Query psy14715
Match_columns 1147
No_of_seqs 542 out of 3846
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:48:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5m_A Falcilysin; M16 metallo 100.0 2E-113 6E-118 1094.5 82.0 948 143-1134 64-1175(1193)
2 2fge_A Atprep2;, zinc metallop 100.0 3E-101 9E-106 1007.3 86.6 937 140-1134 8-977 (995)
3 3cww_A Insulysin, insulin-degr 100.0 4.3E-77 1.5E-81 779.5 38.6 857 159-1134 28-935 (990)
4 1q2l_A Protease III; hydrolase 100.0 2.6E-74 8.8E-79 749.8 53.5 865 159-1143 14-921 (939)
5 3eoq_A Putative zinc protease; 100.0 1.9E-50 6.5E-55 473.7 23.1 397 166-645 2-404 (406)
6 3ami_A Zinc peptidase; alpha/b 100.0 4.6E-49 1.6E-53 467.9 29.6 407 167-649 8-426 (445)
7 3hdi_A Processing protease; CA 100.0 7.7E-48 2.6E-52 454.2 25.1 400 166-647 2-406 (421)
8 1pp9_A Ubiquinol-cytochrome C 100.0 3.6E-46 1.2E-50 443.1 26.0 405 165-647 13-430 (446)
9 1hr6_B Beta-MPP, mitochondrial 100.0 2.4E-45 8.2E-50 436.1 25.6 404 165-647 6-430 (443)
10 3gwb_A Peptidase M16 inactive 100.0 3E-44 1E-48 425.6 26.1 410 159-647 7-423 (434)
11 3amj_B Zinc peptidase inactive 100.0 5.8E-44 2E-48 421.7 22.4 400 167-647 5-416 (424)
12 1hr6_A Alpha-MPP, mitochondria 100.0 1.1E-43 3.8E-48 424.6 24.3 405 166-645 6-437 (475)
13 3eoq_A Putative zinc protease; 100.0 1.6E-41 5.4E-46 397.9 31.6 385 714-1133 5-405 (406)
14 3go9_A Insulinase family prote 100.0 1.6E-41 5.4E-46 405.4 31.0 397 166-647 26-449 (492)
15 3hdi_A Processing protease; CA 100.0 1.4E-40 4.6E-45 392.2 35.9 387 714-1135 5-407 (421)
16 1pp9_B Ubiquinol-cytochrome C 100.0 1.6E-41 5.5E-46 402.9 25.2 396 165-646 23-431 (439)
17 3cx5_A Cytochrome B-C1 complex 100.0 1.9E-41 6.5E-46 401.3 21.4 390 169-647 4-415 (431)
18 3ami_A Zinc peptidase; alpha/b 100.0 2.5E-39 8.6E-44 384.1 34.7 393 714-1134 10-424 (445)
19 3gwb_A Peptidase M16 inactive 100.0 1.3E-39 4.6E-44 385.7 31.6 392 713-1135 16-424 (434)
20 1hr6_B Beta-MPP, mitochondrial 100.0 7.6E-39 2.6E-43 380.1 36.3 387 714-1134 10-430 (443)
21 3d3y_A Uncharacterized protein 100.0 2.2E-40 7.6E-45 391.4 22.9 386 169-632 6-412 (425)
22 1pp9_A Ubiquinol-cytochrome C 100.0 1.1E-38 3.9E-43 378.5 35.0 386 714-1134 17-430 (446)
23 3amj_B Zinc peptidase inactive 100.0 5.8E-38 2E-42 370.3 33.1 387 714-1133 7-415 (424)
24 1hr6_A Alpha-MPP, mitochondria 100.0 5.1E-37 1.7E-41 367.0 30.5 383 714-1133 9-438 (475)
25 1pp9_B Ubiquinol-cytochrome C 100.0 1.2E-36 4.1E-41 360.9 27.9 383 714-1134 27-432 (439)
26 3d3y_A Uncharacterized protein 100.0 6.6E-36 2.3E-40 353.0 33.8 390 714-1134 6-424 (425)
27 3cx5_A Cytochrome B-C1 complex 100.0 3.9E-35 1.3E-39 347.1 30.1 378 714-1134 4-415 (431)
28 3go9_A Insulinase family prote 100.0 5.1E-35 1.8E-39 349.1 28.7 383 713-1134 28-449 (492)
29 1q2l_A Protease III; hydrolase 100.0 1.9E-31 6.5E-36 346.6 30.0 389 714-1134 24-441 (939)
30 3cx5_B Cytochrome B-C1 complex 100.0 8.2E-32 2.8E-36 309.0 12.0 307 175-579 1-314 (352)
31 3cww_A Insulysin, insulin-degr 100.0 1.3E-29 4.3E-34 331.1 30.8 396 714-1133 38-456 (990)
32 3s5m_A Falcilysin; M16 metallo 100.0 1.1E-28 3.6E-33 315.3 24.3 388 715-1133 91-588 (1193)
33 2fge_A Atprep2;, zinc metallop 100.0 2.9E-28 9.8E-33 317.9 20.4 387 715-1133 42-485 (995)
34 3cx5_B Cytochrome B-C1 complex 99.9 1.6E-27 5.5E-32 273.2 14.3 335 720-1134 1-345 (352)
35 3ih6_A Putative zinc protease; 99.8 2.7E-18 9.2E-23 178.3 14.7 169 960-1133 15-195 (197)
36 3ih6_A Putative zinc protease; 99.7 2.7E-17 9.2E-22 170.8 14.0 174 424-646 21-195 (197)
37 1g6u_A Domain swapped dimer; d 46.2 34 0.0011 23.1 4.2 22 545-566 4-25 (48)
No 1
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.7e-113 Score=1094.54 Aligned_cols=948 Identities=24% Similarity=0.364 Sum_probs=822.7
Q ss_pred cCccccCeEeeeeeeccccceeeeEEEEecccceEEEeecCCCC---ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCC
Q psy14715 143 EGAEVEGFLVKNVTPIPEFQMTAIKLQHVKTLAEYFHLSRDDSN---NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYP 219 (1147)
Q Consensus 143 ~~~~~~~f~v~~~~~~~~~~~~~~~~~~l~NG~~v~~~~~~~~~---~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~ 219 (1147)
.|...+||++++...+|+++++.+++.|++||++|+++++++++ .+|.+|++++|.+..|+|||+|||+||||++||
T Consensus 64 ~~~~~~~f~~~~~~~~p~~~~~~~~~~~l~nGl~vl~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p 143 (1193)
T 3s5m_A 64 KSPKHNSYDIIEKRYNEEFKMTYTVYQHKKAKTQVISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYN 143 (1193)
T ss_dssp GSCCCTTEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBC
T ss_pred cCCccCCeEEEEeccCCCccccceEEEECCCCCEEEEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHhCCCCCCC
Confidence 46678899999999999999999999999999999999999863 679999999999999999999999999999999
Q ss_pred CCChHHHHHhhhcCCCCccccCCCcceeecccCCHHHHHHHHHHHhhhccCCCCCccc--ccccceeeeccCccCC----
Q psy14715 220 CRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLD--FMQEGWRLEHEDIKDQ---- 293 (1147)
Q Consensus 220 ~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~--~~~e~~~~~~~~~~~~---- 293 (1147)
.++++.++..+++|+++||+|+.|+|+|++.+.+.++++++|++++|++++|.|++++ |.+|+||++++...++
T Consensus 144 ~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~ 223 (1193)
T 3s5m_A 144 YKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGK 223 (1193)
T ss_dssp CTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTC
T ss_pred hhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhcc
Confidence 9998877776678889999999999999988888899999999999999999999998 9999999998753222
Q ss_pred -------CCCceeeeEEEecccccCCChhHHHHHHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEE
Q psy14715 294 -------NSPIIFKGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKF 366 (1147)
Q Consensus 294 -------~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~l 366 (1147)
.+++.+|++|++||++..++|..++.+.+.+.+||+|||+++++|++++|.++++++|++||++||+|+||+|
T Consensus 224 ~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l 303 (1193)
T 3s5m_A 224 AEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKV 303 (1193)
T ss_dssp TTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEE
T ss_pred ccccccccchhhHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHhHhhhccCCCCCCCCC-CCcCCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCC----CC
Q psy14715 367 FSYGNFNLEDHLSFINTNYLSKINPYQHHRS-STAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVM----DN 441 (1147)
Q Consensus 367 vi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~----~~ 441 (1147)
+++||+|++++++++++ +|+.|+.....+. .+..+..+++..|+.+.+..+.. .+..++.+.++|++|.. .+
T Consensus 304 ~v~Gdid~~~~~~~v~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~q~~l~~~~~~~~~~~~~~d 380 (1193)
T 3s5m_A 304 FFFSKNNPTELLNFVDQ-YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDH--SEEKENLVSVAWLLNPKVDKTNN 380 (1193)
T ss_dssp EEEESSCTHHHHHHHHH-HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECC--CSSCCEEEEEEEESSCBCC----
T ss_pred EEEecCCHHHHHHHHHH-HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCC--CCccccEEEEEEEecCccccccc
Confidence 99999999999999997 9999986542111 01123345566676666543321 23678999999999853 22
Q ss_pred -----------------------------HHHHHHHHHHHHHhcCCCChHhhHHHHhcCCCCCccccccccCCCcceEEE
Q psy14715 442 -----------------------------FKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYEASIHDTLFT 492 (1147)
Q Consensus 442 -----------------------------~~~~~~l~vl~~iL~~~~~s~L~~~lre~~~~~~~s~~~~~~~~~~~~~~~ 492 (1147)
.++.+++.+|+.+|+||.+|||+++||++|++.+++ .+++......+.|.
T Consensus 381 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~-~~~~~~~~~~~~f~ 459 (1193)
T 3s5m_A 381 HNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVI-DRGLNDSLVQYIFS 459 (1193)
T ss_dssp ------------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEE-EEEEECSSSSCEEE
T ss_pred ccccccccccccccccccccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeec-ccccccccCCcEEE
Confidence 478999999999999999999999999988875543 25677777778999
Q ss_pred EEEeCCCCCc--------H-HHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHHHcCCCHHHH
Q psy14715 493 VGLQGVDSNK--------F-DEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERV 563 (1147)
Q Consensus 493 i~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el 563 (1147)
++++++++++ . +++++ .|.++|++++++||+++|+
T Consensus 460 i~~~g~~~~~~~~~~~~~~~~~~~~------------------------------------~I~~~L~~l~~~gi~~~el 503 (1193)
T 3s5m_A 460 IGLKGIKRNNEKIKNFDKVHYEVED------------------------------------VIMNALKKVVKEGFNKSAV 503 (1193)
T ss_dssp EEEEEECTTCTTCSCGGGHHHHHHH------------------------------------HHHHHHHHHHHHCCCHHHH
T ss_pred EEEecCChhhccccchhhHHHHHHH------------------------------------HHHHHHHHHHHcCCCHHHH
Confidence 9988887754 4 57777 9999999999999999999
Q ss_pred HHHHHHHHhhhhcc--cCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHhccCCCeEEEE
Q psy14715 564 ASVLHSLELSLKHQ--SSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNNPHKLIIT 641 (1147)
Q Consensus 564 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 641 (1147)
++++++++.++++. ....|+.++..++..|++++||...+.+.+.++++++.+..++.++++++++||.+|+|+++++
T Consensus 504 e~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~ 583 (1193)
T 3s5m_A 504 EASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVIL 583 (1193)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEE
Confidence 99999999999875 3467778888889999999999999999999999998765457899999999998788999999
Q ss_pred EecCcChHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhc---cccCCCCCCCcCCCCCCCcccccccee----
Q psy14715 642 MSPEKTFDEKLDKVEKDILKDRISQMNDQDLNKVYVNGTELRKEQE---KEQNIDVLPTLKISDVDDHVERVVTTD---- 714 (1147)
Q Consensus 642 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~lp~l~~~di~~~~~~~~~~~---- 714 (1147)
+.|++.+.++.+++++++|++++++||+++++++++++.+++++|. .++++++||.++++|||.+++.+|...
T Consensus 584 ~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~~~~~~~~~ 663 (1193)
T 3s5m_A 584 LEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEVPVNVYFTN 663 (1193)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEEEC
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCcCcHHHcCCCcccCcccccccc
Confidence 9999999999999999999999999999999999999999988877 456688999999999998777666552
Q ss_pred ----------------------------------------------------------eeecCccEEEEecCCCCeEEEE
Q psy14715 715 ----------------------------------------------------------KHILQVPIQLSTQPTNGVTYFR 736 (1147)
Q Consensus 715 ----------------------------------------------------------~~~NG~~v~~~~~~~~~~v~~~ 736 (1147)
...||++|++++.++++++|++
T Consensus 664 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~TNGIvY~~ 743 (1193)
T 3s5m_A 664 INENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMPTTGIVYLQ 743 (1193)
T ss_dssp TTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEEEECCCTTEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCeEEEEEECCCCCeEEEE
Confidence 0127999999999999999999
Q ss_pred EEEeCCCCCCCccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeeccCCCC-----CCcceeEEEEEEEecc
Q psy14715 737 SVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGESCST-----PNGFEEAILVSSHCLE 811 (1147)
Q Consensus 737 l~~~~g~~~~~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~~~~~-----~~~~~~~~~i~~~~l~ 811 (1147)
++|+.|.+++++.++++||+.+|...||+++++.|+.+.++.++||+++++++.++.++ .+...+++.++++|+.
T Consensus 744 l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~ 823 (1193)
T 3s5m_A 744 FVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLS 823 (1193)
T ss_dssp EEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEG
T ss_pred EEEECCCCCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceEEEEEEEhh
Confidence 99999999988899999999999989999999999999999999999999986543321 1223788999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCchhhhhhHhcchhHHHHHHHHhc
Q psy14715 812 HNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQ 891 (1147)
Q Consensus 812 ~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~ 891 (1147)
++++++++|+.+++++|.|++.+++++++.+.++++.+.+.++||.+|+.++.+.+++.+++.+.++|++++.+|+++.+
T Consensus 824 ~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~~fl~~l~~ 903 (1193)
T 3s5m_A 824 HKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLE 903 (1193)
T ss_dssp GGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHHHHHHHHHH
Confidence 99999999999999999998788999999999999999999999999999999999999999999999999999998643
Q ss_pred C--CChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC--CChHHHHHHHhhcCCC----CCC----------CC-CCCcc--
Q psy14715 892 S--PKLENILQDIQSIGAHVLRKDSMRCALNMSAQ--SNAPERLESFLQSIPG----DFT----------SQ-PGQTV-- 950 (1147)
Q Consensus 892 ~--~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~--~~~~~~v~~~~~~l~~----~~~----------~~-~~~~~-- 950 (1147)
. .+++.+.++|+++++++|+++|+.+.++|+.+ +++.+.++++++.|+. ... .. .....
T Consensus 904 ~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (1193)
T 3s5m_A 904 LAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEE 983 (1193)
T ss_dssp HHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccc
Confidence 2 24778899999999999999999999999986 6666666666665531 000 00 00000
Q ss_pred ----cccccCccceeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhcCccchhhHhccCCccccccccCCCceEEE
Q psy14715 951 ----HSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSPSGVIQF 1026 (1147)
Q Consensus 951 ----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~srL~~~lRek~gaY~v~~~~~~~g~~~~ 1026 (1147)
..+......+..+..|.+++|++++++....+++|++++.|++.|||+++||++||||+||||++|++...|.|.|
T Consensus 984 ~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgGAYg~~s~~~~~G~f~~ 1063 (1193)
T 3s5m_A 984 IKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADIEYDGSVVF 1063 (1193)
T ss_dssp HHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTCCSEEEEEECTTSEEEE
T ss_pred cccccccccccccceeEecCCcceEEEEEecCCCCCCCchHHHHHHHHHHCccHHHHHHHhcCCeeEEEEeccCCCcEEE
Confidence 0111111156778889999999999999999999999999999999999999999999999999999877899999
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHhhhhccCCCC---hhhHHHHHHHcCCCHHHHHHHHHHHhc
Q psy14715 1027 YSYRDPYALETLATFDQSTQFLAD--TKLSVQDLDEAKLGVFKEVDAPIP---PGSKGMSKFLYGKTDEMIEQYRLSVKQ 1101 (1147)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~l~~l~~--~~ite~el~~aK~~l~~~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~i~~ 1101 (1147)
++|++|+..++++++.++++++.+ .++|++||++||.+++++++++.+ .+..++..+++|++.++++++++.|.+
T Consensus 1064 ~syrdp~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d~p~~p~~~a~~~~~~~~~Gl~~d~~~~~~~~I~a 1143 (1193)
T 3s5m_A 1064 LSARDPNLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTIDKPRRGIELSKLSFLRLISNESEQDRVEFRKRIMN 1143 (1193)
T ss_dssp EEESBSCSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHSCCCCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHcCcCHHHHHHHHHHHHc
Confidence 999999999999999999999987 589999999999999999998888 555667788999999999999999999
Q ss_pred CCHHHHHHHHHHhhcc---ccccCCCeEEEEcCCCC
Q psy14715 1102 VTEDDIRRVADTYLSR---DATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1102 vT~edi~~~a~k~l~~---~~~~~~~~~~vvG~~~~ 1134 (1147)
||++||+++|++|+.+ ++. .++|||++.+
T Consensus 1144 VT~edv~~vA~~~~~~l~~~~~----~~vvvG~~~~ 1175 (1193)
T 3s5m_A 1144 TKKEDFYKFADLLESKVNEFEK----NIVIITTKEK 1175 (1193)
T ss_dssp CCHHHHHHHHHHHHHTHHHHTT----EEEEEECHHH
T ss_pred CCHHHHHHHHHHHhhhhcccCc----eEEEEcCHHH
Confidence 9999999999999987 345 7999999764
No 2
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.5e-101 Score=1007.28 Aligned_cols=937 Identities=29% Similarity=0.460 Sum_probs=789.2
Q ss_pred ccc-cCc---cccCeEeeeeeeccccceeeeEEEEecccceEEEeecCCCCceEEEEecCCCCCCCCchHHHHHHHhcCC
Q psy14715 140 SFE-EGA---EVEGFLVKNVTPIPEFQMTAIKLQHVKTLAEYFHLSRDDSNNVFAVAFRTPPPDSTGITHILEHLSLCGS 215 (1147)
Q Consensus 140 ~~~-~~~---~~~~f~v~~~~~~~~~~~~~~~~~~l~NG~~v~~~~~~~~~~~~~~G~~~e~~~~~G~ah~leh~~~~Gs 215 (1147)
.+| .|+ .++||++++...+|+++.+.+++.||+||++|+++++++.+.+|.+|+++||.+..|+|||+|||+|+||
T Consensus 8 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~nGl~v~~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt 87 (995)
T 2fge_A 8 LYPDVGQDEAEKLGFEKVSEEFISECKSKAILFKHKKTGCEVMSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGS 87 (995)
T ss_dssp -------CHHHHTTEEEEEEEEETTTTEEEEEEEETTTCCEEEEEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCB
T ss_pred cCCCCCCCcceeCCeEEEEEEecccccceEEEEEECCCCCEEEEEEcCCCccEEEEEeCCCCcCCCChHHHHHHHHhCCC
Confidence 445 788 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHhhhcCCCCccccCCCcceeecccCCHHHHHHHHHHHhhhccCCCC--CcccccccceeeeccCccCC
Q psy14715 216 VKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQL--KQLDFMQEGWRLEHEDIKDQ 293 (1147)
Q Consensus 216 ~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~--~~~~~~~e~~~~~~~~~~~~ 293 (1147)
++||..+.+.+++.+++|+++||+|+.|+|+|++.+.+.++++++|++++|++++|.| ++++|++|+||++.+..
T Consensus 88 ~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~--- 164 (995)
T 2fge_A 88 RKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDP--- 164 (995)
T ss_dssp TTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCT---
T ss_pred CCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccc---
Confidence 9999999888988888899999999999999988877789999999999999999999 99999999999998763
Q ss_pred CCCceeeeEEEecccccCCChhHHHHHHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCC
Q psy14715 294 NSPIIFKGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFN 373 (1147)
Q Consensus 294 ~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~ 373 (1147)
.+++.+|++|++||++..++|..++.+.+.+.+|++|||+++++|++++|+++++++|++||++||+|+||+|+|+||+|
T Consensus 165 ~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d 244 (995)
T 2fge_A 165 SEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDD 244 (995)
T ss_dssp TSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSC
T ss_pred cccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhccCC--CCCCCCCCCcCCCCCCCCCCceEEEeccCCC-CCCCCcceEEEEEEccCCC-CHHHHHHHH
Q psy14715 374 LEDHLSFINTNYLSKIN--PYQHHRSSTAVLPEPAWDKPRQLHIHGRHDP-LASENQSHIAIAYKCAVMD-NFKDVFVLN 449 (1147)
Q Consensus 374 ~~~~~~~i~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~~~~~~~~-~~~~~~~l~ 449 (1147)
+++++++|++ +|++|+ ....+.. .+..+++..+........... ..+.+++.+.++|++|... +.++.+++.
T Consensus 245 ~~~~~~~i~~-~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 320 (995)
T 2fge_A 245 PVHRLRVLSE-YLDMFEASPSPNSSK---IKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALG 320 (995)
T ss_dssp HHHHHHHHHH-HHTTCCCCSHHHHSC---CCCCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHH-HHhhCCccccCCCcc---cCCCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHH
Confidence 9999999997 999998 4321111 222345555543332222211 1225789999999999877 568999999
Q ss_pred HHHHHhcCCCChHhhHHHHhcCCCCCcccccc-ccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhh
Q psy14715 450 ILGDLLLKGPNAPFYKNLVESGLGLSFSPVTG-YEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528 (1147)
Q Consensus 450 vl~~iL~~~~~s~L~~~lre~~~~~~~s~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1147)
+++.+|+++.+|||++.||++|+++ +++++ +......+.|.+++.++++++.+++++
T Consensus 321 vl~~~Lg~~~~S~L~~~l~e~gl~~--~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~-------------------- 378 (995)
T 2fge_A 321 FLDHLMLGTPASPLRKILLESGLGE--ALVSSGLSDELLQPQFGIGLKGVSEENVQKVEE-------------------- 378 (995)
T ss_dssp HHHHHHHSSTTSHHHHHHHHTTSCS--EECSCEEECSSSSCEEEEEEEEECGGGHHHHHH--------------------
T ss_pred HHHHHHcCCCCCHHHHHHHhcCCCc--ceeeccccccccCeEEEEEEEeCCHHHHHHHHH--------------------
Confidence 9999999999999999999987764 44444 554455788888766788999999998
Q ss_pred hcccCCCCcchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhcccC---CchHHHHHHhhhhhccCCChhHhhhH
Q psy14715 529 IGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSS---NFGLNLLFWLVPFMNHDCDVIHLLHI 605 (1147)
Q Consensus 529 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 605 (1147)
.+.++|++++++||+++|+++++++++.++..... ..+..++..++..|++++++.....+
T Consensus 379 ----------------~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (995)
T 2fge_A 379 ----------------LIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKY 442 (995)
T ss_dssp ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCC
T ss_pred ----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhh
Confidence 99999999999999999999999999999876432 24445677888888888887777777
Q ss_pred HHHHHHHHHHhhcCcc----HHHHHHHHHhccCCCeEEEEEecCcChHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy14715 606 NDRLNWFKKHIQENPT----YLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDRISQMNDQDLNKVYVNGTE 681 (1147)
Q Consensus 606 ~~~~~~l~~~~~~~~~----~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 681 (1147)
.+.++.+++.+ +.+ +|++++++||.++++++++++.|+........+.|++++++++..++++++++++++...
