RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14715
(1147 letters)
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein; 2.10A
{Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 686 bits (1770), Expect = 0.0
Identities = 279/1014 (27%), Positives = 457/1014 (45%), Gaps = 69/1014 (6%)
Query: 141 FEEGAEVEGFLVKNVTPIPEFQMTAIKLQHVKTLAEYFHLSRDDSNNVFAVAFRTPPPDS 200
++ AE GF + I E + AI +H KT E +S +D N VF V FRTPP DS
Sbjct: 13 GQDEAEKLGFEKVSEEFISECKSKAILFKHKKTGCEVMSVSNEDENKVFGVVFRTPPKDS 72
Query: 201 TGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNL 260
TGI HIL+H LCGS KYP ++PF+++L S+ TF+NA T PD T YP +S N D++NL
Sbjct: 73 TGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNL 132
Query: 261 MSIYLDAVFNPQL--KQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIF 318
+ +YLDAVF P+ F QEGW E D + I +KGVVFNEMKG +S I
Sbjct: 133 VDVYLDAVFFPKCVDDAHTFQQEGWHYELNDP---SEDISYKGVVFNEMKGVYSQPDNIL 189
Query: 319 GEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHL 378
G + P Y SGGDP I NL +E +H+++YHP+N++ + YG+ + L
Sbjct: 190 GRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRL 249
Query: 379 SFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLA-SENQSHIAIAYKCA 437
++ YL +S+ + + + +P +L + + + + + +
Sbjct: 250 RVLS-EYLDMF-EASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLS 307
Query: 438 -VMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYEASIHDTLFTVGLQ 496
+ + L L L+L P +P K L+ESGLG + +G + F
Sbjct: 308 EKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVS-SGLSDELLQPQFG---- 362
Query: 497 GVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAE 556
IGL+GV +++ + T+ ++ E
Sbjct: 363 --------------------------------IGLKGVSEENVQKVEELIMDTLKKLAEE 390
Query: 557 GFDKERVASVLHSLELSLKHQSSN---FGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFK 613
GFD + V + ++++E SL+ ++ GL+L+ + +D D L + L K
Sbjct: 391 GFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALK 450
Query: 614 KHIQE--NPTYLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDRISQMNDQD 671
I E + +++ + NN H++ I M P+ + + EK+IL+ + M ++D
Sbjct: 451 TRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEED 510
Query: 672 LNKVYVNGTELRKEQEKEQN---IDVLPTLKISDVDDHVERVVTTDKHILQVPIQLSTQP 728
L ++ EL+ +QE + +P+L + D+ V T I V +
Sbjct: 511 LAELARATEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLF 570
Query: 729 TNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSH 788
TN + Y V D L EL PLVPLF + +M TK+ F +++QLI TGGIS
Sbjct: 571 TNDIIYTEVVFDIGSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISV-YP 629
Query: 789 LGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELI 848
L S + I+V + D +F++++ L VQ TD RF V+ + +
Sbjct: 630 LTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARME 689
Query: 849 NGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPK--LENILQDIQSIG 906
N + G+GH A + ++++ E GLS++ + + + E I ++ I
Sbjct: 690 NRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIR 749
Query: 907 AHVLRKDSMRCALNMSAQS--NAPERLESFLQSIPGDFTSQPGQTVHSFNVSGIQKVSHV 964
+L ++ + +S N + + FL + + G V ++ + V
Sbjct: 750 RSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLL---PENPSGGLVTWDGRLPLRNEAIV 806
Query: 965 LPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSP-SGV 1023
+P VN+ K+ ++ + V+SK ++ +L VR GAYG SGV
Sbjct: 807 IPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGV 866
Query: 1024 IQFYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPGSKGMSKF 1083
+ SYRDP L+TL +D + FL + + L +A +G +VD+ P +KG S
Sbjct: 867 FSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSSL 926
Query: 1084 ---LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134
L G TDE ++ R + + D + A V + +
Sbjct: 927 LRHLLGVTDEERQRKREEILTTSLKDFKDFAQAID---VVRDKGVAVAVASAED 977
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 603 bits (1555), Expect = 0.0
Identities = 230/1202 (19%), Positives = 439/1202 (36%), Gaps = 190/1202 (15%)
Query: 98 SAKGKLNSTHNNFIRLCTGAFRSSPLDSLFCEMAPEKKFISHSFEEGAEVEGFLVKNVTP 157
+ N + +F ++ +L+ A K E+ + + +
Sbjct: 19 CVQSFTNRADKKRYNVFAKSFINTINTNLYTFKAVMSKTPEWIHEKSPKHNSYDIIEKRY 78
Query: 158 IPEFQMTAIKLQHVKTLAEYFHLSRDDS---NNVFAVAFRTPPPDSTGITHILEHLSLCG 214
EF+MT QH K + L +D FA +T GI HILEH L G
Sbjct: 79 NEEFKMTYTVYQHKKAKTQVISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSG 138
Query: 215 SVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLK 274
S Y ++ + ++ T +NA T D T Y S N+ D+FN+M +Y+D+VF P +
Sbjct: 139 SKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVL 198
Query: 275 Q--LDFMQEGWRLEHEDIKD-----------QNSPIIFKGVVFNEMKGAFSDNSYIFGEA 321
+ F EGW E E +K+ ++ + F G+V+NEMKGA S
Sbjct: 199 ENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHE 258
Query: 322 LMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFI 381
M + P + + SGGDP +I NL YE ++ K+Y+P K F + N + L+F+
Sbjct: 259 EMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFV 318
Query: 382 NTNYLSKINPYQHHRSS-TAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCA--- 437
+ YL +++ ++ + +V + P +I ++ + E ++ +++A+
Sbjct: 319 D-QYLGQLDYSKYRDDAVESVEYQTYKKGPF--YIKKKYGDHSEEKENLVSVAWLLNPKV 375
Query: 438 ------------------------------VMDNFKDVFVLNILGDLLLKGPNAPFYKNL 467
++N D FVL I+ +LL+ P + YK L
Sbjct: 376 DKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKAL 435
Query: 468 VESGLGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERV 527
+ GLG + G S+ +F++GL+G+ N
Sbjct: 436 TDCGLGNNVID-RGLNDSLVQYIFSIGLKGIKRNNEK----------------------- 471
Query: 528 AIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQ--SSNFGLNL 585
E++ + + +V+ EGF+K V + ++++E LK ++ ++
Sbjct: 472 ----IKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDF 527
Query: 586 LFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQ--------------------- 624
+F + +N++ D + + LN K I+ P YL+
Sbjct: 528 VFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGD 587
Query: 625 ----EKVDEYLRNNPHKLIITMSPE------------------KTFDEKLDKVEKDILKD 662
++ + + K I + + + E L+K + D
Sbjct: 588 ENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISD 647
Query: 663 RISQMNDQDLNKVYVNGTELRKEQEKEQNI----------------------DVLPTLKI 700
+ + +N + N E E + D T
Sbjct: 648 LNKKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNN 707
Query: 701 SDVDDHVERVVTTDKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVIN 760
++ +++++ T K+ VPI + PT G+ Y + V L+ + + LF +I
Sbjct: 708 NNNNNNMDYSFTETKYEGNVPILVYEMPTTGIVYLQFVFSLDHLTVDELAYLNLFKTLIL 767
Query: 761 QMRTKNYDFREMDQLIHMSTGGISFNSHLGESCSTPN-----GFEEAILVSSHCLEHNND 815
+ +T + L + G +S N L N + + H L H +
Sbjct: 768 ENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCN 827
Query: 816 KMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKE 875
++ E ++ + ++ + + S G+ M + ++
Sbjct: 828 DALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHN 887
Query: 876 IYSGLSFVSKIKEIAQSPK--LENILQDIQSIGAHVLRKDSMRCALNMSAQS--NAPERL 931
I G K++E + + + + + I + K ++ ++ + +
Sbjct: 888 IIYGYENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNS 947
Query: 932 ESFLQSIPGDF---------------------TSQPGQTVHSFNVSGIQKVSHVLPFPVN 970
L+++ F ++ ++ F+ ++K VLP VN
Sbjct: 948 NESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVN 1007
Query: 971 FTAKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSPSGVIQFYSYR 1030
+ S + V+ L YL VR NGAYG A + G + F S R
Sbjct: 1008 SVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADIEYDGSVVFLSAR 1067
Query: 1031 DPYALETLATFDQSTQFLAD--TKLSVQDLDEAKLGVFKEVDAPIPPGSKGMSKF---LY 1085
DP +TLATF +S + L ++ DL + +D P F +
Sbjct: 1068 DPNLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTIDKPRRGIELSKLSFLRLIS 1127
Query: 1086 GKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN------NLGDE 1139
++++ ++R + ++D + AD S+ + + V+I K N+ E
Sbjct: 1128 NESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFE-KNIVIITTKEKANEYIANVDGE 1186
Query: 1140 WK 1141
+K
Sbjct: 1187 FK 1188
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 108 bits (271), Expect = 9e-25
Identities = 60/345 (17%), Positives = 112/345 (32%), Gaps = 51/345 (14%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCD 256
+TG+ H LEH+ G+ F K + NA T DYT Y
Sbjct: 43 TTGTTGVAHALEHMMFKGTKDVG-PGEFSKRVAAMGGRD-NAFTTRDYTAY--------- 91
Query: 257 YFNL--------MSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMK 308
Y + M + D + N + F +E V+ E +
Sbjct: 92 YQQVPSSRLSDVMGLEADRMANLVVDDELFKKE------------------IQVIAEERR 133
Query: 309 GAFSDNSY-IFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFF 367
D EALM + Y+ G I N+ +++ +++K+ Y P N+
Sbjct: 134 WRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVV 193
Query: 368 SYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQ 427
G+ E K+ + EP R++ + P
Sbjct: 194 VVGDVEHEAVFRLAEQ-TYGKLAR--VEAPARKQQGEPQQAGVRRVTVK---APAE---L 244
