Query psy14719
Match_columns 160
No_of_seqs 201 out of 407
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:55:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 9E-38 3.1E-42 240.9 5.5 107 1-107 28-134 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 8.1E-29 2.8E-33 188.7 7.4 95 1-102 33-130 (131)
3 2bl5_A MGC83862 protein, quaki 99.6 6.5E-17 2.2E-21 124.4 1.3 83 64-160 15-101 (140)
4 2yqr_A KIAA0907 protein; struc 99.6 1.7E-15 5.7E-20 113.6 6.3 73 1-86 39-111 (119)
5 1k1g_A SF1-BO isoform; splicin 98.4 1.9E-07 6.6E-12 70.5 3.7 75 64-159 20-98 (131)
6 2opv_A KHSRP protein; KH domai 96.8 0.0032 1.1E-07 43.1 6.2 49 2-72 35-83 (85)
7 1x4m_A FAR upstream element bi 96.3 0.0093 3.2E-07 41.6 6.2 52 2-75 36-87 (94)
8 1dtj_A RNA-binding neurooncolo 95.9 0.014 4.9E-07 38.7 5.3 51 2-73 24-74 (76)
9 2yqr_A KIAA0907 protein; struc 95.8 0.0038 1.3E-07 46.2 2.0 73 64-159 26-98 (119)
10 2hh2_A KH-type splicing regula 95.6 0.019 6.5E-07 41.1 5.2 52 2-74 28-79 (107)
11 2hh3_A KH-type splicing regula 95.2 0.03 1E-06 40.2 5.2 48 2-73 32-79 (106)
12 1ec6_A RNA-binding protein NOV 95.1 0.032 1.1E-06 38.1 4.8 52 2-74 24-75 (87)
13 1x4n_A FAR upstream element bi 94.7 0.054 1.8E-06 37.5 5.2 49 2-74 36-84 (92)
14 2dgr_A Ring finger and KH doma 94.6 0.062 2.1E-06 36.9 5.2 44 2-72 31-74 (83)
15 1zzk_A Heterogeneous nuclear r 94.3 0.092 3.2E-06 35.4 5.6 48 2-73 28-75 (82)
16 1we8_A Tudor and KH domain con 94.2 0.082 2.8E-06 37.4 5.3 51 2-74 36-86 (104)
17 2p2r_A Poly(RC)-binding protei 94.1 0.11 3.6E-06 34.5 5.4 48 2-73 26-73 (76)
18 1wvn_A Poly(RC)-binding protei 94.0 0.087 3E-06 35.5 4.9 49 2-74 27-75 (82)
19 1j5k_A Heterogeneous nuclear r 93.8 0.13 4.4E-06 35.3 5.5 48 2-73 35-82 (89)
20 2cte_A Vigilin; K homology typ 93.4 0.084 2.9E-06 36.7 4.0 45 2-72 38-82 (94)
21 2axy_A Poly(RC)-binding protei 93.3 0.18 6.1E-06 33.3 5.4 46 2-73 26-71 (73)
22 1vig_A Vigilin; RNA-binding pr 92.6 0.25 8.6E-06 32.5 5.3 45 2-72 26-70 (71)
23 2ctl_A Vigilin; K homology typ 92.4 0.2 6.9E-06 35.1 4.9 48 2-72 38-85 (97)
24 3krm_A Insulin-like growth fac 92.2 0.25 8.5E-06 36.7 5.5 51 2-74 106-156 (163)
25 2ctm_A Vigilin; K homology typ 91.9 0.27 9.2E-06 34.3 5.0 46 2-72 38-83 (95)
26 2ctk_A Vigilin; K homology typ 91.5 0.28 9.6E-06 34.8 4.8 46 2-73 38-83 (104)
27 2jvz_A KH type-splicing, FAR u 88.9 0.62 2.1E-05 34.3 5.0 48 2-73 112-159 (164)
28 2jvz_A KH type-splicing, FAR u 88.6 0.9 3.1E-05 33.4 5.7 52 2-75 23-74 (164)
29 1j4w_A FUSE binding protein; s 87.7 1 3.6E-05 33.7 5.7 48 2-73 24-71 (174)
30 2ctj_A Vigilin; K homology typ 86.8 0.83 2.8E-05 31.9 4.3 46 2-73 38-84 (95)
31 2anr_A Neuro-oncological ventr 85.7 0.97 3.3E-05 34.0 4.5 53 2-75 27-79 (178)
32 2anr_A Neuro-oncological ventr 83.2 1.2 4.2E-05 33.4 4.1 52 2-75 125-176 (178)
33 1tua_A Hypothetical protein AP 80.7 4.8 0.00016 31.6 6.8 17 2-18 119-135 (191)
34 3krm_A Insulin-like growth fac 79.0 4.1 0.00014 29.9 5.7 18 2-19 24-41 (163)
35 2jzx_A Poly(RC)-binding protei 78.6 3.3 0.00011 30.4 5.0 18 2-19 26-43 (160)
36 2e3u_A PH-DIM2P, hypothetical 78.4 2.9 0.0001 33.4 5.0 42 2-74 150-191 (219)
37 2cpq_A FragIle X mental retard 73.4 4.2 0.00014 28.4 4.1 42 2-71 36-78 (91)
38 2qnd_A FMR1 protein; KH domain 49.6 31 0.0011 25.2 5.3 51 2-72 88-140 (144)
39 3isp_A HTH-type transcriptiona 47.2 8 0.00027 29.7 1.8 20 2-21 40-59 (303)
40 2e3u_A PH-DIM2P, hypothetical 46.2 33 0.0011 27.1 5.3 43 2-72 55-101 (219)
41 3hhg_A Transcriptional regulat 38.7 13 0.00044 28.3 1.7 23 2-24 37-59 (306)