T Consensus 443 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 520 (995)
T 2fge_A 443 TEPLKALKTRI--AEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEE 520 (995)
T ss_dssp HHHHHHHHHHH--HHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78888887743 235 799999999985567888999999988877788899999999999999999999999888
Q ss_pred HHHHhccc---cCCCCCCCcCCCCCCCccccccceeeeecCccEEEEecCCCCeEEEEEEEeCCCCCCCccccchhHHHH
Q psy14715 682 LRKEQEKE---QNIDVLPTLKISDVDDHVERVVTTDKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYV 758 (1147)
Q Consensus 682 l~~~~~~~---~~~~~lp~l~~~di~~~~~~~~~~~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~~~~~~~~l~~~l 758 (1147)
+++++..+ +....+|.....+++....++|......||++|++++.++++++++.++++.|+++++..+++++++++
T Consensus 521 l~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~ 600 (995)
T 2fge_A 521 LKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQS 600 (995)
T ss_dssp HHHHHTSCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEESSSSEEEEEECCCSSEEEEEEEEECTTSCTTTGGGHHHHHHH
T ss_pred HHHHhcCCCChHHHHhcCCCCHhhcCccCCCCCceeeecCCceEEEEecCCCCeEEEEEEeeCCCCCHHHhhhHHHHHHH
Confidence 88887643 335677777666776655566767677899999999999999999999999999888888999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHhhccceEE-EeeeccCCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCChh-HH
Q psy14715 759 INQMRTKNYDFREMDQLIHMSTGGISF-NSHLGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLN-RF 836 (1147)
Q Consensus 759 l~~~Gt~~~s~~el~~~ie~~g~~l~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~~~-~~ 836 (1147)
|+..||+++++.++.+.++...|++++ ++++.. .+.+.+++++.|+++|++++++.++++|.+++++|.| +.+ ++
T Consensus 601 l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f-~~~~~~ 677 (995)
T 2fge_A 601 LLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSV--RGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQF-TDQQRF 677 (995)
T ss_dssp HHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEE--TTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCS-CCHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHhcCceEeecccccc--CccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCC-CcHHHH
Confidence 997799999999999999988888888 443221 1111235889999999999999999999999999999 455 99
Q ss_pred HHHHHHHHHHhhcccCcCcHHHHHHHHhccCCchhhhhhHhcchhHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCC
Q psy14715 837 TTLVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQS--PKLENILQDIQSIGAHVLRKDS 914 (1147)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~--~~~~~~~~dl~~~~~~~~~~~n 914 (1147)
+.++.+.++++.+...+++|.++...+...+++.+++.+...|+.++.+++++.+. .+++.+.++|++||+++|++++
T Consensus 678 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i~~~L~~~~~~~~~~~~ 757 (995)
T 2fge_A 678 KQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNG 757 (995)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCcCC
Confidence 99999999998887777899999999988888888888888888887777655321 2356678999999999999999
Q ss_pred cEEEEEeCCC--CChHHHHHHHhhcC-CCCCCCCCCCcccccccCccceeEEEecccccEEEEEecCCCCCCCchhHHHH
Q psy14715 915 MRCALNMSAQ--SNAPERLESFLQSI-PGDFTSQPGQTVHSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKV 991 (1147)
Q Consensus 915 ~~l~v~Gd~~--~~~~~~v~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~v 991 (1147)
++++|+||++ +++.++++++|+.+ |....+.. ...++... ....+..+.++.++..+++.+++++++++++.|
T Consensus 758 ~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~---~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~v 833 (995)
T 2fge_A 758 CIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLV---TWDGRLPL-RNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYV 833 (995)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSC---CCCCCCCC-CCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHH
T ss_pred cEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCC---cccccCCc-cceEEEecCceEEEEEecCCCCCCCcccHHHHH
Confidence 9999999998 78899999999999 75433211 11111111 234455677778887777777899999999999
Q ss_pred HHHhhcCccchhhHhccCCccccccccCCCceEE-EEEeeCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc
Q psy14715 992 LSKFLTTKYLLREVREKNGAYGAGAVVSPSGVIQ-FYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD 1070 (1147)
Q Consensus 992 l~~iLg~srL~~~lRek~gaY~v~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~ 1070 (1147)
++.+||+++||++||+++|+|++++++...|.++ |++|++|+..++++++.++++++.+.++|++||++||.+++++++
T Consensus 834 l~~iLg~~~L~~~iRe~g~aYg~~s~~~~~G~~~~~~s~~dp~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~ 913 (995)
T 2fge_A 834 ISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVD 913 (995)
T ss_dssp HHHHHHHTHHHHHTTTTTCCSEEEEEEETTTTEEEEEEESBSCSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCccHHHhhhcCCCcccceEeCCCccEEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Confidence 9999998899999999666999999887789999 999999999999999999999998889999999999999999998
Q ss_pred CCCChhhHHHH---HHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-ccccCCCeEEEEcCCCC
Q psy14715 1071 APIPPGSKGMS---KFLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSR-DATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1071 ~~~~~~~~~~~---~~~~g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~-~~~~~~~~~~vvG~~~~ 1134 (1147)
.+.++.+.+.. .++.|.+.++.+++++.|.+||++||+++|++|+.+ .+. +++|+|+.++
T Consensus 914 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~----~~~vvG~~~~ 977 (995)
T 2fge_A 914 SYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKG----VAVAVASAED 977 (995)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC----EEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccC----CEEEECCHHH
Confidence 88777665543 347899999999999999999999999999999986 444 7999999654
No 3
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=4.3e-77 Score=779.53 Aligned_cols=857 Identities=13% Similarity=0.136 Sum_probs=628.7
Q ss_pred cccceeeeEEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcC
Q psy14715 159 PEFQMTAIKLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMA 233 (1147)
Q Consensus 159 ~~~~~~~~~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g 233 (1147)
|..+-..++..+|+||++|++++++..+ ++|++|+++||.+..|+|||||||+|+||++||..+.|.+++++ .|
T Consensus 28 ~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~-~G 106 (990)
T 3cww_A 28 SPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSE-HA 106 (990)
T ss_dssp CTTCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHT-TT
T ss_pred CCCCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHH-cC
Confidence 3345567788899999999999999876 35889999999999999999999999999999987779999987 67
Q ss_pred CCCccccCCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCC
Q psy14715 234 TFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSD 313 (1147)
Q Consensus 234 ~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ 313 (1147)
+++||+|+.|+|+|++.+ +.++++.+|++++|++.+|.|++++|++| |++|.+|++++.++
T Consensus 107 g~~NA~T~~d~T~y~~~~-~~~~l~~~l~~~~d~~~~p~f~~~~~~~E------------------~~~V~~E~~~~~~~ 167 (990)
T 3cww_A 107 GSSNAFTSGEHTNYYFDV-SHEHLEGALDRFAQFFLSPLFDESAKDRE------------------VNAVDSEHEKNVMN 167 (990)
T ss_dssp CEEEEEECSSCEEEEEEE-EGGGHHHHHHHHHGGGTCBCCCHHHHHHH------------------HHHHHHHHHHHHTC
T ss_pred CceeEEECCCceEEEEEe-CHHHHHHHHHHHHHHHhCcCCCHHHHHHH------------------HHHHHHHHHhccCC
Confidence 789999999999997755 56799999999999999999999999999 99999999998889
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCcccccCC-------ChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhh
Q psy14715 314 NSYIFGEALMNNILPTYCYKHVSGGDPIKILNL-------KYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYL 386 (1147)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~~-------~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f 386 (1147)
|..++.+.+...+|++|||+++++|++++|.++ ++++|++||++||+|+||+|+|+||+|+++++++|++ +|
T Consensus 168 ~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~-~f 246 (990)
T 3cww_A 168 DAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVK-LF 246 (990)
T ss_dssp HHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHH-Hh
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999997 99
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCC--ceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcC-CCChHh
Q psy14715 387 SKINPYQHHRSSTAVLPEPAWDKP--RQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLK-GPNAPF 463 (1147)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~-~~~s~L 463 (1147)
+.|+....+.+ ....+++... ....... ...+++.+.++|+.|...+..+..++.+++.+|++ +.+|+
T Consensus 247 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl- 317 (990)
T 3cww_A 247 SEVENKNVPLP---EFPEHPFQEEHLKQLYKIV-----PIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSL- 317 (990)
T ss_dssp TTSCCCCCCCC---CCCSCSSCGGGSSEEEEEC-----CSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCH-
T ss_pred cCCccCCCCCC---CCCCCCCChHHcCeEEEEE-----ECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcH-
Confidence 99987632211 1111122111 1212211 12468899999999987654567889999999986 66665
Q ss_pred hHHHHhcCCCCCccccccccC-CCcceEEEEEEeCCCC--CcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchH
Q psy14715 464 YKNLVESGLGLSFSPVTGYEA-SIHDTLFTVGLQGVDS--NKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFD 540 (1147)
Q Consensus 464 ~~~lre~~~~~~~s~~~~~~~-~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1147)
+..||++|++ |++++++.. ....+.|.+++..+++ ++.+++++
T Consensus 318 ~~~Lr~~g~~--~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~~~~~-------------------------------- 363 (990)
T 3cww_A 318 LSELKSKGWV--NTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIIL-------------------------------- 363 (990)
T ss_dssp HHHHHHTTSC--SCEEEEEEEEETTEEEEEEEEECCHHHHHTHHHHHH--------------------------------
T ss_pred HHHHHHCCCc--ceeeeccccCCCCccEEEEEEEEChHHhhhHHHHHH--------------------------------
Confidence 5599988776 444444443 2345889998853333 47788888
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCc
Q psy14715 541 EIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENP 620 (1147)
Q Consensus 541 ~~~~~i~~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 620 (1147)
.+.++|+++++.|++++++++++......+..........++..+.. ++++.++.+.+.+...++.+ |+
T Consensus 364 ----~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~------t~ 432 (990)
T 3cww_A 364 ----HMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAG-ILHYYPLEEVLTAEYLLEEF------RP 432 (990)
T ss_dssp ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH-HTTTSCGGGTTTTTTCCCCC------CH
T ss_pred ----HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHH-HHhhCCHHHHhccchhhhcC------CH
Confidence 99999999999999999999988777776654322233356666644 44556777655444444444 55
Q ss_pred cHHHHHHHHHhccCCCeEEEEEecCcChHHHHHHHHHH-HHHHHHhhCCHHHHHHHHHHHHHHHHHhccccCCCCCCC-c
Q psy14715 621 TYLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKD-ILKDRISQMNDQDLNKVYVNGTELRKEQEKEQNIDVLPT-L 698 (1147)
Q Consensus 621 ~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lp~-l 698 (1147)
++|+++++. +..+ +..++++.|.... ...+.+++ .++..+..++++.++.+.+.... ++ +..|++...+|. +
T Consensus 433 ~~i~~~~~~-l~~~-~~~~~~~~p~~~~--~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~-~~-~~~p~~~~~ip~~~ 506 (990)
T 3cww_A 433 DLIEMVLDK-LRPE-NVRVAIVSKSFEG--KTDRTEEWYGTQYKQEAIPDAVIAKWQNAALN-GK-FKLPTKNEFIPTNF 506 (990)
T ss_dssp HHHHHHHTT-CSGG-GCEEEEECGGGTT--CCCEECTTTCCEEEEEECCHHHHHHHHTCCCC-TT-CCCCCCCTTCCCCC
T ss_pred HHHHHHHHh-cCHh-HEEEEEEcCCCCC--CcCcccceeCceeeeecCCHHHHHHhhcCCCC-cc-ccCCCCCCCCCccc
Confidence 999999986 4423 3456666775321 10011111 11112234566555544322111 01 223333445555 5
Q ss_pred CCCCCCCccccccceeeeecCccEEEEecCC----CCeEEEEEEEeCCCCCCCccccchhHHHHHhhcCCCCCCHHHHHH
Q psy14715 699 KISDVDDHVERVVTTDKHILQVPIQLSTQPT----NGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQ 774 (1147)
Q Consensus 699 ~~~di~~~~~~~~~~~~~~NG~~v~~~~~~~----~~~v~~~l~~~~g~~~~~~~~~~~l~~~ll~~~Gt~~~s~~el~~ 774 (1147)
.+.+++......|..+.+.||++||+++.++ .+.+++.+.++.+..+++..++++++..++... ++..++..
T Consensus 507 ~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~----~~~~~~~~ 582 (990)
T 3cww_A 507 EILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS----LNEYAYAA 582 (990)
T ss_dssp CCCCCCTTCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred ccccCCCCCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH----HHHhhhHH
Confidence 5444442234456666788999999999875 445566666566555556667788999988842 34555555
Q ss_pred HHHhhccceEEEeeeccCCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcC
Q psy14715 775 LIHMSTGGISFNSHLGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGN 854 (1147)
Q Consensus 775 ~ie~~g~~l~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1147)
.+ .|.+++++++ .+++.+++++++++++.+++++.+++.+|.| +.++++.++.+.+..+.+...+.
T Consensus 583 ~l--~G~~~~~~~~-----------~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~-~~~~f~~~k~~~~~~~~~~~~~~ 648 (990)
T 3cww_A 583 EL--AGLSYDLQNT-----------IYGMYLSVKGYNDKQPILLKKIIEKMATFEI-DEARFEIIKEAYMRSLNNFRAEQ 648 (990)
T ss_dssp HH--TTEEEEEEEE-----------TTEEEEEEEEESTTHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHGGGSC
T ss_pred Hh--CCeEEEEEEc-----------CCeEEEEEEeccHhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhhhhcC
Confidence 44 2444444443 5689999999999999999999999999999 78999999999999998877667
Q ss_pred cHHHHHHHHhccCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHH---
Q psy14715 855 GHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPER--- 930 (1147)
Q Consensus 855 ~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~--- 930 (1147)
++.++...+...+++..+ .....++.|++++ .++|++|++++|++.++.++|+||++ +++.++
T Consensus 649 p~~~a~~~~~~~l~~~~~-----~~~~~~~~l~~lt--------~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~ 715 (990)
T 3cww_A 649 PHQHAMYYLRLLMTEVAW-----TKDELKEALADVT--------LPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQM 715 (990)
T ss_dssp HHHHHHHHHHHHHBSSCC-----CHHHHHHHHTTCC--------HHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCC-----CHHHHHHHHhcCC--------HHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHH
Confidence 888888877776664322 2223455666665 79999999999999999999999999 888777
Q ss_pred HHHHhhcCCCCCCCCC-C-Ccccccc-cCccceeEE--EecccccEE-EEEecCCCCCCCchhHHHHHHHhhcCccchhh
Q psy14715 931 LESFLQSIPGDFTSQP-G-QTVHSFN-VSGIQKVSH--VLPFPVNFT-AKSLRGVPFLHKDYVALKVLSKFLTTKYLLRE 1004 (1147)
Q Consensus 931 v~~~~~~l~~~~~~~~-~-~~~~~~~-~~~~~~~~~--~~~~~~~~v-~~~~~~~~~~~~d~~al~vl~~iLg~srL~~~ 1004 (1147)
+.++++.++......+ . .....+. +.. ....+ ..+..+.++ .+++..+.+++++.+++.|++.+|+ ++||++
T Consensus 716 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~-~~lf~~ 793 (990)
T 3cww_A 716 VEDTLIEHAHTKPLLPSQLAAYREVQLPDR-GWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQIIS-EPAFNT 793 (990)
T ss_dssp HHHHHHHHHCCEECCGGGCCCCCBBCCCTT-EEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHhccCCCCCCchhhccccceEEcCCC-CeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 6778887763311100 0 0011111 111 22223 233344444 4444544677889999999999997 799999
Q ss_pred HhccCC-ccccccccCC-CceEEE----EEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc-CCCChh
Q psy14715 1005 VREKNG-AYGAGAVVSP-SGVIQF----YSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD-APIPPG 1076 (1147)
Q Consensus 1005 lRek~g-aY~v~~~~~~-~g~~~~----~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~-~~~~~~ 1076 (1147)
|||+.| +|+|+|++.. .|.+++ .++++| +..++++.+.++++++.+ ++|++||+++|..+++++. .+.+..
T Consensus 794 LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~~te~el~~~k~~li~~~~~~~~~~~ 872 (990)
T 3cww_A 794 LRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-DMTEEAFQKHIQALAIRRLDKPKKLS 872 (990)
T ss_dssp HTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHCCCSSHH
T ss_pred HHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcCCCCCHH
Confidence 999876 9999998876 676665 445666 678899999999999988 8999999999999999974 345555
Q ss_pred hHHHH---HHHc-CCCHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-----ccccCCCeEEEEcCCCC
Q psy14715 1077 SKGMS---KFLY-GKTDEMIEQYRLSVKQVTEDDIRRVADTYLSR-----DATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1077 ~~~~~---~~~~-g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~-----~~~~~~~~~~vvG~~~~ 1134 (1147)
..... .++. ++++++.+++.+.|.+||++||+++|++++.+ .+. .++|+|++..
T Consensus 873 ~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~----~v~v~g~~~~ 935 (990)
T 3cww_A 873 AESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKV----SVHVLAREMD 935 (990)
T ss_dssp HHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEE----EEEEECTTC-
T ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEE----EEEEECCCCc
Confidence 44432 2333 34678888999999999999999999999975 444 7999998764
No 4
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.6e-74 Score=749.76 Aligned_cols=865 Identities=13% Similarity=0.126 Sum_probs=612.8
Q ss_pred cccceeeeEEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcC
Q psy14715 159 PEFQMTAIKLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMA 233 (1147)
Q Consensus 159 ~~~~~~~~~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g 233 (1147)
+..+-..|+..+|+||++|++++++..+ ++|++||+.||.+..|+|||+|||+|+||++||..+.+.+++++. |
T Consensus 14 ~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~-G 92 (939)
T 1q2l_A 14 SDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMH-G 92 (939)
T ss_dssp CTTCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTT-T
T ss_pred CCCCCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHc-C
Confidence 3456666788889999999999998754 457889999999999999999999999999999776699999765 5
Q ss_pred CCCccccCCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCC
Q psy14715 234 TFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSD 313 (1147)
Q Consensus 234 ~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ 313 (1147)
+.+||+|+.|+|+|++. ++.++++.+|++++|++.+|.|++++|++| |++|.+|++.+.++
T Consensus 93 g~~NA~T~~d~T~y~~~-~~~~~l~~~L~~l~d~~~~p~f~~~~~~~E------------------r~~v~~E~~~~~~~ 153 (939)
T 1q2l_A 93 GSHNASTAPYRTAFYLE-VENDALPGAVDRLADAIAEPLLDKKYAERE------------------RNAVNAELTMARTR 153 (939)
T ss_dssp CEEEEEECSSCEEEEEE-ECGGGHHHHHHHHHHHHHCBCCCSTTHHHH------------------HHHHHHHHHHHTTS
T ss_pred CcceEEECCCcEEEEEE-eCHHHHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHhccCC
Confidence 67999999999999765 578899999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCcccccC----CChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccC
Q psy14715 314 NSYIFGEALMNNILPTYCYKHVSGGDPIKILN----LKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKI 389 (1147)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~----~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~ 389 (1147)
|..++.+.+.+.+|++|||+++++|++++|.+ ++.++|++||++||+|+||+|+|+||+|++++++++++ +|++|
T Consensus 154 ~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~-~f~~~ 232 (939)
T 1q2l_A 154 DGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAAD-TFGRV 232 (939)
T ss_dssp HHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHH-TGGGS
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHH-Hhhhh
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999996 99999
Q ss_pred CCCCCCCCCCcCCCCCCCCC-CceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCCCChHhhHHHH
Q psy14715 390 NPYQHHRSSTAVLPEPAWDK-PRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLV 468 (1147)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~~~s~L~~~lr 468 (1147)
++.....+ ....+++.. .....+... ...+++.+.++|+.|...+..+..++.+++.+||++.+|+|++.||
T Consensus 233 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~ 305 (939)
T 1q2l_A 233 PNKESKKP---EITVPVVTDAQKGIIIHYV----PALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQ 305 (939)
T ss_dssp CCCCCCCC---CCCSCSCCGGGSSEEEEEC----CSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHH
T ss_pred ccCCCCCC---CCCCCCCCHHHcCEEEEEE----eCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHH
Confidence 87532211 111122221 111222211 1256889999999998765446678999999999999999999999
Q ss_pred hcCCCCCccccccc--cCCCcceEEEEEEeCCCC---CcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHH
Q psy14715 469 ESGLGLSFSPVTGY--EASIHDTLFTVGLQGVDS---NKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIK 543 (1147)
Q Consensus 469 e~~~~~~~s~~~~~--~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (1147)
++|++ |++++++ ......+.|.+++. +.+ ++.+++++
T Consensus 306 ~~gl~--~~~~a~~~~~~~~~~g~f~i~~~-~~~~~~~~~~~~~~----------------------------------- 347 (939)
T 1q2l_A 306 KQGLV--EGISANSDPIVNGNSGVLAISAS-LTDKGLANRDQVVA----------------------------------- 347 (939)
T ss_dssp HTTCE--EEEEEEEESSTTSSEEEEEEEEE-ECHHHHHTHHHHHH-----------------------------------
T ss_pred HcCCc--hheeeccccccCCCceEEEEEEE-EChhhhhhHHHHHH-----------------------------------
Confidence 87766 4444442 23345688999884 444 47788888
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHH
Q psy14715 544 GAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYL 623 (1147)
Q Consensus 544 ~~i~~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 623 (1147)
.+.++|+++++.|++++|++++++.+..++.......+..++..++..+. +.++.+.......++. +|+++|
T Consensus 348 -~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~------vt~~~i 419 (939)
T 1q2l_A 348 -AIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPVEHTLDAVNIADR------YDAKAV 419 (939)
T ss_dssp -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCGGGTTTTTTCCCC------CCHHHH
T ss_pred -HHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCHHHHhcCchhhhc------cCHHHH
Confidence 99999999999999999999999999999876543333457777776665 4455544333333333 356999
Q ss_pred HHHHHHHhccCCCeEEEEEecCcChHHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHhccccCCCCCCC-cCCC
Q psy14715 624 QEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDR-ISQMNDQDLNKVYVNGTELRKEQEKEQNIDVLPT-LKIS 701 (1147)
Q Consensus 624 ~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lp~-l~~~ 701 (1147)
++++++ |. +++..++++.|....... ++++-..+ ...++++.++.+...... ... ..|.....+|. +.+.
T Consensus 420 ~~~~~~-l~-~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~p~~n~~~~~~~~~~ 491 (939)
T 1q2l_A 420 KERLAM-MT-PQNARIWYISPKEPHNKT----AYFVDAPYQVDKISAQTFADWQKKAAD-IAL-SLPELNPYIPDDFSLI 491 (939)
T ss_dssp HHHHHH-CS-GGGCEEEEECTTCCCCEE----CTTTCCEEEEEECCHHHHHHHHHHHHT-CCC-CCCCCCTTCCCCCCCC
T ss_pred HHHHHh-cC-HHHcEEEEEcCCCCCCcc----cceeCCeeeeeeCCHHHHHHHhccCcc-ccc-cCCCCCcCCCcCcccc
Confidence 999986 65 455666777886543210 00000000 123456566555432100 000 01111111211 1111
Q ss_pred CCCCccccccceeeeecCccEEEEecCCC---CeEEEEEEEeCCC--CCCCccccchhHHHHHhhcCCCCCCHHHHHHHH
Q psy14715 702 DVDDHVERVVTTDKHILQVPIQLSTQPTN---GVTYFRSVVDTSK--LSPELKPLVPLFNYVINQMRTKNYDFREMDQLI 776 (1147)
Q Consensus 702 di~~~~~~~~~~~~~~NG~~v~~~~~~~~---~~v~~~l~~~~g~--~~~~~~~~~~l~~~ll~~~Gt~~~s~~el~~~i 776 (1147)
. +......|..+.++||++||+++.+.- |.+.+.+.+..|. .+.+..+..+++..|+. .|+..+ ++...+
T Consensus 492 ~-~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~-~g~~~~---~~~~~l 566 (939)
T 1q2l_A 492 K-SEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAG-LALDQL---SNQASV 566 (939)
T ss_dssp C-CSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHH-HHHHHH---HHHHHH
T ss_pred c-CcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHH-HHHHHH---hhHHHH
Confidence 1 011223455567899999999998742 3777777777654 33344577789999988 676554 233333
Q ss_pred HhhccceEEEeeeccCCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcH
Q psy14715 777 HMSTGGISFNSHLGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGH 856 (1147)
Q Consensus 777 e~~g~~l~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1147)
.|.+++++. .+++.+++++++++++.+|+++.+++.+|.| +.++++.++.+.++.+.+...+++.
T Consensus 567 --~G~~~~~~~------------~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~-~~~~f~~~k~~~~~~l~~~~~~~p~ 631 (939)
T 1q2l_A 567 --GGISFSTNA------------NNGLMVNANGYTQRLPQLFQALLEGYFSYTA-TEDQLEQAKSWYNQMMDSAEKGKAF 631 (939)
T ss_dssp --TTEEEEEEE------------SSEEEEEEEEESSSHHHHHHHHHHHHHHCCC-CSHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred --cCcEEEEee------------CCcEEEEEEcccHhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHhhhhhcChH
Confidence 233333332 2357899999999999999999999999999 7889999998888888776454566
Q ss_pred HHHHHHHhccCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHh
Q psy14715 857 RYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFL 935 (1147)
Q Consensus 857 ~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~ 935 (1147)
.++...+...++.+. +...+..+.|+.++ .++|++||+++|.+.++.++|+||++ +++++++++++
T Consensus 632 ~~a~~~l~~~l~~~~-----~~~~~~~~~l~~it--------~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~ 698 (939)
T 1q2l_A 632 EQAIMPAQMLSQVPY-----FSRDERRKILPSIT--------LKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQ 698 (939)
T ss_dssp HHHHHHHHHTTSSSC-----CCHHHHHHHGGGCC--------HHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-----CCHHHHHHHHhcCC--------HHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHH
Confidence 666666666666542 22223455566665 79999999999999999999999999 99999999999
Q ss_pred hcCCCCCCCCCCCcccccccCccceeEEEecc--cccEE-EEEecCCCCCCCchhHHHHHHHhhcCccchhhHhccCC-c
Q psy14715 936 QSIPGDFTSQPGQTVHSFNVSGIQKVSHVLPF--PVNFT-AKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNG-A 1011 (1147)
Q Consensus 936 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v-~~~~~~~~~~~~d~~al~vl~~iLg~srL~~~lRek~g-a 1011 (1147)
+.|+......... .....+.. ....+..+. .++.+ .++++....+.++.+.+.+|..++. ++||++|||+.| +
T Consensus 699 ~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~-s~lf~~LRek~gl~ 775 (939)
T 1q2l_A 699 KQLGADGSEWCRN-KDVVVDKK-QSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQ-PWFYNQLRTEEQLG 775 (939)
T ss_dssp HHHTCCCSCCCCC-EEECCCSC-EEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-HHHTHHHHTSCCSS
T ss_pred HHHccCCcccccc-ceEEeCCC-ceEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 9887543221111 11111222 122222232 23444 4555544333334455566666665 899999999998 9
Q ss_pred cccccccCC----Cce-EEEEE-eeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc-CCCChhhHHHHH-
Q psy14715 1012 YGAGAVVSP----SGV-IQFYS-YRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD-APIPPGSKGMSK- 1082 (1147)
Q Consensus 1012 Y~v~~~~~~----~g~-~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~-~~~~~~~~~~~~- 1082 (1147)
|+|++++.. .|. +.+.+ .++| +..++++.+.++++++.+ ++|++||+++|..+++++. ...+.......+
T Consensus 776 Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w 854 (939)
T 1q2l_A 776 YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-AMKPDEFAQIQQAVITQMLQAPQTLGEEASKLS 854 (939)
T ss_dssp SCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHH
T ss_pred ceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999998763 342 22222 2333 457788888888888775 6999999999999999974 344444433222
Q ss_pred --H-HcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC--C--CCCCceEe
Q psy14715 1083 --F-LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN--N--LGDEWKIV 1143 (1147)
Q Consensus 1083 --~-~~g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~--~--~~~~~~~~ 1143 (1147)
. ..+..+++.+++.+.|++||++||+++|++|+.+... ...+++|+|+... . ...+|+.+
T Consensus 855 ~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~-~~l~v~v~G~~~~~~~~~~~~~~~~~ 921 (939)
T 1q2l_A 855 KDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQG-MAILSQISGSQNGKAEYVHPEGWKVW 921 (939)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSS-EEEEEEECCSSHHHHCCCCCTTCEEC
T ss_pred HHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CEEEEEEecCCCCcccccccCCCcEe
Confidence 2 2455677888999999999999999999999764432 0013458898753 1 23456544
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-50 Score=473.65 Aligned_cols=397 Identities=16% Similarity=0.173 Sum_probs=334.1
Q ss_pred eEEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCcccc
Q psy14715 166 IKLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMT 240 (1147)
Q Consensus 166 ~~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t 240 (1147)
++..+|+||++|++.+++..+ ++|++|++.|+++..|+|||+|||+|+||++||..+ +.+.+++ .|+.+||+|
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~-~~~~l~~-~G~~~na~t 79 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALA-VNRAFDR-MGAQYNAFT 79 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHH-HHHHHHH-TTCEEEEEE
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHH-HHHHHHH-hCCCcccee
Confidence 356678999999999998743 567889999999999999999999999999998766 7787865 577899999
Q ss_pred CCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHHH
Q psy14715 241 GPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGE 320 (1147)
Q Consensus 241 ~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~ 320 (1147)
+.|+|.|++ ++.+++++.+|+++.|++ +|.|++++|++| |++|.+|++...++|..++.+
T Consensus 80 ~~d~t~y~~-~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~e------------------k~~v~~e~~~~~~~p~~~~~~ 139 (406)
T 3eoq_A 80 SEEATVYYG-AVLPEFAYDLLGLFAKLL-RPALREEDFQTE------------------KLVILEEIARYQDRPGFMAYE 139 (406)
T ss_dssp CSSCEEEEE-EECGGGHHHHHHHHHHHT-SCCCCHHHHHHH------------------HHHHHHHHHHHHHCHHHHHHH
T ss_pred cCCeEEEEE-EecHHHHHHHHHHHHHHh-cCCCCHHHHHHH------------------HHHHHHHHHHhcCCHHHHHHH
Confidence 999999965 556889999999999999 999999999999 999999999988999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCCc
Q psy14715 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTA 400 (1147)
Q Consensus 321 ~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 400 (1147)
.+.+.+|++|||+++++|++++|.+++.++|++||++||+|+||+|+|+||+|++++++++++ +|++|+..+.++
T Consensus 140 ~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~-~f~~~~~~~~~~---- 214 (406)
T 3eoq_A 140 WARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAER-LTEAWPEGEAER---- 214 (406)
T ss_dssp HHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH-HHTTCCCCCCCC----
T ss_pred HHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHH-HhcCCCCCCCCC----
Confidence 999999999999999999999999999999999999999999999999999999999999997 999998653211
Q ss_pred CCCCCCCCCCceEEEeccCCCCCCC-CcceEEEEEEccCCCCHHHHHHHHHHHHHhcCCCChHhhHHHHhcCCCCCcccc
Q psy14715 401 VLPEPAWDKPRQLHIHGRHDPLASE-NQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPV 479 (1147)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~~~s~L~~~lre~~~~~~~s~~ 479 (1147)
. ..+....++...+. .+. .++.+.++|++|...+ ++.+++.+++.+||++.+|||+++||++| ..|+++
T Consensus 215 ~-~~~~~~~~~~~~~~------~~~~~q~~~~~~~~~~~~~~-~d~~~l~vl~~iLgg~~~srL~~~lre~g--l~y~~~ 284 (406)
T 3eoq_A 215 A-YPPLTPAFGVEERP------YEKARALYLVALFPGVAYQE-EARFPGQVLAHLLGEEGSGRLHFALVDKG--LAEVAS 284 (406)
T ss_dssp C-CCCCCCCCEEEEEE------CTTCSSEEEEEEEECCCTTC-TTHHHHHHHHHHHHCTTTSHHHHHTTTTT--SEEEEE
T ss_pred C-CCCCCCCCceEEEe------cCCccceEEEEEecCCCCCC-chHHHHHHHHHHhCCCcchHHHHHHHHcC--CeeEEE
Confidence 1 11111233444443 344 7999999999988776 78999999999999999999999999965 457777
Q ss_pred ccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHHHcCCC
Q psy14715 480 TGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFD 559 (1147)
Q Consensus 480 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~ 559 (1147)
+++......+.|.+++ ++++++.+++++ .+.++|++++++|++
T Consensus 285 s~~~~~~~~g~~~i~~-~~~~~~~~~~~~------------------------------------~i~~~l~~l~~~~~t 327 (406)
T 3eoq_A 285 FGLEEADRAGTFHAYV-QADPARKGEVLA------------------------------------VLQEELDRLGREGVG 327 (406)
T ss_dssp EEEEECSSCEEEEEEE-EECGGGHHHHHH------------------------------------HHHHHHHHHHHHCCC
T ss_pred EEecccCCceEEEEEE-EeCcchHHHHHH------------------------------------HHHHHHHHHHhCCCC
Confidence 7766666678999998 588889999988 999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHhccCCCeEE
Q psy14715 560 KERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNNPHKLI 639 (1147)
Q Consensus 560 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l~~~~~~~~ 639 (1147)
++||+++|+.++.++....++.+ .++..++..+++++++..+ .+.++.+.++ |++||++++++||. +++. +
T Consensus 328 ~~el~~ak~~l~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v---t~~dv~~~a~~~l~-~~~~-~ 398 (406)
T 3eoq_A 328 EEEVERAKTPLATGLVFAGETPM-QRLFHLGMEYLYTGRYLSL---EEVKARVQRV---TSREVNALLERGFL-EKGL-Y 398 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHSSCCCH---HHHHHHHHHC---CHHHHHHHHHTTTT-TSCE-E
T ss_pred HHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcCCCCCH---HHHHHHHHhC---CHHHHHHHHHHhcC-cccE-E
Confidence 99999999999999876544443 5677777777766655543 3444555553 55999999999998 4555 7
Q ss_pred EEEecC
Q psy14715 640 ITMSPE 645 (1147)
Q Consensus 640 ~~~~p~ 645 (1147)
++++|.
