RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14715
(1147 letters)
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 180 bits (456), Expect = 2e-51
Identities = 107/249 (42%), Positives = 144/249 (57%), Gaps = 6/249 (2%)
Query: 143 EGAEVEGFLVKNVTPIPEFQMTAIKLQHVKTLAEYFHLSRDDSNNVFAVAFRTPPPDSTG 202
+ AE GF + I E + AI +H KT E +S +D N VF V FRTPP DSTG
Sbjct: 1 DEAEKLGFEKVSEEFISECKSKAILFKHKKTGCEVMSVSNEDENKVFGVVFRTPPKDSTG 60
Query: 203 ITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCDYFNLMS 262
I HIL+H LCGS KYP ++PF+++L S+ TF+NA T PD T YP +S N D++NL+
Sbjct: 61 IPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVD 120
Query: 263 IYLDAVFNPQLKQ--LDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSYIFGE 320
+YLDAVF P+ F QEGW E D + I +KGVVFNEMKG +S I G
Sbjct: 121 VYLDAVFFPKCVDDAHTFQQEGWHYELN---DPSEDISYKGVVFNEMKGVYSQPDNILGR 177
Query: 321 ALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLEDHLSF 380
+ P Y SGGDP I NL +E +H+++YHP+N++ + YG+ + L
Sbjct: 178 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRV 237
Query: 381 INTNYLSKI 389
++ YL
Sbjct: 238 LS-EYLDMF 245
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 258
Score = 174 bits (443), Expect = 9e-50
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 5/248 (2%)
Query: 698 LKISDVDDHVERVVTTDKHILQVPIQLSTQPTNGVTYFRSVVDTSKLSPELKPLVPLFNY 757
L + D+ V T I V + TN + Y V D L EL PLVPLF
Sbjct: 1 LNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQ 60
Query: 758 VINQMRTKNYDFREMDQLIHMSTGGISFNSHLGESCSTPNGFEEAILVSSHCLEHNNDKM 817
+ +M TK+ F +++QLI TGGIS L S + I+V + D +
Sbjct: 61 SLLEMGTKDLTFVQLNQLIGRKTGGISV-YPLTSSVRGKDEPCSKIIVRGKSMAGRADDL 119
Query: 818 FDVLSELFNNVQLTDLNRFTTLVNTLSSELINGISGNGHRYAMSIASSLVDPVSEQKEIY 877
F++++ L VQ TD RF V+ + + N + G+GH A + ++++ E
Sbjct: 120 FNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQM 179
Query: 878 SGLSFVSKIKEIAQSPK--LENILQDIQSIGAHVLRKDSMRCALNMSAQS--NAPERLES 933
GLS++ + + + E I ++ I +L ++ + +S N + +
Sbjct: 180 GGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAK 239
Query: 934 FLQSIPGD 941
FL +P +
Sbjct: 240 FLDLLPEN 247
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 173 bits (439), Expect = 4e-49
Identities = 59/302 (19%), Positives = 120/302 (39%), Gaps = 44/302 (14%)
Query: 404 EPAWDKPRQLHIHGRHDPLAS-ENQSHIAIAYKCA-VMDNFKDVFVLNILGDLLLKGPNA 461
+ + +P +L + + + + + + + + L L L+L P +
Sbjct: 2 QKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPAS 61
Query: 462 PFYKNLVESGLGLSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIAEG 521
P K L+ESGLG + +G + F
Sbjct: 62 PLRKILLESGLGEALVS-SGLSDELLQPQFG----------------------------- 91
Query: 522 FDKERVAIGLQGVDSNKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELSLKHQSSN- 580
IGL+GV +++ + T+ ++ EGFD + V + ++++E SL+ ++
Sbjct: 92 -------IGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGS 144
Query: 581 --FGLNLLFWLVPFMNHDCDVIHLLHINDRLNWFKKHIQE--NPTYLQEKVDEYLRNNPH 636
GL+L+ + +D D L + L K I E + +++ + NN H
Sbjct: 145 FPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSH 204
Query: 637 KLIITMSPEKTFDEKLDKVEKDILKDRISQMNDQDLNKVYVNGTELRKEQEKEQNIDVLP 696
++ I M P+ + + EK+IL+ + M ++DL ++ EL+ +QE + L
Sbjct: 205 RVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEALR 264
Query: 697 TL 698
+
Sbjct: 265 CV 266
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 196
Score = 132 bits (333), Expect = 8e-36
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 964 VLPFPVNFTAKSLRGVPFLHKDYVALKVLSKFLTTKYLLREVREKNGAYGAGAVVSP-SG 1022