42 3szp_A Transcriptional regulat 36.5 11 0.00039 28.2 1.1 22 2-23 35-56 (291)
43 3fzv_A Probable transcriptiona 34.9 9.1 0.00031 29.2 0.3 21 2-22 38-60 (306)
44 1ixc_A CBNR, LYSR-type regulat 32.0 14 0.00046 28.0 0.8 23 2-24 35-57 (294)
45 3k5i_A Phosphoribosyl-aminoimi 31.7 52 0.0018 27.5 4.5 24 45-69 376-399 (403)
46 2esn_A Probable transcriptiona 31.6 14 0.00049 28.2 0.9 22 2-23 44-65 (310)
47 3fxq_A LYSR type regulator of 30.3 20 0.00068 27.5 1.6 23 2-24 36-58 (305)
48 3mz1_A Putative transcriptiona 29.3 11 0.00039 28.2 0.0 22 2-23 32-53 (300)
49 2kie_A Inositol polyphosphate 27.8 18 0.00063 26.5 0.9 12 8-19 83-94 (124)
50 2h9b_A HTH-type transcriptiona 25.9 14 0.00049 28.6 0.0 22 2-23 35-56 (312)
51 4aid_A Polyribonucleotide nucl 25.6 17 0.00058 34.0 0.4 43 2-73 591-633 (726)
52 1uth_A LYSR-type regulatory pr 24.4 16 0.00054 28.4 0.0 23 2-24 48-70 (315)
53 4e4t_A Phosphoribosylaminoimid 23.8 92 0.0031 26.2 4.7 44 9-69 371-415 (419)
54 2h98_A HTH-type transcriptiona 23.7 17 0.00057 28.5 0.0 23 2-24 35-57 (313)
55 2ijl_A AGR_C_4647P, molybdenum 20.7 42 0.0014 24.5 1.7 18 3-20 59-76 (135)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=9e-38 Score=240.92 Aligned_cols=107 Identities=81% Similarity=1.164 Sum_probs=102.2
Q ss_pred CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719 1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED 80 (160)
Q Consensus 1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n 80 (160)
+|+|+||++|||||+||||||+|++++++.++|+|+|+|++|||||+|+|++++++|+++|++|+++|+++|.|+++++|
T Consensus 28 ~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~p~~e~~d 107 (140)
T 2bl5_A 28 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGED 107 (140)
T ss_dssp HHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSSCCSSSSS
T ss_pred chHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCCCCCcchh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcccCCCccchhh
Q psy14719 81 ELKKRQLMELAIINGTYRDNNAKVLAA 107 (160)
Q Consensus 81 elK~~QL~ELA~lNGtlRd~~~~~~~~ 107 (160)
++|+.||+|||++|||||++....++.
T Consensus 108 e~K~~QL~eLA~lNGt~r~~~~~~~~~ 134 (140)
T 2bl5_A 108 SLKKMKLMELAILNGTYRDANLKSPAL 134 (140)
T ss_dssp HHHHHHHTGGGSSSTTTSGGGGSCTTC
T ss_pred HHHHHHHHHHHHhcCCcCCCcccchhh
Confidence 999999999999999999998765554
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.95 E-value=8.1e-29 Score=188.67 Aligned_cols=95 Identities=37% Similarity=0.588 Sum_probs=81.0
Q ss_pred CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc---CCc
Q psy14719 1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP---QAE 77 (160)
Q Consensus 1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P---~~e 77 (160)
+|+|+||++|||||.|||+||+|+++++ ...|. .|.|+++||||+|+|++.+ ++++|+++|+.+|.+ +|+
T Consensus 33 ~tiK~Iq~eTG~kI~IrgkgS~~~~~~~-~~~~~-~~~~~~e~lhV~I~a~~~e-----~~~~A~~~I~~ll~~~~~~p~ 105 (131)
T 1k1g_A 33 NTLKNIEKECNAKIMIRGKGSVKEGKVG-RKDGQ-MLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQGIETPE 105 (131)
T ss_dssp HHHHHHHHHSCCEEEEEESTTSSSSSSS-SCCCC-CSCCSSCCEEEEEEESSHH-----HHHHHHHHHHHHHTTTTSCCT
T ss_pred HHHHHHHHHHCCeEEecCCccccccccc-ccccc-cccccCCCeEEEEEECCHH-----HHHHHHHHHHHHHhccCCCCc
Confidence 3899999999999999999999998765 22344 4788999999999998876 699999999999964 789
Q ss_pred cchHHHHHHHHHHHHHhCcccCCCc
Q psy14719 78 GEDELKKRQLMELAIINGTYRDNNA 102 (160)
Q Consensus 78 ~~nelK~~QL~ELA~lNGtlRd~~~ 102 (160)
++|++|+.||+|||++|||||+++.