Query: 428 SHIAIAYK---CAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLV-ESGLGLSFSPVTGYE 483
++A+A+ +D +D + L IL +L A + LV + +S
Sbjct: 245 PYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSL 304
Query: 484 ASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
+ LF + ++ + + ++ A+G + ++
Sbjct: 305 SRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELS 349
Score = 48.9 bits (117), Expect = 8e-06
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 15/152 (9%)
Query: 983 HKDYVALKVLSKFLT---TKYLLRE-VREKNGAYGAGAVVSPSGVI---QFYSY---RDP 1032
+D AL++L+ L + R+ VR A AGA F
Sbjct: 262 SRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKG 321
Query: 1033 YALETL-ATFDQSTQFLADTKLSVQDLDEAKLGVFKE-VDAPIPPGSKGM---SKFLYGK 1087
+ L + +A ++ +L K + V + + G
Sbjct: 322 VTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGL 381
Query: 1088 TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDA 1119
+ +++ ++ VT +++ A L+ D
Sbjct: 382 SWRDDDRFYQQLRSVTAAEVKAAAARLLTDDT 413
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1
d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 104 bits (261), Expect = 6e-23
Identities = 127/960 (13%), Positives = 290/960 (30%), Gaps = 141/960 (14%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCD 256
P G+ H LEH+SL GS KYP D + L NA T P T + +N D
Sbjct: 57 PEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLK-MHGGSHNASTAPYRTAFYLEVEN--D 113
Query: 257 YFNL-MSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNS 315
+ DA+ P L + +E + V E+ A + +
Sbjct: 114 ALPGAVDRLADAIAEPLLDKKYAERE------------------RNAVNAELTMARTRDG 155
Query: 316 YIFGEALMNNILPTYCYKHVSGGDPIKILNLK----YENLVNYHKKHYHPTNSKFFSYGN 371
+ I P + SGG+ + + + L ++H+K+Y K Y N
Sbjct: 156 MRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSN 215
Query: 372 FNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHIA 431
L L+ + + ++ + + V K +H + + +
Sbjct: 216 KPL-PELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYV------PALPRKVLR 268
Query: 432 IAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYEASIHDTLF 491
+ ++ ++ L+ L + GL S + + + +
Sbjct: 269 VEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVL 328
Query: 492 TVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTID 551
++ L D++ A+ ++
Sbjct: 329 A----------------------------------ISASLTDKGLANRDQVVAAIFSYLN 354
Query: 552 EVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNW 611
+ +G DK+ + + L++ ++ S ++ + WL M + + L+
Sbjct: 355 LLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIR-------VPVEHTLDA 407
Query: 612 FKKHIQENPTYLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDRISQMNDQD 671
+ + ++E++ + I +SP++ ++ V+ D+IS D
Sbjct: 408 VNIADRYDAKAVKERLAMM--TPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFAD 465
Query: 672 LNKVYVNGTELRKEQEKEQNIDVLPTLKISDVDDHVERVVTTDK-HILQVPIQLSTQPTN 730
K + L + D +K DH E +V ++ P +
Sbjct: 466 WQKKAAD-IALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPK 524
Query: 731 GVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNSHLG 790
+ S + + L +Y+ + + + + S N++ G
Sbjct: 525 ADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGI------SFSTNANNG 578
Query: 791 ESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLSSELING 850
++V+++ ++F L E + + T+ ++ + + + +
Sbjct: 579 ------------LMVNANGYTQRLPQLFQALLEGYFSYTATE-DQLEQAKSWYNQMMDSA 625
Query: 851 ISGNGHRYAMSIASSLV-DPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQDIQSIGAHV 909
G A+ A L P + E L ++ L+++ + +
Sbjct: 626 EKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSIT--------------LKEVLAYRDAL 671
Query: 910 LRKDSMRCAL--NMSAQSNAPERLESFLQSIPGDFTSQPGQTVHSFNVSGIQKVSHVLPF 967
+ NM+ + + + + + + + +V +K S +
Sbjct: 672 KSGARPEFMVIGNMT-----EAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEK 726
Query: 968 PVNFTAKSLRGV-----PFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSPSG 1022
N T +L V + +L + + + + E+ Y A G
Sbjct: 727 AGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVG 786
Query: 1023 VIQFYSY------RDPYALE--TLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIP 1074
+ + P L A F + L + + + + V ++ P
Sbjct: 787 RQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR--AMKPDEFAQIQQAVITQMLQA-P 843
Query: 1075 PGSKGMSKFLYGKTD------EMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVV 1128
+ L D + ++ +K +T + + + S +
Sbjct: 844 QTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQIS 903
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 104 bits (261), Expect = 7e-23
Identities = 113/971 (11%), Positives = 279/971 (28%), Gaps = 150/971 (15%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCD 256
PP+ G++H L+H+ G+ KYP + + + L+ A NA T ++T Y F + +
Sbjct: 71 PPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLS-EHAGSSNAFTSGEHTNYYFDVSH--E 127
Query: 257 YFNLMSIYL-DAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNS 315
+ +P + +E V +E + +++
Sbjct: 128 HLEGALDRFAQFFLSPLFDESAKDRE------------------VNAVDSEHEKNVMNDA 169
Query: 316 YIFGEALMNNILPTYCYKHVSGG-------DPIKILNLKYENLVNYHKKHYHPTNSKFFS 368
+ + P + + G P + + L+ +H +Y
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 229
Query: 369 YGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQS 428
G +L D L+ + S++ P + I ++
Sbjct: 230 LGRESL-DDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIV------PIKDIR 282
Query: 429 HIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYEASIHD 488
++ + + + + + LG L+ L G + +
Sbjct: 283 NLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV-GGQKAGARGF 341
Query: 489 TLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNK 548
F + + L ++I + +
Sbjct: 342 MFFI----------------------------------INVDLTEEGLLHVEDIILHMFQ 367
Query: 549 TIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDR 608
I ++ AEG + + ++ + + + +++ + +
Sbjct: 368 YIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHY-------YPLEEV 420
Query: 609 LNWFKKHIQENPTYLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDRISQMN 668
L + P ++ +D+ N I++ K+F+ K D+ E+ +
Sbjct: 421 LTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVS----KSFEGKTDRTEEWYGTQYKQEAI 476
Query: 669 DQDLNKVYVNGTELRKEQEKEQNIDVLPTLKISDVDDHVERVVTTDKHILQVPIQLSTQP 728
+ + N K + +N + +I ++ K +
Sbjct: 477 PDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDD 536
Query: 729 TN----GVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGIS 784
F + + P + L+ ++ E ++
Sbjct: 537 KFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKD------SLNEYAYAAELAGLSYD 590
Query: 785 FNSHLGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFTTLVNTLS 844
+ + +S + + E ++ + RF +
Sbjct: 591 LQNT-----------IYGMYLSVKGYNDKQPILLKKIIEKMATFEIDE-ARFEIIKEAYM 638
Query: 845 SELINGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENI-LQDIQ 903
L N + H++AM L+ V+ ++ E+ ++ L ++ L ++
Sbjct: 639 RSLNNFRAEQPHQHAMYYLRLLMTEVA-----WT-------KDELKEA--LADVTLPRLK 684
Query: 904 SIGAHVLRKDSMRCA----LNMSAQSNAPERLESFLQSIPGDFTSQPGQTVHSFNVSGIQ 959
+ +L + + + A + +E L P Q V
Sbjct: 685 AFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPD 744
Query: 960 KVSHVLPFPVNFTAKSLRGV-----PFLHKDYVALKVLSKFLTTKYL--LREVREKNGAY 1012
+ V S + + + L++ ++ ++ LR +
Sbjct: 745 RGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIV 804
Query: 1013 GAGA-VVSPSGVIQFY--SYRDPYALET-----LATFDQSTQFLADTKLSVQDLDEAKLG 1064
+G + ++F S + P+ LE+ L T ++S + ++ + +
Sbjct: 805 FSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-----DMTEEAFQKHIQA 859
Query: 1065 VFKEVDAPIPPGSKGMSKFLYGKTDE-----MIEQYRLSVKQVTEDDIRRVADTYLSRDA 1119
+ S +K+ + +K +T+ DI + L+ DA
Sbjct: 860 LAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDA 919
Query: 1120 TE--KLSSYVV 1128
K+S +V+
Sbjct: 920 PRRHKVSVHVL 930
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 95.7 bits (238), Expect = 1e-20
Identities = 40/337 (11%), Positives = 92/337 (27%), Gaps = 45/337 (13%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATF---MNAMTGPDYTFYPFS-SQ 252
G H+L L+L S + + + + A+T D+T Y S
Sbjct: 64 NTQEVGFAHLLPRLALMSSASFT-PAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPN 122
Query: 253 NHCDYFNL-MSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAF 311
N D ++ D N + + + +
Sbjct: 123 NRPDLLKDALAWLSDTAGNLAVSEQTVNAA------------------LNTATDPIATFP 164
Query: 312 SDNSY-IFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYG 370
+ + L + L + P+ + E L ++++ Y P + G
Sbjct: 165 QNIQEPWWRYRLKGSSLIGHDPGQ-----PV-TQPVDVEKLKQFYQQWYTPDAMTLYVVG 218
Query: 371 NFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHI 430
N + + I+ + + + R++ A + A P + + Q +
Sbjct: 219 NVDSRSIAAQISKAF----SELKGKRTAPAAVATLAPLPPEPVSLMNEQAA-----QDTL 269
Query: 431 AIAYKCAVMDNFKDVFVLN--ILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYEASIHD 488
++ + +D L+ DL + + L + +