V+P VN+ K+ ++ + V+SK ++ +L VR GAYG SG
Sbjct: 9 VIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSG 68
Query: 1023 VIQFYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPGSKGMSK 1082
V + SYRDP L+TL +D + FL + + L +A +G +VD+ P +KG S
Sbjct: 69 VFSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSS 128
Query: 1083 F---LYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134
L G TDE ++ R + + D + A V + +
Sbjct: 129 LLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAID---VVRDKGVAVAVASAED 180
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 59.7 bits (143), Expect = 2e-10
Identities = 25/204 (12%), Positives = 58/204 (28%), Gaps = 22/204 (10%)
Query: 188 VFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFY 247
R + G + +EHL+ G+ P ++ + +NA + ++T Y
Sbjct: 39 WIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGA--HLNAYSTREHTAY 96
Query: 248 PFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEM 307
+ + ++ L + + L + + + V+ E+
Sbjct: 97 YIKALSKD-------------LPKAVELLADIVQNCSL------EDSQIEKERDVILQEL 137
Query: 308 KGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFF 367
+ + + L G + L +L Y +HY
Sbjct: 138 QENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLA 197
Query: 368 SYGNFNLEDHLSFINTNYLSKINP 391
+ G L + S ++
Sbjct: 198 AAGGLEHRQLLDLAQ-KHFSGLSG 220
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 57.0 bits (136), Expect = 2e-09
Identities = 23/204 (11%), Positives = 56/204 (27%), Gaps = 25/204 (12%)
Query: 188 VFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFY 247
VF P + G++++ ++ + +++ D+ Y
Sbjct: 28 VFGSGAANENPYNNGVSNLWKN---------IFLSKENSAVAAKEGLALSSNISRDFQSY 78
Query: 248 PFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEM 307
S + + + L + + V+
Sbjct: 79 IVS-SLPGSTDKSLDFLNQSFIQQKANLLS--SSNFEATKKS------------VLKQVQ 123
Query: 308 KGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFF 367
+D+ E L + + G + NL +L ++ H+ +N+
Sbjct: 124 DFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVV 183
Query: 368 SYGNFNLEDHLSFINTNYLSKINP 391
GN ED ++ I + +
Sbjct: 184 GTGNIKHEDLVNSIE-SKNLSLQT 206
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 56.3 bits (134), Expect = 4e-09
Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 22/202 (10%)
Query: 188 VFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFY 247
R + G H LEH + + + + + + +Y
Sbjct: 30 FVDAGSRAENVKNNGTAHFLEH-LAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYY 88
Query: 248 PFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEM 307
S Q + L + L++ + V+ E
Sbjct: 89 AKSLQED--------------IPKAVDILSDILTKSVLDNSA------IERERDVIIRES 128
Query: 308 KGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFF 367
+ + + L G I ++ +L +Y K+Y
Sbjct: 129 EEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLA 188
Query: 368 SYGNFNLEDHLSFINTNYLSKI 389
G + E + + Y +
Sbjct: 189 GAGAVDHEKLVQYAQ-KYFGHV 209
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 52.1 bits (124), Expect = 8e-08
Identities = 25/182 (13%), Positives = 51/182 (28%), Gaps = 27/182 (14%)
Query: 976 LRGVPFLHKDYVALKVLSKFL------------TTKYLLREVREKNG-AYGAGAVVSPS- 1021
L GV + DY + + L + A + +
Sbjct: 27 LEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYA 86
Query: 1022 -----GVIQFYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEA----KLGVFKEVDAP 1072
G+ + + + + + K+S +++ A K + +D
Sbjct: 87 DSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGS 146