T Consensus 106 ~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 106 DQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp TSSGGGGGGGHHHHHHHTCCC----
T ss_pred cHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 9999999999999999999999753
No 3
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.61 E-value=6.5e-17 Score=124.43 Aligned_cols=83 Identities=55% Similarity=0.810 Sum_probs=70.9
Q ss_pred HHHHHhhhcccCCccchHHHHHHHHHHH---HH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719 64 AVEEVQKLLVPQAEGEDELKKRQLMELA---II-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT 139 (160)
Q Consensus 64 Av~~I~klL~P~~e~~nelK~~QL~ELA---~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~ 139 (160)
.+++|..+|+|-+ +.+|+.|-.--+ +. .||.++. ++|+.++|+|+|+|+++||||+|++.++
T Consensus 15 ~~NfiG~IiGPrG---~t~K~ie~eTg~kI~IrGkGS~kd~-----------~~e~~~~g~~~~~~~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 15 DFNFVGRILGPRG---LTAKQLEAETGCKIMVRGKGSMRDK-----------KKEEQNRGKPNWEHLNEDLHVLITVEDA 80 (140)
T ss_dssp SSCHHHHHTTTTH---HHHHHHHHHHSEEEEEESTTSSCCH-----------HHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred CCCeeeEEECCCc---chHHHHHHHHCCeEEEecCCCcccc-----------cccccccCCCCccccCCCcEEEEEecCc
Confidence 4689999999988 888887754332 22 5677765 3577889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q psy14719 140 ENRAELKLARAVEEVQKLLVP 160 (160)
Q Consensus 140 ~~~~~~~l~~a~~~~~~~l~p 160 (160)
+++|+.+|++|+++|+++|+|
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999987
No 4
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=113.59 Aligned_cols=73 Identities=25% Similarity=0.273 Sum_probs=61.4
Q ss_pred CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719 1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED 80 (160)
Q Consensus 1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n 80 (160)
.|+|+||++|||||.|||+||++.... .-.+++|||||+|++.+.+ .+++|+++|+.|+.++.+..+
T Consensus 39 ~tiK~I~~eTG~kI~I~G~gS~~~e~~--------~~~e~~e~l~V~I~a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~ 105 (119)
T 2yqr_A 39 SYLQHIQIETGAKVFLRGKGSGCIEPA--------SGREAFEPMYIYISHPKPE-----GLAAAKKLCENLLQTVHAEYS 105 (119)
T ss_dssp HHHHHHHHHHCCEEEEESBTTTCCCTT--------TSSCCSSBCEEEEEESSHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCEEEEecCCccccccc--------cccccCCCcEEEEEeCCHH-----HHHHHHHHHHHHhhchHHHHH
Confidence 379999999999999999999973221 1235889999999998877 699999999999999887778
Q ss_pred HHHHHH
Q psy14719 81 ELKKRQ 86 (160)
Q Consensus 81 elK~~Q 86 (160)
.+|++|
T Consensus 106 ~~~~q~ 111 (119)
T 2yqr_A 106 RFVNQI 111 (119)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887755
No 5
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=1.9e-07 Score=70.51 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=55.6
Q ss_pred HHHHHhhhcccCCccchHHHHHHHHHHH---HH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719 64 AVEEVQKLLVPQAEGEDELKKRQLMELA---II-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT 139 (160)
Q Consensus 64 Av~~I~klL~P~~e~~nelK~~QL~ELA---~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~ 139 (160)
.+++|..+++|-+ +.+|+.|-.--+ +. .|+.++... +...|. .|+|+++||||+|++.++
T Consensus 20 ~~n~iG~IIGP~G---~tiK~Iq~eTG~kI~IrgkgS~~~~~~------------~~~~~~-~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 20 EINFVGLLIGPRG---NTLKNIEKECNAKIMIRGKGSVKEGKV------------GRKDGQ-MLPGEDEPLHALVTANTM 83 (131)
T ss_dssp SHHHHHHHHCSSS---HHHHHHHHHSCCEEEEEESTTSSSSSS------------SSCCCC-CSCCSSCCEEEEEEESSH
T ss_pred CcceeeeEECCCc---HHHHHHHHHHCCeEEecCCcccccccc------------cccccc-cccccCCCeEEEEEECCH
Confidence 5789999999988 888877753222 22 567766421 133454 599999999999999765
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q psy14719 140 ENRAELKLARAVEEVQKLLV 159 (160)
Q Consensus 140 ~~~~~~~l~~a~~~~~~~l~ 159 (160)
.++++|++.|+++|.