Sbjct: 270 SLMWD-TPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEK-NNQKNLKLGFDCRVQYQR 327
Query: 489 TLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKE 525
+ L + V + + + A G +
Sbjct: 328 AQCAIHL-NTPVENLTANMTFVARELAALRANGLSQA 363
Score = 31.8 bits (72), Expect = 1.7
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 22/173 (12%)
Query: 984 KDYVALKVLSKFLTTKYLLREVREKNGAYGAGA---VVSPSGVIQFYSYRDPYALET-LA 1039
Y + + L + G V + L +
Sbjct: 287 SRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTANMT 346
Query: 1040 TFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPGSKG---------MSKFLYGKTDE 1090
+ L LS + D ++ ++ + G D
Sbjct: 347 FVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDI 406
Query: 1091 MIEQYRLSVKQ----VTEDDIRRVADTYLSRDATEKLSSYVVIGPKSNNLGDE 1139
EQY+ + +T ++ R LS+D + V++ PK +
Sbjct: 407 APEQYQKLRQAFLSGLTLAELNRELKQQLSQDT-----TLVLMQPKGEPEVNV 454
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.7 bits (193), Expect = 9e-15
Identities = 86/542 (15%), Positives = 164/542 (30%), Gaps = 170/542 (31%)
Query: 680 TELRKEQEKEQNI------DVLPTLKISDVDDHVERVVTTD--KHILQVP---------- 721
E + Q + ++I + DV D + +++ + HI+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 722 IQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTG 781
L ++ V F V+ L+ NY F
Sbjct: 69 WTLLSKQEEMVQKF---VEEV-----LRI---------------NYKF------------ 93
Query: 782 GISFNSHLGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLS----ELFNNVQ--LTDLNR 835
S + P+ + + +N++++F + + + ++ L +L
Sbjct: 94 ---LMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 836 FTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSF-VSKIKEIAQSPK 894
++ I+G+ G+G + + V ++ + F + + +
Sbjct: 150 AKNVL-------IDGVLGSGK-------TWVALDVCLSYKVQCKMDFKIFWLN-LKNCNS 194
Query: 895 LENILQDIQSIGAHVLRKDSMRCALNMSAQSNAPERLESFLQSIPGDFTSQP-------- 946
E +L+ +Q + + D + + SN R+ S + S+P
Sbjct: 195 PETVLEMLQKLLYQI---DPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 947 -----GQTVHSFNVSGIQKV------SHVLPFPVNFTAKSLRGVPF---LHKDYVALKVL 992
+ ++FN+S K+ V F T + L D +L
Sbjct: 251 LNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLL 307
Query: 993 SKFLTTKY--LLREVREKNGAYGAGAVVSPSGVIQF-YSYRDPYALETLATFDQSTQFLA 1049
K+L + L REV +P + S RD LAT+D
Sbjct: 308 LKYLDCRPQDLPREVLT----------TNPRRLSIIAESIRDG-----LATWDNWKHVNC 352
Query: 1050 DT-----KLSVQDLDEA-------KLGVFKEVDAPIPPGSKGMSKFLYGKTDEMIEQYRL 1097
D + S+ L+ A +L VF A IP L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTI-------------------LL 392
Query: 1098 SV--KQVTEDDIRRVADTY-----LSRDATEKLSS----YVVIGPKSNNLGD-EWKIVEH 1145
S+ V + D+ V + + + E S Y+ + K N IV+H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1146 DN 1147
N
Sbjct: 453 YN 454
Score = 66.0 bits (160), Expect = 6e-11
Identities = 103/719 (14%), Positives = 188/719 (26%), Gaps = 229/719 (31%)
Query: 250 SSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKG 309
+ Y +++S++ DA + D +D++D K
Sbjct: 12 GEHQYQ-YKDILSVFEDAF----VDNFDC---------KDVQD-------------MPKS 44
Query: 310 AFSDNSY--IFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFF 367
S I + + T L K E +V + N KF
Sbjct: 45 ILSKEEIDHIIMSK--DAVSGTLRL--------FWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 368 SYGNFNLEDHL-SFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASEN 426
E S + Y+ Q R ++ R L E
Sbjct: 95 -MSPIKTEQRQPSMMTRMYIE-----QRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LEL 147
Query: 427 QSHIAIAYKCAV--MDNF-KDVFVLNILGD--LLLKGPNAPFYKNLVESGLGLSFSPVTG 481
+ + + + K L++ + K F+ NL
Sbjct: 148 RPAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------------K 190
Query: 482 YEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDK-ERVAIGLQGVDSNKFD 540
S L E++ + ID D + + + + +
Sbjct: 191 NCNSPETVL--------------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 541 EIKGAVNKT----IDEV----IAEGFDKE-------RVASVLHSL------ELSLKHQSS 579
+K + + V F+ R V L +SL H S
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 580 NF----GLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNNP 635
+LL L + Q+ P E L NP
Sbjct: 297 TLTPDEVKSLL----------------------LKYLDCRPQDLP-------REVLTTNP 327
Query: 636 HKLIITMSPEKTFDEKLDKVE--KDILKDRISQMNDQDLNKVYVNGTELRK--EQ----E 687
+++ E + L + K + D+++ + + LN + E RK ++
Sbjct: 328 --RRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFP 382
Query: 688 KEQNI--DVLPTLKISDVDDHVERVVTT-------DKH-------ILQVPIQLSTQPTNG 731
+I +L + + V VV +K I + ++L + N
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 732 VTYFRSVVD----TSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMSTGGISFNS 787
RS+VD + L Y F S
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQY---------------------------FYS 475
Query: 788 HLGESCSTPNGFEEAILVSSHCLEHNNDKMFDVLSELFNNVQLTDLN------RFTTLVN 841
H+G H + + + +F D R +
Sbjct: 476 HIGH----------------HLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAW 514
Query: 842 TLSSELINGISGNGHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKEIAQSPKLENILQ 900
S ++N + Y I + DP E+ + + L F+ KI+E K ++L+
Sbjct: 515 NASGSILNTLQ-QLKFYKPYICDN--DPKYERL-VNAILDFLPKIEENLICSKYTDLLR 569
Score = 65.6 bits (159), Expect = 7e-11
Identities = 88/683 (12%), Positives = 185/683 (27%), Gaps = 207/683 (30%)
Query: 355 HKKHYH---PTNSKFFSYGNF---NLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWD 408
H H+H T + Y + + + + + D
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--------------------D 40
Query: 409 KPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLV 468
P+ + L+ E HI +M L + LL K + V
Sbjct: 41 MPKSI--------LSKEEIDHI-------IMSKDAVSGTLRLFWTLLSKQEEM--VQKFV 83
Query: 469 ESGLGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
E L Y+ + + T Q S I ++ ++ + F K V+
Sbjct: 84 EEVLR------INYKF-LMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDN--QVFAKYNVS 132
Query: 529 IGLQGVDSNKFDEIKGAVNKTIDE--VIAEG---FDKER-VASVLHSLELSLKHQSSNFG 582
+ +++ A+ + V+ +G K V S ++ +F
Sbjct: 133 R------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDFK 183
Query: 583 LNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTY----------LQEKVDEYLR 632
+ FWL N + L + L + + +Q ++ L+
Sbjct: 184 I---FWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 633 NNPHK--LIITMSPEKTFDEKLDKV-EKDILKDRISQMNDQDLN-KVYVNGTELRKEQEK 688
+ P++ L++ L V +L+ K+ +
Sbjct: 240 SKPYENCLLV-----------LLNVQNAKAWNAF-------NLSCKILL----------- 270
Query: 689 EQNIDVLPTLKISDVDDHVERVVTTDKHILQVPIQLSTQPTNGVTYFRSVVDTS--KLSP 746
T + V D + T HI ++ P + +D L
Sbjct: 271 --------TTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 747 ELKPLVPLFNYVI------NQMRTKNYDFREMDQLIHMSTGGISFNS-------HLGESC 793
E+ P +I N+ D+L + S N + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRL 378
Query: 794 STPNGFEEAILVSSHCL-----EHNNDKMFDVLSELFNNVQLT-DLNRFTTLVNTLSSEL 847
S F + + + L + + V+++L + T + ++ EL
Sbjct: 379 SV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 848 INGISGNG--HR-------------------------------YAMSIASSLVDPVSEQK 874
+ HR + + + ++ +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFR 494
Query: 875 EIYSGLSFV-SKIKE----IAQSPKLENILQDIQSIGAHVLRKDSMRCALNMSAQSNAPE 929
++ F+ KI+ S + N LQ ++ ++ D E
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND------------PKYE 542
Query: 930 RLESFLQSIPGDFTSQPGQTVHS 952
RL + + DF + + +
Sbjct: 543 RLVNAIL----DFLPKIEENLIC 561
Score = 57.9 bits (139), Expect = 2e-08
Identities = 99/728 (13%), Positives = 210/728 (28%), Gaps = 217/728 (29%)
Query: 8 HSHHPPVYLNNIEIKYKE--SHKWLGLIVDSKLNWIPQINYLNNKLKLSSNILKMLNNPS 65
H HH + +YK+ S + + + + + L I ++ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILS-KEEIDHIIMSKD 59
Query: 66 WGLNRSILL---------KIYNSYCRPI--TDYG----SIVYQSAKPSAKGKL-NSTHNN 109
++ ++ L ++ + + +Y I + +PS ++ +
Sbjct: 60 -AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD- 117
Query: 110 FIRLCTG--AF------RSSPLDSL---FCEMAPEKKFISHSFEEGAEVEGF----LVKN 154
RL F R P L E+ P K + G V G + +
Sbjct: 118 --RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----G--VLGSGKTWVALD 169
Query: 155 VTPIPEFQMTAIKLQHVKTLAEYFHLSRDDSNNVFAVAF-RTPPPDSTGITHILEHL-SL 212
V K + +F + P++ +LE L L
Sbjct: 170 V------------CLSYKVQCKM-------DFKIFWLNLKNCNSPET-----VLEMLQKL 205
Query: 213 CGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQ 272
Y + S + + S+ + + L + L V N +
Sbjct: 206 L----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CL--LVLLNVQNAK 257
Query: 273 -LKQLDFMQEGWRL----EHEDIKDQNSPIIFKGVVFNEMKGAFS-DNSY-IFGEALMNN 325
+ ++ + + D S + + + D + + L
Sbjct: 258 AWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 326 I--LPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSFINT 383
LP + V +P ++ ++ E++ + + + N D L+ I
Sbjct: 315 PQDLP----REVLTTNPRRL-SIIAESIRD------GLATWDNWKHVNC---DKLTTIIE 360