Query: 1073 IPPGSKGMSKFLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPK 1132
+ + E+ V ++T+DDI A+ L S V +G
Sbjct: 147 TAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPV----SMVALGNT 202
Query: 1133 SN 1134
S
Sbjct: 203 ST 204
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 50.8 bits (120), Expect = 2e-07
Identities = 20/215 (9%), Positives = 54/215 (25%), Gaps = 32/215 (14%)
Query: 181 SRDDSNNVFAVAF------RTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMAT 234
+RD + +A R D G+ H+L + + + +
Sbjct: 5 ARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRES--ELLGG 60
Query: 235 FMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQN 294
+ +Y + + + ++ + + E +
Sbjct: 61 TFKSTLDREYITLKATFLKDDLPYYVNALA----------DVLYKTAFKPHELTESVLPA 110
Query: 295 SPIIFKGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNY 354
E + I + D ++ + +++ ++
Sbjct: 111 ---------ARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLLYDGVE--RVSLQDIKDF 159
Query: 355 HKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKI 389
K Y N + D F++ + LS +
Sbjct: 160 ADKVYTKENLEVSGENVVE-ADLKRFVDESLLSTL 193
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 49.9 bits (118), Expect = 4e-07
Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 26/181 (14%)
Query: 976 LRGVPFLHKDYVALKVLSKFL------------TTKYLLREVREKNGAYGAGAVVSPSGV 1023
+ G P +Y K+ ++ LL ++E
Sbjct: 26 VEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKD 85
Query: 1024 IQFY----SYRDPYALETLATFDQSTQFLADTKLSVQDLDEAK------LGVFKEVDAPI 1073
+ + R+ ++ L F ++ +++ AK LG E P+
Sbjct: 86 SGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPV 145
Query: 1074 PPGSKGMSKFLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKS 1133
+ ++ L + + + + +T D++ A L + G
Sbjct: 146 NDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQD----IAIAGTGQIE 201
Query: 1134 N 1134
Sbjct: 202 G 202
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 49.0 bits (115), Expect = 1e-06
Identities = 39/202 (19%), Positives = 62/202 (30%), Gaps = 17/202 (8%)
Query: 188 VFAVAFRTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFY 247
V V P G+ H LEH+SL GS KYP D + NA T P T +
Sbjct: 48 VVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLA-EYLKMHGGSHNASTAPYRTAF 106
Query: 248 PFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEM 307
+N + DA+ P L + +E + E
Sbjct: 107 YLEVENDA-LPGAVDRLADAIAEPLLDKKYAERERNAVNAEL--------------TMAR 151
Query: 308 KGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFF 367
+ + E + + K N + L ++H+K+Y K
Sbjct: 152 TRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAV 211
Query: 368 SYGNFNLEDHLSFINTNYLSKI 389
Y N L + + ++
Sbjct: 212 IYSNKPLPELAKMAA-DTFGRV 232
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 45.5 bits (106), Expect = 1e-05
Identities = 31/216 (14%), Positives = 54/216 (25%), Gaps = 29/216 (13%)
Query: 180 LSRDDSNNVFAVAF------RTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMA 233
+ + + A+ R + G THIL+ L+ + R + +
Sbjct: 18 ATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETL--ELLG 75
Query: 234 TFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQ 293
+ + Y S N L + F +Q Q+
Sbjct: 76 GNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA--------- 126
Query: 294 NSPIIFKGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVN 353
E+ + + E L I ++ L++
Sbjct: 127 ----------EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLD 176
Query: 354 YHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLSKI 389