T Consensus 399 ~vvGp~ 404 (406)
T 3eoq_A 399 YLVLPH 404 (406)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 777775
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=4.6e-49 Score=467.89 Aligned_cols=407 Identities=16% Similarity=0.166 Sum_probs=335.3
Q ss_pred EEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCccccC
Q psy14715 167 KLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTG 241 (1147)
Q Consensus 167 ~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~ 241 (1147)
+..+|+||++|++++++..+ ++|.+|+..|+++..|+||++|||+|+||++||..+ +.+.+++ .|+.+||+|+
T Consensus 8 ~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~-l~~~l~~-~g~~~na~t~ 85 (445)
T 3ami_A 8 FETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGE-FSKRVAA-MGGRDNAFTT 85 (445)
T ss_dssp EEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTH-HHHHHHH-TTCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHH-HHHHHHH-hCCccccccC
Confidence 45567899999999987643 467889999999999999999999999999999865 8888876 5668999999
Q ss_pred CCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEeccc-ccCCChhHHHHH
Q psy14715 242 PDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMK-GAFSDNSYIFGE 320 (1147)
Q Consensus 242 ~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~-~~~~~~~~~~~~ 320 (1147)
.|+|+|++. ++.++++.+|+++.|++.+|.|++++|++| |++|.+|++ ...++|..++.+
T Consensus 86 ~d~t~y~~~-~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e------------------~~~v~~e~~~~~~~~p~~~~~~ 146 (445)
T 3ami_A 86 RDYTAYYQQ-VPSSRLSDVMGLEADRMANLVVDDELFKKE------------------IQVIAEERRWRTDDKPRSKAYE 146 (445)
T ss_dssp SSCEEEEEE-EEGGGHHHHHHHHHHHHHCBCCCHHHHHHH------------------HHHHHHHHHHTGGGCHHHHHHH
T ss_pred CCeEEEEEE-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHH------------------HHHHHHHHHhcccCChHHHHHH
Confidence 999999654 467899999999999999999999999999 999999999 677899999999
Q ss_pred HHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCCc
Q psy14715 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTA 400 (1147)
Q Consensus 321 ~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 400 (1147)
.+.+.+|++|||+++++|++++|++++.++|++||++||+|+||+|+|+||+|++++++++++ +|++||....+.. .
T Consensus 147 ~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~-~f~~~~~~~~~~~--~ 223 (445)
T 3ami_A 147 ALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQ-TYGKLARVEAPAR--K 223 (445)
T ss_dssp HHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHH-TGGGSCCCCCCCC--C
T ss_pred HHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHH-HhcCCCCCCCCCC--C
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999986532211 0
Q ss_pred CCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccC---CCCHHHHHHHHHHHHHhcCCCChHhhHHHHhcCCCCCcc
Q psy14715 401 VLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAV---MDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFS 477 (1147)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~---~~~~~~~~~l~vl~~iL~~~~~s~L~~~lre~~~~~~~s 477 (1147)
.+..+....++...+. .+..++.+.++|++|. ..+.++.+++.+++.+|+++.+|||++.||++ .+..|+
T Consensus 224 ~~~~~~~~~~~~~~~~------~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~-~gl~y~ 296 (445)
T 3ami_A 224 QQGEPQQAGVRRVTVK------APAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRG-NKHAVS 296 (445)
T ss_dssp CCCCCCCCSCEEEEEE------EECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTT-SCCEEE
T ss_pred CCCCCCCCCceEEEEe------cCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhc-CCcEEE
Confidence 1112222333333333 2356889999999998 55248999999999999999999999999965 355677
Q ss_pred ccccccC-CCc-ceEEEEEEeCCCCC-cHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHH
Q psy14715 478 PVTGYEA-SIH-DTLFTVGLQGVDSN-KFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVI 554 (1147)
Q Consensus 478 ~~~~~~~-~~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~ 554 (1147)
+++++.. ... .+.|.+++. +.++ +.+++++ .+.++|++++
T Consensus 297 v~~~~~~~~~~~~g~~~i~~~-~~~~~~~~~~~~------------------------------------~i~~~l~~l~ 339 (445)
T 3ami_A 297 AGAGYDSLSRGQQGLFILEGV-PSKGVTIAQLET------------------------------------DLRAQVRDIA 339 (445)
T ss_dssp EEEECCCCCSSCCEEEEEEEE-ECTTCCHHHHHH------------------------------------HHHHHHHHHH
T ss_pred EEeeccccccCCCCeEEEEEE-ECCCCCHHHHHH------------------------------------HHHHHHHHHH
Confidence 7776653 334 688999885 5555 5888888 9999999999
Q ss_pred HcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHhccC
Q psy14715 555 AEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNN 634 (1147)
Q Consensus 555 ~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l~~~ 634 (1147)
+.|++++||+++|+.++.++.....+.+ .++..+...+.+++++..+..+.+.++.+ |+++|++++++||. +
T Consensus 340 ~~g~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~i~~v------t~~dv~~~a~~~l~-~ 411 (445)
T 3ami_A 340 AKGVTEAELSRVKSQMVAGKVYEQDSLM-GQATQIGGLEVLGLSWRDDDRFYQQLRSV------TAAEVKAAAARLLT-D 411 (445)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHTTTCCTTHHHHHHHHHHTC------CHHHHHHHHHTTSC-S
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhhCHH-HHHHHHHHHHHcCCChHHHHHHHHHHHcC------CHHHHHHHHHHHcC-c
Confidence 9999999999999999999876544433 57778888888877766554444444444 55999999999998 5
Q ss_pred CCeEEEEEecCcChH
Q psy14715 635 PHKLIITMSPEKTFD 649 (1147)
Q Consensus 635 ~~~~~~~~~p~~~~~ 649 (1147)
++.+++++.|.....
T Consensus 412 ~~~~~~~~~p~~~~~ 426 (445)
T 3ami_A 412 DTLTVANLVPLPPDP 426 (445)
T ss_dssp TTEEEEEEEEECC--
T ss_pred CCeEEEEEccCccCc
Confidence 677888888876543
No 7
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=7.7e-48 Score=454.21 Aligned_cols=400 Identities=15% Similarity=0.197 Sum_probs=329.9
Q ss_pred eEEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCcccc
Q psy14715 166 IKLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMT 240 (1147)
Q Consensus 166 ~~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t 240 (1147)
++..+|+||++|++.+++..+ ++|.+|++.|+.+..|+|||+|||+|+||++|+..+ +.+.++. .|+.+||+|
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~-~~~~l~~-~G~~~na~t 79 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQE-IAEFFDS-IGGQVNAFT 79 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHH-HHHHHHT-TTSCEEEEE
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHH-HHHHHHH-hCCceeeee
Confidence 456678999999999998754 568889999999999999999999999999999866 7777755 577899999
Q ss_pred CCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHHH
Q psy14715 241 GPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGE 320 (1147)
Q Consensus 241 ~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~ 320 (1147)
+.|+|+|++ ++..++++.+|+++.|++.+|.|++++|++| |+++.+|++...++|..++.+
T Consensus 80 ~~d~t~~~~-~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e------------------k~~v~~e~~~~~~~p~~~~~~ 140 (421)
T 3hdi_A 80 SKEYTCYYA-KVLDDHAGQAIDTLSDMFFHSTFQKEELEKE------------------RKVVFEEIKMVDDTPDDIVHD 140 (421)
T ss_dssp CSSCEEEEE-EEEGGGHHHHHHHHHHHHHSBCCCHHHHHHH------------------HHHHHHHHHHHHTCHHHHHHH
T ss_pred ccceEEEEE-EecHHHHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHHhhCCHHHHHHH
Confidence 999999955 4567899999999999999999999999999 999999999988999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCCc
Q psy14715 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTA 400 (1147)
Q Consensus 321 ~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 400 (1147)
.+.+.+|++|||+++.+|++++|++++.++|++||++||+|+||+|+|+||+| +++++++++ +|+.|+.....+.
T Consensus 141 ~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~-~f~~~~~~~~~~~--- 215 (421)
T 3hdi_A 141 LLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKE-TFSQVKPTTYNYQ--- 215 (421)
T ss_dssp HHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHH-HTTSSCCCCCCCC---
T ss_pred HHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHH-HhcCCCCCCCCCC---
Confidence 99999999999999999999999999999999999999999999999999999 999999997 9999987632211
Q ss_pred CCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCCCChHhhHHHHhcCCCCCccccc
Q psy14715 401 VLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVT 480 (1147)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~~~s~L~~~lre~~~~~~~s~~~ 480 (1147)
...+.+ .+...... .+.+++.+.++|+++...+ ++.+++.+++.+|+++.+|||+++||++ .|..|++++
T Consensus 216 -~~~~~~-~~~~~~~~------~~~~q~~v~~~~~~~~~~~-~d~~~l~vl~~iLgg~~~srL~~~lRe~-~glay~~~s 285 (421)
T 3hdi_A 216 -GEKPMF-LPNRIVRK------KETEQAHLCLGYPGLPIGD-KDVYALVLLNNVLGGSMSSRLFQDIREK-RGLCYSVFS 285 (421)
T ss_dssp -CCCCCC-CCCEEEEE------CCCSEEEEEEEEECCCTTC-TTHHHHHHHHHHHTSSSSSHHHHHHTTT-TCCCSCEEE
T ss_pred -CCCCCC-CCceEEec------CCCCceEEEEEEecCCCCC-chHHHHHHHHHHhCCCcccHHHHHHHHh-cCCEEEEEE
Confidence 111222 22322222 2467899999999987766 7899999999999999999999999986 344577766
Q ss_pred cccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHHHcCCCH
Q psy14715 481 GYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDK 560 (1147)
Q Consensus 481 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~ 560 (1147)
++......+.|.+++ ++++++.+++++ .+.++|+++++.|+++
T Consensus 286 ~~~~~~~~g~~~i~~-~~~~~~~~~~~~------------------------------------~i~~~l~~l~~~~~t~ 328 (421)
T 3hdi_A 286 YHSSFRDSGMLTIYA-GTGHDQLDDLVY------------------------------------SIQETTSALAEKGLTE 328 (421)
T ss_dssp EEEECSSCEEEEEEE-EEEGGGHHHHHH------------------------------------HHHHHHHHHHTTCCCH
T ss_pred eecccCCCceEEEEE-EeCHHHHHHHHH------------------------------------HHHHHHHHHHhCCCCH
Confidence 666556678999988 588889999988 9999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHhccCCCeEEE
Q psy14715 561 ERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNNPHKLII 640 (1147)
Q Consensus 561 ~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 640 (1147)
+||+++|+.+..++....++.+ .++..+....+.++.+... .+.++.+.++ |++||++++++|| + ++..++
T Consensus 329 ~el~~ak~~l~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v---t~~dv~~~a~~~~-~-~~~~~~ 399 (421)
T 3hdi_A 329 KELENGKEQLKGSLMLSLESTN-SRMSRNGKNELLLKKHRSL---DEMIEQINAV---QKQDVSRLAKILL-S-ASPSIS 399 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTSCCCCH---HHHHHHHHHC---CHHHHHHHHHHHT-T-SCCEEE
T ss_pred HHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHhcCCCCCH---HHHHHHHHcC---CHHHHHHHHHHHc-c-cCcEEE
Confidence 9999999999999875544433 4555554444444443332 3444555553 5699999999999 3 446677
Q ss_pred EEecCcC
Q psy14715 641 TMSPEKT 647 (1147)
Q Consensus 641 ~~~p~~~ 647 (1147)
+++|...
T Consensus 400 vvgp~~~ 406 (421)
T 3hdi_A 400 LINANGE 406 (421)
T ss_dssp EEESSCS
T ss_pred EECchhc
Confidence 7888654
No 8
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=3.6e-46 Score=443.11 Aligned_cols=405 Identities=13% Similarity=0.120 Sum_probs=326.0
Q ss_pred eeEEEEecccceEEEeecCCCC----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCcccc
Q psy14715 165 AIKLQHVKTLAEYFHLSRDDSN----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMT 240 (1147)
Q Consensus 165 ~~~~~~l~NG~~v~~~~~~~~~----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t 240 (1147)
.++..+|+||++|++.+++.+. ++|.+|++.|+.+..|++||+|||+|+||++||..+ +.+.+++ .|+.+||+|
T Consensus 13 ~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~-~~~~l~~-~G~~~na~t 90 (446)
T 1pp9_A 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNA-LEKEVES-MGAHLNAYS 90 (446)
T ss_dssp CCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTH-HHHHHHH-TTCEEEEEE
T ss_pred CceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHH-HHHHHHH-cCCEEEEEE
Confidence 4566778999999998877542 456789999999999999999999999999999877 8888876 567899999
Q ss_pred CCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHHH
Q psy14715 241 GPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGE 320 (1147)
Q Consensus 241 ~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~ 320 (1147)
+.|+|.|++. +..++++.+|+++.|++.+|.|++++|++| |++|.+|++...++|..++.+
T Consensus 91 ~~d~t~~~~~-~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e------------------k~~v~~e~~~~~~~~~~~~~~ 151 (446)
T 1pp9_A 91 TREHTAYYIK-ALSKDLPKAVELLADIVQNCSLEDSQIEKE------------------RDVILQELQENDTSMRDVVFN 151 (446)
T ss_dssp CSSCEEEEEE-EEGGGHHHHHHHHHHHHHHBCCCHHHHHHH------------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCeEEEEEE-ecHHHHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHhhhcCHHHHHHH
Confidence 9999999654 457889999999999999999999999999 999999999998999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCCc
Q psy14715 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTA 400 (1147)
Q Consensus 321 ~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 400 (1147)
.+.+.+|++|||+++.+|++++|++++.++|++||++||+|+||+|+|+||+|++++++++++ +|+.|+.....+. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~-~f~~~~~~~~~~~-~~ 229 (446)
T 1pp9_A 152 YLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQK-HFSGLSGTYDEDA-VP 229 (446)
T ss_dssp HHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH-HHTTSCSCCCSSC-CC
T ss_pred HHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHH-HhccCCCCCCCCc-cc
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999986532211 00
Q ss_pred CCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcC---------CCChHhhHHHHhcC
Q psy14715 401 VLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLK---------GPNAPFYKNLVESG 471 (1147)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~---------~~~s~L~~~lre~~ 471 (1147)
.+..+++. +....+.. .+.+++.+.++|++|...+ ++..++.+++.+|++ +.+|||++.||++|
T Consensus 230 ~~~~~~~~-~~~~~~~~-----~~~~~~~v~~~~~~~~~~~-~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~g 302 (446)
T 1pp9_A 230 TLSPCRFT-GSQICHRE-----DGLPLAHVAIAVEGPGWAH-PDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNK 302 (446)
T ss_dssp CCCCCCCC-CEEEEEEE-----TTSSSEEEEEEEEECCTTC-THHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHT
T ss_pred cCCCCCCC-CceEEEec-----CCccceEEEEEEecCCCCC-ccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcC
Confidence 10012221 22222221 2356899999999988766 789999999999985 67999999999876
Q ss_pred CCCCccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHH
Q psy14715 472 LGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTID 551 (1147)
Q Consensus 472 ~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 551 (1147)
++ |++++++..+...+.|.+++. +++++.+++++ .+.++|+
T Consensus 303 la--y~~~s~~~~~~~~g~~~i~~~-~~~~~~~~~~~------------------------------------~i~~~l~ 343 (446)
T 1pp9_A 303 LC--QSFQTFNICYADTGLLGAHFV-CDHMSIDDMMF------------------------------------VLQGQWM 343 (446)
T ss_dssp CC--SEEEEEEEECSSCEEEEEEEE-ECTTSHHHHHH------------------------------------HHHHHHH
T ss_pred Ce--EEEEEecccCCCCeEEEEEEE-ECHHHHHHHHH------------------------------------HHHHHHH
Confidence 55 665555554455688999884 78899999998 9999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHh
Q psy14715 552 EVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYL 631 (1147)
Q Consensus 552 ~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l 631 (1147)
++++ |++++||+++|..+..++.....+.. .++..++..+...+.+... .+..+.+.+ +|++||++++++|+
T Consensus 344 ~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~---~~~~~~i~~---vt~edv~~~a~~~~ 415 (446)
T 1pp9_A 344 RLCT-SATESEVLRGKNLLRNALVSHLDGTT-PVCEDIGRSLLTYGRRIPL---AEWESRIAE---VDARVVREVCSKYF 415 (446)
T ss_dssp HHHH-HCCHHHHHHHHHHHHHHHHHHSCSHH-HHHHHHHHHHHHTSSCCCH---HHHHHHHHT---CCHHHHHHHHHHHT
T ss_pred HHhc-cCCHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHcCCCCCH---HHHHHHHHc---CCHHHHHHHHHHHc
Confidence 9987 69999999999999999875533332 4566665555332333322 233444444 36699999999999
Q ss_pred ccCCCeEEEEEecCcC
Q psy14715 632 RNNPHKLIITMSPEKT 647 (1147)
Q Consensus 632 ~~~~~~~~~~~~p~~~ 647 (1147)
. +++..+++++|...
T Consensus 416 ~-~~~~~~~~~g~~~~ 430 (446)
T 1pp9_A 416 Y-DQCPAVAGFGPIEQ 430 (446)
T ss_dssp T-TCCCEEEEEESCTT
T ss_pred C-CCCcEEEEECCccc
Confidence 8 45567777888654
No 9
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=2.4e-45 Score=436.14 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=327.7
Q ss_pred eeEEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCccc
Q psy14715 165 AIKLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAM 239 (1147)
Q Consensus 165 ~~~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~ 239 (1147)
.++..+|+||++|++.+++.++ ++|.+|+..|+.+..|+|||+|||+|+||++|+..+ +.+.+++. |+.+||+
T Consensus 6 ~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~-l~~~l~~~-g~~~na~ 83 (443)
T 1hr6_B 6 GTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQG-IELEIENI-GSHLNAY 83 (443)
T ss_dssp CCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHH-HHHHHHHT-TCEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHH-HHHHHHHc-CCeEEEE
Confidence 3466778999999999888763 467789999999999999999999999999999876 88888764 6689999
Q ss_pred cCCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHH
Q psy14715 240 TGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFG 319 (1147)
Q Consensus 240 t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~ 319 (1147)
|+.|+|.|++ ++..++++.+|+++.|++.+|.|++++|++| |++|.+|++...++|..++.
T Consensus 84 t~~~~t~~~~-~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e------------------~~~v~~e~~~~~~~~~~~~~ 144 (443)
T 1hr6_B 84 TSRENTVYYA-KSLQEDIPKAVDILSDILTKSVLDNSAIERE------------------RDVIIRESEEVDKMYDEVVF 144 (443)
T ss_dssp ECSSEEEEEE-EEEGGGHHHHHHHHHHHHHSBCCCHHHHHHH------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred ECCCeEEEEE-EecHHHHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHhhhCChHHHHH
Confidence 9999999955 4567889999999999999999999999999 99999999998899999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCC
Q psy14715 320 EALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSST 399 (1147)
Q Consensus 320 ~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~ 399 (1147)
+.+.+.+|++|||+++++|++++|++++.++|++||++||+|+||+|+++||+|++++++++++ +|+.|+.......
T Consensus 145 ~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~-~f~~~~~~~~~~~-- 221 (443)
T 1hr6_B 145 DHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQK-YFGHVPKSESPVP-- 221 (443)
T ss_dssp HHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH-HHTTSCCCSSCCC--
T ss_pred HHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHH-HhcCCCCCCCCCC--
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999986532221
Q ss_pred cCC----CCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcC---------CCChHhhHH
Q psy14715 400 AVL----PEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLK---------GPNAPFYKN 466 (1147)
Q Consensus 400 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~---------~~~s~L~~~ 466 (1147)
.+ ..+++. +....+.. .+.+++.+.++|++|...+ ++..++.+++.+|++ +.+|||++.
T Consensus 222 -~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~~~~~~~~~~~-~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~ 293 (443)
T 1hr6_B 222 -LGSPRGPLPVFC-RGERFIKE-----NTLPTTHIAIALEGVSWSA-PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVA 293 (443)
T ss_dssp -TTSCCSSCCCCC-CEEEEEEC-----TTCSEEEEEEEEECCCTTC-TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHH
T ss_pred -cccccCCCCCCC-CCeEEecc-----CCccceEEEEEEecCCCCC-ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHH
Confidence 11 112221 22222221 2367889999999987655 789999999999976 578999999
Q ss_pred HHhcCCCCCccccccccCCCcceEEEEEEeCCC--CCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHH
Q psy14715 467 LVESGLGLSFSPVTGYEASIHDTLFTVGLQGVD--SNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKG 544 (1147)
Q Consensus 467 lre~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1147)
||++ .|..|++++++......+.|.+++. ++ +++.+++++
T Consensus 294 lre~-~glay~~~~~~~~~~~~g~~~i~~~-~~~~~~~~~~~~~------------------------------------ 335 (443)
T 1hr6_B 294 ASQN-GSLANSYMSFSTSYADSGLWGMYIV-TDSNEHNVRLIVN------------------------------------ 335 (443)
T ss_dssp HHST-TCSCSEEEEEEEECSSCEEEEEEEE-EETTTCCHHHHHH------------------------------------
T ss_pred HHHH-cCCeEEEEeeecCCCCceEEEEEEE-ecCChhHHHHHHH------------------------------------
Confidence 9965 2445766665555556688999884 78 889999998
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhc-cCCChhHhhhHHHHHHHHHHHhhcCccHH
Q psy14715 545 AVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMN-HDCDVIHLLHINDRLNWFKKHIQENPTYL 623 (1147)
Q Consensus 545 ~i~~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 623 (1147)
.+.++|+++++.|++++||+++|+.++.++.....+.. .++..+...+. ++. +... .+..+.+.+ +|++||
T Consensus 336 ~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~---~~~~~~i~~---vt~~dv 407 (443)
T 1hr6_B 336 EILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGST-AIVEDIGRQVVTTGK-RLSP---EEVFEQVDK---ITKDDI 407 (443)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHH-HHHHHHHHHHHHHSS-CCCH---HHHHHHHHT---CCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHhcCC-cCCH---HHHHHHHHh---CCHHHH
Confidence 99999999999899999999999999999876544433 56666665553 443 2222 233444444 366999
Q ss_pred HHHHHHHhccCCCeEEEEEecCcC
Q psy14715 624 QEKVDEYLRNNPHKLIITMSPEKT 647 (1147)
Q Consensus 624 ~~~~~~~l~~~~~~~~~~~~p~~~ 647 (1147)
++++++||. +++..++++.|...
