BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14719
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus
           Star-Gsg Quaking Protein
          Length = 140

 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 95/106 (89%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 28  LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLA 106
           L RAVEEV+KLLVP AEGED LKK +LMELAI+NGTYRD N K  A
Sbjct: 88  LKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPA 133



 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 44/47 (93%)

Query: 114 EEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
           EE NRGKPNWEHL+E+LHVLI+VED +NRAELKL RAVEEV+KLLVP
Sbjct: 55  EEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP 101


>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site
           Rna By Splicing Factor 1
          Length = 131

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 16/108 (14%)

Query: 2   TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHL---SEELHVLISVEDTENRAE 58
           T K +E E   KIM+RGKGS++     E   G+ + + L    E LH L++    EN   
Sbjct: 34  TLKNIEKECNAKIMIRGKGSVK-----EGKVGRKDGQMLPGEDEPLHALVTANTMEN--- 85

Query: 59  LKLARAVEEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
             + +AVE+++ +L   +   E +++L+K QL ELA +NGT R+++ +
Sbjct: 86  --VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNR 131


>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
 pdb|3BH7|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To
           Gdp-Alf4
          Length = 352

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 33  GKPNWEHLSEELHV--LISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMEL 90
           G+ NW  L E+  V   + +  TE   ELK  R   E  + +VP + G+ +    +   +
Sbjct: 184 GELNWSLLPEDAVVQDYVPIPTTE---ELKAVRVSTEANRSIVPISRGQRQKSSDESCLV 240

Query: 91  AIINGTYRDNNAKVL 105
            +  G Y   NA+ L
Sbjct: 241 VLFAGDYTIANARKL 255


>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa
           Protein 2 (Rp2)
          Length = 350

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 33  GKPNWEHLSEELHV--LISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMEL 90
           G+ NW  L E+  V   + +  TE   ELK  R   E  + +VP + G+ +    +   +
Sbjct: 182 GELNWSLLPEDAVVQDYVPIPTTE---ELKAVRVSTEANRSIVPISRGQRQKSSDESCLV 238

Query: 91  AIINGTYRDNNAKVL 105
            +  G Y   NA+ L
Sbjct: 239 VLFAGDYTIANARKL 253


>pdb|4G7F|A Chain A, Crystal Structure Of Enolase From Trypanosoma Cruzi
          Length = 429

 Score = 27.7 bits (60), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 41  SEELHVLISVEDTENRAELK--LARAVEEVQKLLVPQAEGEDELKKRQLMELA-IINGTY 97
           S  +H    + D + R  L      AV+ V  +L P   G+DEL++  L +L   ++GT 
Sbjct: 40  STGIHEACELRDDDKRRYLGKGCLNAVKNVNDVLAPALVGKDELQQSTLDKLMRDLDGT- 98

Query: 98  RDNNAKVLAAAVFVFS------EEANRGKPNWEHLSE 128
             N +K+ A A+   S        A +G P + +L+E
Sbjct: 99  -PNKSKLGANAILGCSMAISKAAAARKGVPLYRYLAE 134


>pdb|2YQR|A Chain A, Solution Structure Of The Kh Domain In Kiaa0907 Protein
          Length = 119

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 4  KQLELETGCKIMVRGKGS 21
          + +++ETG K+ +RGKGS
Sbjct: 42 QHIQIETGAKVFLRGKGS 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,318,162
Number of Sequences: 62578
Number of extensions: 163553
Number of successful extensions: 328
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 24
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)