Y K Y P N+ G E L YL
Sbjct: 177 YRNKFYTPENTVAAFVG-VPHEKALELTG-KYLGDW 210
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 209
Score = 45.2 bits (106), Expect = 1e-05
Identities = 20/177 (11%), Positives = 37/177 (20%), Gaps = 23/177 (12%)
Query: 977 RGVPFLHKDYVALKVLSKFLT-----------TKYLLREVREKNG-AYGAGAVVSPSGVI 1024
G + H D VAL+V + + L + N
Sbjct: 25 EGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADT 84
Query: 1025 QFYSYRDPYALETLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPGSKGMSK-- 1082
++ Q + E G +A +
Sbjct: 85 GLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCE 144
Query: 1083 -----FLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134
L + ++ + +V +R V Y + GP
Sbjct: 145 DIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQC----PAVAGFGPIEQ 197
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 44.6 bits (104), Expect = 3e-05
Identities = 20/214 (9%), Positives = 49/214 (22%), Gaps = 30/214 (14%)
Query: 180 LSRDDSNNVFAVAF------RTPPPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMA 233
S ++ + R ++ G +H+L S + +
Sbjct: 20 ASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGK 79
Query: 234 TFMNAMTGPDYTFYPFSSQNHCDYFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQ 293
+ + D LM L+ P+ ++ + +L +
Sbjct: 80 LSVTSTRENMAYTV---ECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVAL 136
Query: 294 NSPIIFKGVVFNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVN 353
N ++ + +I + L +
Sbjct: 137 Q-------------------NPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHD 177
Query: 354 YHKKHYHPTNSKFFSYGNFNLEDHLSFINTNYLS 387
Y + H+ G L + +L+
Sbjct: 178 YVQNHFTSARMALIGLGVS--HPVLKQVAEQFLN 209
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 204
Score = 43.7 bits (102), Expect = 3e-05
Identities = 19/178 (10%), Positives = 40/178 (22%), Gaps = 25/178 (14%)
Query: 977 RGVPFLHKDYVALKVLSKFL-----------TTKYLLREVREKNG-AYGAGAVVSPSGVI 1024
+ A VL L T L + V + + A +
Sbjct: 25 ESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDS 84
Query: 1025 QFYSYRDPYALE--------TLATFDQSTQFLADTKLSVQDLDEAKLGVFKEVDAPIPPG 1076
+ + Q ++ K G V++
Sbjct: 85 GLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFL 144
Query: 1077 SKGMSKFLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRDATEKLSSYVVIGPKSN 1134
+ S+ L + + V + D+ A ++S + G +
Sbjct: 145 DEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKS-----MAASGNLGH 197
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 237
Score = 42.2 bits (98), Expect = 1e-04
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 30/192 (15%)
Query: 977 RGVPFLHKDYVALKVLSKFL--------------TTKYLLREVREKNG-AYGAGAVVSPS 1021
G+P H D AL L L L V + A
Sbjct: 31 EGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSY 90
Query: 1022 GVIQFYSYRDPYALETLATFDQSTQ-------FLADTKLSVQDLDEA----KLGVFKEVD 1070
+ + + D +L+ ++ A K + ++
Sbjct: 91 SDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLE 150
Query: 1071 APIPPGSKGMSKFLYGKTDEMIEQYRLSVKQVTEDDIRRVADTYLSRD----ATEKLSSY 1126
+ + + L + + ++ + DDI RVA+ + + K +
Sbjct: 151 SKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRAT 210
Query: 1127 VVIGPKSNNLGD 1138
VV+ + GD
Sbjct: 211 VVMQGDRGSFGD 222
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 40.4 bits (93), Expect = 6e-04
Identities = 12/187 (6%), Positives = 39/187 (20%), Gaps = 29/187 (15%)
Query: 197 PPDSTGITHILEHLSLCGSVKYPCRDPFMKMLTRSMATFMNAMTGPDYTFYPFSSQNHCD 256
+ + + ++L+ + + + ++
