISDCLELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLH 373
+ ++L F ++ITT + + EL F +D+ + + + + L LL
Sbjct: 132 EKENFMQNLRNFKIVITTTQFLSKHYRELGHF--DFIFVDDVDAILKASKNVDKLLHLLG 189
Query: 374 LEHR--------------VLLSGTPLQNNVNELFS-LLNF 398
+ ++ + T + ELF LLNF
Sbjct: 190 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 545
Score = 29.0 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 153 AVFKTGIRGPFLVIAPLSTIPNW--QREFEAWTDLNVIVYHG 192
AVF+T P ++IA + +P W F +I+Y
Sbjct: 79 AVFRTHPDAPRVLIANSNLVPAWATWDHFHELDKKGLIMYGQ 120
Score = 28.2 bits (63), Expect = 2.6
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 91 AVFKTGIRGPFLVIAPLSTIPNW--QREFEAWTDLNVIVYH 129
AVF+T P ++IA + +P W F +I+Y
Sbjct: 79 AVFRTHPDAPRVLIANSNLVPAWATWDHFHELDKKGLIMYG 119
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.7 bits (60), Expect = 1.9
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 341 ELKDFNWRLCIIDEAHRLKNRNCKLLEGLRLLHLEHR---VLLSGTP 384
+ NW + I+DEAH L + + +L++ TP
Sbjct: 93 PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139
Score = 27.3 bits (59), Expect = 2.5
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 48 NGRNCILADEMGLGKTIQSLTRNCILADEMG 78
G +L G GKT + L +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRR 36
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 144
Score = 26.6 bits (59), Expect = 4.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 202 KERLRLKYVAADYVPKDGEVL 222
++ Y DY KD +VL
Sbjct: 12 IPYAKMGYWNPDYQVKDTDVL 32
>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB,
N-terminal domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 207
Score = 26.8 bits (59), Expect = 5.6
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 244 GRWKEFLANNEFRNGWTEEYVEELARLL 271
WK L+ G+ +L L+
Sbjct: 152 EDWK--LSGQILHKGYVYLDKNQLIGLI 177
>d2p3ya1 e.65.1.1 (A:22-482) Hypothetical protein VPA0735 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 461
Score = 27.3 bits (60), Expect = 5.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 256 RNGWTEEYVEELARLLDLAGGDGKSFSPTMSSGTDGLKSASASRNMLQEYELFFRNDKNQ 315
N E +A+L L GK F+PT L+++ R M Q + R +
Sbjct: 231 ENPVEERDRFVMAQLKFLGIEKGKPFNPTEEQKKILLEASKVGRAMAQSNDYTKRFTQPY 290
Query: 316 F 316
+
Sbjct: 291 W 291
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
strain Mahoney [TaxId: 12080]}
Length = 461
Score = 26.9 bits (59), Expect = 7.5
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 81 KTIQSLTFVDAVFKTGIRGPFLVIAPLST-----IPNWQREFEA 119
T +++TF+ F+ + PFL+ + W ++
Sbjct: 366 VTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRN 409
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 24.7 bits (54), Expect = 8.2
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 202 KERLRLKYVAADYVPKDGEVLY 223
+ + +YV + G++ +
Sbjct: 59 RAAGKYLTKGKEYVMESGDIAH 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,990,548
Number of extensions: 95970
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 31
Length of query: 513
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 424
Effective length of database: 1,185,626
Effective search space: 502705424
Effective search space used: 502705424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)