T Consensus 408 ~~~a~~~l~-~~~~~~~v~g~~~~ 430 (443)
T 1hr6_B 408 IMWANYRLQ-NKPVSMVALGNTST 430 (443)
T ss_dssp HHHHHHHSS-SCCEEEEEEECGGG
T ss_pred HHHHHHHhc-cCCcEEEEECCccc
Confidence 999999998 45667777787643
No 10
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=3e-44 Score=425.65 Aligned_cols=410 Identities=14% Similarity=0.148 Sum_probs=330.9
Q ss_pred cccceeeeEEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcC
Q psy14715 159 PEFQMTAIKLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMA 233 (1147)
Q Consensus 159 ~~~~~~~~~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g 233 (1147)
|......++..+|+||++|++++++..+ +.|.+|+..+ ++..|++|++|||+|+|+++|+..+ +.+.+.+ .|
T Consensus 7 ~~~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~-l~~~l~~-~g 83 (434)
T 3gwb_A 7 PSHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGA-IAQGFEG-LG 83 (434)
T ss_dssp -----CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHH-HHHHHHT-TT
T ss_pred CcccCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHH-HHHHHHH-hC
Confidence 3344445677778899999999998643 4677899998 8899999999999999999999765 7888865 46
Q ss_pred CCCccccCCCcceeecccCC-HHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCC
Q psy14715 234 TFMNAMTGPDYTFYPFSSQN-HCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS 312 (1147)
Q Consensus 234 ~~~na~t~~d~t~y~~~~~~-~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~ 312 (1147)
+.+|++|+.++|.|.+.... .++++.+|+++.+++.+|.|++++|++| |+++.+|++...+
T Consensus 84 ~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~------------------~~~~~~e~~~~~~ 145 (434)
T 3gwb_A 84 ADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARI------------------KNQMLAGFEYQKQ 145 (434)
T ss_dssp CEEEEEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHH------------------HHHHHHHHHHHTT
T ss_pred CEEEeeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHHhhc
Confidence 68999999999999665433 2459999999999999999999999999 9999999999899
Q ss_pred ChhHHHHHHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCC
Q psy14715 313 DNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPY 392 (1147)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~ 392 (1147)
+|..++.+.+.+.+|++|||+++.+|++++|++++.++|++||++||+|+||+++|+||++.+++.+++++ +|+.|+..
T Consensus 146 ~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~-~~~~l~~~ 224 (434)
T 3gwb_A 146 NPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQ-VSAALPKG 224 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHH-HHHHSCCC
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHH-HHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 99999876
Q ss_pred CCCCCCCcCCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCC-CChHhhHHHHhcC
Q psy14715 393 QHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKG-PNAPFYKNLVESG 471 (1147)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~-~~s~L~~~lre~~ 471 (1147)
.... .+..+....+....+. .+..++.+.++|.++...+ ++..++.+++.+|+++ .+|||++.||++
T Consensus 225 ~~~~----~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~-~d~~~l~vl~~iLg~~~~~s~L~~~lRe~- 292 (434)
T 3gwb_A 225 PALA----KIEQPAEPKASIGHIE------FPSSQTSLMLAQLGIDRDD-PDYAAVSLGNQILGGGGFGTRLMSEVREK- 292 (434)
T ss_dssp CCCC----CCCCCCCCCCEEEEEE------CCSSEEEEEEEEECCBTTC-TTHHHHHHHHHHHHSSSSCSHHHHHHTTT-
T ss_pred CCCC----CCCCCCCCCCceEEEe------CCCCceeEEecCcCCCCCC-cchHHHHHHHHHhCCCcccchhHHHHHhh-
Confidence 3221 1111222233333333 2357889999999887666 7889999999999998 999999999986
Q ss_pred CCCCccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHH
Q psy14715 472 LGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTID 551 (1147)
Q Consensus 472 ~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 551 (1147)
.+..|++++++......+.|.+++. +++++.+++++ .+.++|+
T Consensus 293 ~gl~Y~v~~~~~~~~~~g~~~i~~~-~~~~~~~~~~~------------------------------------~i~~~l~ 335 (434)
T 3gwb_A 293 RGLTYGVYSGFTPMQARGPFMINLQ-TRAEMSEGTLK------------------------------------LVQDVFA 335 (434)
T ss_dssp TCCCSCEEEEECCBSSCCEEEEEEE-EEGGGHHHHHH------------------------------------HHHHHHH
T ss_pred cCCcceeeeecccCCCceeEEEEEe-cchhhHHHHHH------------------------------------HHHHHHH
Confidence 3444777777766666788999884 78888888888 9999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHh
Q psy14715 552 EVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYL 631 (1147)
Q Consensus 552 ~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l 631 (1147)
++++.|++++||+++|+.++.++.....+.+ .++..+...+.++.++.... +..+.+.++ |++||++++++||
T Consensus 336 ~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~i~~v---t~~dv~~~a~~~l 408 (434)
T 3gwb_A 336 EYLKNGPTQKELDDAKRELAGSFPLSTASNA-DIVGQLGAMGFYNLPLSYLE---DFMRQSQEL---TVEQVKAAMNKHL 408 (434)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHC---CCCCHH-HHHHHHHHHHHTTCCTTHHH---HHHHHHHHC---CHHHHHHHHHHHC
T ss_pred HHHhcCCCHHHHHHHHHHHHhhhhhhccCHH-HHHHHHHHHHHcCCCccHHH---HHHHHHHhC---CHHHHHHHHHHhc
Confidence 9999999999999999999999876654443 56777766666766655433 344444443 5599999999999
Q ss_pred ccCCCeEEEEEecCcC
Q psy14715 632 RNNPHKLIITMSPEKT 647 (1147)
Q Consensus 632 ~~~~~~~~~~~~p~~~ 647 (1147)
. +++..++++.|...
T Consensus 409 ~-~~~~~~~vvg~~~~ 423 (434)
T 3gwb_A 409 N-VDKMVIVSAGPTVA 423 (434)
T ss_dssp C-GGGCEEEEEECCCC
T ss_pred C-hhhEEEEEEcCccc
Confidence 8 55667777887654
No 11
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=5.8e-44 Score=421.70 Aligned_cols=400 Identities=15% Similarity=0.198 Sum_probs=325.7
Q ss_pred EEEEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCC----CCCCCChHHHHHhhhcCCCCc
Q psy14715 167 KLQHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSV----KYPCRDPFMKMLTRSMATFMN 237 (1147)
Q Consensus 167 ~~~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~----~~~~~~~~~~~l~~~~g~~~n 237 (1147)
+..+|+||++|++++++..+ +.|.+|+..++.+..|++|++|||+|+||+ +|+..+ +.+.+++. |+.+|
T Consensus 5 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~-~~~~l~~~-G~~~~ 82 (424)
T 3amj_B 5 EHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENA-IADRLADI-GARLG 82 (424)
T ss_dssp EEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHH-HHHHHHHT-TCEEE
T ss_pred EEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHH-HHHHHHHh-CCEEE
Confidence 45567899999999998754 457789999999999999999999999999 999766 88888764 66899
Q ss_pred cccCCCcceeecccCCHHHH--HHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChh
Q psy14715 238 AMTGPDYTFYPFSSQNHCDY--FNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNS 315 (1147)
Q Consensus 238 a~t~~d~t~y~~~~~~~~~~--~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~ 315 (1147)
|+|+.|+|.|.+.. .++++ +.+|+++.+++.+|.|++++|++| |+++.+|++...++|.
T Consensus 83 a~t~~~~t~~~~~~-~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e------------------~~~v~~e~~~~~~~p~ 143 (424)
T 3amj_B 83 GGAEADRASFSLRV-LSSPAERNSALTILRDILAHPTFPAPVLERE------------------RARAIAGLREAQTQPG 143 (424)
T ss_dssp EEECSSCEEEEEEE-ESSHHHHHHHHHHHHHHHHCBCCCHHHHHHH------------------HHHHHHHHHHHTTSHH
T ss_pred eecCCCeEEEEEEE-eccccChhHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHHhhcCHH
Confidence 99999999996544 34556 999999999999999999999999 9999999998888999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCC
Q psy14715 316 YIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHH 395 (1147)
Q Consensus 316 ~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~ 395 (1147)
.++.+.+.+.+|++|||+++. ++++|++++.++|++||++||+|+||+++|+||+|++++++++++ +|+.|+.....
T Consensus 144 ~~~~~~~~~~~~~~~p~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~-~f~~~~~~~~~ 220 (424)
T 3amj_B 144 SILGRRFTELAYGKHPYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQ-LTADLPAGATL 220 (424)
T ss_dssp HHHHHHHHHHHHTTSGGGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHH-TTTTSCCCCCC
T ss_pred HHHHHHHHHhcCCCCCCCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHH-HHhcCCCCCCC
Confidence 999999999999999999876 899999999999999999999999999999999999999999997 99999865322
Q ss_pred CCCCcCCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCC-CChHhhHHHHhcCCCC
Q psy14715 396 RSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKG-PNAPFYKNLVESGLGL 474 (1147)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~-~~s~L~~~lre~~~~~ 474 (1147)
+. .+ .++...+....+. .+..++.+.++|++|...+ ++..++.+++.+|+++ .+|||++.||++ .|.
T Consensus 221 ~~---~~-~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~-~~~~~~~vl~~iLg~~~~~srL~~~lR~~-~gl 288 (424)
T 3amj_B 221 PP---LP-DPAMPRATVERIA------NPATQAHIAIGMPTLKRGD-PDFFPLVVGNYALGGGGFESRLMKEIRDK-RGL 288 (424)
T ss_dssp CC---CC-CCCCCCCEEEEEE------CSSSEEEEEEEEEEEBTTC-TTHHHHHHHHHHHTTSGGGSHHHHHHTTT-TCC
T ss_pred CC---CC-CCCCCCCceEEee------CCCCccEEEeeccCCCCCC-cchHHHHHHHHHhCCCCccchhHHHHHHh-CCe
Confidence 11 11 1122233333332 2357889999999877655 7889999999999987 999999999985 344
Q ss_pred CccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHH
Q psy14715 475 SFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVI 554 (1147)
Q Consensus 475 ~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~ 554 (1147)
.|++++++......+.|.+++. +++++.+++++ .+.++|++++
T Consensus 289 ~y~v~~~~~~~~~~g~~~i~~~-~~~~~~~~~~~------------------------------------~i~~~l~~l~ 331 (424)
T 3amj_B 289 SYGAYSYFSPQKSMGLFQIGFE-TRAEKADEAVQ------------------------------------VANDTLDAFL 331 (424)
T ss_dssp EEEEEEEECCBSSCEEEEEEEE-EESTTHHHHHH------------------------------------HHHHHHHHHH
T ss_pred EEEeeeeeccCCCceeEEEEEE-eCcccHHHHHH------------------------------------HHHHHHHHHH
Confidence 5777676666556688888884 78889999888 9999999999
Q ss_pred HcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHhccC
Q psy14715 555 AEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNN 634 (1147)
Q Consensus 555 ~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l~~~ 634 (1147)
+.|++++||+++|+.+..++.....+.+ .++..+...+.++.++.....+.+.++.+ |++||++++++||. +
T Consensus 332 ~~~~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v------t~~dv~~~a~~~l~-~ 403 (424)
T 3amj_B 332 REGPTDAELQAAKDNLINGFALRLDSNA-KILGQVAVIGYYGLPLDYLDHYTERVQAV------TVEQVREAFARHVK-R 403 (424)
T ss_dssp HHCCCHHHHHHHHHHHHHTSGGGGSSHH-HHHHHHHHHHHTTCCTTTTTSHHHHHHTC------CHHHHHHHHHHHCC-G
T ss_pred hcCCCHHHHHHHHHHHHhhhhHhcCCHH-HHHHHHHHHHHcCCChhHHHHHHHHHHcC------CHHHHHHHHHHhcC-c
Confidence 9999999999999999999876544433 56666666666665554443444444444 45999999999998 4
Q ss_pred CCeEEEEEecCcC
Q psy14715 635 PHKLIITMSPEKT 647 (1147)
Q Consensus 635 ~~~~~~~~~p~~~ 647 (1147)
++.+++++.|...
T Consensus 404 ~~~~~~~~~~~~~ 416 (424)
T 3amj_B 404 ENLITVVVGGKAS 416 (424)
T ss_dssp GGCEEEEEECC--
T ss_pred cceEEEEECChhh
Confidence 5677777887643
No 12
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=1.1e-43 Score=424.61 Aligned_cols=405 Identities=14% Similarity=0.130 Sum_probs=318.6
Q ss_pred eEEEEecccceEEEeecCCCC----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCccccC
Q psy14715 166 IKLQHVKTLAEYFHLSRDDSN----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTG 241 (1147)
Q Consensus 166 ~~~~~l~NG~~v~~~~~~~~~----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~ 241 (1147)
++..+|+||++|++.+.+.+. ++|++|++.|++++.|+|||+|||+|+||++||..+ +.+.++. .|+.+||+|+
T Consensus 6 ~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~-~~~~le~-~G~~~na~t~ 83 (475)
T 1hr6_A 6 FKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA-MAETLEL-LGGNYQCTSS 83 (475)
T ss_dssp CEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHH-HHHHHHH-TTSCEEEEEC
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHH-HHHHHHH-cCCEEEEEEc
Confidence 466778999999998766542 467789999999999999999999999999999766 7777765 5668999999
Q ss_pred CCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHHHH
Q psy14715 242 PDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGEA 321 (1147)
Q Consensus 242 ~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~ 321 (1147)
.|+|+|++ ++.+++++.+|+++.|++.+|.|++++|++| |++|.+|++...++|..++.+.
T Consensus 84 ~d~t~y~~-~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e------------------r~~v~~e~~~~~~~p~~~~~~~ 144 (475)
T 1hr6_A 84 RENLMYQA-SVFNQDVGKMLQLMSETVRFPKITEQELQEQ------------------KLSAEYEIDEVWMKPELVLPEL 144 (475)
T ss_dssp SSCEEEEE-EECGGGHHHHHHHHHHHHHCBCCCHHHHHHH------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCeEEEEE-EecHHHHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHHhhcCHHHHHHHH
Confidence 99999954 4467889999999999999999999999999 9999999999889999999999
Q ss_pred HHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCCcC
Q psy14715 322 LMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAV 401 (1147)
Q Consensus 322 ~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~ 401 (1147)
+.+.+|++|||+++.+|+++.|++++.++|++||++||+|+||+++|+| +|++++++++++ +|+.|+.....+. .
T Consensus 145 ~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~-~f~~~~~~~~~~~---~ 219 (475)
T 1hr6_A 145 LHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGK-YLGDWQSTHPPIT---K 219 (475)
T ss_dssp HHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHH-HHTTCCCCCCCCC---C
T ss_pred HHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHH-HhccCCCCCCCCC---C
Confidence 9999999999999999999999999999999999999999999999999 999999999997 9999986532111 1
Q ss_pred CCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCC-----------CChHhhHHHHhc
Q psy14715 402 LPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKG-----------PNAPFYKNLVES 470 (1147)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~-----------~~s~L~~~lre~ 470 (1147)
..+++. +....+........+.+++.+.++|++++..+ ++.+++.+++.||+++ ++|+|++.||++
T Consensus 220 -~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~ 296 (475)
T 1hr6_A 220 -KVAQYT-GGESCIPPAPVFGNLPELFHIQIGFEGLPIDH-PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQ 296 (475)
T ss_dssp -CCCCCC-CEEEEECCCCCCSSSCCCEEEEEEEECCCTTC-TTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTT
T ss_pred -CCCCCc-CCeEEEecccccCCCccceEEEEEEecCCCCC-ccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHh
Confidence 112222 22222221000002356789999999776655 7889999999999864 569999999976
Q ss_pred CCCCCccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHH
Q psy14715 471 GLGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTI 550 (1147)
Q Consensus 471 ~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 550 (1147)
.+..|++++++..+...+.|.+++. +++++.+++++ .+.+++
T Consensus 297 -~gl~y~v~s~~~~~~~~g~~~i~~~-~~~~~~~~~~~------------------------------------~~~~~l 338 (475)
T 1hr6_A 297 -YYFVENCVAFNHSYSDSGIFGISLS-CIPQAAPQAVE------------------------------------VIAQQM 338 (475)
T ss_dssp -CSSEEEEEEEEEECSSCEEEEEEEE-ECGGGHHHHHH------------------------------------HHHHHH
T ss_pred -cCCeeEEEEeccccCCCceEEEEEE-eCHHHHHHHHH------------------------------------HHHHHH
Confidence 3445776666555556689999884 78889998888 999999
Q ss_pred HHHHH---cCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhc-cCCChhHhhhHHHHHHHHHHHhhcCccHHHHH
Q psy14715 551 DEVIA---EGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMN-HDCDVIHLLHINDRLNWFKKHIQENPTYLQEK 626 (1147)
Q Consensus 551 ~~l~~---~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 626 (1147)
+++++ .|++++||+++|+.+..++.....+.. ..+..++..++ ++. +... .+..+.+.+ +|++||+++
T Consensus 339 ~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~---~~~~~~i~~---vt~~dv~~~ 410 (475)
T 1hr6_A 339 YNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKL-VELEDMGRQVLMHGR-KIPV---NEMISKIED---LKPDDISRV 410 (475)
T ss_dssp HTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHSC-CCCH---HHHHHHHHT---CCHHHHHHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcCC-CCCH---HHHHHHHHc---CCHHHHHHH
Confidence 99987 789999999999999999876544333 35555555443 333 2222 233444444 366999999
Q ss_pred HHHHhccC--------CCeEEEEEecC
Q psy14715 627 VDEYLRNN--------PHKLIITMSPE 645 (1147)
Q Consensus 627 ~~~~l~~~--------~~~~~~~~~p~ 645 (1147)
+++||.++ .+..++++.|.
T Consensus 411 a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 411 AEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHhhhccccccccCCCcEEEEECCc
Confidence 99999831 24555566654
No 13
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-41 Score=397.87 Aligned_cols=385 Identities=13% Similarity=0.107 Sum_probs=311.4
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.+++||++|++.+.+..+.+++.+++++|+..+ +..|.+|+++||++ +||++++..++.+.++.+||.++++++
T Consensus 5 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf-~Gt~~~~~~~~~~~l~~~G~~~na~t~--- 80 (406)
T 3eoq_A 5 AELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVF-KGPEDMDALAVNRAFDRMGAQYNAFTS--- 80 (406)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHT-TCCTTCCHHHHHHHHHHTTCEEEEEEC---
T ss_pred EEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCccceec---
Confidence 467899999999999889999999999998544 45688899999999 999999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCchh
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVS 871 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 871 (1147)
.+.+.|++++++++++.+++++.+++ +|.| +.+.+...+...++++..... .+...+...+...+++++
T Consensus 81 --------~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f-~~~~~~~ek~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~ 149 (406)
T 3eoq_A 81 --------EEATVYYGAVLPEFAYDLLGLFAKLL-RPAL-REEDFQTEKLVILEEIARYQD-RPGFMAYEWARARFFQGH 149 (406)
T ss_dssp --------SSCEEEEEEECGGGHHHHHHHHHHHT-SCCC-CHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTC
T ss_pred --------CCeEEEEEEecHHHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Confidence 77899999999999999999999999 9999 444444444333333333222 344455555555556666
Q ss_pred hhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCCcc
Q psy14715 872 EQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQTV 950 (1147)
Q Consensus 872 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~~~ 950 (1147)
++.....| ..+.|+.++ .++|++||+++|+|+||+++|+||++ +++.++++++|+.|+..+.+.+ .
T Consensus 150 p~~~~~~G--~~~~i~~~t--------~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~---~ 216 (406)
T 3eoq_A 150 PLGNSVLG--TRESITALT--------REGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA---Y 216 (406)
T ss_dssp GGGCCSSC--CHHHHHHCC--------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC---C
T ss_pred CCCCCCcC--CHHHHhhCC--------HHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC---C
Confidence 66654433 456788886 79999999999999999999999999 9999999999999986543221 1
Q ss_pred cccccCccceeEEEecc-cccEEEEEecCCCCCCCchhHHHHHHHhhc---CccchhhHhccCC-ccccccccCC---Cc
Q psy14715 951 HSFNVSGIQKVSHVLPF-PVNFTAKSLRGVPFLHKDYVALKVLSKFLT---TKYLLREVREKNG-AYGAGAVVSP---SG 1022 (1147)
Q Consensus 951 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~~al~vl~~iLg---~srL~~~lRek~g-aY~v~~~~~~---~g 1022 (1147)
+...+.. +...+..+. +++++.++|++++..+++++++.|++.+|| +||||++||| .| +|++++++.. .|
T Consensus 217 ~~~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre-~gl~y~~~s~~~~~~~~g 294 (406)
T 3eoq_A 217 PPLTPAF-GVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVD-KGLAEVASFGLEEADRAG 294 (406)
T ss_dssp CCCCCCC-EEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTT-TTSEEEEEEEEEECSSCE
T ss_pred CCCCCCC-ceEEEecCCccceEEEEEecCCCCCCchHHHHHHHHHHhCCCcchHHHHHHHH-cCCeeEEEEEecccCCce
Confidence 1112222 334555677 789999999999999999999999999998 4899999999 76 9999988754 68
Q ss_pred eEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHHHcCCCHHHHHHHHH
Q psy14715 1023 VIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKFLYGKTDEMIEQYRL 1097 (1147)
Q Consensus 1023 ~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1097 (1147)
.|.+++.+++ +..++++.+.++++++++.++|++||++||+.+++++ +++...+..+...++++.+++..+++.+
T Consensus 295 ~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (406)
T 3eoq_A 295 TFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKA 374 (406)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred EEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 8888887666 5789999999999999988999999999999999986 5555555666666666556666789999
Q ss_pred HHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCC
Q psy14715 1098 SVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1098 ~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~ 1133 (1147)
.|++||++||+++|++|+.+++ .++++||..
T Consensus 375 ~i~~vt~~dv~~~a~~~l~~~~-----~~~vvGp~~ 405 (406)
T 3eoq_A 375 RVQRVTSREVNALLERGFLEKG-----LYYLVLPHG 405 (406)
T ss_dssp HHHHCCHHHHHHHHHTTTTTSC-----EEEEEECCC
T ss_pred HHHhCCHHHHHHHHHHhcCccc-----EEEEECCCC
Confidence 9999999999999999998754 389999974
No 14
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.6e-41 Score=405.41 Aligned_cols=397 Identities=10% Similarity=0.094 Sum_probs=295.2
Q ss_pred eEEEEecccceEEEeecCCC-------CceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhh---hcCCC
Q psy14715 166 IKLQHVKTLAEYFHLSRDDS-------NNVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTR---SMATF 235 (1147)
Q Consensus 166 ~~~~~l~NG~~v~~~~~~~~-------~~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~---~~g~~ 235 (1147)
++..+|+||++|+++++++. .++|++|++.|++++.|+|||+|||+|+||++||..+ +.+++++ .+|+.
T Consensus 26 ~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~-~~~~~~~~~~~~G~~ 104 (492)
T 3go9_A 26 WQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQ-LQSLWQQGIDNERPL 104 (492)
T ss_dssp EEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHH-HHHHHHTCSCSSSCC
T ss_pred eEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHhcCCC
Confidence 56777899999999988642 1467889999999999999999999999999999865 7766554 36778
Q ss_pred CccccCCCcceeecccCCH--HHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCC
Q psy14715 236 MNAMTGPDYTFYPFSSQNH--CDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSD 313 (1147)
Q Consensus 236 ~na~t~~d~t~y~~~~~~~--~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ 313 (1147)
+||+|+.|+|+|++..... ++++.+|+++.|++.+|.|++++|++| |+++.+|++...++
T Consensus 105 ~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e------------------r~~~~~~~~~~~~~ 166 (492)
T 3go9_A 105 PPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAA------------------LNTATDPIATFPQN 166 (492)
T ss_dssp CSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHH------------------HTCSSCCEEESSSC
T ss_pred cceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHhcccc
Confidence 9999999999997665432 789999999999999999999999999 99888999887777
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCC
Q psy14715 314 NSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQ 393 (1147)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~ 393 (1147)
|....+ ...+++.++|+++.+| +.|.+++.++|++||++||+|+||+|+|+||+|++++++++++ +|++|+...
T Consensus 167 ~~~~~~---~~~~~~~~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~-~f~~~~~~~ 240 (492)
T 3go9_A 167 IQEPWW---RYRLKGSSLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISK-AFSELKGKR 240 (492)
T ss_dssp TTCHHH---HHHTTTSTTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH-HHTTCCCCC
T ss_pred hhhHHH---HHHhccCCcccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHH-HhhcCCCCC
Confidence 765433 3456777777776654 6899999999999999999999999999999999999999996 999998753
Q ss_pred CCCCCCcCCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCC--H---HHHHHHHHHHHHhcCCCChHhhHHHH
Q psy14715 394 HHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDN--F---KDVFVLNILGDLLLKGPNAPFYKNLV 468 (1147)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~--~---~~~~~l~vl~~iL~~~~~s~L~~~lr 468 (1147)
..+. ..+..++...+....+. .+..++.+.++|++|...+ . .++++..+++.+|+ ++|+..||
T Consensus 241 ~~~~--~~~~~~~~~~~~~~~~~------~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg----~~L~~~lr 308 (492)
T 3go9_A 241 TAPA--AVATLAPLPPEPVSLMN------EQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF----WHIKQVLE 308 (492)
T ss_dssp SSCC--CCCCCCCCCSSCEEEEE------SSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred CCCC--CCCCCCCCCCCceEEEc------CCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 2111 01222222233333333 3467899999999986543 1 23445689999996 59999999
Q ss_pred h--cCCCCCccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHH
Q psy14715 469 E--SGLGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAV 546 (1147)
Q Consensus 469 e--~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 546 (1147)
+ + .+..|++++++......+.|.++ +++++.+++++ .+
T Consensus 309 e~~~-~gl~y~~~s~~~~~~~~~~~~i~---~~~~~~~~a~~------------------------------------~i 348 (492)
T 3go9_A 309 KNNQ-KNLKLGFDCRVQYQRAQCAIHLN---TPVENLTANMT------------------------------------FV 348 (492)
T ss_dssp HSCC-TTCEEEEEEEEETTEEEEEEEEE---ECGGGHHHHHH------------------------------------HH
T ss_pred Hhhc-cccccccCchhhhhhcceEEEEE---cCcccHHHHHH------------------------------------HH
Confidence 8 4 45556665555444344455554 36889999988 99
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhhcccC----CchHHHHHHhhhhhccC---CChhHhhhHHHHH-HHHHHHhhc
Q psy14715 547 NKTIDEVIAEGFDKERVASVLHSLELSLKHQSS----NFGLNLLFWLVPFMNHD---CDVIHLLHINDRL-NWFKKHIQE 618 (1147)
Q Consensus 547 ~~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~-~~l~~~~~~ 618 (1147)
.++|++++++||+++||+++|+.+..++....+ .....++..++..+..+ ..|.++. +.+ +.+.+ +
T Consensus 349 ~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~---v 422 (492)
T 3go9_A 349 ARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQ---KLRQAFLSG---L 422 (492)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHH---HHHHHHHHH---C
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHH---HHHHHHHhc---C
Confidence 999999999999999999999999998764321 11223555554444332 2344432 222 22444 3
Q ss_pred CccHHHHHHHHHhccCCCeEEEEEecCcC
Q psy14715 619 NPTYLQEKVDEYLRNNPHKLIITMSPEKT 647 (1147)
Q Consensus 619 ~~~~v~~~~~~~l~~~~~~~~~~~~p~~~ 647 (1147)
|+++|++++++||. ++.. ++++.|...