Query: 384 NYLSKINP--YQHHRSSTAVLPE----PA------WDKPRQLHIHGRHDPLASENQSHIA 431
+ L+ + P Y+ +V P P W + D + N+ H
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLH-- 412
Query: 432 IAYKCAVMDNFKDVFVL-NILGDLLLKGPNAP-FYKNLVESGLGLSFSPVTGYEASIHDT 489
Y + + +I +L +K N ++++V+ Y
Sbjct: 413 -KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-----------YNI----- 455
Query: 490 LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVAIG--LQGVD-SNKFDEIKGAV 546
+ DS+ + +D+ IG L+ ++ + +
Sbjct: 456 -----PKTFDSDDL------IPPYLDQYFYS-H------IGHHLKNIEHPERMTLFR--- 494
Query: 547 NKTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHIN 606
+D LE ++H S+ W N +++ L
Sbjct: 495 MVFLD---------------FRFLEQKIRHDSTA-------W-----NASGSILNTLQ-- 525
Query: 607 DRLNWFKKHIQENPTYLQEKVDEYLRNNP---HKLIITMSPEKTFDEKLDKVEKDILKDR 663
+L ++K +I +N + V+ L P LI S D+L R
Sbjct: 526 -QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC--SK-----------YTDLL--R 569
Query: 664 ISQMNDQD 671
I+ M + +
Sbjct: 570 IALMAEDE 577
Score = 56.0 bits (134), Expect = 7e-08
Identities = 98/650 (15%), Positives = 191/650 (29%), Gaps = 164/650 (25%)
Query: 158 IPEFQMTAIKLQHVKTLAEYFH--LSRDDSNNVFAVAFRTPPPDSTGITHILEHLSLCGS 215
+ F+ + K + + LS+++ +++ +G + L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-----KDAVSGTLRLFWTL----- 71
Query: 216 VKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNLMSI----YLDAVFN- 270
+ F+ + +Y F + ++M+ D ++N
Sbjct: 72 ----LSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 271 -PQLKQLDFMQEGWRLE-HEDIKD---QNSPIIFKGVVFNEMKG-------AFSDNSYIF 318
+ + RL+ + ++ + P K V+ + + G SY
Sbjct: 123 NQVFAKYNV----SRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 319 GEALMNNIL-PTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFN-LED 376
+ I + + L Y+ N+ + H +N K + ++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQA 232
Query: 377 HLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKP---------------RQLHIHGRHDP 421
L L K PY++ VL + R + D
Sbjct: 233 ELR-----RLLKSKPYEN---CLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVT---DF 280
Query: 422 LASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGL---GLSFSP 478
L++ +HI +D+ + + LLLK Y + L L+ +P
Sbjct: 281 LSAATTTHI-------SLDHHSMTLTPDEVKSLLLK------YLDCRPQDLPREVLTTNP 327
Query: 479 --VTGYEASIHDTLFTV-GLQGVDSNKFDEIIGA-VNKTIDEVIAEGFDK-----ERVAI 529
++ SI D L T + V+ +K II + +N + FD+ I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 530 GLQGV-----DSNKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSSNFGLN 584
+ ++ VNK + E KE S + S+ L LK + N
Sbjct: 388 PTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLEN---- 441
Query: 585 LLFWLVPFMNHDCDVIHLLH--INDRLNWFKKHIQENPTYLQEKVDEYLRNN-PHKLIIT 641
+ LH I D N K ++ D+Y ++ H L
Sbjct: 442 ---------------EYALHRSIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLK-- 482
Query: 642 MSPEKTFDEKLDKVEKDILKDRISQMNDQDLNKVYVNGTELRKEQEKEQNIDVLPTLK-- 699
E++ L R + K+ + T ++ L LK
Sbjct: 483 ---NIEHPERMTLFRMVFLDFRFLE------QKIRHDSTAW---NASGSILNTLQQLKFY 530
Query: 700 ---ISDVDDHVERVVTTDKHILQVP------------IQLSTQPTNGVTY 734
I D D ER+V L ++++ + +
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 74.9 bits (185), Expect = 4e-14
Identities = 53/346 (15%), Positives = 100/346 (28%), Gaps = 65/346 (18%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSSQN 253
+ +G++H LEH+ G + R+ NA T + T Y
Sbjct: 38 TKEESGVSHFLEHMVFKGPEDMDALA-----VNRAFDRMGAQYNAFTSEEATVY------ 86
Query: 254 HCDYFNLMSIYLDA-------VFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNE 306
Y ++ + + P L++ DF E K V+ E
Sbjct: 87 ---YGAVLPEFAYDLLGLFAKLLRPALREEDFQTE------------------KLVILEE 125
Query: 307 MKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKF 366
+ ++ E + + G I L E + YH++ Y P N
Sbjct: 126 IARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVL 185
Query: 367 FSYGNFNLEDHLSFINT--NYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLAS 424
+ G D + + P P ++
Sbjct: 186 AATGRV---DFDRLLAEAERLTEAWPE----GEAERAYPPLT---PAFGVEERPYEKA-- 233
Query: 425 ENQSHIAIAYK-CAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPVTGYE 483
++ + A + + F +L LL + + + LV+ GL S
Sbjct: 234 -RALYLVALFPGVAYQE--EARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVAS---FGL 287
Query: 484 ASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
F + D + E++ + + +D + EG +E V
Sbjct: 288 EEADRAGTFHAYV-QADPARKGEVLAVLQEELDRLGREGVGEEEVE 332
Score = 52.2 bits (126), Expect = 7e-07
Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 32/174 (18%)
Query: 977 RGVPFLHKDYVALKVLSKFL---TTKYLLREVREKNGAYGAGAVVSP---SGVIQFYSYR 1030
GV + + +VL+ L + L + +K A A + +G Y
Sbjct: 243 PGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQA 302
Query: 1031 DP-YALETLATFDQSTQFLADTKLSVQDLDEAK--------LGVFKEVDAPIPPGSK-GM 1080
DP E LA + L + ++++ AK + P+ GM
Sbjct: 303 DPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAG----ETPMQRLFHLGM 358
Query: 1081 SKFLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGP 1131
G+ +E+ + V++VT ++ + + Y ++ P
Sbjct: 359 EYLYTGRYLSLEEVKAR----VQRVTSREVNALLERGFLEKGL-----YYLVLP 403
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 72.6 bits (179), Expect = 2e-13
Identities = 63/350 (18%), Positives = 131/350 (37%), Gaps = 73/350 (20%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSSQN 253
+ GI+H LEH+ G+ ++ + + +NA T +YT Y
Sbjct: 38 SAEENGISHFLEHMFFKGTNTRSAQE-----IAEFFDSIGGQVNAFTSKEYTCY------ 86
Query: 254 HCDYFNLMSIYL--------DAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFN 305
Y ++ + D F+ ++ + +E + VVF
Sbjct: 87 ---YAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKE------------------RKVVFE 125
Query: 306 EMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPI-----KILNLKYENLVNYHKKHYH 360
E+K I + L + Y S G PI + + L +Y + Y
Sbjct: 126 EIKMVDDTPDDIVHDLLSSAT-----YGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYT 180
Query: 361 PTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHD 420
GN + ++ + I S++ P ++ E P ++ R
Sbjct: 181 GDYVVISVAGNVH-DELIDKIK-ETFSQVKP-----TTYNYQGEKPMFLPNRIV---RKK 230
Query: 421 PLASENQSHIAIAYK-CAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLGLSFSPV 479
Q+H+ + Y + D KDV+ L +L ++L ++ ++++ E GL +S V
Sbjct: 231 ET---EQAHLCLGYPGLPIGD--KDVYALVLLNNVLGGSMSSRLFQDIREK-RGLCYS-V 283
Query: 480 TGYEASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
Y +S D+ + T+ G ++ D+++ ++ +T + +G ++ +
Sbjct: 284 FSYHSSFRDSGMLTIYA-GTGHDQLDDLVYSIQETTSALAEKGLTEKELE 332
Score = 51.0 bits (123), Expect = 1e-06
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 44/196 (22%)
Query: 976 LRGVPFLHKDYVALKVLSKFL---TTKYLLREVREKNG-AYGAGAVVSP---SGVIQFYS 1028
G+P KD AL +L+ L + L +++REK G Y + S SG++ Y+
Sbjct: 241 YPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYA 300
Query: 1029 YRDPYAL-ETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPGSKGMSK----- 1082
L + + + ++T LA+ L+ ++L+ K K GS +S
Sbjct: 301 GTGHDQLDDLVYSIQETTSALAEKGLTEKELENGK-EQLK--------GSLMLSLESTNS 351
Query: 1083 ---------FLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIG 1130
L K DEMIEQ + V + D+ R+A LS + +I
Sbjct: 352 RMSRNGKNELLLKKHRSLDEMIEQ----INAVQKQDVSRLAKILLSASPS-----ISLIN 402
Query: 1131 PKSNNLGDEWKIVEHD 1146
L +EH
Sbjct: 403 AN-GELPKALIHLEHH 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.2 bits (179), Expect = 4e-13
Identities = 111/697 (15%), Positives = 200/697 (28%), Gaps = 259/697 (37%)
Query: 81 CRPIT-DYGSIVYQSAKPSAKGKLNSTHNNFIRLCTGAFRSSPLDSLFCEMAPE--KKFI 137
RP+T +GS+ + P+ ++ F +S L F ++ PE + F
Sbjct: 6 TRPLTLSHGSLEHVLLVPT------ASF----------FIASQLQEQFNKILPEPTEGFA 49
Query: 138 SHSFEEGAEVE------GFLVKNVTPIPEFQMTAIKLQHVKTLAEYFH---LSRDDSNNV 188
+ E E G++ V P Q + + F L N++
Sbjct: 50 ADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQV----LNLCLTEFENCYLE---GNDI 101
Query: 189 FAVAFRTPPPDSTGITH----ILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDY 244
A+A + + T + I +++ K P + S A F G +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-----SNS-ALFRAVGEG-NA 154
Query: 245 TFYP-FSSQ-NHCDYFN-LMSIYLDAVFNPQLKQL-DFMQEGWRLEHEDIKDQNSPIIF- 299
F Q N DYF L +Y ++ + L F E L ++ +F
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLY--QTYHVLVGDLIKFSAE--TLSELIRTTLDAEKVFT 210
Query: 300 KGVVFN-----EMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDP-IKILNLKYENLVN 353
+G N E D Y+ +S P I ++ L +
Sbjct: 211 QG--LNILEWLENPSNTPDKDYL-------------LSIPISC--PLIGVI-----QLAH 248
Query: 354 Y----HKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDK 409
Y + P L +L T + + ++ A+ +W+
Sbjct: 249 YVVTAKLLGFTPG----------ELRSYLKGA-TGHSQGL------VTAVAIAETDSWE- 290
Query: 410 PRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVE 469
S K + +L F+
Sbjct: 291 ------------------SFFVSVRKA-----------ITVL-----------FF----- 305