T Consensus 84 -----e~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 84 -----ENVKKAVEQIRNILK 98 (131)
T ss_dssp -----HHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHh
Confidence 468999999999983
No 6
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=96.79 E-value=0.0032 Score=43.12 Aligned_cols=49 Identities=31% Similarity=0.349 Sum_probs=36.9
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.|+|+++|||+|.|...|+.. .+.+-.|.|++ +++ .+.+|.+.|..++
T Consensus 35 ~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~~-----~v~~A~~~I~~i~ 83 (85)
T 2opv_A 35 TIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY-----KVQQACEMVMDIL 83 (85)
T ss_dssp HHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CHH-----HHHHHHHHHHHHh
Confidence 6899999999999998755421 12345799998 565 5788888887765
No 7
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=96.32 E-value=0.0093 Score=41.64 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=38.6
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ 75 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~ 75 (160)
|.|+|+++|||+|.|-..|... ...+-.|.|++ +++ .+.+|..+|..++...
T Consensus 36 ~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~~~-----~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 36 TIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-DPY-----KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp HHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-CTT-----THHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-CHH-----HHHHHHHHHHHHHhcc
Confidence 7899999999999997643211 12345788998 555 4888999998888654
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=95.93 E-value=0.014 Score=38.65 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=36.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|...+... |+ ..+-.|.|++. ++ .+.+|...|..++.
T Consensus 24 ~Ik~I~~~tga~I~i~~~~~~~-----------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 24 TLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRVT 74 (76)
T ss_dssp HHHHHHHHHCCEEEECCTTCCS-----------TT----CCEEEEEEEES-HH-----HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCEEEECcCCCCC-----------CC----CceeEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence 6899999999999998643211 11 12447888885 44 57888888887764
No 9
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.76 E-value=0.0038 Score=46.23 Aligned_cols=73 Identities=22% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHhhhcccCCccchHHHHHHHHHHHHHhCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCcHHHH
Q psy14719 64 AVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRA 143 (160)
Q Consensus 64 Av~~I~klL~P~~e~~nelK~~QL~ELA~lNGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~~~~~ 143 (160)
-+++|..+|+|-+ +.+|+.|-.--+-+ ..|+++. .| .| + +.-+++++||||.|++.+++
T Consensus 26 ~fn~ig~IIGpgG---~tiK~I~~eTG~kI--~I~G~gS------~~--~e----~-~~~~e~~e~l~V~I~a~~~e--- 84 (119)
T 2yqr_A 26 TFNVKEKVEGPGC---SYLQHIQIETGAKV--FLRGKGS------GC--IE----P-ASGREAFEPMYIYISHPKPE--- 84 (119)
T ss_dssp TTCHHHHHSCGGG---HHHHHHHHHHCCEE--EEESBTT------TC--CC----T-TTSSCCSSBCEEEEEESSHH---
T ss_pred CCCeeeeEECCCC---hHHHHHHHHHCCEE--EEecCCc------cc--cc----c-ccccccCCCcEEEEEeCCHH---
Confidence 4678999999987 77776653322211 2222221 01 01 1 12246999999999998765
Q ss_pred HHHHHHHHHHHHhccC
Q psy14719 144 ELKLARAVEEVQKLLV 159 (160)
Q Consensus 144 ~~~l~~a~~~~~~~l~ 159 (160)
.++.|++.|+.+|.
T Consensus 85 --~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 85 --GLAAAKKLCENLLQ 98 (119)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhh
Confidence 46788888888764
No 10
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=95.62 E-value=0.019 Score=41.06 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=36.6
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|+|+++|||+|.|..... ++ ....+=.|.|++ +.+ .+.+|...|..++..
T Consensus 28 ~Ik~I~~~TGa~I~I~~~~~-------------~~--~~~~~r~V~I~G-~~e-----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 28 NVKAINQQTGAFVEISRQLP-------------PN--GDPNFKLFIIRG-SPQ-----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp HHHHHHHHSSSEEEECCCCC-------------TT--CCTTEEEEEEES-CHH-----HHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhCCEEEEcCccC-------------CC--CCCCceEEEEEC-CHH-----HHHHHHHHHHHHHhc
Confidence 78999999999999976421 11 011234688888 555 588899999888754
No 11
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=95.24 E-value=0.03 Score=40.16 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=34.4
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|+|+|+++|||+|.|...+ + .+.+-.|.|++. ++ .+++|...|..++.
T Consensus 32 ~Ik~I~~~TGakI~I~~~~--------------~----~~~er~V~I~G~-~e-----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 32 MIKKIQNDAGVRIQFKQDD--------------G----TGPEKIAHIMGP-PD-----RCEHAARIINDLLQ 79 (106)
T ss_dssp HHHHHHHHHTCEEEECSSC--------------S----SSSEEEEEEESS-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcEEEEecCC--------------C----CCceeEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence 7899999999999997421 0 112457888874 44 47788888877763
No 12
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=95.07 E-value=0.032 Score=38.10 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=36.1
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|+|+++|||+|.|-..+... |+ ..+=.|.|++. ++ .+..|...|..++..