Sbjct: 59 SARNQVMFALNDYLAGLALDQLSNQ-------ASVGGISFSTNANNGLMVN--ANGYTQR 109
Query: 257 YFNLMSIYLDAVFNPQLKQLDFMQEGWRLEHEDIKDQNSPIIFKGVVFNEMKGAFSDNSY 316
L L+ F+ + Q + + ++ +M S
Sbjct: 110 LPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSR 169
Query: 317 IFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTNSKFFSYGNFNLED 376
++ +I + ++ Y +F GN
Sbjct: 170 DERRKILPSI--------------------TLKEVLAYRDALKSGARPEFMVIGNMTEAQ 209
Query: 377 HLSFINT 383
+
Sbjct: 210 ATTLARD 216
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum
[TaxId: 1515]}
Length = 112
Score = 28.5 bits (64), Expect = 1.8
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 534 VDSNKFDEIKGAVNKTIDEVIAE-GFDKERVASVLHS 569
V N DEI K + E+ + G +++ + S++ +
Sbjct: 10 VSDNTADEIVAETQKLLKEMAEKNGLEEDDIISIIFT 46
>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 153
Score = 28.5 bits (63), Expect = 2.5
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 171 VKTLAEYFHLSRDDSNNVFAVAFRTPPPD--STGITHILEHLSLCGSVKYPCRDPFMKML 228
+ AE F LS +D PP STG+ ++L ++ + + + L
Sbjct: 6 CRWFAEAFSLSAND--------LSGHPPRVVSTGLPYLLLPVTAEALGRARQVNDLQEAL 57
Query: 229 TRSMATFMNAMTGPDYTFYPF 249
+ A F+ + +
Sbjct: 58 DKLGAAFVYLLDVDGREGRTW 78
>d1dbfa_ d.79.1.2 (A:) Chorismate mutase {Bacillus subtilis [TaxId:
1423]}
Length = 127
Score = 27.7 bits (62), Expect = 3.6
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 534 VDSNKFDEIKGAVNKTIDEVIAE-GFDKERVASVLHS 569
V+ + +EI + ++++I E E V +L S
Sbjct: 12 VERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLS 48
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide),
N-terminal domain {Bacillus thuringiensis tenebrionis,
CRYIIIA (BT13) [TaxId: 1444]}
Length = 229
Score = 28.7 bits (64), Expect = 3.8
Identities = 25/188 (13%), Positives = 57/188 (30%), Gaps = 33/188 (17%)
Query: 465 KNLVESGLG-----LSFSPVTGYEASIHDTLFTVGLQGVDSNKFDEIIGAVNKTIDEVIA 519
K++++ G+ L A + + + + + V +D+ IA
Sbjct: 3 KDVIQKGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQKIA 62
Query: 520 EGFDKERVAIGLQGVDS------NKFDEIKGAVNKTIDEVIAEGFDKERVASVLHSLELS 573
+ + K + LQG+ + + + + + + R+ + E
Sbjct: 63 D-YAKNKALAELQGLQNNVEDYVSALSSWQKNPVSSRNPH-----SQGRIRELFSQAESH 116
Query: 574 LKH-----QSSNFGLNLLFWLVPFMNHDCDVIHLLHIND------RLNWFKKHIQENPTY 622
++ S + + L N HL + D + K+ I E
Sbjct: 117 FRNSMPSFAISGYEVLFLTTYAQAAN-----THLFLLKDAQIYGEEWGYEKEDIAEFYKR 171
Query: 623 LQEKVDEY 630
+ EY
Sbjct: 172 QLKLTQEY 179
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 28.6 bits (63), Expect = 4.5
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 10/163 (6%)
Query: 304 FNEMKGAFSDNSYIFGEALMNNILPTYCYKHVSGGDPIKILNLKYENLVNYHKKHYHPTN 363
+N GA D I + + +IL + + +
Sbjct: 48 WNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFH 107
Query: 364 SKFFSYGNFNLEDHLSFINTNYLSKINPYQHHRSSTAVLPEPAWDKPRQLHIHGRHDPLA 423
+ + F+ + + ++ ++ L + ++ I G +
Sbjct: 108 TTVTAA-AFDEATNT-WTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVAL 165
Query: 424 SENQSHIAIAYKCAVMDNFKDVFVLNILGDLLLKGPNAPFYKN 466
E + Y F ++F + GP +P +
Sbjct: 166 KEKWAAGPRTYLGLSTAGFPNLFFIA--------GPGSPSALS 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,255,521
Number of extensions: 206171
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 26
Length of query: 1147
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1052
Effective length of database: 1,103,246
Effective search space: 1160614792
Effective search space used: 1160614792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.0 bits)