Query: 470 SGLGL----SFSPVTGYEASIHDTLFTVG---------LQGVDSNKFDEIIGAVNKTIDE 516
+G+ ++ P T SI + + + + + + N +
Sbjct: 306 --IGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 517 VIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKH 576
++V I L VN + V++ G L+ L L+L+
Sbjct: 363 -------GKQVEISL--------------VNGAKNLVVS-GP-----PQSLYGLNLTLRK 395
Query: 577 QSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEKVDEYLRNNPH 636
+ GL+ Q + + K+ R P
Sbjct: 396 AKAPSGLD--------------------------------QSRIPFSERKLKFSNRFLP- 422
Query: 637 KLIITMSPEKTFDEKL-----DKVEKDILKDRISQMNDQDLNK-VY--VNGTELRKEQEK 688
+ SP F L D + KD++K+ +S N +D+ VY +G++LR
Sbjct: 423 ---VA-SP---FHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLRVLSG- 473
Query: 689 EQNIDVLPTLKISDVD----DHV--ERVVTTDK-HIL 718
+ + VD V E HIL
Sbjct: 474 ----SISERI----VDCIIRLPVKWETTTQFKATHIL 502
Score = 48.1 bits (114), Expect = 2e-05
Identities = 71/423 (16%), Positives = 131/423 (30%), Gaps = 144/423 (34%)
Query: 804 LVSSH-CLEHNNDKMFDVLSELFNNV-QLTDLNRFTTLVNTLSSELINGISGNGHRYAMS 861
L SH LEH V + F QL + +F ++ +
Sbjct: 9 LTLSHGSLEHV----LLVPTASFFIASQLQE--QFNKILPEPTEGFAADD---------- 52
Query: 862 IASSLVDPVSEQKEIYSG-LSFVSKIKEIAQSPKLENILQ--------------DIQSIG 906
+P + E+ L +VS + E ++ + + +L DI ++
Sbjct: 53 ------EPTTPA-ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 907 AHVL---------RKDSMRCALNMSAQSNAP--ERLESFLQSIPGDFTSQPGQTVHSFNV 955
A +L K+ ++ + + P ++ S L F + +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGNAQLVAI 159
Query: 956 SGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVAL-----KVLSKFLTTKYLLREVREKNG 1010
G Q + F + LR L++ Y L K ++ L+ L+R +
Sbjct: 160 FGGQGNTDD-YF------EELRD---LYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEK 207
Query: 1011 AYGAG---------------------AVVS-P-SGVIQFYSYR--------DPYALET-- 1037
+ G +S P GVIQ Y P L +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 1038 ---------------LATFDQSTQFLADTKLSVQDLDEAKLGV-FKEVDAP---IPPGSK 1078
+A D F + ++ L +GV E P +PP
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEA-YPNTSLPP--S 322
Query: 1079 GMSKFLYGKTDEMIEQYRLSVKQVT----EDDIRRVADTYLSRDATEKLS------SYVV 1128
+ L +E + LS+ +T +D + + +++L ++S + VV
Sbjct: 323 ILEDSLEN--NEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQVEISLVNGAKNLVV 379
Query: 1129 IGP 1131
GP
Sbjct: 380 SGP 382
Score = 47.4 bits (112), Expect = 3e-05
Identities = 107/676 (15%), Positives = 181/676 (26%), Gaps = 270/676 (39%)
Query: 568 HSLE-LSLKHQSSNFGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQENPTYLQEK 626
+S L+L H S LVP + + ++ F K + E PT
Sbjct: 4 YSTRPLTLSHGSLEHV-----LLVPTASF----FIASQLQEQ---FNKILPE-PTEGFAA 50
Query: 627 VDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDRISQMNDQDLNKVYVNGTELRKEQ 686
DE +P + + L V + ++ Q DQ LN
Sbjct: 51 DDE-----------PTTPAELVGKFLGYVSSLVEPSKVGQF-DQVLNLCL---------T 89
Query: 687 EKEQNIDVLPTLKISDV-------DDHVERVVTTDKHILQVPIQLSTQPTNGVTYFRSVV 739
E E L+ +D+ + + K +++ Y + +
Sbjct: 90 EFENCY-----LEGNDIHALAAKLLQENDTTLVKTKELIK-------------NYITARI 131
Query: 740 DTSKLSPELKPLVP-LFNYVINQMRTKNYD-FREMDQLIHMSTGGISFNSHLGESCSTPN 797
+ P K LF V + + F GG
Sbjct: 132 MAKR--PFDKKSNSALFRAV-GEGNAQLVAIF-----------GG--------------Q 163
Query: 798 GFEEAILVSSHCLEHNNDKMFDVLSELFN--NVQLTDL-NRFTTLVNTLSSE-------- 846
G N D F+ L +L+ +V + DL ++ L
Sbjct: 164 G--------------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 847 ---------LINGISGNGHRYAMSIASSL-------------------VDPVSEQKEIYS 878
L N + Y +SI S P E +
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP-GELRSYLK 268
Query: 879 GLSFVSK-I---KEIAQSPK----LENILQDIQ---SIGAHVLRKDSMRCALNMSAQSNA 927
G + S+ + IA++ ++ + I IG RC
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--------RC------YEAY 314
Query: 928 PERLESFLQSIPGDFTSQPGQTVHS--FNVSG---------IQKVSHVLPF--------- 967
P S SI D + + + V S ++S + K + LP
Sbjct: 315 PNT--SLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 968 --PVNF----TAKSLRG-VPFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSP 1020
N +SL G L K K S ++ E K
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRK----AKAPSGLDQSRIPFSE--RK-----------L 414
Query: 1021 SGVIQFYSYRDPYALETLATFDQSTQFLAD-TKLSVQDLDEAKLGVFKEVDAPIPPGSKG 1079
+F L + F + L + L +DL + + F D IP
Sbjct: 415 KFSNRF--------LPVASPF--HSHLLVPASDLINKDLVKNNV-SFNAKDIQIP----- 458
Query: 1080 MSKFLYGKTDEMIEQYRLSVKQVTED--DIRRVADTYLSR-------------DATEKLS 1124
+Y T D D+R ++ + R T+ +
Sbjct: 459 ----VYD----------------TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 1125 SYVVI-GP-KSNNLGD 1138
++++ GP ++ LG
Sbjct: 499 THILDFGPGGASGLGV 514
Score = 45.4 bits (107), Expect = 1e-04
Identities = 62/373 (16%), Positives = 105/373 (28%), Gaps = 133/373 (35%)
Query: 665 SQ---MNDQDLNKVYVNGTELRKEQEKEQNIDVLPTLKISDVDDHV-ERVVTTDKHILQV 720
SQ M G +L K S V R D H
Sbjct: 1626 SQEQGM-----------GMDLYKT---------------SKAAQDVWNRA---DNHFKD- 1655
Query: 721 PIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNYVINQMRTKNYDFREMDQLIHMST 780
TY S++D +P L F + +NY
Sbjct: 1656 ------------TYGFSILDIVINNP--VNLTIHFGGEKGKRIRENYS------------ 1689
Query: 781 GGISFNSHLGESCSTPNGFEEA-ILVSSHCLEHNNDKMFDVLSELFNNVQLTDLNRFT-- 837
+ F + + T F+E +S+ + T +FT
Sbjct: 1690 -AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-----------AT---QFTQP 1734
Query: 838 --TLVNTLSSELI--NGISGN-----GHRYAMSIASSLVDPVSEQKEIYSGLSFVSKIKE 888
TL+ + E + G+ GH SL E Y+ L+ ++ +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGH--------SL----GE----YAALASLADVMS 1778
Query: 889 IAQSPKLENI----LQDIQSIGAHVLRKDSMRCALNMS--AQSNAPERLESFLQSIPGDF 942
I ++ +Q M A+N A S + E L+ ++ +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGRVAASFSQEALQYVVERV---- 1833
Query: 943 TSQPGQTVHS---FNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHK--DYVALK--VLSKF 995
+ G V +NV Q V+ A LR + + +++ L+ + +
Sbjct: 1834 GKRTGWLV-EIVNYNVENQQYVA----------AGDLRALDTVTNVLNFIKLQKIDIIE- 1881
Query: 996 LTTKYLLREVREK 1008
L L EV
Sbjct: 1882 LQKSLSLEEVEGH 1894
Score = 44.3 bits (104), Expect = 3e-04
Identities = 84/528 (15%), Positives = 161/528 (30%), Gaps = 182/528 (34%)
Query: 716 HILQVPI-------QLSTQPTNGVTYFRSVV--DTSKLSPELKP-----LVPLF-NYVIN 760
H+L VP QL Q F ++ T + + +P LV F YV +
Sbjct: 18 HVLLVPTASFFIASQLQEQ-------FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 761 QMRTKNYDFREMDQLIHMSTGGISFNSHLGESCSTPNGFEEAILVSS--HC----LEHNN 814
+ + DQ++++ L E FE L + H L N
Sbjct: 71 LVEPSKVG--QFDQVLNLC---------LTE-------FENCYLEGNDIHALAAKLLQEN 112
Query: 815 D----KMFDVLSELFNNVQLTDLNRFTTLVNTLSSELINGIS-------------GNGHR 857
D K +++ + R +S L + GN
Sbjct: 113 DTTLVKTKELIKNYITARIMA--KRPFD--KKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 858 YAMSIASSLVDPVSEQKEIY-SGLSFVSKIKEIAQSPKLENILQ---DIQSIGAHVLRKD 913
Y E +++Y + V + + + + L +++ D + + L +
Sbjct: 169 Y-----------FEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAEKVFTQGL--N 214
Query: 914 SMRCALNMSAQSNAPERLESFLQSIPGDFTSQPG----QTVHSFNVSGIQKVSHVLPF-P 968
+ + SN P+ + +L SIP S P Q H + V + +L F P
Sbjct: 215 ILEW---LENPSNTPD--KDYLLSIP---ISCPLIGVIQLAH-YVV-----TAKLLGFTP 260
Query: 969 VNFTAKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSPSGVIQFYS 1028
L+G + V +++ + + VR+ A+ + F+
Sbjct: 261 GEL-RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--------AIT-----VLFFI 306
Query: 1029 -YRDPYALETLATFDQSTQFLADTK----------LSVQDLDEAKLGVF-KEVDAPIPPG 1076
R E L D+ LS+ +L + ++ + + ++ +P G
Sbjct: 307 GVR---CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 1077 SK-------GMSKF--------LYGKTDEMIEQYRLSVKQVTEDDIRRVADT-------- 1113
+ G LYG + R K + D R+ +
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYG----LNLTLR-KAKAPSGLDQSRIPFSERKLKFSN 418
Query: 1114 ------------YLSRDATEKLSSYVVIGPKSNNL---GDEWKI-VEH 1145
L A++ ++ + NN+ + +I V
Sbjct: 419 RFLPVASPFHSHLL-VPASDLINKDL----VKNNVSFNAKDIQIPVYD 461
Score = 36.6 bits (84), Expect = 0.058
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 42/99 (42%)
Query: 1076 GS--KGMSKFLYGKTDE-----------MIEQYRLSVKQVTEDD------------IRRV 1110
GS +GM LY + + Y S+ + ++ +R+
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 1111 ADTYLS-----------------RDATEKLSSYVVIGPK 1132
+ Y + ++ E +SY K
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Score = 36.2 bits (83), Expect = 0.087
Identities = 42/289 (14%), Positives = 79/289 (27%), Gaps = 113/289 (39%)
Query: 900 QDIQSIGAHVLRKDSMRCALNMSAQSNAP------ERLESFLQ-----SIPGDFTSQPGQ 948
Q Q G M M + R ++ + SI + P
Sbjct: 1624 QGSQEQG--------M----GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN 1671
Query: 949 -TVHSFNVSGIQKVSH---VLPFPVNFTAKSLRGVPFLHKDYVALK--------VLSK-- 994
T+H F +++ + F K F + + +LS
Sbjct: 1672 LTIH-FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 995 ------FLTTKYLLREVREK----NGAYGAG-------AVVSPSGVIQFYSYRDPYALET 1037