T Consensus 24 ~Ik~I~~~tga~I~I~~~~~~~-----------~g----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 24 TLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRVTY 75 (87)
T ss_dssp HHHHHHHHHCCEEEECCTTCBS-----------TT----SCEEEEEEESS-HH-----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCEEEEccCCCCC-----------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHhc
Confidence 6799999999999997643211 11 12346888874 44 578888888887743
No 13
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.70 E-value=0.054 Score=37.50 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=35.1
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|+|+++|||+|.|.... + | ..+-.|.|++. ++ .+.+|..+|..++..
T Consensus 36 ~Ik~I~~~tga~I~I~~~~---~--------g-------~~~r~v~I~G~-~e-----~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 36 QISRIQQESGCKIQIAPDS---G--------G-------LPERSCMLTGT-PE-----SVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHHSCCEEEECSCC---T--------T-------CSEEEEEEEEC-HH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEcCCC---C--------C-------CCccEEEEEeC-HH-----HHHHHHHHHHHHHHh
Confidence 6899999999999997642 0 0 12346888885 44 477888888777643
No 14
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.59 E-value=0.062 Score=36.91 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=30.9
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.|+||++|||+|.|-..+ +++ .|.|++. ++ .+.+|..+|..++
T Consensus 31 tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~-~e-----~v~~A~~~I~~~i 74 (83)
T 2dgr_A 31 TIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGM-PE-----NVDRAREEIEAHI 74 (83)
T ss_dssp SHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEEC-TT-----THHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcC-HH-----HHHHHHHHHHHHH
Confidence 7899999999999995421 122 3777775 34 3777877776654
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.34 E-value=0.092 Score=35.42 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=33.9
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|... .|+ ..+=.|.|++. ++ .+.+|...|..++.
T Consensus 28 ~Ik~I~~~tga~I~i~~~--------------~~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 28 RIKQIRHESGASIKIDEP--------------LEG----SEDRIITITGT-QD-----QIQNAQYLLQNSVK 75 (82)
T ss_dssp HHHHHHHHHCCEEEECCT--------------TSC----SSEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEcCC--------------CCC----CCceEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence 689999999999999641 011 12346888883 44 47788888877764
No 16
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.20 E-value=0.082 Score=37.36 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=36.1
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|+|+++|||+|.|-..+. +. ..++=.|.|++.. + .+.+|..+|..++..
T Consensus 36 ~Ik~I~~~tga~I~I~~~~~-------------~~---~~~~~~V~I~G~~-~-----~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 36 TIRSICKASGAKITCDKESE-------------GT---LLLSRLIKISGTQ-K-----EVAAAKHLILEKVSE 86 (104)
T ss_dssp HHHHHHHHHCCEEEECCSSC-------------CS---SSSEEEEEEEEEH-H-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEecCCC-------------CC---CCCcceEEEEcCH-H-----HHHHHHHHHHHHHhh
Confidence 68999999999999976421 00 1234578898853 2 378899999887753
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.11 E-value=0.11 Score=34.50 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=35.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|-.. . |+ ..+=.|.|++. ++ .+.+|...|..++.
T Consensus 26 ~Ik~I~~~tga~I~i~~~---~-----------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 26 KINEIRQMSGAQIKIANP---V-----------EG----STDRQVTITGS-AA-----SISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHHHCCEEEECCC---C-----------TT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEEcCC---C-----------CC----CCeEEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence 679999999999999751 0 11 12447889885 44 57889888888764
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.02 E-value=0.087 Score=35.48 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=35.4
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|+|+++|||+|.|-... ++ ..+=.|.|++. ++ .+.+|..+|..++..
T Consensus 27 ~Ik~I~~~sga~I~i~~~~--------------~~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 27 NINEIRQMSGAQIKIANPV--------------EG----SSGRQVTITGS-AA-----SISLAQYLINARLSS 75 (82)
T ss_dssp HHHHHHHHHCCEEEECCCC--------------TT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHTC-
T ss_pred hHHHHHHHhCCEEEEecCC--------------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHHh
Confidence 6899999999999997521 11 12447888885 34 578899999888754
No 19
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=93.82 E-value=0.13 Score=35.29 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=33.3
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|... .|+ ..+=.|.|++. ++ .+.+|...|..++.
T Consensus 35 ~Ik~I~~~tga~I~I~~~--------------~~~----~~~~~v~I~G~-~e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 35 RIKQIRHESGASIKIDEP--------------LEG----SEDRIITITGT-QD-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHHHTCCEEEECSC--------------CSS----SSEEEEEEEEE-HH-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCeEEecCC--------------CCC----CCccEEEEEcC-HH-----HHHHHHHHHHHHHH
Confidence 689999999999999641 011 12336888885 44 47778888877653
No 20
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.38 E-value=0.084 Score=36.71 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=32.7
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.|+|+++|||+|.|-..++ .+=.|.|++. .+ .+.+|..+|..++
T Consensus 38 ~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~e-----~v~~A~~~I~~i~ 82 (94)
T 2cte_A 38 KLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-KE-----GIEKARHEVLLIS 82 (94)
T ss_dssp HHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-HH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-HH-----HHHHHHHHHHHHh
Confidence 78999999999999954210 1127889886 44 4777888887765
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.27 E-value=0.18 Score=33.33 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=33.6
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|-..|+ .+=-|.|++. ++ .+.+|..+|..+|.