T Consensus 423 T~edV~~~a~~~l~-~~~~-~vvvg~~~~ 449 (492)
T 3go9_A 423 TLAELNRELKQQLS-QDTT-LVLMQPKGE 449 (492)
T ss_dssp CHHHHHHHHHHHHT-SCCE-EEEEEETTS
T ss_pred CHHHHHHHHHHHhC-CCCe-EEEEcCCCC
Confidence 55999999999998 4444 455555544
No 15
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.4e-40 Score=392.24 Aligned_cols=387 Identities=15% Similarity=0.152 Sum_probs=308.7
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.+++||++|++.+.++.+++++.++|++|+..+ +..|++|+++||++ +||++++..++.+.++.+||+++++++
T Consensus 5 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf-~gt~~~~~~~~~~~l~~~G~~~na~t~--- 80 (421)
T 3hdi_A 5 MTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFF-KGTNTRSAQEIAEFFDSIGGQVNAFTS--- 80 (421)
T ss_dssp EECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTT-SBBSSSBHHHHHHHHHTTTSCEEEEEC---
T ss_pred EEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhc-CCCCCCCHHHHHHHHHHhCCceeeeec---
Confidence 467899999999999999999999999998654 45688899999999 899999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCc
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLT--DLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDP 869 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (1147)
.+.+.|++++++++++.+++++.+++.+|.|+ +.++++.++.++++...+ .+...+...+...+++
T Consensus 81 --------~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~----~p~~~~~~~~~~~~~~ 148 (421)
T 3hdi_A 81 --------KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDD----TPDDIVHDLLSSATYG 148 (421)
T ss_dssp --------SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHT
T ss_pred --------cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhC----CHHHHHHHHHHHHhcC
Confidence 67889999999999999999999999999993 234444454444443322 2334444455555555
Q ss_pred hhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCChHHHHHHHhhcCCCCCCCCCCCc
Q psy14715 870 VSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQSNAPERLESFLQSIPGDFTSQPGQT 949 (1147)
Q Consensus 870 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~~~~~~~v~~~~~~l~~~~~~~~~~~ 949 (1147)
++++.....| ..+.|+.++ .++|++||+++|+|+|++++|+||+++++.++++++|+.|+......+..
T Consensus 149 ~~p~~~~~~G--~~~~l~~it--------~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~v~~~f~~~~~~~~~~~~~- 217 (421)
T 3hdi_A 149 KHSLGYPILG--TVETLNSFN--------EGMLRHYMDRFYTGDYVVISVAGNVHDELIDKIKETFSQVKPTTYNYQGE- 217 (421)
T ss_dssp TSGGGSCTTC--CHHHHHHCC--------HHHHHHHHHHHSSTTTEEEEEEESCCHHHHHHHHHHTTSSCCCCCCCCCC-
T ss_pred CCCCCCCCcC--CHHHHHhCC--------HHHHHHHHHHhcCcccEEEEEEeCCCHHHHHHHHHHhcCCCCCCCCCCCC-
Confidence 6555543333 456778876 79999999999999999999999999668899999999998765432211
Q ss_pred ccccccCccceeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhcC---ccchhhHhccCC-ccccccccCC---Cc
Q psy14715 950 VHSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTT---KYLLREVREKNG-AYGAGAVVSP---SG 1022 (1147)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~---srL~~~lRek~g-aY~v~~~~~~---~g 1022 (1147)
.+... . .......+.+++++.++++++++++++++++.|++.+||+ ||||++|||+.| +|++++++.. .|
T Consensus 218 ~~~~~--~-~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g 294 (421)
T 3hdi_A 218 KPMFL--P-NRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSG 294 (421)
T ss_dssp CCCCC--C-CEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCE
T ss_pred CCCCC--C-ceEEecCCCCceEEEEEEecCCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCc
Confidence 12111 1 2334445667889999999999999999999999999984 899999999987 9999987654 78
Q ss_pred eEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHHHcCCCHHHHHHHHH
Q psy14715 1023 VIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKFLYGKTDEMIEQYRL 1097 (1147)
Q Consensus 1023 ~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1097 (1147)
.|.+++.++| +.+++++.+.++++++++.++|++||++||..+++++ +++...+..+....+.+...+..+++.+
T Consensus 295 ~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (421)
T 3hdi_A 295 MLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIE 374 (421)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 8888877666 6889999999999999999999999999999999885 3333334444444444334455678999
Q ss_pred HHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCCC
Q psy14715 1098 SVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSNN 1135 (1147)
Q Consensus 1098 ~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~~ 1135 (1147)
.|++||++||+++|++|+ +++. +++++||...-
T Consensus 375 ~i~~vt~~dv~~~a~~~~-~~~~----~~~vvgp~~~i 407 (421)
T 3hdi_A 375 QINAVQKQDVSRLAKILL-SASP----SISLINANGEL 407 (421)
T ss_dssp HHHHCCHHHHHHHHHHHT-TSCC----EEEEEESSCSC
T ss_pred HHHcCCHHHHHHHHHHHc-ccCc----EEEEECchhcC
Confidence 999999999999999999 7776 89999998663
No 16
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.6e-41 Score=402.90 Aligned_cols=396 Identities=10% Similarity=0.078 Sum_probs=318.4
Q ss_pred eeEEEEecccceEEEeecCCCC----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCcccc
Q psy14715 165 AIKLQHVKTLAEYFHLSRDDSN----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMT 240 (1147)
Q Consensus 165 ~~~~~~l~NG~~v~~~~~~~~~----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t 240 (1147)
.++..+|+||++|+++++..+. +.|.+|+..++++..|++|++|||+|+||++|+..+ +.+.++. .|+.+||+|
T Consensus 23 ~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~-~~~~l~~-~G~~~na~t 100 (439)
T 1pp9_B 23 DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFK-ITRGIEA-VGGKLSVTS 100 (439)
T ss_dssp CCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHH-HHHHHHH-TTCEEEEEE
T ss_pred CceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHH-HHHHHHH-hCCeEEEEe
Confidence 3456678899999999993322 456779999999999999999999999999999766 7787865 466899999
Q ss_pred CCCcceeecccCCHHHHHHHHHHHhhhccCCCCCcccccccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHHH
Q psy14715 241 GPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGE 320 (1147)
Q Consensus 241 ~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~ 320 (1147)
+.++|.|.+ ++..++++.+|+++.+++.+|.|++++|++| |+++.+|++...++|..++.+
T Consensus 101 ~~~~t~~~~-~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~------------------k~~v~~e~~~~~~~p~~~~~~ 161 (439)
T 1pp9_B 101 TRENMAYTV-ECLRDDVDILMEFLLNVTTAPEFRRWEVAAL------------------QPQLRIDKAVALQNPQAHVIE 161 (439)
T ss_dssp CSSCEEEEE-EEEGGGHHHHHHHHHHHHHCBCCCHHHHHHH------------------HHHHHHHHHHHTTSHHHHHHH
T ss_pred cceEEEEEE-EeehhhHHHHHHHHHHHHhCCCCCHHHHHHH------------------HHHHHHHHHHHHcCHHHHHHH
Confidence 999999954 4567889999999999999999999999999 999999999888899999999
Q ss_pred HHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCCc
Q psy14715 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTA 400 (1147)
Q Consensus 321 ~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 400 (1147)
.+.+.+|+ |||+++.+|++++|++++.++|++||++||+|+||+++|+|| +++++++++++ +|+ |+.....+
T Consensus 162 ~~~~~~~~-~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~-~~~-~~~~~~~~---- 233 (439)
T 1pp9_B 162 NLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQ-FLN-IRGGLGLS---- 233 (439)
T ss_dssp HHHHHHBS-SGGGSCSSCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHH-HCC-CCCCC-CC----
T ss_pred HHHHHHhc-CCCCCCccCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHH-HhC-CCCCCCCC----
Confidence 99999999 999999999999999999999999999999999999999999 99999999996 999 87643211
Q ss_pred CCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCC--------CChHhhHHHHhc-C
Q psy14715 401 VLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKG--------PNAPFYKNLVES-G 471 (1147)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~--------~~s~L~~~lre~-~ 471 (1147)
+..+++. +....+. .+.+++.+.++|++|...+ ++..++.+++.+|+++ +++||++.||++ |
T Consensus 234 -~~~~~~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~-~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~g 304 (439)
T 1pp9_B 234 -GAKAKYH-GGEIREQ------NGDSLVHAALVAESAAIGS-AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVH 304 (439)
T ss_dssp -CCCCCBC-CEEEEEE------CCCSEEEEEEEEECCCTTS-HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCC
T ss_pred -CCCCCCc-CCeEEec------CCccceEEEEEecCCCCCc-hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcC
Confidence 1111221 2222222 2356889999999988766 7899999999999875 479999999965 5
Q ss_pred CCCCccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHH
Q psy14715 472 LGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTID 551 (1147)
Q Consensus 472 ~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 551 (1147)
++ |++++++......+.|.+++. +++++.+++++ .+.++++
T Consensus 305 l~--Y~~~~~~~~~~~~g~~~i~~~-~~~~~~~~~~~------------------------------------~~~~~l~ 345 (439)
T 1pp9_B 305 QP--FDVSAFNASYSDSGLFGFYTI-SQAASAGDVIK------------------------------------AAYNQVK 345 (439)
T ss_dssp SC--EEEEEEEEEETTEEEEEEEEE-EEGGGHHHHHH------------------------------------HHHHHHH
T ss_pred Cc--eEEEEeeccccccceEEEEEE-eCHHHHHHHHH------------------------------------HHHHHHH
Confidence 54 666665554445688888874 78889998888 9999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHh
Q psy14715 552 EVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYL 631 (1147)
Q Consensus 552 ~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l 631 (1147)
++++.|++++||+++|+.+..++.....+.. .++..+...+.+++++... ....+.+.+ +|++||++++++|+
T Consensus 346 ~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~i~~---vt~~dv~~~a~~~~ 418 (439)
T 1pp9_B 346 TIAQGNLSNPDVQAAKNKLKAGYLMSVESSE-GFLDEVGSQALAAGSYTPP---STVLQQIDA---VADADVINAAKKFV 418 (439)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHTSSHH-HHHHHHHHHHHHHSSCCCH---HHHHHHHHT---CCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhcCCCCCH---HHHHHHHhc---CCHHHHHHHHHHHh
Confidence 9999999999999999999999876544332 4666666666554444432 334444444 35699999999999
Q ss_pred ccCCCeEEEEEecCc
Q psy14715 632 RNNPHKLIITMSPEK 646 (1147)
Q Consensus 632 ~~~~~~~~~~~~p~~ 646 (1147)
. ++..++++.|..
T Consensus 419 ~--~~~~~~v~g~~~ 431 (439)
T 1pp9_B 419 S--GRKSMAASGNLG 431 (439)
T ss_dssp H--SCEEEEEEECGG
T ss_pred c--CCceEEEECCcc
Confidence 7 345666677654
No 17
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.9e-41 Score=401.30 Aligned_cols=390 Identities=12% Similarity=0.093 Sum_probs=312.1
Q ss_pred EEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCccccCCC
Q psy14715 169 QHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPD 243 (1147)
Q Consensus 169 ~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d 243 (1147)
.+|+||++|++++++..+ +.|.+|+..|++++.|++|++|||+|+|++++. + +..|+.+||+|+.|
T Consensus 4 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~~--------~-~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 4 TQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAV--------A-AKEGLALSSNISRD 74 (431)
T ss_dssp EEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHHHH--------H-HHTTCEEEEEECSS
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCccc--------H-HHcCCeeeeeecCC
Confidence 346799999999998654 456779999999999999999999999986531 3 44677899999999
Q ss_pred cceeecccCCHHHHHHHHHHHhhhccCCC---CCcccccccceeeeccCccCCCCCceeeeEEEecccccCCCh-hHHHH
Q psy14715 244 YTFYPFSSQNHCDYFNLMSIYLDAVFNPQ---LKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDN-SYIFG 319 (1147)
Q Consensus 244 ~t~y~~~~~~~~~~~~~l~~~~d~~~~p~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~-~~~~~ 319 (1147)
+|.|.+. +..++++.+|+++.|++.+|. |++++|++| |+++.+|++...++| ..++.
T Consensus 75 ~t~~~~~-~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~e------------------k~~v~~e~~~~~~~p~~~~~~ 135 (431)
T 3cx5_A 75 FQSYIVS-SLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT------------------KKSVLKQVQDFEDNDHPNRVL 135 (431)
T ss_dssp CEEEEEE-ECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHH------------------HHHHHHHHHHHHHHCHHHHHH
T ss_pred eEEEEEE-echhhHHHHHHHHHHHHhCcccccCCHHHHHHH------------------HHHHHHHHHhhhcCchhHHHH
Confidence 9999654 456789999999999999999 999999999 999999999877899 99999
Q ss_pred HHHHHhcCCCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhccCCCCCCCCCCC
Q psy14715 320 EALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSST 399 (1147)
Q Consensus 320 ~~~~~~l~~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~~~~~~~~~~~~~ 399 (1147)
+.+.+.+|++|||+++++|++++|++++.++|++||++||+|+||+++|+||+|++++++++++ +|++|+....+ .
T Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~-~~~~~~~~~~~-~-- 211 (431)
T 3cx5_A 136 EHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIES-KNLSLQTGTKP-V-- 211 (431)
T ss_dssp HHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTT-SCCCSSCSCCC-C--
T ss_pred HHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHH-HhCCCCCCCCC-C--
Confidence 9999999999999999999999999999999999999999999999999999999999999996 89999865321 1
Q ss_pred cCCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcC---------CCChHhhHHHHhc
Q psy14715 400 AVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLK---------GPNAPFYKNLVES 470 (1147)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~---------~~~s~L~~~lre~ 470 (1147)
.. .++...+....+.. .+.+++.+.++|++|...+ ++..++.+++.+|++ +.++||++.||++
T Consensus 212 -~~-~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~-~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~ 283 (431)
T 3cx5_A 212 -LK-KKAAFLGSEVRLRD-----DTLPKAWISLAVEGEPVNS-PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEY 283 (431)
T ss_dssp -CC-CCCCCCCEEEEEEC-----TTSSSEEEEEEEECCCTTC-TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTT
T ss_pred -CC-CCCcccCceEEEcC-----CCCCceEEEEEeecCCCCC-ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhc
Confidence 11 11111222222221 2356899999999987665 789999999999986 3679999999987
Q ss_pred CCCCCccccccccCCCcceEEEEEEeCCCC-CcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHH
Q psy14715 471 GLGLSFSPVTGYEASIHDTLFTVGLQGVDS-NKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKT 549 (1147)
Q Consensus 471 ~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 549 (1147)
|++ |++++++......+.|.+++. +++ ++.+++++ .+.++
T Consensus 284 gl~--y~v~~~~~~~~~~g~~~i~~~-~~~~~~~~~~~~------------------------------------~~~~~ 324 (431)
T 3cx5_A 284 QLC--DNFNHFSLSYKDSGLWGFSTA-TRNVTMIDDLIH------------------------------------FTLKQ 324 (431)
T ss_dssp TCC--SEEEEEEEECSSCEEEEEEEE-ESCTTCHHHHHH------------------------------------HHHHH
T ss_pred Cce--eeEeEeecccCCCceEEEEEe-eCchhhHHHHHH------------------------------------HHHHH
Confidence 655 666666554455688888874 777 89999998 99999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhhhc--ccCCchHHHHHHhhhhhc-cCCChhHhhhHHHHHHHHHHHhhcCccHHHHH
Q psy14715 550 IDEVIAEGFDKERVASVLHSLELSLKH--QSSNFGLNLLFWLVPFMN-HDCDVIHLLHINDRLNWFKKHIQENPTYLQEK 626 (1147)
Q Consensus 550 l~~l~~~g~~~~el~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 626 (1147)
++++++ |++++||+++|+.+..++.. ...+.. .++..+...++ ++. +... ....+.+.++ |++||+++
T Consensus 325 l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~---~~~~~~i~~v---t~~dv~~~ 395 (431)
T 3cx5_A 325 WNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPV-NDANLLGAEVLIKGS-KLSL---GEAFKKIDAI---TVKDVKAW 395 (431)
T ss_dssp HHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHH-HHHHHHHHHHHHHSS-CCCH---HHHHHHHHHC---CHHHHHHH
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHH-HHHHHHHHHHHhcCC-CCCH---HHHHHHHhcC---CHHHHHHH
Confidence 999998 99999999999999998877 544433 46666665543 343 2222 3334445443 56999999
Q ss_pred HHHHhccCCCeEEEEEecCcC
Q psy14715 627 VDEYLRNNPHKLIITMSPEKT 647 (1147)
Q Consensus 627 ~~~~l~~~~~~~~~~~~p~~~ 647 (1147)
+++|+. +++..++++.|...
T Consensus 396 a~~~l~-~~~~~~~v~g~~~~ 415 (431)
T 3cx5_A 396 AGKRLW-DQDIAIAGTGQIEG 415 (431)
T ss_dssp HHHHTT-TCCCEEEEEESCTT
T ss_pred HHHHcc-cCCcEEEEEcchhc
Confidence 999998 45567777888653
No 18
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=2.5e-39 Score=384.07 Aligned_cols=393 Identities=10% Similarity=0.068 Sum_probs=311.7
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCC--CCccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLS--PELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~--~~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.+++||++|++.+++..+.+.+.+++++|+.. ++..|.+|+++||++ +||++++..++.+.++.+|+.++++++
T Consensus 10 ~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf-~Gt~~~~~~~l~~~l~~~g~~~na~t~--- 85 (445)
T 3ami_A 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMF-KGTKDVGPGEFSKRVAAMGGRDNAFTT--- 85 (445)
T ss_dssp EECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTT-SCBSSSCTTHHHHHHHHTTCEEEEEEC---
T ss_pred EECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhc-CCCCCCCHHHHHHHHHHhCCccccccC---
Confidence 46789999999998888999999999999854 345688889999999 999999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCchh
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVS 871 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 871 (1147)
.+.+.|++++++++++.+|+++.+++.+|.| +.+.+...+....+++.....+.+...+...+...+++++
T Consensus 86 --------~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f-~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~ 156 (445)
T 3ami_A 86 --------RDYTAYYQQVPSSRLSDVMGLEADRMANLVV-DDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAH 156 (445)
T ss_dssp --------SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCC-CHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSS
T ss_pred --------CCeEEEEEECCHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCC
Confidence 7788999999999999999999999999999 5555555554444444422223344455555555556666
Q ss_pred hhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCCcc
Q psy14715 872 EQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQTV 950 (1147)
Q Consensus 872 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~~~ 950 (1147)
++.....| +.+.|+.++ .++|++||+++|+|+||+++|+||++ +++.++++++|+.||.+..+.+....
T Consensus 157 p~~~~~~G--~~e~l~~it--------~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~ 226 (445)
T 3ami_A 157 PYRVPVIG--WMNDIQNMT--------AQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQG 226 (445)
T ss_dssp GGGSCTTC--CHHHHHHCC--------HHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCC
T ss_pred CCCCCCCC--CHHHHhhCC--------HHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 66544333 456778876 79999999999999999999999999 99999999999999865432211101
Q ss_pred cccccCccceeEEEecccccEEEEEecCCC---CC-CCchhHHHHHHHhhcC---ccchhhHhccCC-ccccccccCC--
Q psy14715 951 HSFNVSGIQKVSHVLPFPVNFTAKSLRGVP---FL-HKDYVALKVLSKFLTT---KYLLREVREKNG-AYGAGAVVSP-- 1020 (1147)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~-~~d~~al~vl~~iLg~---srL~~~lRek~g-aY~v~~~~~~-- 1020 (1147)
.+...+. +...+..+..++++.++|+++. ++ +++++++.|++.+||+ |||+++||++.| +|++++++..
T Consensus 227 ~~~~~~~-~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~ 305 (445)
T 3ami_A 227 EPQQAGV-RRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLS 305 (445)
T ss_dssp CCCCCSC-EEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCC
T ss_pred CCCCCCc-eEEEEecCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccc
Confidence 1111111 2233334567788999998877 77 8899999999999983 899999998888 9999987752
Q ss_pred ---CceEEEEEeeCC--CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHHHcCCCHHH
Q psy14715 1021 ---SGVIQFYSYRDP--YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKFLYGKTDEM 1091 (1147)
Q Consensus 1021 ---~g~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~ 1091 (1147)
.|.|.+++.+.+ +.+++++.+.++++++++.+++++||+++|+.+++++ +++..++..+...+++|.+.++
T Consensus 306 ~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (445)
T 3ami_A 306 RGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRD 385 (445)
T ss_dssp SSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTH
T ss_pred cCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHH
Confidence 366777665544 3789999999999999988999999999999999886 3333444555566777878888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1092 IEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1092 ~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
..++.+.|++||++||+++|++||.+++. .++++||+..
T Consensus 386 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~~----~~~~~~p~~~ 424 (445)
T 3ami_A 386 DDRFYQQLRSVTAAEVKAAAARLLTDDTL----TVANLVPLPP 424 (445)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHTTSCSTTE----EEEEEEEECC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHcCcCCe----EEEEEccCcc
Confidence 89999999999999999999999988776 7899999765
No 19
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.3e-39 Score=385.72 Aligned_cols=392 Identities=14% Similarity=0.104 Sum_probs=316.3
Q ss_pred eeeeecCccEEEEecCCCCeEEEEEEEeCCCCCC-CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 713 TDKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP-ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 713 ~~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~-~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
..+++||++|++.+.++.+++++.+++++|+..+ +..|.++++++|++ .||++++..++.+.++..|++++++++
T Consensus 16 ~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~-~gt~~~~~~~l~~~l~~~g~~~~a~t~--- 91 (434)
T 3gwb_A 16 TWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLN-EGVAGKDVGAIAQGFEGLGADFGNGAY--- 91 (434)
T ss_dssp EEECTTCCEEEEEECCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGG-GEETTEEHHHHHHHHHTTTCEEEEEEC---
T ss_pred EEEcCCCeEEEEEECCCCCEEEEEEEEecccccCCcchhHHHHHHHHHh-cCcccCCHHHHHHHHHHhCCEEEeeec---
Confidence 3577899999999999889999999999998665 55677889999999 799999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEecccc--HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCc
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHN--NDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDP 869 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~--l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (1147)
.+++.|++++++++ ++.+++++.+++.+|.| +.+.++..+....+++.+. .+.+..++...+...+++
T Consensus 92 --------~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~~~~~~~~e~~~~-~~~p~~~~~~~~~~~~~~ 161 (434)
T 3gwb_A 92 --------KDMAVASLRSLSAVDKREPALKLFAEVVGKPTF-PADSLARIKNQMLAGFEYQ-KQNPGKLASLELMKRLYG 161 (434)
T ss_dssp --------SSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred --------CCeEEEEEEecCccccHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcC
Confidence 77899999999998 99999999999999999 5666766666666666554 334555555555555555
Q ss_pred hhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCC
Q psy14715 870 VSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQ 948 (1147)
Q Consensus 870 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~ 948 (1147)
++++.....| ..+.|+.++ .++|++||+++|+++|++++|+||++ +++.++++++|+.|+.++.+....
T Consensus 162 ~~~~~~~~~G--~~~~l~~it--------~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 231 (434)
T 3gwb_A 162 THPYAHASDG--DAKSIPPIT--------LAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIE 231 (434)
T ss_dssp TSTTSSCTTC--CTTTTTTCC--------HHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCC
T ss_pred CCCCCCCCCC--CHHHHHhCC--------HHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5555443333 233455554 79999999999999999999999999 999999999999998764322111
Q ss_pred cccccccCccceeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhc----CccchhhHhccCC-ccccccccCC---
Q psy14715 949 TVHSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLT----TKYLLREVREKNG-AYGAGAVVSP--- 1020 (1147)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg----~srL~~~lRek~g-aY~v~~~~~~--- 1020 (1147)
.+. .+.. ....+..+..++++.+++++++.++++++++.|++.+|| +|+||++|||+.| +|++++++..
T Consensus 232 -~~~-~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~ 308 (434)
T 3gwb_A 232 -QPA-EPKA-SIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQA 308 (434)
T ss_dssp -CCC-CCCC-EEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSS
T ss_pred -CCC-CCCC-ceEEEeCCCCceeEEecCcCCCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCC
Confidence 111 1111 334455677788999999999999999999999999987 3699999999977 9999998876
Q ss_pred CceEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhccC----CCChhhHHHHHHHcCCCHHHHHHH
Q psy14715 1021 SGVIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDA----PIPPGSKGMSKFLYGKTDEMIEQY 1095 (1147)
Q Consensus 1021 ~g~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~~----~~~~~~~~~~~~~~g~~~~~~~~~ 1095 (1147)
.|.|.+++.++| +..++++.+.++++++++.+++++||+++|..+++++.. +...+..+....++|.+.++.+++
T Consensus 309 ~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (434)
T 3gwb_A 309 RGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDF 388 (434)
T ss_dssp CCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred ceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHHHHH
Confidence 588888877666 578999999999999988899999999999999999733 233334444556788888889999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCCC
Q psy14715 1096 RLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSNN 1135 (1147)
Q Consensus 1096 ~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~~ 1135 (1147)
.+.|++||++||+++|++||.+++. .++++||+...
T Consensus 389 ~~~i~~vt~~dv~~~a~~~l~~~~~----~~~vvg~~~~~ 424 (434)
T 3gwb_A 389 MRQSQELTVEQVKAAMNKHLNVDKM----VIVSAGPTVAQ 424 (434)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGC----EEEEEECCCCC
T ss_pred HHHHHhCCHHHHHHHHHHhcChhhE----EEEEEcCcccc
Confidence 9999999999999999999998776 89999998663
No 20
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=7.6e-39 Score=380.13 Aligned_cols=387 Identities=16% Similarity=0.130 Sum_probs=309.4
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.++.||++|++.+.+..+++++.+++++|+..+ +..|++|+++||++ +||++++..++.+.++.+|++++++++
T Consensus 10 ~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~-~Gt~~~~~~~l~~~l~~~g~~~na~t~--- 85 (443)
T 1hr6_B 10 SKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAF-KGTQNRPQQGIELEIENIGSHLNAYTS--- 85 (443)
T ss_dssp EECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTT-SBBSSCBHHHHHHHHHHTTCEEEEEEC---
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhh-cCCCCCCHHHHHHHHHHcCCeEEEEEC---
Confidence 467899999999988878999999999998654 45688899999999 999999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCc
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTD--LNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDP 869 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (1147)
.+.+.|++++++++++.+++++.+++.+|.|++ .++++.++.+++....+ .++.++...+...+++
T Consensus 86 --------~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~----~~~~~~~~~~~~~~~~ 153 (443)
T 1hr6_B 86 --------RENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDK----MYDEVVFDHLHEITYK 153 (443)
T ss_dssp --------SSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTT
T ss_pred --------CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhC----ChHHHHHHHHHHHhcC
Confidence 678999999999999999999999999999932 24566666555554322 3456666666666666
Q ss_pred hhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCC
Q psy14715 870 VSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQ 948 (1147)
Q Consensus 870 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~ 948 (1147)
++++.....| +.+.|+.++ .++|++||+++|+|+|++++|+||++ +++.++++++|+.|+....+.+.+
T Consensus 154 ~~~~~~~~~g--~~~~i~~~~--------~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~ 223 (443)
T 1hr6_B 154 DQPLGRTILG--PIKNIKSIT--------RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLG 223 (443)
T ss_dssp TSGGGSCSSC--CHHHHHHCC--------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTT
T ss_pred CCCCCCCCcC--CHHHHhhCC--------HHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 6666543333 456778876 79999999999999999999999999 999999999999998654332211
Q ss_pred ----cccccccCccceeEEEe-cccccEEEEEecCCCCCCCchhHHHHHHHhhcC------------ccchhhHhccCC-
Q psy14715 949 ----TVHSFNVSGIQKVSHVL-PFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTT------------KYLLREVREKNG- 1010 (1147)
Q Consensus 949 ----~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~------------srL~~~lRek~g- 1010 (1147)
..+.+ .+ ....+.. +.+++++.++|+++++++++++++.|++.+||+ ||||++|||+.|
T Consensus 224 ~~~~~~~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~gl 300 (443)
T 1hr6_B 224 SPRGPLPVF-CR--GERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSL 300 (443)
T ss_dssp SCCSSCCCC-CC--EEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCS
T ss_pred cccCCCCCC-CC--CeEEeccCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCC
Confidence 01111 11 1222223 356789999999988999999999999999962 899999998887
Q ss_pred ccccccccCC---CceEEEEEeeC--C-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc----CCCChhhHHH
Q psy14715 1011 AYGAGAVVSP---SGVIQFYSYRD--P-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD----APIPPGSKGM 1080 (1147)
Q Consensus 1011 aY~v~~~~~~---~g~~~~~~~~~--~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~----~~~~~~~~~~ 1080 (1147)
+|++++.+.. .|.|.++++++ | +..++++.+.++++++++++++++||+++|..+++++. ++..+++.+.