L K +++ K A AG A+ S + V
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-------------- 1776
Query: 1038 LATFDQSTQFLADTKLSVQDLDEAKLGVF---KEVDAPIPPGSKGMSKFLYGKTDEMIEQ 1094
+S++ L ++ VF + +P G S YG MI
Sbjct: 1777 ---------------MSIESL--VEV-VFYRGMTMQVAVPRDELGRSN--YG----MIA- 1811
Query: 1095 YRLSVKQV----TEDDIRRVADTYLSRDATEKLS---------SYVVIG 1130
++ +V +++ ++ V + + + + YV G
Sbjct: 1812 --INPGRVAASFSQEALQYVVER-VGKRTGWLVEIVNYNVENQQYVAAG 1857
Score = 31.6 bits (71), Expect = 2.0
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 46/182 (25%)
Query: 43 QINYLNNKLKLSSNI-LKMLNNPS-----------WGLNRSILLKIYNSYCRPITDYGSI 90
+N N+ L + + ++N +GLN + L K D
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-LRKAK---APSGLD---- 403
Query: 91 VYQSAKPSAKGKLNSTHNNFIRLCTGAFRSSPLDSLFCEMAPEKKFISHSFEEGAEVEGF 150
QS P ++ KL N F+ + +SP S + P I+ + V F
Sbjct: 404 --QSRIPFSERKL-KFSNRFLPV------ASPFHSHL--LVPASDLINKDLVKN-NVS-F 450
Query: 151 LVKNVTPIPEFQMTAIKLQHVKTLAEYFHLSRDDSNNVFAVAFRTP----PPDSTGITHI 206
K++ IP + ++ LS S + R P THI
Sbjct: 451 NAKDIQ-IPVY--------DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 207 LE 208
L+
Sbjct: 502 LD 503
Score = 31.6 bits (71), Expect = 2.3
Identities = 65/469 (13%), Positives = 123/469 (26%), Gaps = 173/469 (36%)
Query: 73 LLKIYNSYCRPITDYGSIVYQSAKPSAKGKLNSTHNNFIRLCTGAFRSSPLDSLFCEMAP 132
L +Y +Y + + I+ E+
Sbjct: 173 LRDLYQTY-HVLVG----------------------DLIKFSA---------ETLSELIR 200
Query: 133 EKKFISHSFEEGAEVEGFLVK-NVTPIPEFQMTA------IKL-Q--HVKTLAEYFHLSR 182
F +G + +L + TP ++ ++ I + Q H A+ +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 183 DDSNNVF------------AVAFRTPPPDS-----TGITHILEHLSLCGSV---KYPCRD 222
+ + AVA DS + + L G YP
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAE--TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 223 PFMKMLTRSM------ATFMNAMTGPDYTFYPFSSQNHCDYFNLM-----SIYLDAVFN- 270
+L S+ + M +++ Q++ + N + + ++ N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQ----VQDYVNKTNSHLPAGKQVEI-SLVNG 373
Query: 271 ---------PQ-LKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGE 320
PQ L L+ + + DQ+ + F+E K FS N +
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLR--KAKAPSGLDQSR------IPFSERKLKFS-NRF---- 420
Query: 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSF 380
LP P +H P + +L +
Sbjct: 421 ------LPVAS--------P-------------FHSHLLVPASDLINK----DLVKNNVS 449
Query: 381 INTNYLSKINP-Y--------QHHRSST------AVLPEPA-WDKPRQLHIHGRH----D 420
N + +I P Y + S ++ P W+ H
Sbjct: 450 FNAKDI-QI-PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET--TTQFKATHILDFG 505
Query: 421 PLASENQSHIAIAYKCAVMDNFKD---VFVLNILGDLLLKGPNAPF-YK 465
P + S + + KD V V I+ L P+ + +K
Sbjct: 506 PGGA---SGLG-----VLTHRNKDGTGVRV--IVAGTLDINPDDDYGFK 544
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 69.2 bits (170), Expect = 3e-12
Identities = 54/349 (15%), Positives = 102/349 (29%), Gaps = 53/349 (15%)
Query: 189 FAVAFRTPP---PDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYT 245
+ F ++ G+ + + G + + D
Sbjct: 38 LRLIFAAGSSQDGNAPGVALLTNAMLNEGVAGKDVGA-IAQGFEG-LGADFGNGAYKDMA 95
Query: 246 FYPFSSQNHCDYFNL-MSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVF 304
S + D + ++ + V P IK+Q +
Sbjct: 96 VASLRSLSAVDKREPALKLFAEVVGKPTFPADSL---------ARIKNQ---------ML 137
Query: 305 NEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNS 364
+ + + LM + T+ Y H S GD I + L +H K Y N
Sbjct: 138 AGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAKAYAAGNV 197
Query: 365 KFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLAS 424
G+ + D + + + + A + +PA K HI P +
Sbjct: 198 VIALVGDLSRSDAEAIAAQ-VSAALPK----GPALAKIEQPAEPKASIGHI---EFPSS- 248
Query: 425 ENQSHIAIAYKCAVMDNFKDVF---VLN-ILGDLLLKGPNAPF----YKNLVESGLGLSF 476
Q+ + +A D+ D + N ILG G F + E GL++
Sbjct: 249 --QTSLMLAQLGIDRDD-PDYAAVSLGNQILG-----GGG--FGTRLMSEVREK-RGLTY 297
Query: 477 SPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKE 525
+G+ F + LQ + + + V E + G ++
Sbjct: 298 GVYSGFTPMQARGPFMINLQ-TRAEMSEGTLKLVQDVFAEYLKNGPTQK 345
Score = 62.7 bits (153), Expect = 3e-10
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 21/172 (12%)
Query: 977 RGVPFLHKDYVALKVLSKFL----TTKYLLREVREKNG-AYGAGAVVSP---SGVIQFY- 1027
G+ DY A+ + ++ L L+ EVREK G YG + +P G
Sbjct: 257 LGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINL 316
Query: 1028 SYRDPYALETLATFDQSTQFLADTKLSVQDLDEAK---LGVF---KEVDAPIPPGSKGMS 1081
R + TL + ++LD+AK G F +A I + +
Sbjct: 317 QTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADI--VGQLGA 374
Query: 1082 KFLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133
Y +E + +++T + ++ + +L+ D V GP
Sbjct: 375 MGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKM----VIVSAGPTV 422
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 67.3 bits (165), Expect = 1e-11
Identities = 57/340 (16%), Positives = 106/340 (31%), Gaps = 52/340 (15%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTR--SMATFMNAMTGPDYTFYPFSS-QN 253
P D G+ + L G+ + R + + D + +
Sbjct: 40 PADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSS 99
Query: 254 HCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSD 313
+ + ++I D + +P +E + ++ A +
Sbjct: 100 PAERNSALTILRDILAHPTFPAPVLERE------------------RARAIAGLREAQTQ 141
Query: 314 NSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFN 373
I G + Y HV + + + LV++H+ HY + G+
Sbjct: 142 PGSILGRRFTELAYGKHPYGHV--SSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDIT 199
Query: 374 LEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQSHIAIA 433
+ + + + ++ LP+PA + I +P Q+HIAI
Sbjct: 200 RAEAETIAQQ-LTADLPA----GATLPPLPDPAMPRATVERI---ANPAT---QAHIAIG 248
Query: 434 YKCAVMDNFKDVF---VLN-ILGDLLLKGPNAPF----YKNLVESGLGLSFSPVTGYEAS 485
+ D F V N LG G F K + + GLS+ + +
Sbjct: 249 MPTLKRGD-PDFFPLVVGNYALG-----G--GGFESRLMKEIRD-KRGLSYGAYSYFSPQ 299
Query: 486 IHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKE 525
LF +G + K DE + N T+D + EG
Sbjct: 300 KSMGLFQIGF-ETRAEKADEAVQVANDTLDAFLREGPTDA 338
Score = 60.8 bits (148), Expect = 1e-09
Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 31/178 (17%)
Query: 976 LRGVPFLHKDYVALKVLSKFL----TTKYLLREVREKNG-AYGAGAVVSP---SGVIQFY 1027
+ + D+ L V + L L++E+R+K G +YGA + SP G+ Q
Sbjct: 249 MPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIG 308
Query: 1028 SY-RDPYALETLATFDQSTQFLADTKLSVQDLDEAK---LGVFKEVDAPIPPG----SKG 1079
R A E + + + + +L AK + F +K
Sbjct: 309 FETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGF-------ALRLDSNAKI 361
Query: 1080 MSKF----LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133
+ + YG + ++ Y V+ VT + +R ++ R+ VV+G K+
Sbjct: 362 LGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKREN----LITVVVGGKA 415
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 66.6 bits (163), Expect = 2e-11
Identities = 50/360 (13%), Positives = 101/360 (28%), Gaps = 65/360 (18%)
Query: 191 VAFRTPP-PDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYP- 248
V F T ++ +L L S+ YP + + L +
Sbjct: 29 VRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWF 88
Query: 249 -FSSQNHCDYFNLMSIYL--------DAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIF 299
S D++ S L + +F P ++ F E + E
Sbjct: 89 NISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAE--TFQRE----------- 135
Query: 300 KGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSG----GDPIKILNLKYENLVNYH 355
K + ++ D AL + + G + +L Y+
Sbjct: 136 KENLKAYLESIVEDKQTYASLALQSVY---FNQSEDQKIPSFGTVAALAEETAASLAAYY 192
Query: 356 KKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHI 415
+K F G+ N + + + + + +P + +
Sbjct: 193 QKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTP----REEGKAAIFYNQPIRNVIEERTE 248
Query: 416 HGRHDPLASENQSHIAIAYKCAVMDNFKDVF---VLN-ILGDLLLKGPNAPFYKNLVESG 471
+ L QS + +AY + F V N I G P++ + N+ E
Sbjct: 249 ---REVL---AQSKLNLAYNTDIYYGDSYYFALQVFNGIFGG----FPHSKLFMNVREK- 297
Query: 472 LGL------SFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKE 525
L S G TV G+D ++++ ++ ++ + +
Sbjct: 298 EHLAYYASSSIDTFRG--------FMTVQT-GIDGKNRNQVLRLISTELENIRLGKIREL 348
Score = 49.2 bits (118), Expect = 6e-06
Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 24/171 (14%)
Query: 978 GVPFLHKDYVALKVLSKFL---TTKYLLREVREKNG-AYGAGAVVSP-SGVIQFYSYRDP 1032
+ + Y AL+V + L VREK AY A + + G + + D
Sbjct: 264 DIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDG 323
Query: 1033 -YALETLATFDQSTQFLADTKLSVQDLDEAK---LGVFKE-VDAPIPPGSK----GMSKF 1083
+ L + + K+ ++++ K + +D G+ +++
Sbjct: 324 KNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDN---AGAWLEKEYLNEL 380
Query: 1084 LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134
+ E++ + VT +I+ VA L A + + G N
Sbjct: 381 MPQTMLT-AEEWIARINAVTIPEIQEVAKR-LELQAI-----FFLEGETEN 424