T Consensus 26 ~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~-~~-----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 26 SVKKMREESGARINISEGNC--------------------PERIITLAGP-TN-----AIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence 67999999999999965321 1225788886 45 47888888877664
No 22
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=92.61 E-value=0.25 Score=32.47 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=32.8
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.++|+++|||+|.|--.|+ + +=-|.|++. .+ .+.+|..+|..+.
T Consensus 26 ~I~~I~e~tg~~I~i~~~g~-------------~-------~~~V~I~G~-~~-----~v~~A~~~I~~i~ 70 (71)
T 1vig_A 26 NINRIKDQYKVSVRIPPDSE-------------K-------SNLIRIEGD-PQ-----GVQQAKRELLELA 70 (71)
T ss_dssp HHHHHHHHTCCEEECCCCCS-------------S-------SEEEEEEES-SH-----HHHHHHHHHHHTC
T ss_pred cHHHHHHHHCCEEEECCCCC-------------c-------ccEEEEEcC-HH-----HHHHHHHHHHHHh
Confidence 68999999999999965432 0 115888886 44 4788888887664
No 23
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.41 E-value=0.2 Score=35.06 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=32.3
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.|+|+++|||+|.|--.|. |+ ..+=-|.|++. .+ .+.+|...|..++
T Consensus 38 ~Ik~I~~etg~~I~i~~~g~-------------~~----~~~~~V~I~G~-~e-----~v~~A~~~I~~iv 85 (97)
T 2ctl_A 38 VITQIRLEHDVNIQFPDKDD-------------GN----QPQDQITITGY-EK-----NTEAARDAILRIV 85 (97)
T ss_dssp HHHHHHHHHTCEEECCCTTT-------------CS----SCSSEEEEESC-HH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCEEEecCCCC-------------CC----CCccEEEEEeC-HH-----HHHHHHHHHHHHH
Confidence 68999999999999965442 11 01235888885 44 3666777776654
No 24
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=92.18 E-value=0.25 Score=36.72 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|+|+++|||+|.|-..|+ |+ .+++-.|.|++ +++ .+..|..+|..++..
T Consensus 106 ~I~~i~~~tga~I~i~~~~~-------------~~---~~~~~~v~I~G-~~~-----~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 106 TVNELQNLTAAEVVVPRDQT-------------PD---ENDQVIVKIIG-HFY-----ASQMAQRKIRDILAQ 156 (163)
T ss_dssp HHHHHHHHHCCEEECCTTCC-------------CC---TTSEEEEEEEE-CHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEECCCCC-------------CC---CCCceEEEEEe-CHH-----HHHHHHHHHHHHHHH
Confidence 67999999999999976432 21 23445788998 455 478888888888743
No 25
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.90 E-value=0.27 Score=34.32 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=32.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.|+|+++|||+|.|-..|+. .+=.|.|++. ++ .+.+|.+.|..+.
T Consensus 38 ~Ir~I~e~tg~~I~i~~~g~~-------------------~~~~V~I~G~-~e-----~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 38 AIRKIMDEFKVDIRFPQSGAP-------------------DPNCVTVTGL-PE-----NVEEAIDHILNLE 83 (95)
T ss_dssp HHHHHHHHHTCEEECCCTTCS-------------------CTTEEEEESC-HH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCeEEecCCCCC-------------------CCcEEEEEcC-HH-----HHHHHHHHHHHHH
Confidence 789999999999999654421 1226888885 34 3667777776554
No 26
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.52 E-value=0.28 Score=34.79 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=33.8
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|=-.|+. + =.|.|++.. + .+.+|...|..++.
T Consensus 38 ~Ir~I~eetg~~I~I~~~g~~------------~--------~~V~I~G~~-e-----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 38 GIRKMMDEFEVNIHVPAPELQ------------S--------DIIAITGLA-A-----NLDRAKAGLLERVK 83 (104)
T ss_dssp HHHHHHHHTCCEEECCCTTTT------------C--------CEEEEEECH-H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEecCCCCC------------c--------ceEEEEcCH-H-----HHHHHHHHHHHHHh
Confidence 689999999999999654320 1 178888863 4 47888888877763
No 27
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=88.87 E-value=0.62 Score=34.32 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=33.7
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|-..+. . ..+=.|.|++. ++ .+..|...|..++.