T Consensus 301 ay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~ 380 (443)
T 1hr6_B 301 ANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIG 380 (443)
T ss_dssp CSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred eEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999887653 78888888777 6 78999999999999999888999999999999999873 3333334344
Q ss_pred HHH-HcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1081 SKF-LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1081 ~~~-~~g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
..+ .+|.+.+ .+++.+.|++||++||+++|++|+.+++. +++++||...
T Consensus 381 ~~~~~~g~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~----~~~v~g~~~~ 430 (443)
T 1hr6_B 381 RQVVTTGKRLS-PEEVFEQVDKITKDDIIMWANYRLQNKPV----SMVALGNTST 430 (443)
T ss_dssp HHHHHHSSCCC-HHHHHHHHHTCCHHHHHHHHHHHSSSCCE----EEEEEECGGG
T ss_pred HHHHhcCCcCC-HHHHHHHHHhCCHHHHHHHHHHHhccCCc----EEEEECCccc
Confidence 444 4676655 46788999999999999999999987666 8999999754
No 21
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-40 Score=391.37 Aligned_cols=386 Identities=12% Similarity=0.135 Sum_probs=304.5
Q ss_pred EEecccceEEEeecCCCC-----ceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCccccCCC
Q psy14715 169 QHVKTLAEYFHLSRDDSN-----NVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPD 243 (1147)
Q Consensus 169 ~~l~NG~~v~~~~~~~~~-----~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d 243 (1147)
.+|+||++|++++++..+ +.|.+|+..++ .|++|++|||+|+|+++||..+.+.+.+++.+|+.+||+|+.|
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 346799999999997643 56778886654 6999999999999999997665588888765577899999999
Q ss_pred cc----eeecccCCH------HHHHHHHHHHhhhccCCC-----CCcccccccceeeeccCccCCCCCceeeeEEEeccc
Q psy14715 244 YT----FYPFSSQNH------CDYFNLMSIYLDAVFNPQ-----LKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMK 308 (1147)
Q Consensus 244 ~t----~y~~~~~~~------~~~~~~l~~~~d~~~~p~-----~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~~e~~ 308 (1147)
.| .|++..... ++++.+|+++.+++.+|. |++++|++| |+++.+|++
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~------------------k~~v~~e~~ 144 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQRE------------------KENLKAYLE 144 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHH------------------HHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHH------------------HHHHHHHHH
Confidence 96 664544333 279999999999999999 999999999 999999999
Q ss_pred ccCCChhHHHHHHHHHhcC-CCCCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHHhHhhhc
Q psy14715 309 GAFSDNSYIFGEALMNNIL-PTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLS 387 (1147)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~-~~~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i~~~~f~ 387 (1147)
...++|..++.+.+.+.+| ++|||+++.+|++++|++++.++|++||++||+|+|++++|+||++++++++++ + +|+
T Consensus 145 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~-~~~ 222 (425)
T 3d3y_A 145 SIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-K-QLP 222 (425)
T ss_dssp HHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-H-TSC
T ss_pred HHhhCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-H-hCC
Confidence 8888999999999999999 889999999999999999999999999999999999999999999999999999 8 999
Q ss_pred cCCCCCCCCCCCcCCCCCCCCCCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCCCChHhhHHH
Q psy14715 388 KINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNL 467 (1147)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~~~s~L~~~l 467 (1147)
|+.....+. ..+...+........+.. .+.+++.+.++|+.|...+.++..++.+++.+|+++.+|||++.|
T Consensus 223 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~l 294 (425)
T 3d3y_A 223 -FTPREEGKA--AIFYNQPIRNVIEERTER-----EVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNV 294 (425)
T ss_dssp -CCCCCCCCC--CSCCCCCCCSSCEEEEEE-----EECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHT
T ss_pred -CCccccccc--cccccccCCCcceeEEec-----CCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHH
Confidence 986532111 011111111111111111 236789999999987433337899999999999999999999999
Q ss_pred HhcCCCCCccccccccCCCcceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHH
Q psy14715 468 VESGLGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVN 547 (1147)
Q Consensus 468 re~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 547 (1147)
|++ .|..|++++++.. ..+.|.+++ ++++++.+++++ .+.
T Consensus 295 Re~-~glaY~v~~~~~~--~~g~~~i~~-~~~~~~~~~~~~------------------------------------~~~ 334 (425)
T 3d3y_A 295 REK-EHLAYYASSSIDT--FRGFMTVQT-GIDGKNRNQVLR------------------------------------LIS 334 (425)
T ss_dssp TTT-SCCCSEEEEEEET--TTTEEEEEE-EECGGGHHHHHH------------------------------------HHH
T ss_pred HHh-cCeEEEEeccccc--cCceEEEEE-ecCHhhHHHHHH------------------------------------HHH
Confidence 976 2344776665543 357888887 578889999988 999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhhhcccCCchHHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHH
Q psy14715 548 KTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKV 627 (1147)
Q Consensus 548 ~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 627 (1147)
++++++++.|++++||+++|+.++.++.....+.. .++..+...+.+++.+.+. .+..+.+.++ |++||++++
T Consensus 335 ~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~---~~~~~~i~~v---t~edv~~~a 407 (425)
T 3d3y_A 335 TELENIRLGKIRELEIEQTKAMLKNQYILALDNAG-AWLEKEYLNELMPQTMLTA---EEWIARINAV---TIPEIQEVA 407 (425)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHSTTSCCCH---HHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHH-HHHHHHHHHHhhcCCCCCH---HHHHHHHHhC---CHHHHHHHH
Confidence 99999999999999999999999999876544333 5666666666662333333 3444555553 559999999
Q ss_pred HHHhc
Q psy14715 628 DEYLR 632 (1147)
Q Consensus 628 ~~~l~ 632 (1147)
++|+.
T Consensus 408 ~~~~~ 412 (425)
T 3d3y_A 408 KRLEL 412 (425)
T ss_dssp HHCEE
T ss_pred HhccC
Confidence 99875
No 22
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.1e-38 Score=378.53 Aligned_cols=386 Identities=11% Similarity=0.100 Sum_probs=308.4
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.++.||++|++.+.+ .+++++.++|+.|+..+ +..|++|+++||++ +||++++..++.+.++.+|++++++++
T Consensus 17 ~~L~NGl~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf-~GT~~~~~~~~~~~l~~~G~~~na~t~--- 91 (446)
T 1pp9_A 17 SQLDNGLRVASEQSS-QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAF-KGTKNRPGNALEKEVESMGAHLNAYST--- 91 (446)
T ss_dssp EECTTCCEEEEEECS-CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTT-SCBSSSTTTHHHHHHHHTTCEEEEEEC---
T ss_pred EECCCCCEEEEEeCC-CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhc-CCCCCCCHHHHHHHHHHcCCEEEEEEc---
Confidence 467899999998877 47999999999998654 46688899999999 899999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCc
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTD--LNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDP 869 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (1147)
.+.+.|++++++++++.+++++.+++.+|.|++ .++++.++.+++....+ .++.++...+...+++
T Consensus 92 --------~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~----~~~~~~~~~~~~~~~~ 159 (446)
T 1pp9_A 92 --------REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDT----SMRDVVFNYLHATAFQ 159 (446)
T ss_dssp --------SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTT
T ss_pred --------CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhc----CHHHHHHHHHHHHhcC
Confidence 667899999999999999999999999999932 34666666666654433 3455666666665666
Q ss_pred hhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCC
Q psy14715 870 VSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQ 948 (1147)
Q Consensus 870 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~ 948 (1147)
++++.....| ..+.|++++ .++|++||+++|+|+|++++|+||++ +++.++++++|+.|+....+.+..
T Consensus 160 ~~~~~~~~~G--~~~~l~~~~--------~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~ 229 (446)
T 1pp9_A 160 GTPLAQSVEG--PSENVRKLS--------RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVP 229 (446)
T ss_dssp TSGGGSCSSC--CHHHHHHCC--------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCC
T ss_pred CCCCCCCCcC--CHHHHHhCC--------HHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccc
Confidence 6666654433 456777776 79999999999999999999999999 999999999999998654332111
Q ss_pred cc-cccccCccceeEE-EecccccEEEEEecCCCCCCCchhHHHHHHHhhc------------CccchhhHhccCCcccc
Q psy14715 949 TV-HSFNVSGIQKVSH-VLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLT------------TKYLLREVREKNGAYGA 1014 (1147)
Q Consensus 949 ~~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg------------~srL~~~lRek~gaY~v 1014 (1147)
.. +....+ ....+ ..+.+++++.++++++++++++++++.|++.+|| +||||++||+++++|++
T Consensus 230 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~ 307 (446)
T 1pp9_A 230 TLSPCRFTG--SQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSF 307 (446)
T ss_dssp CCCCCCCCC--EEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEE
T ss_pred cCCCCCCCC--ceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEE
Confidence 00 111111 11222 2345688999999999899999999999999996 58999999987669999
Q ss_pred ccccCC---CceEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHH-Hc
Q psy14715 1015 GAVVSP---SGVIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKF-LY 1085 (1147)
Q Consensus 1015 ~~~~~~---~g~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~-~~ 1085 (1147)
++.+.. .|.|.++++++| +..++++.+.++++++.+ +++++||++||..+++++ +++...++.+...+ ++
T Consensus 308 ~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (446)
T 1pp9_A 308 QTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT-SATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTY 386 (446)
T ss_dssp EEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHT
T ss_pred EEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 887643 788888888777 689999999999999988 599999999999999986 44444444444444 56
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1086 GKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1086 g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
|.+.+ .+++.+.|.+||++||+++|++|+.+++. +++++||...
T Consensus 387 g~~~~-~~~~~~~i~~vt~edv~~~a~~~~~~~~~----~~~~~g~~~~ 430 (446)
T 1pp9_A 387 GRRIP-LAEWESRIAEVDARVVREVCSKYFYDQCP----AVAGFGPIEQ 430 (446)
T ss_dssp SSCCC-HHHHHHHHHTCCHHHHHHHHHHHTTTCCC----EEEEEESCTT
T ss_pred CCCCC-HHHHHHHHHcCCHHHHHHHHHHHcCCCCc----EEEEECCccc
Confidence 76554 56788999999999999999999987665 8999999765
No 23
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=5.8e-38 Score=370.34 Aligned_cols=387 Identities=13% Similarity=0.099 Sum_probs=308.5
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCC--CCCccccchhHHHHHhhcCCC----CCCHHHHHHHHHhhccceEEEe
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKL--SPELKPLVPLFNYVINQMRTK----NYDFREMDQLIHMSTGGISFNS 787 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~--~~~~~~~~~l~~~ll~~~Gt~----~~s~~el~~~ie~~g~~l~~~~ 787 (1147)
.++.||++|++.+++..+.+++.+++++|+. +++..|.+++++||++ .||+ +++..++.+.++.+|+++++++
T Consensus 7 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~-~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t 85 (424)
T 3amj_B 7 WTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMD-AGTGSGKSALDENAIADRLADIGARLGGGA 85 (424)
T ss_dssp EECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGG-GEECSTTSCEEHHHHHHHHHHTTCEEEEEE
T ss_pred EECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHH-hccCCCccCCCHHHHHHHHHHhCCEEEeec
Confidence 4678999999999998899999999999986 4456788899999999 7999 9999999999999999999999
Q ss_pred eeccCCCCCCcceeEEEEEEEeccccH--HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhc
Q psy14715 788 HLGESCSTPNGFEEAILVSSHCLEHNN--DKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASS 865 (1147)
Q Consensus 788 ~~~~~~~~~~~~~~~~~i~~~~l~~~l--~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 865 (1147)
+ .+++.|+++++++++ +.+++++.+++.+|.| +.+.++..+....+++.... +.+...+...+..
T Consensus 86 ~-----------~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~e~~~v~~e~~~~~-~~p~~~~~~~~~~ 152 (424)
T 3amj_B 86 E-----------ADRASFSLRVLSSPAERNSALTILRDILAHPTF-PAPVLERERARAIAGLREAQ-TQPGSILGRRFTE 152 (424)
T ss_dssp C-----------SSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCC-CHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHH
T ss_pred C-----------CCeEEEEEEEeccccChhHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHH
Confidence 7 677999999999998 9999999999999999 45444444444444443322 2445555555555
Q ss_pred cCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCC
Q psy14715 866 LVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTS 944 (1147)
Q Consensus 866 ~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~ 944 (1147)
.+++++++.... ..+.|+.++ .++|++||+++|+|+|++++|+||++ +++.++++++|+.|+....+
T Consensus 153 ~~~~~~p~~~~~----~~~~l~~it--------~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~ 220 (424)
T 3amj_B 153 LAYGKHPYGHVS----SVATLQKIS--------RDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATL 220 (424)
T ss_dssp HHHTTSGGGCCC----CHHHHHHCC--------HHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCC
T ss_pred hcCCCCCCCCCC----CHHHHHhCC--------HHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 555555554333 345677776 79999999999999999999999999 99999999999999865433
Q ss_pred CCCCcccccccCccceeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhcC----ccchhhHhccCC-ccccccccC
Q psy14715 945 QPGQTVHSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTT----KYLLREVREKNG-AYGAGAVVS 1019 (1147)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~----srL~~~lRek~g-aY~v~~~~~ 1019 (1147)
.+.. .+... .. ....+..+.+++++.+++++++.++++++++.|++.+||+ ||||++||++.| +|++++.+.
T Consensus 221 ~~~~-~~~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~ 297 (424)
T 3amj_B 221 PPLP-DPAMP-RA-TVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFS 297 (424)
T ss_dssp CCCC-CCCCC-CC-EEEEEECSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEEC
T ss_pred CCCC-CCCCC-CC-ceEEeeCCCCccEEEeeccCCCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeec
Confidence 2211 11111 11 2233344667788999999888889999999999999874 599999999887 999999876
Q ss_pred C---CceEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc----CCCChhhHHHHHHHcCCCHHH
Q psy14715 1020 P---SGVIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD----APIPPGSKGMSKFLYGKTDEM 1091 (1147)
Q Consensus 1020 ~---~g~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~ 1091 (1147)
. .|.+.+++.++| +..++++.+.++++++++.+++++||+++|+.+++++. ++...+..+...+++|.+.++
T Consensus 298 ~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (424)
T 3amj_B 298 PQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDY 377 (424)
T ss_dssp CBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTT
T ss_pred cCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhH
Confidence 5 577777776655 68899999999999999889999999999999999863 333334444555677888777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCC
Q psy14715 1092 IEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1092 ~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~ 1133 (1147)
.+++.+.|++||++||+++|++|+.+++. +++++||..
T Consensus 378 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~~----~~~~~~~~~ 415 (424)
T 3amj_B 378 LDHYTERVQAVTVEQVREAFARHVKRENL----ITVVVGGKA 415 (424)
T ss_dssp TTSHHHHHHTCCHHHHHHHHHHHCCGGGC----EEEEEECC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCccce----EEEEECChh
Confidence 88899999999999999999999998776 899999974
No 24
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=5.1e-37 Score=366.97 Aligned_cols=383 Identities=14% Similarity=0.119 Sum_probs=301.7
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.+++||++|++.+.+. +.+++.+++++|+..+ +..|++|+++||++ +||++++..++.+.++..|++++++++
T Consensus 9 ~~L~NGl~v~~~~~~~-~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f-~Gt~~~~~~~~~~~le~~G~~~na~t~--- 83 (475)
T 1hr6_A 9 SSLANGLKVATSNTPG-HFSALGLYIDAGSRFEGRNLKGCTHILDRLAF-KSTEHVEGRAMAETLELLGGNYQCTSS--- 83 (475)
T ss_dssp EECTTSCEEEEESCCC-SSEEEEEEESCCGGGCTTTTTTHHHHHHHTTT-SCBTTBCHHHHHHHHHHTTSCEEEEEC---
T ss_pred EECCCCCEEEEEeCCC-CEEEEEEEEccccCCCCCCCCcHHHHHHHHHh-CCCCCCCHHHHHHHHHHcCCEEEEEEc---
Confidence 4678999999998774 7899999999998654 55688899999999 899999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCc
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLT--DLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDP 869 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (1147)
.+.+.|++++++++++.+|++|.+++.+|.|+ +.++++.++.+++.... +.+...+...+...+++
T Consensus 84 --------~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~----~~p~~~~~~~~~~~~~~ 151 (475)
T 1hr6_A 84 --------RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVW----MKPELVLPELLHTAAYS 151 (475)
T ss_dssp --------SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTT
T ss_pred --------cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHhcC
Confidence 77899999999999999999999999999993 23455555555544322 24455666666666666
Q ss_pred hhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCC
Q psy14715 870 VSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQ 948 (1147)
Q Consensus 870 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~ 948 (1147)
++++.....| ..+.|++++ .++|++||+++|+|+|++++|+| ++ +++.++++++|+.|+....+.+..
T Consensus 152 ~~~~~~~~~G--~~~~l~~it--------~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~~~ 220 (475)
T 1hr6_A 152 GETLGSPLIC--PRGLIPSIS--------KYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITKK 220 (475)
T ss_dssp TSGGGSCSSC--CGGGGGGCC--------HHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred CCCCCCCCcC--CHHHHhhcC--------HHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6666654433 334566665 79999999999999999999999 99 999999999999998654321111
Q ss_pred cccccccCccceeEEE------ecccccEEEEEecCCCCCCCchhHHHHHHHhhcC--------------ccchhhHhcc
Q psy14715 949 TVHSFNVSGIQKVSHV------LPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTT--------------KYLLREVREK 1008 (1147)
Q Consensus 949 ~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~--------------srL~~~lRek 1008 (1147)
.+.+.. ....+. .+.+++++.++|+++++++++++++.|++.+||+ |+||++||++
T Consensus 221 -~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~ 296 (475)
T 1hr6_A 221 -VAQYTG---GESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQ 296 (475)
T ss_dssp -CCCCCC---EEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTT
T ss_pred -CCCCcC---CeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHh
Confidence 111111 112222 3456788999999888889999999999999973 7999999999
Q ss_pred CC-ccccccccCC---CceEEEEEeeCC-CHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhhhhc----cCCCChh
Q psy14715 1009 NG-AYGAGAVVSP---SGVIQFYSYRDP-YALETLATFDQSTQFLAD---TKLSVQDLDEAKLGVFKEV----DAPIPPG 1076 (1147)
Q Consensus 1009 ~g-aY~v~~~~~~---~g~~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~ite~el~~aK~~l~~~l----~~~~~~~ 1076 (1147)
.| +|++++.+.. .|.|.+++.++| +..++++.+.++++++.+ +++|++||++||+.+++++ +++...+
T Consensus 297 ~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~ 376 (475)
T 1hr6_A 297 YYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVEL 376 (475)
T ss_dssp CSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred cCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 87 9999987654 688888887777 678899999999999987 6899999999999999986 3333334
Q ss_pred hHHHHH-HHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---------ccccCCCeEEEEcCCC
Q psy14715 1077 SKGMSK-FLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSR---------DATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1077 ~~~~~~-~~~g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~---------~~~~~~~~~~vvG~~~ 1133 (1147)
..+... ..+|...+ .+++.+.|++||++||+++|++|+.+ .+. +++++|+..
T Consensus 377 ~~~~~~~~~~g~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~----~~~v~g~~~ 438 (475)
T 1hr6_A 377 EDMGRQVLMHGRKIP-VNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRA----TVVMQGDRG 438 (475)
T ss_dssp HHHHHHHHHHSCCCC-HHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCC----EEEEESCGG
T ss_pred HHHHHHHHhcCCCCC-HHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCc----EEEEECCcc
Confidence 444443 34676554 66789999999999999999999987 344 899999874
No 25
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.2e-36 Score=360.91 Aligned_cols=383 Identities=14% Similarity=0.095 Sum_probs=298.2
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.++.||++|++.+. ..+.+++.+++++|+..+ +..+.+++++||++ .||++++..++.+.++..|++++++++
T Consensus 27 ~~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~-~gt~~~~~~~~~~~l~~~G~~~na~t~--- 101 (439)
T 1pp9_B 27 TRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASS-LTTKGASSFKITRGIEAVGGKLSVTST--- 101 (439)
T ss_dssp EECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTT-SCBSSSCHHHHHHHHHHTTCEEEEEEC---
T ss_pred EECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhc-CCCCcCCHHHHHHHHHHhCCeEEEEec---
Confidence 46789999999999 789999999999998544 45688889999998 899999999999999999999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCchh
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVS 871 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 871 (1147)
.+++.|++++++++++.+++++.+++.+|.| +.+.++..+....+++... .+.++.++...+...+++ +
T Consensus 102 --------~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~-~ 170 (439)
T 1pp9_B 102 --------RENMAYTVECLRDDVDILMEFLLNVTTAPEF-RRWEVAALQPQLRIDKAVA-LQNPQAHVIENLHAAAYR-N 170 (439)
T ss_dssp --------SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCC-CHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHBS-S
T ss_pred --------ceEEEEEEEeehhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHhc-C
Confidence 7789999999999999999999999999999 4444444443333333332 224555555555555555 4
Q ss_pred hhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCCCcc
Q psy14715 872 EQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPGQTV 950 (1147)
Q Consensus 872 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~~~~ 950 (1147)
++.....| ..+.|+.++ .++|++||+++|+|+|++++|+|| + +++.++++++|+ |+......+. .
T Consensus 171 ~~~~~~~g--~~~~l~~it--------~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~~~--~ 236 (439)
T 1pp9_B 171 ALANSLYC--PDYRIGKVT--------PVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLSGA--K 236 (439)
T ss_dssp GGGSCSSC--CGGGTTTCC--------HHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CCCC--C
T ss_pred CCCCCccC--CHHHHhhcC--------HHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCCCC--C
Confidence 44433222 233455554 799999999999999999999999 9 999999999998 8764432111 1
Q ss_pred cccccCccceeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhc-----------CccchhhHhccCC-cccccccc
Q psy14715 951 HSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLT-----------TKYLLREVREKNG-AYGAGAVV 1018 (1147)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg-----------~srL~~~lRek~g-aY~v~~~~ 1018 (1147)
+.+. . ....+..+.+++++.++|+++++++++++++.|++.+|| +||||++|||+.| +|++++.+
T Consensus 237 ~~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~ 313 (439)
T 1pp9_B 237 AKYH--G-GEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFN 313 (439)
T ss_dssp CCBC--C-EEEEEECCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEE
T ss_pred CCCc--C-CeEEecCCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEee
Confidence 1111 1 223344566778899999998889999999999999997 3899999999988 99999887
Q ss_pred CC---CceEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHHHcCCCHH
Q psy14715 1019 SP---SGVIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKFLYGKTDE 1090 (1147)
Q Consensus 1019 ~~---~g~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~~~g~~~~ 1090 (1147)
.. .|.+.++++++| +..++++.+.++++++++.+++++||+++|..+++++ +++...+......++.+..++
T Consensus 314 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (439)
T 1pp9_B 314 ASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT 393 (439)
T ss_dssp EEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC
T ss_pred ccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC
Confidence 53 678888887776 6889999999999999988999999999999999985 333333444444445422334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1091 MIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1091 ~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
..+++.+.|++||++||+++|++|+. ++. +++++||.+.
T Consensus 394 ~~~~~~~~i~~vt~~dv~~~a~~~~~-~~~----~~~v~g~~~~ 432 (439)
T 1pp9_B 394 PPSTVLQQIDAVADADVINAAKKFVS-GRK----SMAASGNLGH 432 (439)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHH-SCE----EEEEEECGGG
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHhc-CCc----eEEEECCccc
Confidence 56789999999999999999999997 554 7899999764
No 26
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=6.6e-36 Score=353.01 Aligned_cols=390 Identities=13% Similarity=0.090 Sum_probs=300.1
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCCCccccchhHHHHHhhcCCCCC-CHHHHHHHHHhh-ccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNY-DFREMDQLIHMS-TGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~~~~~~~~l~~~ll~~~Gt~~~-s~~el~~~ie~~-g~~l~~~~~~~~ 791 (1147)
.++.||++|++.+.++.+.+++.++++.|+..+ ..+.+++++||++ .||+++ +..++.+.++.. |++++++++.+.