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 65.7 bits (161), Expect = 4e-11
Identities = 48/348 (13%), Positives = 98/348 (28%), Gaps = 62/348 (17%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSSQN 253
+ G + +EHL+ G+ P L + + + +NA + ++T Y + +
Sbjct: 49 SEKNNGAGYFVEHLAFKGTKNRPGNA-----LEKEVESMGAHLNAYSTREHTAYYIKALS 103
Query: 254 HCDYFNLM-SIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS 312
+ D V N L+ +E + V+ E++ +
Sbjct: 104 --KDLPKAVELLADIVQNCSLEDSQIEKE------------------RDVILQELQENDT 143
Query: 313 DNSYIFGEALMNNILPTYCYKHVSGGDPI-----KILNLKYENLVNYHKKHYHPTNSKFF 367
+ L ++ + + L +L Y +HY
Sbjct: 144 SMRDVVFNYLHAT-----AFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLA 198
Query: 368 SYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASENQ 427
+ G L + S ++ + P Q+ R D L
Sbjct: 199 AAGGLEHRQLLDLAQ-KHFSGLSG--TYDEDAVPTLSPCRFTGSQICH--REDGL---PL 250
Query: 428 SHIAIAYK-CAVMDNFKDVFVL----NILGDLLLKGP----NAPFYKNLVESGLGLSFSP 478
+H+AIA + D L I+G + ++ + L S
Sbjct: 251 AHVAIAVEGPGWAH--PDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATN-KLCQS- 306
Query: 479 VTGYEASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKE 525
+ DT L D D+++ + + + E
Sbjct: 307 FQTFNICYADTGLLGAHF-VCDHMSIDDMMFVLQGQWMRLCTSATESE 353
Score = 42.6 bits (101), Expect = 6e-04
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 31/179 (17%)
Query: 976 LRGVPFLHKDYVALKVLSKFLTTKY-----------LLREVREKNG-AYGAGAVVSP--- 1020
+ G + H D VAL+V + + L + N
Sbjct: 257 VEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYAD 316
Query: 1021 SGVIQFYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEAK----LGVFKEVDAPIPPG 1076
+G++ + D +++ + Q T + ++ K + +D P
Sbjct: 317 TGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVC 376
Query: 1077 SK-GMSKFLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGP 1131
G S YG+ E + + +V +R V Y ++ + GP
Sbjct: 377 EDIGRSLLTYGRRIPLAEWESR----IAEVDARVVREVCSKYF----YDQCPAVAGFGP 427
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc
genomics, PSI-2, protein structure initiative, midwest
CENT structural genomics; 2.15A {Bordetella pertussis}
PDB: 3ivl_A
Length = 197
Score = 61.6 bits (150), Expect = 1e-10
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 404 EPAWDKPRQLHIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPF 463
EP D R + + + +A Y + D L++ +L P++
Sbjct: 7 EPVQDGERSVTLR------RAGGTPLVAAMYHLPAAGS-PDFVGLDLAATILADTPSSRL 59
Query: 464 YKNLVESGLGLSFSPVTGYEASIHD-TLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGF 522
Y LV + L V G+ D L G Q D+ + + T++ + ++ F
Sbjct: 60 YHALVPTKLASG---VFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPF 116
Query: 523 DKERVA 528
+E +
Sbjct: 117 SQEELE 122
Score = 57.8 bits (140), Expect = 2e-09
Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 18/188 (9%)
Query: 942 FTSQPGQTVHSFNVSGIQKVSHVLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLT---T 998
+T +P Q G + V+ A D+V L + + L +
Sbjct: 4 YTVEPVQD-------GERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPS 56
Query: 999 KYLLREVREKNGAYGAGAVVSPS---GVIQFY-SYRDPYALETL-ATFDQSTQFLADTKL 1053
L + A G G+ F + + T + + L+
Sbjct: 57 SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPF 116
Query: 1054 SVQDLDEAKLGVFKE-VDAPIPPGSKGM--SKFLYGKTDEMIEQYRLSVKQVTEDDIRRV 1110
S ++L+ A+ P G+ S+ + + R V++ DD++R
Sbjct: 117 SQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQRA 176
Query: 1111 ADTYLSRD 1118
A YL R
Sbjct: 177 AVAYLVRS 184
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 63.4 bits (155), Expect = 2e-10
Identities = 50/354 (14%), Positives = 111/354 (31%), Gaps = 74/354 (20%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSSQN 253
P + G++++ +++ L A +++ D+ Y SS
Sbjct: 37 NPYNNGVSNLWKNIFLSKENS------------AVAAKEGLALSSNISRDFQSYIVSSLP 84
Query: 254 HCDYFNLM-SIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS 312
+ + + L + + K V +++ F
Sbjct: 85 --GSTDKSLDFLNQSFIQQKANLLS---------SSNFEAT------KKSVLKQVQ-DFE 126
Query: 313 DNSYIFGEALMNNILPTYCYKHVSGGDPI-----KILNLKYENLVNYHKKHYHPTNSKFF 367
DN + ++ ++ T +++ P + NL +L ++ H+ +N+
Sbjct: 127 DNDH--PNRVLEHLHST-AFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVV 183
Query: 368 SYGNFNLEDHLSFIN--TNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASE 425
GN H +N + + + VL + A ++ + R D L
Sbjct: 184 GTGNI---KHEDLVNSIESKNLSLQT-----GTKPVLKKKAAFLGSEVRL--RDDTL--- 230
Query: 426 NQSHIAIAYK-CAVMDNFKDVFVL----NILGDLLLKGPNAPF-----YKNLVESGLGLS 475
++ I++A + V + FV I G P + N+ E L +
Sbjct: 231 PKAWISLAVEGEPVNS--PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDN 288
Query: 476 FSPVTGYEASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
F+ + S D+ L+ + D++I K + + V
Sbjct: 289 FNH---FSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRL-TISVTDTEVE 338
Score = 44.5 bits (106), Expect = 2e-04
Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 38/184 (20%)
Query: 976 LRGVPFLHKDYVALKVLSKFL------------TTKYLLREVREKNGAYGAGAVVSP--- 1020
+ G P +Y K+ ++ LL ++E
Sbjct: 239 VEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKD 298
Query: 1021 SGVIQFY-SYRDPYALETLATFDQSTQFLADTKLSVQDLDEAK--------LGVFKEVDA 1071
SG+ F + R+ ++ L F ++ +++ AK E
Sbjct: 299 SGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLY--ESGN 356
Query: 1072 PIPPGSK-GMSKFLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYV 1127
P+ + G + G E ++ + +T D++ A L ++ +
Sbjct: 357 PVNDANLLGAEVLIKGSKLSLGEAFKK----IDAITVKDVKAWAGKRL----WDQDIAIA 408
Query: 1128 VIGP 1131
G
Sbjct: 409 GTGQ 412
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 61.5 bits (150), Expect = 9e-10
Identities = 61/356 (17%), Positives = 107/356 (30%), Gaps = 67/356 (18%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSSQN 253
+ G H LEHL+ G+ P + + + +NA T + T Y S
Sbjct: 43 NVKNNGTAHFLEHLAFKGTQNRPQQG-----IELEIENIGSHLNAYTSRENTVYYAKSLQ 97
Query: 254 HCDYFNLM-SIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS 312
+ I D + L +E E + V+ E +
Sbjct: 98 --EDIPKAVDILSDILTKSVLDNSA-------IERE-----------RDVIIRESEEVDK 137
Query: 313 DNSYIFGEALMNNILPTYCYKHVSGGDPI-----KILNLKYENLVNYHKKHYHPTNSKFF 367
+ + L YK G I I ++ +L +Y K+Y
Sbjct: 138 MYDEVVFDHLHEI-----TYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLA 192
Query: 368 SYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLH--IHGRHDPLASE 425
G + E + + Y + S L P P + + L
Sbjct: 193 GAGAVDHEKLVQYAQ-KYFGHVPK----SESPVPLGSPRGPLPVFCRGERFIKENTL--- 244
Query: 426 NQSHIAIAYK-CAVMDNFKDVFVL----NILGDLLL-----KGPNAPFYKNLVESGLGLS 475
+HIAIA + + D FV I+G+ +P ++ L+
Sbjct: 245 PTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQN-GSLA 301
Query: 476 FSPVTGYEASIHDT-LFTVGLQGVDSNKF--DEIIGAVNKTIDEVIAEGFDKERVA 528
S + S D+ L+ + + DSN+ I+ + K + + V
Sbjct: 302 NS-YMSFSTSYADSGLWGMYI-VTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVN 355
Score = 40.3 bits (95), Expect = 0.003
Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 53/195 (27%)
Query: 976 LRGVPFLHKDYVALKVLSKFLTTKY------------LLREVREKNG-AYGAGAVVSP-- 1020
L GV + DY + L + A + +
Sbjct: 253 LEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYA 312
Query: 1021 -SGVIQFY---SYRDPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPG 1076
SG+ Y + + + + + K+S +++ AK K
Sbjct: 313 DSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAK-AQLK--------A 363
Query: 1077 SKGMSK--------------FLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDA 1119
+ +S GK +E+ EQ V ++T+DDI A+ L
Sbjct: 364 ALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQ----VDKITKDDIIMWANYRL---- 415
Query: 1120 TEKLSSYVVIGPKSN 1134
K S V +G S
Sbjct: 416 QNKPVSMVALGNTST 430
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 61.1 bits (149), Expect = 1e-09
Identities = 46/354 (12%), Positives = 102/354 (28%), Gaps = 76/354 (21%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSS-Q 252
++ G +H+L S + +TR + ++ + + Y +
Sbjct: 59 NSNNLGTSHLLRLASSLTTKGASSFK-----ITRGIEAVGGKLSVTSTRENMAYTVECLR 113
Query: 253 NHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS 312
+ D M L+ P ++ + + + A
Sbjct: 114 DDVDIL--MEFLLNVTTAP------------EFRRWEVAAL------QPQLRIDKAVALQ 153
Query: 313 D---------NSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTN 363
+ ++ + AL N++ +I + L +Y + H+
Sbjct: 154 NPQAHVIENLHAAAYRNALANSLYCP----------DYRIGKVTPVELHDYVQNHFTSAR 203
Query: 364 SKFFSYGNFNLEDHLSFINTNYLSKI-NPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPL 422
G H L ++ + + R + A K I ++
Sbjct: 204 MALIGLGV----SH------PVLKQVAEQFLNIRGGLGLSGAKA--KYHGGEIREQNGD- 250
Query: 423 ASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNL-------VESGLGLS 475
+ H A+ + A + + + ++L +L GP+ N V G+
Sbjct: 251 ---SLVHAALVAESAAIGS-AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQP 306
Query: 476 FSPVTGYEASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