T Consensus 112 ~I~~i~~~tg~~I~i~~~~~--------------~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 112 MIKKIQNDAGVRIQFKQDDG--------------T----GPEKIAHIMGP-PD-----RCEHAARIINDLLQ 159 (164)
T ss_dssp HHHHHHHHTCCEEEECCCCT--------------T----SSEEEEEEESC-HH-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCeEEEeCCCC--------------C----CCcEEEEEEcC-HH-----HHHHHHHHHHHHHh
Confidence 68999999999999975321 0 12346778874 44 47778888877763
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=88.59 E-value=0.9 Score=33.43 Aligned_cols=52 Identities=29% Similarity=0.315 Sum_probs=35.1
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ 75 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~ 75 (160)
|.|+|+++|||+|.|--.++. + ...+-.|.|++ +++ .+.+|...|..++...
T Consensus 23 ~Ik~i~~~tg~~I~i~~~~~~------------~----~~~~r~v~I~G-~~~-----~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 23 TIKQLQERAGVKMILIQDGSQ------------N----TNVDKPLRIIG-DPY-----KVQQACEMVMDILRER 74 (164)
T ss_dssp HHHHHHHTSCSEEEECCCTTS------------S----SSSCEEEEEEE-CHH-----HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCeEEEecCCCC------------C----CCCceEEEEEc-CHH-----HHHHHHHHHHHHHHhc
Confidence 689999999999999532211 1 11234678888 344 4778888888877643
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=87.66 E-value=1 Score=33.71 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=32.9
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|+|+++|||+|.|-.. + ++ ..+-.|.|++. ++ .+.+|...|..++.
T Consensus 24 ~Ik~i~~~tg~~I~i~~~----~----------~~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 24 MIKKIQNDAGVRIQFKPD----D----------GT----TPERIAQITGP-PD-----RAQHAAEIITDLLR 71 (174)
T ss_dssp HHHHHHHHHCCEEEEECC----T----------TS----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEecC----C----------CC----CCccEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence 689999999999999642 1 00 12346778875 33 47778888877764
No 30
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=86.84 E-value=0.83 Score=31.91 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=31.7
Q ss_pred cHHhhhHHh-CCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELET-GCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eT-gcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|+|+|+++| ||+|.|--.||. .=-|.|.+.+. .+++|.++|..++.
T Consensus 38 ~Ir~I~eetggv~I~i~~~g~~--------------------~~~V~I~G~~~------~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 38 LIRSIMEECGGVHIHFPVEGSG--------------------SDTVVIRGPSS------DVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHHHTSCEEECCCTTTT--------------------CCEEEEESCHH------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEeCCCCCC--------------------cceEEEEcCHH------HHHHHHHHHHHHHh
Confidence 689999999 999998543321 11588887532 36778888876653
No 31
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=85.66 E-value=0.97 Score=33.96 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=33.9
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ 75 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~ 75 (160)
|.|+|+++|||+|.|-..+..- |+ .. +=-|.|++. .+ .+.+|..+|..++...
T Consensus 27 ~Ik~i~~~tg~~I~i~~~~~~~-----------~~---~~-er~v~I~G~-~~-----~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 27 TIVQLQKETGATIKLSKSKDFY-----------PG---TT-ERVCLIQGT-IE-----ALNAVHGFIAEKIREM 79 (178)
T ss_dssp HHHHHHHHHCCEEEECCTTCBC-----------TT---SS-EEEEEEEEC-HH-----HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCeEEEecCCCCC-----------CC---CC-CceEEEEeC-HH-----HHHHHHHHHHHHHhcc
Confidence 6899999999999996532111 11 11 224677774 33 4677888887777543
No 32
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=83.20 E-value=1.2 Score=33.36 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=35.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ 75 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~ 75 (160)
|.|+|+++|||+|.|-..... ++ ..+=.|.|++. ++ .+.+|...|..++...
T Consensus 125 ~Ik~i~~~tga~I~i~~~~~~------------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 125 TVKAIMEQSGAWVQLSQKPDG------------IN----LQNRVVTVSGE-PE-----QNRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESS-HH-----HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCEEEEeCCCCC------------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHHhC
Confidence 689999999999999754210 11 12336777774 33 5788999998887643
No 33
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=80.68 E-value=4.8 Score=31.58 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=15.6
Q ss_pred cHHhhhHHhCCeEEEec
Q psy14719 2 TAKQLELETGCKIMVRG 18 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRG 18 (160)
|.|.||..|||+|.|-|
T Consensus 119 tik~iE~~Tg~~I~v~~ 135 (191)
T 1tua_A 119 ARRTIEEMTDTYINVGE 135 (191)
T ss_dssp HHHHHHHHHTCEEEECS
T ss_pred HHHHHHHHHCceEEEcC
Confidence 78999999999999965
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=79.04 E-value=4.1 Score=29.93 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=16.0
Q ss_pred cHHhhhHHhCCeEEEecC
Q psy14719 2 TAKQLELETGCKIMVRGK 19 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGk 19 (160)
|.|+|+++|||+|.|--.