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e-~~g~a~ll~~~l~-~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~ 83 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHE-TITKRTLLSSLME-TNSLNYPNQVKLSERLAELYGASFGIGVSKKG 83 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTT-THHHHHHHHHHHH-HCCSSSCSHHHHHHHHHHTTSCEEEEEEEEET
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCcc-chhHHHHHHHHHH-hhhhcCCCHHHHHHHHHHHhCceEeeeeeecC
Confidence 567899999999998889999999999988543 3677899999999 999999 889999999998 999999997321
Q ss_pred CCCCCCcceeEEEEEEEeccc-------cHHHHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHHhhcccCcCcHHHH
Q psy14715 792 SCSTPNGFEEAILVSSHCLEH-------NNDKMFDVLSELFNNVQ-----LTDLNRFTTLVNTLSSELINGISGNGHRYA 859 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~-------~l~~~l~ll~~~l~~p~-----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 859 (1147)
....+.++++++++ +++.+++++.+++.+|. | +.+.++..+....+++.+. .+.++.++
T Consensus 84 -------t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f-~~~~~~~~k~~v~~e~~~~-~~~p~~~~ 154 (425)
T 3d3y_A 84 -------NQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQF-EAETFQREKENLKAYLESI-VEDKQTYA 154 (425)
T ss_dssp -------TEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEE-CHHHHHHHHHHHHHHHHHH-HHSHHHHH
T ss_pred -------ceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCC-CHHHHHHHHHHHHHHHHHH-hhCHHHHH
Confidence 13447999999997 69999999999999999 9 4544444444333333322 12355566
Q ss_pred HHHHhccCC-chhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhc
Q psy14715 860 MSIASSLVD-PVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQS 937 (1147)
Q Consensus 860 ~~~~~~~~~-~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~ 937 (1147)
...+...++ +++++.... ++..+.|+.++ .++|++||+++|.++|++++|+||++ +++.+++ ++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~--~g~~~~l~~~t--------~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~- 222 (425)
T 3d3y_A 155 SLALQSVYFNQSEDQKIPS--FGTVAALAEET--------AASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP- 222 (425)
T ss_dssp HHHHHHHHTTTCTTTTSCT--TCCHHHHHHCC--------HHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-
T ss_pred HHHHHHHhccCCCCccCCC--CCCHHHHHhCC--------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-
Confidence 555555555 555544322 23456777776 79999999999999999999999999 9999999 9999
Q ss_pred CCCCCCCCCCCcccccccC-ccceeEEEecccccEEEEEecCC-CCCCCchhHHHHHHHhhc---CccchhhHhccCC-c
Q psy14715 938 IPGDFTSQPGQTVHSFNVS-GIQKVSHVLPFPVNFTAKSLRGV-PFLHKDYVALKVLSKFLT---TKYLLREVREKNG-A 1011 (1147)
Q Consensus 938 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~~d~~al~vl~~iLg---~srL~~~lRek~g-a 1011 (1147)
|+......+.. ....+.. ..+......+.+++++.++|+.+ ++++++++++.|++.+|| +||||++|||+.| +
T Consensus 223 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~gla 301 (425)
T 3d3y_A 223 FTPREEGKAAI-FYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLA 301 (425)
T ss_dssp CCCCCCCCCCS-CCCCCCCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCC
T ss_pred CCccccccccc-cccccCCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeE
Confidence 98654321110 1111111 10122223356788999999974 788999999999999997 5899999999877 9
Q ss_pred cccccccCC-CceEEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHHHc
Q psy14715 1012 YGAGAVVSP-SGVIQFYSYRDP-YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKFLY 1085 (1147)
Q Consensus 1012 Y~v~~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~~~ 1085 (1147)
|++++.+.. .|.+.++++++| +..++++.+.++++++++.+++++||+++|..+++++ +++..++..+...++.
T Consensus 302 Y~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 3d3y_A 302 YYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELM 381 (425)
T ss_dssp SEEEEEEETTTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred EEEeccccccCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhh
Confidence 999998877 899888887777 6889999999999999988999999999999999985 4444444545555666
Q ss_pred -CCCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1086 -GKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1086 -g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
|...+ .+++.+.|++||++||+++|++|+. +. .++|+|+++.
T Consensus 382 ~g~~~~-~~~~~~~i~~vt~edv~~~a~~~~~-~~-----~~~v~g~~~~ 424 (425)
T 3d3y_A 382 PQTMLT-AEEWIARINAVTIPEIQEVAKRLEL-QA-----IFFLEGETEN 424 (425)
T ss_dssp TTSCCC-HHHHHHHHHHCCHHHHHHHHHHCEE-EE-----EEEEEEECCC
T ss_pred cCCCCC-HHHHHHHHHhCCHHHHHHHHHhccC-ce-----EEEEeCCCCC
Confidence 65543 6889999999999999999999874 33 5788887643
No 27
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=3.9e-35 Score=347.09 Aligned_cols=378 Identities=11% Similarity=0.088 Sum_probs=292.1
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeecc
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGE 791 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~ 791 (1147)
.++.||++|++.+++..+.+++.+++++|+..+ +..|.+|+++||++ .||.++ .++..|++++++++
T Consensus 4 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~-~gt~~~-------~~~~~G~~~na~t~--- 72 (431)
T 3cx5_A 4 TQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFL-SKENSA-------VAAKEGLALSSNIS--- 72 (431)
T ss_dssp EEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHT-SHHHHH-------HHHHTTCEEEEEEC---
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHh-cCCCcc-------cHHHcCCeeeeeec---
Confidence 467899999999999889999999999998543 56788899999999 687542 46889999999997
Q ss_pred CCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCC---CCC--hhHHHHHHHHHHHHhhcccCcCc-HHHHHHHHhc
Q psy14715 792 SCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQ---LTD--LNRFTTLVNTLSSELINGISGNG-HRYAMSIASS 865 (1147)
Q Consensus 792 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~---f~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~ 865 (1147)
.+++.|++++++++++.+|+++.+++.+|. |++ .++++.++.++++...+ .+ +.++...+..
T Consensus 73 --------~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~----~p~~~~~~~~~~~ 140 (431)
T 3cx5_A 73 --------RDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFED----NDHPNRVLEHLHS 140 (431)
T ss_dssp --------SSCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHH
T ss_pred --------CCeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhc----CchhHHHHHHHHH
Confidence 678899999999999999999999999999 932 33555555544443222 34 4555555555
Q ss_pred cCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCC
Q psy14715 866 LVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTS 944 (1147)
Q Consensus 866 ~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~ 944 (1147)
.+++++++..... +..+.|+.++ .++|++||+++|+|+|++++|+||++ +++.++++++|+.|+.+..+
T Consensus 141 ~~~~~~~~~~~~~--g~~~~l~~~t--------~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 210 (431)
T 3cx5_A 141 TAFQNTPLSLPTR--GTLESLENLV--------VADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKP 210 (431)
T ss_dssp HHTTTSGGGSCTT--CCHHHHHTCC--------HHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCC
T ss_pred HhcCCCCCCCCCC--CCHHHHhhCC--------HHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 5555655543332 3455677765 79999999999999999999999999 99999999988888765432
Q ss_pred CCCCcccccccCccceeEEEe-cccccEEEEEecCCCCCCCchhHHHHHHHhhcC------------ccchhhHhccCCc
Q psy14715 945 QPGQTVHSFNVSGIQKVSHVL-PFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTT------------KYLLREVREKNGA 1011 (1147)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~------------srL~~~lRek~ga 1011 (1147)
.+ . .+. .... ....+.. +.+++++.++|+++++++++++++.|++.+||+ ||||++|||++++
T Consensus 211 ~~-~-~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~ 286 (431)
T 3cx5_A 211 VL-K-KKA-AFLG-SEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLC 286 (431)
T ss_dssp CC-C-CCC-CCCC-EEEEEECTTSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCC
T ss_pred CC-C-CCC-cccC-ceEEEcCCCCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCce
Confidence 11 1 111 1111 1122222 356788999999988899999999999999984 8999999987559
Q ss_pred cccccccCC---CceEEEEEeeCC--CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc---CCCChhhHH---H
Q psy14715 1012 YGAGAVVSP---SGVIQFYSYRDP--YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD---APIPPGSKG---M 1080 (1147)
Q Consensus 1012 Y~v~~~~~~---~g~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~---~~~~~~~~~---~ 1080 (1147)
|++++.+.. .|.+.+++.++| +..++++.+.++++++.+ +++++||+++|..+++++. ...+....+ .
T Consensus 287 y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 365 (431)
T 3cx5_A 287 DNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLG 365 (431)
T ss_dssp SEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred eeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 999987653 788888887776 789999999999999998 8999999999999998763 344444333 3
Q ss_pred HHH-HcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1081 SKF-LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1081 ~~~-~~g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
..+ ..|...+ .+++.+.|++||++||+++|++|+.+++. .++++||...
T Consensus 366 ~~~~~~g~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~----~~~v~g~~~~ 415 (431)
T 3cx5_A 366 AEVLIKGSKLS-LGEAFKKIDAITVKDVKAWAGKRLWDQDI----AIAGTGQIEG 415 (431)
T ss_dssp HHHHHHSSCCC-HHHHHHHHHHCCHHHHHHHHHHHTTTCCC----EEEEEESCTT
T ss_pred HHHHhcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHcccCCc----EEEEEcchhc
Confidence 333 3676544 57889999999999999999999987665 8999999764
No 28
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=5.1e-35 Score=349.08 Aligned_cols=383 Identities=12% Similarity=0.057 Sum_probs=279.6
Q ss_pred eeeeecCccEEEEecCC--CCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCHHHHHHHHH----hhccceE
Q psy14715 713 TDKHILQVPIQLSTQPT--NGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDFREMDQLIH----MSTGGIS 784 (1147)
Q Consensus 713 ~~~~~NG~~v~~~~~~~--~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie----~~g~~l~ 784 (1147)
..++.||++|++.+.+. .+++++.++++.|+..+ +..|++|+++||++ +||++++..++.+.++ ..|+.+|
T Consensus 28 ~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf-~GT~~~~~~~~~~~~~~~~~~~G~~~n 106 (492)
T 3go9_A 28 QGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLAL-MSSASFTPAQLQSLWQQGIDNERPLPP 106 (492)
T ss_dssp EEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHH-HCCTTCCHHHHHHHHHTCSCSSSCCCS
T ss_pred EEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence 35778999999987653 56899999999999654 45688899999999 8999999999997655 5789999
Q ss_pred EEeeeccCCCCCCcceeEEEEEEEecc---ccHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHhhcccCcC-cHHHHH
Q psy14715 785 FNSHLGESCSTPNGFEEAILVSSHCLE---HNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGN-GHRYAM 860 (1147)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~i~~~~l~---~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~ 860 (1147)
++++ .+.+.|++++++ ++++.+|++|.+++.+|.| +.+.+...+....+.+.....++ ...+..
T Consensus 107 a~t~-----------~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f-~~~~~~~er~~~~~~~~~~~~~~~~~~~~~ 174 (492)
T 3go9_A 107 AITS-----------YDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAV-SEQTVNAALNTATDPIATFPQNIQEPWWRY 174 (492)
T ss_dssp EEEC-----------SSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCC-SHHHHHHHHTCSSCCEEESSSCTTCHHHHH
T ss_pred eEeC-----------CCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 9997 678999999999 6899999999999999999 45544443332222222211111 112211
Q ss_pred HHHhccCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCC
Q psy14715 861 SIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIP 939 (1147)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~ 939 (1147)
. ++...++.+...+ ..++.++ .++|++||+++|+|+||+++|+||++ +++.++++++|+.|+
T Consensus 175 ~-----~~~~~~~~~~~~~----~~i~~it--------~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~ 237 (492)
T 3go9_A 175 R-----LKGSSLIGHDPGQ----PVTQPVD--------VEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELK 237 (492)
T ss_dssp H-----TTTSTTTTCCTTC----CCCSSCC--------HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCC
T ss_pred H-----hccCCcccCCCch----hhhhcCC--------HHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCC
Confidence 1 1222222222221 1233444 79999999999999999999999999 999999999999998
Q ss_pred CCCCC-CCCCcccccccCccceeEEEecccccEEEEEecCCCCCCCchhHH------HHHHHhhcCccchhhHhc--cCC
Q psy14715 940 GDFTS-QPGQTVHSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVAL------KVLSKFLTTKYLLREVRE--KNG 1010 (1147)
Q Consensus 940 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al------~vl~~iLg~srL~~~lRe--k~g 1010 (1147)
.+... .+.+..+.. ... ....+..+.+++++.++|+++...++|+.++ .|++.+|| ++|+.+||+ ++|
T Consensus 238 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg-~~L~~~lre~~~~g 314 (492)
T 3go9_A 238 GKRTAPAAVATLAPL-PPE-PVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF-WHIKQVLEKNNQKN 314 (492)
T ss_dssp CCCSSCCCCCCCCCC-CSS-CEEEEESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCTT
T ss_pred CCCCCCCCCCCCCCC-CCC-ceEEEcCCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Confidence 75432 111111111 111 2344556678899999999988888887765 79999999 799999999 888
Q ss_pred -ccccccccCC---CceEEEEEeeCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhccCC---------CChhh
Q psy14715 1011 -AYGAGAVVSP---SGVIQFYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAP---------IPPGS 1077 (1147)
Q Consensus 1011 -aY~v~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~~~---------~~~~~ 1077 (1147)
+|++++++.. .|.+.+.+ .+.+.+++++.+.++++++++.++|++||+++|+.+++++... ...++
T Consensus 315 l~y~~~s~~~~~~~~~~~~i~~-~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~ 393 (492)
T 3go9_A 315 LKLGFDCRVQYQRAQCAIHLNT-PVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMS 393 (492)
T ss_dssp CEEEEEEEEETTEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHH
T ss_pred cccccCchhhhhhcceEEEEEc-CcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999998765 34443333 4557899999999999999988999999999999999996332 12233
Q ss_pred HHHHHHHcC----CCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1078 KGMSKFLYG----KTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1078 ~~~~~~~~g----~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
.....+..+ .+.++.+.+.+.|.+||++||+++|++|+.++ . .++|||++..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~-~----~~vvvg~~~~ 449 (492)
T 3go9_A 394 QRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQD-T----TLVLMQPKGE 449 (492)
T ss_dssp HHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC-C----EEEEEEETTS
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCC-C----eEEEEcCCCC
Confidence 333333332 34455555667799999999999999999864 3 6888888664
No 29
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.98 E-value=1.9e-31 Score=346.58 Aligned_cols=389 Identities=12% Similarity=0.077 Sum_probs=295.4
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCCCC--CccccchhHHHHHhhcCCCCCCH-HHHHHHHHhhccceEEEeeec
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSP--ELKPLVPLFNYVINQMRTKNYDF-REMDQLIHMSTGGISFNSHLG 790 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~--~~~~~~~l~~~ll~~~Gt~~~s~-~el~~~ie~~g~~l~~~~~~~ 790 (1147)
.++.||++|++.+++..+.+.+.+++++|+..+ +..|++|+++||+| +||++++. .++.+.++.+||.+|++|+
T Consensus 24 ~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf-~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~-- 100 (939)
T 1q2l_A 24 IRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSL-MGSKKYPQADSLAEYLKMHGGSHNASTA-- 100 (939)
T ss_dssp EEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTT-SCBSSSCSTTHHHHHHHTTTCEEEEEEC--
T ss_pred EEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHc-cCCCCCCCcchHHHHHHHcCCcceEEEC--
Confidence 468899999999999888899999999999644 45688899999999 99999984 6999999999999999997
Q ss_pred cCCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCC
Q psy14715 791 ESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQL--TDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVD 868 (1147)
Q Consensus 791 ~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 868 (1147)
.+.+.|++++++++++.+|+++++++.+|.| ++.++++.++.++++...+ .+...........++
T Consensus 101 ---------~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~----~~~~~~~~~~~~~~~ 167 (939)
T 1q2l_A 101 ---------PYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMART----RDGMRMAQVSAETIN 167 (939)
T ss_dssp ---------SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHSSC
T ss_pred ---------CCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccC----CHHHHHHHHHHHhcC
Confidence 7789999999999999999999999999999 3456777777666554322 233344555566667
Q ss_pred chhhhhhHhcchhHHHHHHH----HhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCC
Q psy14715 869 PVSEQKEIYSGLSFVSKIKE----IAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFT 943 (1147)
Q Consensus 869 ~~~~~~~~~~g~~~~~~l~~----l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~ 943 (1147)
+++++.....| ..++|.+ ++ .++|++||+++|+|+||+++|+||++ +++.++++++|+.|+.+..
T Consensus 168 ~~~p~~~~~~G--~~~~l~~~~~~~~--------~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~ 237 (939)
T 1q2l_A 168 PAHPGSKFSGG--NLETLSDKPGNPV--------QQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKES 237 (939)
T ss_dssp TTSGGGSCCSC--CHHHHSCBTTBCH--------HHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCC
T ss_pred CCCCCccCCCC--CHHHHhcCCCchH--------HHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCC
Confidence 77777654444 4456666 54 79999999999999999999999999 9999999999999987543
Q ss_pred CCCCCcccccccCccceeEEEec-ccccEEEEEecCCCCCCC-chhHHHHHHHhhcC---ccchhhHhccCCcccccccc
Q psy14715 944 SQPGQTVHSFNVSGIQKVSHVLP-FPVNFTAKSLRGVPFLHK-DYVALKVLSKFLTT---KYLLREVREKNGAYGAGAVV 1018 (1147)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-d~~al~vl~~iLg~---srL~~~lRek~gaY~v~~~~ 1018 (1147)
+.+....+.+.+..........+ .++..+.++|+.+...+. +..++.+++.+||+ |+|+++||+++.+|++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~ 317 (939)
T 1q2l_A 238 KKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANS 317 (939)
T ss_dssp CCCCCCSCSCCGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCCCCCCCHHHcCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeecc
Confidence 32211112222211012222223 456788899988776544 66789999999984 79999999753399998874
Q ss_pred --CC---CceEEEEEeeCC----CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhccCC--CC---hhhHHHHHHH
Q psy14715 1019 --SP---SGVIQFYSYRDP----YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAP--IP---PGSKGMSKFL 1084 (1147)
Q Consensus 1019 --~~---~g~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~~~--~~---~~~~~~~~~~ 1084 (1147)
.. .|.|.+++...+ +.+++++.+.++++.++..+++++||+++|..+..++... .+ ....+...+
T Consensus 318 ~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~- 396 (939)
T 1q2l_A 318 DPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTM- 396 (939)
T ss_dssp ESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHH-
T ss_pred ccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHh-
Confidence 22 577777765443 6788999999999999988999999999999998886221 22 223333333
Q ss_pred cCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1085 YGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1085 ~g~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
.+.+.++.......+.++|+++|++++++ +.+++. +++++||...
T Consensus 397 ~~~~~~~~~~~~~~i~~vt~~~i~~~~~~-l~~~~~----~~~~~~p~~~ 441 (939)
T 1q2l_A 397 IRVPVEHTLDAVNIADRYDAKAVKERLAM-MTPQNA----RIWYISPKEP 441 (939)
T ss_dssp TTSCGGGTTTTTTCCCCCCHHHHHHHHHH-CSGGGC----EEEEECTTCC
T ss_pred hcCCHHHHhcCchhhhccCHHHHHHHHHh-cCHHHc----EEEEEcCCCC
Confidence 35555555555677999999999999987 666665 7899998654
No 30
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.97 E-value=8.2e-32 Score=309.01 Aligned_cols=307 Identities=11% Similarity=0.069 Sum_probs=236.1
Q ss_pred ceEEEeecCCC----CceEEEEecCCCCCCCCchHHHHHHHhcCCCCCCCCChHHHHHhhhcCCCCccccCCCcceeecc
Q psy14715 175 AEYFHLSRDDS----NNVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFS 250 (1147)
Q Consensus 175 ~~v~~~~~~~~----~~~~~~G~~~e~~~~~G~ah~leh~~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~ 250 (1147)
+||+..+.+.+ .++|++|++.| +..|+||++|||+|+||++|+..+ +.+.+++ .|+.+||+|+.|+|.|++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~-l~~~l~~-~G~~~na~t~~~~t~~~~- 75 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALK-LVRESEL-LGGTFKSTLDREYITLKA- 75 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHH-HHHHHHH-HTCEEEEEECSSCEEEEE-
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHH-HHHHHHH-hCCeEEEEEccceEEEEE-
Confidence 46776655544 24577899886 478999999999999999999766 8888865 566899999999999954
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCccccc-ccceeeeccCccCCCCCceeeeEEEecccccCCChhHHHHHHHHHhcCCC
Q psy14715 251 SQNHCDYFNLMSIYLDAVFNPQLKQLDFM-QEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGEALMNNILPT 329 (1147)
Q Consensus 251 ~~~~~~~~~~l~~~~d~~~~p~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~l~~~ 329 (1147)
++..++++.+|+++.|++.+|.|++++|+ +| |+++.+|++...++|..++.+.+.+.+|+
T Consensus 76 ~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~------------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~- 136 (352)
T 3cx5_B 76 TFLKDDLPYYVNALADVLYKTAFKPHELTESV------------------LPAARYDYAVAEQCPVKSAEDQLYAITFR- 136 (352)
T ss_dssp EEEGGGHHHHHHHHHHHHHHBCCCHHHHHHTH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred EechhhHHHHHHHHHHHHhCCCCCHHHHHHHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 55678899999999999999999999998 99 99999999988899999999999999997
Q ss_pred CCCCCCCCCCcccccCCChHHHHHHHhhcccCCceEEEEEcCCCHHHHHHHH-hHhhhccCCCCCCCCCCCcCCCCCCCC
Q psy14715 330 YCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFI-NTNYLSKINPYQHHRSSTAVLPEPAWD 408 (1147)
Q Consensus 330 ~~y~~~~~G~~~~i~~~~~~~l~~f~~~~y~p~n~~lvi~Gd~~~~~~~~~i-~~~~f~~~~~~~~~~~~~~~~~~~~~~ 408 (1147)
|||+++.. .++|++++.++|++||++||+|+||+++++| +|++++++++ ++ +|++||.....+. ....+++
T Consensus 137 ~p~~~~~~--~~~l~~it~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~-~f~~~~~~~~~~~---~~~~~~~- 208 (352)
T 3cx5_B 137 KGLGNPLL--YDGVERVSLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDES-LLSTLPAGKSLVS---KSEPKFF- 208 (352)
T ss_dssp TTTTSCSS--CCSSSCCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHS-TTTTSCCCCCCCC---CSCCCCC-
T ss_pred CCCCCccc--hhhhccCCHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHH-hhccCCCCCCCCC---CCCCCCc-
Confidence 99998774 7899999999999999999999999999999 9999999999 75 9999986532111 1111122
Q ss_pred CCceEEEeccCCCCCCCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCCCChHhhHHHHhc-CCCCCccccccccCCCc
Q psy14715 409 KPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVES-GLGLSFSPVTGYEASIH 487 (1147)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~~~s~L~~~lre~-~~~~~~s~~~~~~~~~~ 487 (1147)
.+....+. . ..++.+.+++.. .+ ++.+++.+++.+|++ .||++ |++ +++++.....
T Consensus 209 ~~~~~~~~------~-~~~~~~~~~~~~---~~-~~~~~l~vl~~iLg~--------~lre~~gl~----~~~~~~~~~~ 265 (352)
T 3cx5_B 209 LGEENRVR------F-IGDSVAAIGIPV---NK-ASLAQYEVLANYLTS--------ALSELSGLI----SSAKLDKFTD 265 (352)
T ss_dssp CSCEEEEE------C-SSSEEEEEEEEE---CT-TTHHHHHHHHHHHHS--------TTSTTGGGC----SEEEEEEETT
T ss_pred cCCeEEEe------c-CCCceEEEecCC---CC-hhHHHHHHHHHHhCc--------chhcccCce----EEEeecCcCc
Confidence 22222232 1 245555555433 33 678999999999975 45654 443 3334443445
Q ss_pred ceEEEEEEeCCCCCcHHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy14715 488 DTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERVASVL 567 (1147)
Q Consensus 488 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~~ 567 (1147)
.+.|.+++. ++ +.+++.+ .+.+++ +.|++++||+++|
T Consensus 266 ~g~~~i~~~-~~--~~~~~~~------------------------------------~i~~~l----~~~~t~~el~~ak 302 (352)
T 3cx5_B 266 GGLFTLFVR-DQ--DSAVVSS------------------------------------NIKKIV----ADLKKGKDLSPAI 302 (352)
T ss_dssp EEEEEEEEE-ES--CHHHHHH------------------------------------HHHHHH----HHHHSCEECGGGH
T ss_pred ceeEEEEEE-eC--CHHHHHH------------------------------------HHHHHH----HhcCCHHHHHHHH
Confidence 688888874 44 5555555 555444 3469999999999
Q ss_pred HHHHhhhhcccC
Q psy14715 568 HSLELSLKHQSS 579 (1147)
Q Consensus 568 ~~~~~~~~~~~~ 579 (1147)
+.++.++....+
T Consensus 303 ~~~~~~~~~~~~ 314 (352)
T 3cx5_B 303 NYTKLKNAVQNE 314 (352)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhhhh
Confidence 999998775544
No 31
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=1.3e-29 Score=331.10 Aligned_cols=396 Identities=11% Similarity=0.066 Sum_probs=294.9
Q ss_pred eeeecCccEEEEecCCCCeEEEEEEEeCCCC--CCCccccchhHHHHHhhcCCCCCCH-HHHHHHHHhhccceEEEeeec
Q psy14715 714 DKHILQVPIQLSTQPTNGVTYFRSVVDTSKL--SPELKPLVPLFNYVINQMRTKNYDF-REMDQLIHMSTGGISFNSHLG 790 (1147)
Q Consensus 714 ~~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~--~~~~~~~~~l~~~ll~~~Gt~~~s~-~el~~~ie~~g~~l~~~~~~~ 790 (1147)
.++.||++|++.+++..+.+++.++|++|+. +++..|++|+++||+| +||++++. .++.+.++.+||.+|++|+
T Consensus 38 ~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf-~GT~~~p~~~~~~~~l~~~Gg~~NA~T~-- 114 (990)
T 3cww_A 38 LELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLF-LGTKKYPKENEYSQFLSEHAGSSNAFTS-- 114 (990)
T ss_dssp EEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGG-GCBSSSCSTTHHHHHHHTTTCEEEEEEC--
T ss_pred EEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHh-cCCCCCCCcchHHHHHHHcCCceeEEEC--
Confidence 4678999999999999999999999999996 4456788899999999 99999987 7999999999999999997
Q ss_pred cCCCCCCcceeEEEEEEEeccccHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCC
Q psy14715 791 ESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTD--LNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVD 868 (1147)
Q Consensus 791 ~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 868 (1147)
.+.+.|.+.+++++++.+|+++++++.+|.|++ .++++.++.++.+.. ..++.. .........++
T Consensus 115 ---------~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~---~~~~~~-~~~~~~~~~~~ 181 (990)
T 3cww_A 115 ---------GEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---VMNDAW-RLFQLEKATGN 181 (990)
T ss_dssp ---------SSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHH---HTCHHH-HHHHHHHHTSC
T ss_pred ---------CCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhc---cCChHH-HHHHHHHHhcC
Confidence 677899999999999999999999999999932 356666665554432 222333 34555666777
Q ss_pred chhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHHHHHhhcCCCCCCCCCC
Q psy14715 869 PVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERLESFLQSIPGDFTSQPG 947 (1147)
Q Consensus 869 ~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v~~~~~~l~~~~~~~~~ 947 (1147)
+++++.....| ..++|+++.. ....++.++|++||+++|+|+||+++|+||++ +++.++++++|+.|+.+..+.+.