F V+ + AS D+ LF + ++I A + + V
Sbjct: 307 FD-VSAFNASYSDSGLFGFYT-ISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQ 358
Score = 41.8 bits (99), Expect = 0.001
Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 49/188 (26%)
Query: 976 LRGVPFLHKDYVALKVLSKFL----TTKY-------LLREVREKNG-AYGAGAVVSP--- 1020
+ A VL L K L + V + + A +
Sbjct: 259 AESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSD 318
Query: 1021 SGVIQFYSYRDPYALETLATFDQST-QFLADTKLSVQDLDEAK--------LGVFKEVDA 1071
SG+ FY+ + + + + +A LS D+ AK + V E
Sbjct: 319 SGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSV--ESSE 376
Query: 1072 PIPPGSKGMSK-----FLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKL 1123
+ + G +++Q + V + D+ A ++S +
Sbjct: 377 GF------LDEVGSQALAAGSYTPPSTVLQQ----IDAVADADVINAAKKFVSGRKS--- 423
Query: 1124 SSYVVIGP 1131
G
Sbjct: 424 --MAASGN 429
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 60.8 bits (148), Expect = 2e-09
Identities = 49/349 (14%), Positives = 100/349 (28%), Gaps = 68/349 (19%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMNAMTGPDYTFYPFSSQN 253
+ G THIL+ L+ + R + ++ + + Y S N
Sbjct: 41 GRNLKGCTHILDRLAFKSTEHVEGRA-----MAETLELLGGNYQCTSSRENLMYQASVFN 95
Query: 254 HCDYFNLM-SIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS 312
M + + V P++ + L+ + K E+ +
Sbjct: 96 --QDVGKMLQLMSETVRFPKITE-------QELQEQ-----------KLSAEYEIDEVWM 135
Query: 313 DNSYIFGEALMNNILPTYCYKHVSGGDPI-----KILNLKYENLVNYHKKHYHPTNSKFF 367
+ E L Y + G P+ I ++ L++Y K Y P N+
Sbjct: 136 KPELVLPELLHTAA-----YSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAA 190
Query: 368 SYGNFNLEDHLSFIN--TNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLASE 425
G H + YL H T + + + +
Sbjct: 191 FVGV----PHEKALELTGKYLGDWQS--THPPITKKVAQYTGGESCIPPAPVFGNLP--- 241
Query: 426 NQSHIAIAYK-CAVMDNFKDVFVL----NILG-------DLLLKGPNAPFYKNLVESGLG 473
HI I ++ + D++ L +LG KG + Y +++
Sbjct: 242 ELFHIQIGFEGLPIDH--PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQ-YY 298
Query: 474 LSFSPVTGYEASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEG 521
+ + S D+ +F + L + + + + + A
Sbjct: 299 FVEN-CVAFNHSYSDSGIFGISL-SCIPQAAPQAVEVIAQQMYNTFANK 345
Score = 39.2 bits (92), Expect = 0.008
Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 57/203 (28%)
Query: 976 LRGVPFLHKDYVALKVLS-------KFLTTKY-------LLREVREKNG-AYGAGAVVSP 1020
G+P H D AL L F L V + A
Sbjct: 250 FEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHS 309
Query: 1021 ---SGVIQFYSYRDP----YALETLATFDQSTQFLADTKLSVQDLDEAK----------- 1062
SG+ P A+E +A +T D +L+ ++ AK
Sbjct: 310 YSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNL 369
Query: 1063 ---LGVFKEVDAPIPPGSKGMSKFLYGK---TDEMIEQYRLSVKQVTEDDIRRVADTYLS 1116
L +++ G ++G+ +EMI + ++ + DDI RVA+ +
Sbjct: 370 ESKLVELEDM---------GRQVLMHGRKIPVNEMISK----IEDLKPDDISRVAEMIFT 416
Query: 1117 RDAT-----EKLSSYVVIGPKSN 1134
+ + ++ V+ G + +
Sbjct: 417 GNVNNAGNGKGRATVVMQGDRGS 439
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 51.2 bits (123), Expect = 1e-06
Identities = 43/356 (12%), Positives = 98/356 (27%), Gaps = 87/356 (24%)
Query: 181 SRDDSNNVFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT---FMN 237
SR + + G+ H+L + + L R
Sbjct: 23 SRYATKD--------------GVAHLLNRFNFQNTNTRSALK-----LVRESELLGGTFK 63
Query: 238 AMTGPDYTFYPFSS-QNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSP 296
+ +Y + ++ Y+ ++ D ++ K ++ +
Sbjct: 64 STLDREYITLKATFLKDDLPYY--VNALADVLYKTAFKP------------HELTESV-- 107
Query: 297 IIFKGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPI---KILNLKYENLVN 353
+ A + L ++ G+P+ + + +++ +
Sbjct: 108 ---LPAARYDYAVAEQCPVKSAEDQLYAI-----TFRK-GLGNPLLYDGVERVSLQDIKD 158
Query: 354 YHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQL 413
+ K Y N + D F++ + LS + S EP + +
Sbjct: 159 FADKVYTKENLEVSGENVVE-ADLKRFVDESLLSTLPA----GKSLVSKSEPKFFLGEEN 213
Query: 414 HIHGRHDPLASENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKNLVESGLG 473
+ S AI V + +L + L + G
Sbjct: 214 RVRFIG-------DSVAAIGI--PVNK--ASLAQYEVLANYLTSALSEL---------SG 253
Query: 474 LSFSPVTGYEASIHDT-LFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEGFDKERVA 528
L S D LFT+ ++ DS V+ I +++A+ + ++
Sbjct: 254 LISS---AKLDKFTDGGLFTLFVRDQDSA-------VVSSNIKKIVADLKKGKDLS 299
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo
sapiens} PDB: 2w1o_A
Length = 70
Score = 30.8 bits (70), Expect = 0.34
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 483 EASIHDTLFTVGLQGVDSNKFDEIIGAVN-KTIDEVIAEGFDK 524
I L +VG++ D ++ +++I +N K I++VIA+G K
Sbjct: 21 AKDIKKILDSVGIE-ADDDRLNKVISELNGKNIEDVIAQGIGK 62
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
Query: 539 FDEIKGAVNKTIDEVIAEGFDKERVASV 566
E+ G K I++VIA+G ++ASV
Sbjct: 44 ISELNG---KNIEDVIAQG--IGKLASV 66
>2w7v_A General secretion pathway protein L; transport, type II secretion,
transport protein; 2.30A {Vibrio parahaemolyticus}
Length = 95
Score = 30.3 bits (68), Expect = 0.79
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 894 KLENILQDIQSIGAHVLRKDSMRCALNMSAQSNAPERLESFLQSIPGDFTSQPGQ 948
L L ++ + + D R + + A+S+ + E + F + GQ
Sbjct: 16 ALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAEKFNVEQGQ 70
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Artificial gene}
Length = 134
Score = 31.0 bits (69), Expect = 0.98
Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 610 NWFKKHIQENPTYLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEKDILKDRISQMND 669
N FK +P L++ ++E ++ +++ + +K + EK + K + + + D
Sbjct: 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD 84
Query: 670 QDLNKVYVNGTELRKEQEKEQNIDVLPTLKISDVDDHVERV 710
QD N+ +E +E ++ DD + +
Sbjct: 85 QDQNR--------LEEFSREVRRRGFEVRTVTSPDDFKKSL 117
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Length = 106
Score = 30.3 bits (68), Expect = 1.0
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 483 EASIHDTLFTVGLQGVDSNKFDEIIGAVN-KTIDEVIAEGFDK 524
I L +VG++ ++ K ++ A+ K++DE+I EG +K
Sbjct: 19 ATKIKAILESVGIE-IEDEKVSSVLSALEGKSVDELITEGNEK 60
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair,
nucleotide-binding, DNA-binding, polymorphism, nuclear
protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB:
2wwy_A*
Length = 591
Score = 31.1 bits (71), Expect = 2.8
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 1084 LYGKTDEMIEQYRLSVKQVTEDDIRRV-----ADTYLSRDATEK---LSSYVVIGPKSNN 1135
GK + + + +D+ ++ YL D + SY+ IGPK+N
Sbjct: 472 WMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANL 531
Query: 1136 L 1136
L
Sbjct: 532 L 532
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET:
GTP; 2.50A {Human enterovirus 71} PDB: 3n6l_A* 3n6n_A*
Length = 462
Score = 30.5 bits (68), Expect = 3.7
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 254 HCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFS- 312
DY + F L + ++ +++ + + G S
Sbjct: 231 AFDYSGYDASLSPVWFRALELVLREIGYSEGAISLIEGINHTHHVYRNKTYCVLGGMPSG 290
Query: 313 ------DNSYIFGEALMNNILPTYCYKHVSGGDPI 341
NS ++NNI+ G +
Sbjct: 291 CSGTSIFNS------MINNIIIRALLIKTFKGIDL 319
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 4.0
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 12/34 (35%)
Query: 43 QINYLNNKLKL----SSNILKMLNNPSWGLNRSI 72
+ L LKL S+ P+ + ++
Sbjct: 21 ALKKLQASLKLYADDSA--------PALAIKATM 46
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 29.3 bits (66), Expect = 5.5
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 498 VDSNKFDEIIGAVNKTIDEVIAEGFDKERV--AIGLQGVDSNKFDE-IKGAVN 547
D E + + + + F + V + +G+D K D ++ V
Sbjct: 3 ADKESLIEALKLA-LSTEYNVKRNFT-QSVEIILTFKGIDMKKGDLKLREIVP 53
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 29.2 bits (65), Expect = 7.6
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 612 FKKHIQEN--PTYLQEKVDEYLRNNPHKLIITMSPEKTFDEKLDKVEK 657
++ L+E E + N + KT+ D
Sbjct: 309 YENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSSI 356
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
transport, cysteine uptake; 2.00A {Campylobacter jejuni}
SCOP: c.94.1.1
Length = 292
Score = 28.9 bits (65), Expect = 9.6
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 511 NKTIDEVIAEGFDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGF 558
+ I E +K+ +A ++ D E+K ++ I ++ E F
Sbjct: 212 HPDFKMGIKELGNKDVIAPAVKKGD----KELKEFIDNLIIKLGQEQF 255
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,455,665
Number of extensions: 1078278
Number of successful extensions: 2661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2592
Number of HSP's successfully gapped: 77
Length of query: 1147
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1043
Effective length of database: 3,798,009
Effective search space: 3961323387
Effective search space used: 3961323387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)