T Consensus 182 ~~~py~~~~~G--~~~~l~~~~~-~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~ 258 (990)
T 3cww_A 182 PKHPFSKFGTG--NKYTLETRPN-QEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPE 258 (990)
T ss_dssp TTSGGGCCCSC--CHHHHTHHHH-HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred CCCCcccCCCC--CHHHHhhccc-cccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCC
Confidence 77777654333 4567776600 00000279999999999999999999999999 99999999999999875433221
Q ss_pred CcccccccCccceeEEEecc-cccEEEEEecCCCCC-CCchhHHHHHHHhhcC---ccchhhHhccCCccccccccCC--
Q psy14715 948 QTVHSFNVSGIQKVSHVLPF-PVNFTAKSLRGVPFL-HKDYVALKVLSKFLTT---KYLLREVREKNGAYGAGAVVSP-- 1020 (1147)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~d~~al~vl~~iLg~---srL~~~lRek~gaY~v~~~~~~-- 1020 (1147)
...+++.........+..+. ++.++.++|+.+... +.+..++.+++.+||+ +.|+.+||+++.+|++++++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~ 338 (990)
T 3cww_A 259 FPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGA 338 (990)
T ss_dssp CCSCSSCGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEE
T ss_pred CCCCCCChHHcCeEEEEEECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCC
Confidence 11111211110123333343 578889999887765 4578899999999974 5688899986559999987653
Q ss_pred --CceEEEEEeeC-C---CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc--CCCChhhHH--HHHHHcCCCHH
Q psy14715 1021 --SGVIQFYSYRD-P---YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD--APIPPGSKG--MSKFLYGKTDE 1090 (1147)
Q Consensus 1021 --~g~~~~~~~~~-~---~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~--~~~~~~~~~--~~~~~~g~~~~ 1090 (1147)
.|.|.+++... + +.+++++.+.++++.+++.+++++++++++......+. ...+..+.+ ...++.+.+++
T Consensus 339 ~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 418 (990)
T 3cww_A 339 RGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLE 418 (990)
T ss_dssp TTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGG
T ss_pred CCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHH
Confidence 36666666532 2 77889999999999999889999999999877666542 223333322 12334566776
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccccccCCCeEEEEcCCC
Q psy14715 1091 MIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1091 ~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~vvG~~~ 1133 (1147)
+...+.+.|.++|+++|+++++. +.+++. +++++||..
T Consensus 419 ~~~~~~~~i~~~t~~~i~~~~~~-l~~~~~----~~~~~~p~~ 456 (990)
T 3cww_A 419 EVLTAEYLLEEFRPDLIEMVLDK-LRPENV----RVAIVSKSF 456 (990)
T ss_dssp GTTTTTTCCCCCCHHHHHHHHTT-CSGGGC----EEEEECGGG
T ss_pred HHhccchhhhcCCHHHHHHHHHh-cCHhHE----EEEEEcCCC
Confidence 66666688999999999999986 555555 788899854
No 32
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.96 E-value=1.1e-28 Score=315.27 Aligned_cols=388 Identities=7% Similarity=0.014 Sum_probs=275.9
Q ss_pred eeecCccEEEEecCCCCeEEEEEEEeCCCCCCCccccchhHHHHHhhcCCCCCCHHHHHHHHHh--hccceEEEeeeccC
Q psy14715 715 KHILQVPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHM--STGGISFNSHLGES 792 (1147)
Q Consensus 715 ~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~--~g~~l~~~~~~~~~ 792 (1147)
.+.||++|++.+.+..+.+...+.+..+..+++..|.+|+++||++ +||++++..++...++. +|+.+|++|+
T Consensus 91 ~l~nGl~vl~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf-~GS~k~p~~e~~~~l~~~slG~~lNA~T~---- 165 (1193)
T 3s5m_A 91 HKKAKTQVISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVL-SGSKNYNYKNSIGLLEKGTLHTHLNAYTF---- 165 (1193)
T ss_dssp ETTTCCEEEEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTT-SCBTTBCCTTHHHHHHHSCCEEEEEEEEC----
T ss_pred ECCCCCEEEEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHh-CCCCCCChhhHHHHHHHhccCceEEeEEc----
Confidence 5689999999998765422222223333456677889999999999 99999999999988888 8999999997
Q ss_pred CCCCCcceeEEEEEEEecc-ccHHHHHHHHHHHHhcCCCCChh----HH-----------------------------HH
Q psy14715 793 CSTPNGFEEAILVSSHCLE-HNNDKMFDVLSELFNNVQLTDLN----RF-----------------------------TT 838 (1147)
Q Consensus 793 ~~~~~~~~~~~~i~~~~l~-~~l~~~l~ll~~~l~~p~f~~~~----~~-----------------------------~~ 838 (1147)
.+.+.|.+.+++ ++++.+++++.|++.+|.|.+.+ .. +.
T Consensus 166 -------~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~ 238 (1193)
T 3s5m_A 166 -------NDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNG 238 (1193)
T ss_dssp -------SSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEEC
T ss_pred -------CCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHH
Confidence 788999999888 99999999999999999972211 11 23
Q ss_pred HHHHHHHHhhcccCcCcHHHHHHHHhccCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEE
Q psy14715 839 LVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCA 918 (1147)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~ 918 (1147)
++.++++... +.+..++...+...++++++++....| ..+.|.+++ .++|++||+++|+|+|++++
T Consensus 239 vV~~E~k~~~----~~p~~~~~~~l~~~lf~~hpY~~~~~G--~~e~I~~lt--------~edl~~F~~~~Y~P~Na~l~ 304 (1193)
T 3s5m_A 239 IVYNEMKGAL----SSPLEDLYHEEMKYMFPDNVHSNNSGG--DPKEITNLT--------YEEFKEFYYKNYNPKKVKVF 304 (1193)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHCTTSGGGSCTTC--CHHHHTTCC--------HHHHHHHHHHHSCTTTCEEE
T ss_pred HHHHHHHHhh----CCHHHHHHHHHHHHhCCCCCCCCCCCC--CHHHHhhCC--------HHHHHHHHHHhcCccceEEE
Confidence 4444444332 234445555555666777777765555 445677776 79999999999999999999
Q ss_pred EEeCCC-CChHHHHHHHhhcCCCCCCCC----CCCcccccccCccceeEEE----ecccccEEEEEecCCCC-----C--
Q psy14715 919 LNMSAQ-SNAPERLESFLQSIPGDFTSQ----PGQTVHSFNVSGIQKVSHV----LPFPVNFTAKSLRGVPF-----L-- 982 (1147)
Q Consensus 919 v~Gd~~-~~~~~~v~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~-----~-- 982 (1147)
|+||++ +++.++++++|+.|+.++... +.+..+.. ... +..... .+.++.++.++|+.++. +
T Consensus 305 v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~ 382 (1193)
T 3s5m_A 305 FFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYK-KGP-FYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHN 382 (1193)
T ss_dssp EEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCCCCCCBCC-CCC-EEEEEEEECCCSSCCEEEEEEEESSCBCC------
T ss_pred EEecCCHHHHHHHHHHHhccCCCCCCCcccccccCCCCCC-CCC-eEEEEecCCCCCccccEEEEEEEecCccccccccc
Confidence 999999 999999999999998643311 11111111 111 222221 12457888899988642 2
Q ss_pred ---------------------------CCchhHHHHHHHhhc---CccchhhHhccCCccccc-cccCC---CceEEEEE
Q psy14715 983 ---------------------------HKDYVALKVLSKFLT---TKYLLREVREKNGAYGAG-AVVSP---SGVIQFYS 1028 (1147)
Q Consensus 983 ---------------------------~~d~~al~vl~~iLg---~srL~~~lRek~gaY~v~-~~~~~---~g~~~~~~ 1028 (1147)
+++++++.||+.+|| +||||++|||++.+|+++ +++.. .+.|.++.
T Consensus 383 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~ 462 (1193)
T 3s5m_A 383 NNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGL 462 (1193)
T ss_dssp ----------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEE
T ss_pred ccccccccccccccccccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeecccccccccCCcEEEEEE
Confidence 478999999999997 489999999963399997 56654 55666665
Q ss_pred -eeCC-C--------H-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc-c----CCCCh--hhHHHHHHHcCCCHH
Q psy14715 1029 -YRDP-Y--------A-LETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV-D----APIPP--GSKGMSKFLYGKTDE 1090 (1147)
Q Consensus 1029 -~~~~-~--------~-~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l-~----~~~~~--~~~~~~~~~~g~~~~ 1090 (1147)
..++ + . +++.+++.++++++.+.+++++||+++|+++..++ + ++.++ ...++..|+++.++.
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~ 542 (1193)
T 3s5m_A 463 KGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPL 542 (1193)
T ss_dssp EEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTT
T ss_pred ecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHH
Confidence 2443 2 4 68899999999999999999999999999997775 2 22211 122345577776665
Q ss_pred H---HHHHHHHHhcCC---HHHHHHHHHHhhccccccCCCeEEEEcCCC
Q psy14715 1091 M---IEQYRLSVKQVT---EDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1091 ~---~~~~~~~i~~vT---~edi~~~a~k~l~~~~~~~~~~~~vvG~~~ 1133 (1147)
. .+..++.+.+.+ ++++++++++||..++. .+++++-|..
T Consensus 543 ~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~n~~---~~~~~~~P~~ 588 (1193)
T 3s5m_A 543 LIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAH---RSVILLEGDE 588 (1193)
T ss_dssp TTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTTCCC---EEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHHHhccCCc---eEEEEEEcCC
Confidence 5 344445555443 45999999999965544 2566666643
No 33
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=2.9e-28 Score=317.94 Aligned_cols=387 Identities=9% Similarity=0.018 Sum_probs=276.2
Q ss_pred eeecCccEEEEecCCCCeEEEEEEEeCCCCCCCccccchhHHHHHhhcCCCCCCHHH-HHHHHH-hhccceEEEeeeccC
Q psy14715 715 KHILQVPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFRE-MDQLIH-MSTGGISFNSHLGES 792 (1147)
Q Consensus 715 ~~~NG~~v~~~~~~~~~~v~~~l~~~~g~~~~~~~~~~~l~~~ll~~~Gt~~~s~~e-l~~~ie-~~g~~l~~~~~~~~~ 792 (1147)
++.||++|++.+++..+.+ +.+.+.. .+++..|.+|+++||+| +||++++..+ +.+.++ ..|+.+|++|+
T Consensus 42 ~l~nGl~v~~~~~~~~~~~-~~vg~~~--e~~~~~GlAH~lEHm~f-~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~---- 113 (995)
T 2fge_A 42 HKKTGCEVMSVSNEDENKV-FGVVFRT--PPKDSTGIPHILQHSVL-CGSRKYPVKEPFVELLKGSLHTFLNAFTY---- 113 (995)
T ss_dssp ETTTCCEEEEEECSCSSEE-EEEEEEC--CCSSSSCHHHHHHHHTT-SCBTTBCSSCHHHHHHHHCCEEEECCEEC----
T ss_pred ECCCCCEEEEEEcCCCccE-EEEEeCC--CCcCCCChHHHHHHHHh-CCCCCCCCccHHHHHHHhccCCCceeeEC----
Confidence 5689999999999876653 5544443 35566788899999999 8999999877 455554 46888999997
Q ss_pred CCCCCcceeEEEEEEEec-cccHHHHHHHHHHHHhcCCC--CChhHHH-----------------HHHHHHHHHhhcccC
Q psy14715 793 CSTPNGFEEAILVSSHCL-EHNNDKMFDVLSELFNNVQL--TDLNRFT-----------------TLVNTLSSELINGIS 852 (1147)
Q Consensus 793 ~~~~~~~~~~~~i~~~~l-~~~l~~~l~ll~~~l~~p~f--~~~~~~~-----------------~~~~~~~~~~~~~~~ 852 (1147)
.+.+.|.+.+. .++++.+++++.|++.+|.| ++.+..+ .++.++++...+
T Consensus 114 -------~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~--- 183 (995)
T 2fge_A 114 -------PDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYS--- 183 (995)
T ss_dssp -------SSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTT---
T ss_pred -------CCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhC---
Confidence 77788888775 56999999999999999999 6433333 356555554322
Q ss_pred cCcHHHHHHHHhccCCchhhhhhHhcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHH
Q psy14715 853 GNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERL 931 (1147)
Q Consensus 853 ~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v 931 (1147)
.+.......+...++++++++....| ..+.|.+++ .++|++||++||+|+||+++|+||++ +++.+++
T Consensus 184 -~p~~~~~~~~~~~~~~~~py~~~~~G--~~~~i~~~t--------~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i 252 (995)
T 2fge_A 184 -QPDNILGRIAQQALSPENTYGVDSGG--DPKDIPNLT--------FEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVL 252 (995)
T ss_dssp -SHHHHHHHHHHHHHCTTSGGGSCTTC--CTTTGGGCC--------HHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCCCCCCCCCC--ChHhhhhcC--------HHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHH
Confidence 33445555556666677777655444 334566665 79999999999999999999999999 9999999
Q ss_pred HHHhhcCC--CCCCCCCCCcccccccCccceeEEEe-----cccccEEEEEecCCCCC--CCchhHHHHHHHhhc---Cc
Q psy14715 932 ESFLQSIP--GDFTSQPGQTVHSFNVSGIQKVSHVL-----PFPVNFTAKSLRGVPFL--HKDYVALKVLSKFLT---TK 999 (1147)
Q Consensus 932 ~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~--~~d~~al~vl~~iLg---~s 999 (1147)
+++|+.|+ ....+.+.+..+.+.........+.. ..+++++.++|+.+... +++++++.+++.+|| +|
T Consensus 253 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S 332 (995)
T 2fge_A 253 SEYLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPAS 332 (995)
T ss_dssp HHHHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTS
T ss_pred HHHHhhCCccccCCCcccCCCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCC
Confidence 99999998 42211111111122211101112221 13578899999987766 588999999999997 38
Q ss_pred cchhhHhccCCccccccc-cCC---CceEEEEE-eeC-CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhcc-CC
Q psy14715 1000 YLLREVREKNGAYGAGAV-VSP---SGVIQFYS-YRD-PYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVD-AP 1072 (1147)
Q Consensus 1000 rL~~~lRek~gaY~v~~~-~~~---~g~~~~~~-~~~-~~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~-~~ 1072 (1147)
+|+++||+++.+|+++++ +.. .|.|.+.. ..+ .+.+++++.+.++++++++.+++++||+++|+.+..++. ..
T Consensus 333 ~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~ 412 (995)
T 2fge_A 333 PLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENN 412 (995)
T ss_dssp HHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999997339999876 543 67777653 334 367899999999999999889999999999999988762 11
Q ss_pred --CChh-----hHHHHHHHcCCCHHHHHHHHHHHhcCCH----H----HHHHHHHHhhccccccCCCeEEEEcCCC
Q psy14715 1073 --IPPG-----SKGMSKFLYGKTDEMIEQYRLSVKQVTE----D----DIRRVADTYLSRDATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1073 --~~~~-----~~~~~~~~~g~~~~~~~~~~~~i~~vT~----e----di~~~a~k~l~~~~~~~~~~~~vvG~~~ 1133 (1147)
.... ...+..++++.++....++.+.++++++ + +|++++++||.+++. .++++++|..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~---~~~~~~~p~~ 485 (995)
T 2fge_A 413 TGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSH---RVTIEMQPDP 485 (995)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCC---EEEEEEEEET
T ss_pred CCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCc---eEEEEEEcCc
Confidence 1122 2334456666555554445566666666 8 899999999975432 2677778754
No 34
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.94 E-value=1.6e-27 Score=273.23 Aligned_cols=335 Identities=13% Similarity=0.132 Sum_probs=237.4
Q ss_pred ccEEEEecCCCCeEEEEEEEeCCCCCCCccccchhHHHHHhhcCCCCCCHHHHHHHHHhhccceEEEeeeccCCCCCCcc
Q psy14715 720 VPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLGESCSTPNGF 799 (1147)
Q Consensus 720 ~~v~~~~~~~~~~v~~~l~~~~g~~~~~~~~~~~l~~~ll~~~Gt~~~s~~el~~~ie~~g~~l~~~~~~~~~~~~~~~~ 799 (1147)
++|+..+.+ .+++++.+++++|+..++..|.+|+++||++ +||++++..++.+.++..|++++++++
T Consensus 1 l~v~~~~~~-~~~v~~~~~~~~Gs~~e~~~G~ah~leh~lf-~Gt~~~~~~~l~~~l~~~G~~~na~t~----------- 67 (352)
T 3cx5_B 1 LTVSARDAP-TKISTLAVKVHGGSRYATKDGVAHLLNRFNF-QNTNTRSALKLVRESELLGGTFKSTLD----------- 67 (352)
T ss_dssp CEEEEECCS-CSEEEEEEEESCSGGGCSSTTHHHHHHHHTT-SCBSSSCHHHHHHHHHHHTCEEEEEEC-----------
T ss_pred CEEEEeeCC-CceEEEEEEEeeeccCCCcccHHHHHHHHhc-cCcCCCCHHHHHHHHHHhCCeEEEEEc-----------
Confidence 467776544 5699999999999977766788899999999 899999999999999999999999997
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHHHhcCCCCC--hh-HHHHHHHHHHHHhhcccCcCcHHHHHHHHhccCCchhhhhhH
Q psy14715 800 EEAILVSSHCLEHNNDKMFDVLSELFNNVQLTD--LN-RFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKEI 876 (1147)
Q Consensus 800 ~~~~~i~~~~l~~~l~~~l~ll~~~l~~p~f~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 876 (1147)
.+++.|++++++++++.+|+++.+++.+|.|++ .+ +++.++.++++...+ .+...+...+...+++ +++...
T Consensus 68 ~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~----~p~~~~~~~~~~~~~~-~p~~~~ 142 (352)
T 3cx5_B 68 REYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQ----CPVKSAEDQLYAITFR-KGLGNP 142 (352)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHT-TTTTSC
T ss_pred cceEEEEEEechhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhC-CCCCCc
Confidence 778999999999999999999999999999942 22 455555555554333 2333444433333333 333322
Q ss_pred hcchhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCC-CChHHHH-HHHhhcCCCCCCCCCCCcccccc
Q psy14715 877 YSGLSFVSKIKEIAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQ-SNAPERL-ESFLQSIPGDFTSQPGQTVHSFN 954 (1147)
Q Consensus 877 ~~g~~~~~~l~~l~~~~~~~~~~~dl~~~~~~~~~~~n~~l~v~Gd~~-~~~~~~v-~~~~~~l~~~~~~~~~~~~~~~~ 954 (1147)
.. .+.|+.++ .++|++||+++|+|+|++++|+| ++ +++.+++ +++|+.|+.+....+....+.+
T Consensus 143 ~~----~~~l~~it--------~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~- 208 (352)
T 3cx5_B 143 LL----YDGVERVS--------LQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVSKSEPKFF- 208 (352)
T ss_dssp SS----CCSSSCCC--------HHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCC-
T ss_pred cc----hhhhccCC--------HHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc-
Confidence 21 12344443 79999999999999999999999 99 9999999 8999999865432211111111
Q ss_pred cCccceeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhcCccchhhHhccCC-ccccccccCC---CceEEEEEee
Q psy14715 955 VSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNG-AYGAGAVVSP---SGVIQFYSYR 1030 (1147)
Q Consensus 955 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~srL~~~lRek~g-aY~v~~~~~~---~g~~~~~~~~ 1030 (1147)
.+ ....+.. ..++.+.++ +++++++++++.|++.+||+ +||++.| + +++.+.. .|.|.+++.+
T Consensus 209 ~~--~~~~~~~-~~~~~~~~~---~~~~~~~~~~l~vl~~iLg~-----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~ 275 (352)
T 3cx5_B 209 LG--EENRVRF-IGDSVAAIG---IPVNKASLAQYEVLANYLTS-----ALSELSGLI--SSAKLDKFTDGGLFTLFVRD 275 (352)
T ss_dssp CS--CEEEEEC-SSSEEEEEE---EEECTTTHHHHHHHHHHHHS-----TTSTTGGGC--SEEEEEEETTEEEEEEEEEE
T ss_pred cC--CeEEEec-CCCceEEEe---cCCCChhHHHHHHHHHHhCc-----chhcccCce--EEEeecCcCcceeEEEEEEe
Confidence 11 1122222 244445454 35567899999999999995 7788888 6 5554432 6777777665
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhccCC-CChhhHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHH
Q psy14715 1031 DPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAP-IPPGSKGMSKFLYGKTDEMIEQYRLSVKQVTEDDIRR 1109 (1147)
Q Consensus 1031 ~~~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vT~edi~~ 1109 (1147)
+ +.+++.+++.++++. ++|++||++||+.+++++... .+ .|...++ .|++||++
T Consensus 276 ~-~~~~~~~~i~~~l~~----~~t~~el~~ak~~~~~~~~~~~~~----------~~~~~~~------~i~~vt~~---- 330 (352)
T 3cx5_B 276 Q-DSAVVSSNIKKIVAD----LKKGKDLSPAINYTKLKNAVQNES----------VSSPIEL------NFDAVKDF---- 330 (352)
T ss_dssp S-CHHHHHHHHHHHHHH----HHSCEECGGGHHHHHHHHHHHCCS----------TTCCCCS------CGGGCCEE----
T ss_pred C-CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhhhhc----------cCCccce------eeeeeeHh----
Confidence 5 688888888766543 489999999999999885211 11 1222222 58999932
Q ss_pred HHHHhhccccccCCCeEEEEcCCCC
Q psy14715 1110 VADTYLSRDATEKLSSYVVIGPKSN 1134 (1147)
Q Consensus 1110 ~a~k~l~~~~~~~~~~~~vvG~~~~ 1134 (1147)
+ | ++. +++++||..+
T Consensus 331 ---~-~--~~~----~~~~~G~~~~ 345 (352)
T 3cx5_B 331 ---K-L--GKF----NYVAVGDVSN 345 (352)
T ss_dssp ---C-C--CSC----EEEEEESGGG
T ss_pred ---h-c--CCc----eEEEEccccc
Confidence 2 4 444 8999999754
No 35
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.76 E-value=2.7e-18 Score=178.33 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=137.5
Q ss_pred eeEEEecccccEEEEEecCCCCCCCchhHHHHHHHhhcC---ccchhhHhccCCccccccccCC---CceEEEEEeeCC-
Q psy14715 960 KVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTT---KYLLREVREKNGAYGAGAVVSP---SGVIQFYSYRDP- 1032 (1147)
Q Consensus 960 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~---srL~~~lRek~gaY~v~~~~~~---~g~~~~~~~~~~- 1032 (1147)
...+..+.+++++.++|+++++++++.+++.|++.+||+ ||||++|||++++|++++++.. .|.|.+++.+++
T Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~ 94 (197)
T 3ih6_A 15 SVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPG 94 (197)
T ss_dssp -------CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTT
T ss_pred EEEEECCCCCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCC
Confidence 344456678899999999999999999999999999984 8999999997339999987654 788888886655
Q ss_pred -CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhc----cCCCChhhHHHHHHHcCCCHHHHHHHHHHHhcCCHHHH
Q psy14715 1033 -YALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEV----DAPIPPGSKGMSKFLYGKTDEMIEQYRLSVKQVTEDDI 1107 (1147)
Q Consensus 1033 -~~~~~~~~~~~~l~~l~~~~ite~el~~aK~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vT~edi 1107 (1147)
+.+++.+.+.++++++++.+++++||+++|+.+++++ +++...+..+...+++| +++...++.+.|++||++||
T Consensus 95 ~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g-~~~~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 95 MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASG-DWRLFFLQRDRVREAKLDDV 173 (197)
T ss_dssp SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTT-CTTHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCHHHH
Confidence 4788999999999999988999999999999998885 55555566666666666 55667789999999999999
Q ss_pred HHHHHHhhccccccCCCeEEEEcCCC
Q psy14715 1108 RRVADTYLSRDATEKLSSYVVIGPKS 1133 (1147)
Q Consensus 1108 ~~~a~k~l~~~~~~~~~~~~vvG~~~ 1133 (1147)
+++|++||.+++. +++++||+.
T Consensus 174 ~~~a~~~l~~~~~----~~~~~~P~~ 195 (197)
T 3ih6_A 174 QRAAVAYLVRSNR----TEGRYIPTE 195 (197)
T ss_dssp HHHHHHHSSGGGC----EEEEECC--
T ss_pred HHHHHHhCCccCe----EEEEEeCCC
Confidence 9999999998876 889999964
No 36
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.72 E-value=2.7e-17 Score=170.77 Aligned_cols=174 Identities=13% Similarity=0.149 Sum_probs=138.0
Q ss_pred CCCcceEEEEEEccCCCCHHHHHHHHHHHHHhcCCCChHhhHHHHhcCCCCCccccccccCCCcceEEEEEEeCCCCC-c
Q psy14715 424 SENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYEASIHDTLFTVGLQGVDSN-K 502 (1147)
Q Consensus 424 ~~~~~~v~i~~~~~~~~~~~~~~~l~vl~~iL~~~~~s~L~~~lre~~~~~~~s~~~~~~~~~~~~~~~i~~~~~~~~-~ 502 (1147)
+.+++.+.++|++|+..+ ++.+++.+++.+|++|.+|||++.|||+|++ |++++++......+.|.+++ .+.++ +
T Consensus 21 ~~~~~~v~~~~~~~~~~~-~d~~al~vl~~iLggg~sSrL~~~lre~gl~--y~~~~~~~~~~~~g~~~i~~-~~~~~~~ 96 (197)
T 3ih6_A 21 AGGTPLVAAMYHLPAAGS-PDFVGLDLAATILADTPSSRLYHALVPTKLA--SGVFGFTMDQLDPGLAMFGA-QLQPGMD 96 (197)
T ss_dssp -CCSCEEEEEEECCCTTS-TTHHHHHHHHHHHHSSTTSHHHHHHTTTTSC--SEEEEEEETTSSSCEEEEEE-ECCTTSC
T ss_pred CCCCceEEEEEecCCCCC-CcHHHHHHHHHHHcCCCCchHHHHHHhcCce--EEEEeccccccCCeEEEEEE-EECCCCC
Confidence 467899999999998776 7899999999999999999999999987655 67666666556678999998 47777 6
Q ss_pred HHHHHhhhcccchhhhhhccchhhhhhcccCCCCcchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhcccCCch
Q psy14715 503 FDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFG 582 (1147)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~~~~~~~~~~~~~~~~~ 582 (1147)
.+++++ .+.++|+++++.|++++||+++|+.++.++.....+.+
T Consensus 97 ~~~~~~------------------------------------~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~ 140 (197)
T 3ih6_A 97 QDKALQ------------------------------------TLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPE 140 (197)
T ss_dssp HHHHHH------------------------------------HHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHH------------------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 998888 99999999999999999999999999999876544443
Q ss_pred HHHHHHhhhhhccCCChhHhhhHHHHHHHHHHHhhcCccHHHHHHHHHhccCCCeEEEEEecCc
Q psy14715 583 LNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNNPHKLIITMSPEK 646 (1147)
Q Consensus 583 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~ 646 (1147)
.++..+...+.+ +++... ...++.+.+ +|++||++++++||. +++.+++++.|..
T Consensus 141 -~~a~~l~~~~~~-g~~~~~---~~~~~~i~~---vT~~dv~~~a~~~l~-~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 141 -KVGVALSEAIAS-GDWRLF---FLQRDRVRE---AKLDDVQRAAVAYLV-RSNRTEGRYIPTE 195 (197)
T ss_dssp -HHHHHHHHHHHT-TCTTHH---HHHHHHHHT---CCHHHHHHHHHHHSS-GGGCEEEEECC--
T ss_pred -HHHHHHHHHHHc-CCHHHH---HHHHHHHHh---CCHHHHHHHHHHhCC-ccCeEEEEEeCCC
Confidence 577777777666 455443 334444444 366999999999998 5667888888864
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.21 E-value=34 Score=23.08 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q psy14715 545 AVNKTIDEVIAEGFDKERVASV 566 (1147)
Q Consensus 545 ~i~~~l~~l~~~g~~~~el~~~ 566 (1147)
++..+++.++++||+++|+...
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 6788899999999999998764
Done!