T Consensus 24 ~Ik~i~~~tg~~I~i~~~ 41 (163)
T 3krm_A 24 HIKQLSRFASASIKIAPP 41 (163)
T ss_dssp HHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHCCeEEEcCC
Confidence 679999999999999764
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=78.64 E-value=3.3 Score=30.36 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.9
Q ss_pred cHHhhhHHhCCeEEEecC
Q psy14719 2 TAKQLELETGCKIMVRGK 19 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGk 19 (160)
|.|+|+++|||+|.|-..
T Consensus 26 ~Ik~i~~~tg~~I~i~~~ 43 (160)
T 2jzx_A 26 SVKKMREESGARINISEG 43 (160)
T ss_dssp HHHHHHHHHCSEEEEECC
T ss_pred HHHHHHHHHCCEEEEcCC
Confidence 689999999999999753
No 36
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=78.40 E-value=2.9 Score=33.40 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=31.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 74 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P 74 (160)
|.|.||..|||+|.|-|+ .|.|.+. ++ .+..|...|..++..
T Consensus 150 tik~ie~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 150 TRQIIEEMSGASVSVYGK-------------------------TVAIIGN-PI-----QIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHCCEEEEETT-------------------------EEEEEEC-HH-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCceEEECCe-------------------------EEEEEeC-HH-----HHHHHHHHHHHHHcC
Confidence 789999999999999641 2666763 44 367777788888744
No 37
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=73.43 E-value=4.2 Score=28.43 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=30.8
Q ss_pred cHHhhhHHhCCe-EEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhh
Q psy14719 2 TAKQLELETGCK-IMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKL 71 (160)
Q Consensus 2 TlK~LE~eTgcK-I~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~kl 71 (160)
|.|++.++||++ |.|-- ++=.|.|.+.+.+ .+++|.++|+.+
T Consensus 36 ~Ik~I~e~tGv~~IdI~e-----------------------ddG~V~I~g~~~e-----a~~~A~~~I~~i 78 (91)
T 2cpq_A 36 NIQQARKVPGVTAIELDE-----------------------DTGTFRIYGESAD-----AVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHTSTTEEEEEEET-----------------------TTTEEEEEESSHH-----HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCeEEEEEc-----------------------CCCEEEEEECCHH-----HHHHHHHHHHhh
Confidence 678999999998 99931 1126889997766 477788777544
No 38
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=49.60 E-value=31 Score=25.18 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=31.2
Q ss_pred cHHhhhHHhCC-eEEEecCCCCCCchhhhhhCCCCCCcCCCCcc-eEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGC-KIMVRGKGSMRDKKKEEANRGKPNWEHLSEEL-HVLISVEDTENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgc-KI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~L-HVlI~a~~~~~~a~~kl~~Av~~I~klL 72 (160)
|.|.+++.||| +|.|.+..... .| .++.+ -|.|++. .+ .+..|...|...|
T Consensus 88 nIr~i~~~tG~~~I~i~~~~~~~----------~~----~~~~~~~vtI~G~-~~-----~v~~Ak~li~~~l 140 (144)
T 2qnd_A 88 LIQEIVDKSGVVRVRIEAENEKN----------VP----QEEGMVPFVFVGT-KD-----SIANATVLLDYHL 140 (144)
T ss_dssp HHHHHHHHHTCSEEEEEEECTTC----------CC----CCTTEEEEEEEEE-HH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEcCCCCCC----------cc----ccCCeeEEEEEeC-HH-----HHHHHHHHHHHHH
Confidence 57899999998 99998743110 01 12222 3667774 33 4667777776555
No 39
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=47.23 E-value=8 Score=29.70 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=17.5
Q ss_pred cHHhhhHHhCCeEEEecCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGS 21 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS 21 (160)
.+++||++.|+++.+|++|-
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~~ 59 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKPC 59 (303)
T ss_dssp HHHHHHHHHTSCCEECSSSC
T ss_pred HHHHHHHHhCCeeEEcCCCC
Confidence 47899999999999999753
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=46.24 E-value=33 Score=27.13 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=30.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeC----cHHHHHHHHHHHHHHHhhhc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVED----TENRAELKLARAVEEVQKLL 72 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~----~~~~a~~kl~~Av~~I~klL 72 (160)
|.|.|+++|||+|-|--. + =-|.|.+.+ ++ .+.+|.++|..+.
T Consensus 55 ~Ik~I~e~tgvkI~I~~~----~-------------------g~V~I~~~~~t~d~~-----~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 55 TKKEIEKRTKTKITIDSE----T-------------------GEVWITSTKETEDPL-----AVWKARDIVLAIG 101 (219)
T ss_dssp HHHHHHHHHTEEEEECTT----T-------------------CEEEEEECTTCCSHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcEEEEEcC----C-------------------CEEEEecCCCCCCHH-----HHHHHHHHHHHHh
Confidence 678999999999999421 0 135666543 34 4778888887766
No 41
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=38.75 E-value=13 Score=28.32 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRD 24 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd 24 (160)
.+|+||++.|+++.+|.++.+.-
T Consensus 37 ~i~~LE~~lg~~Lf~R~~~~~~l 59 (306)
T 3hhg_A 37 IVKRLEEKLGVNLLNRTTRQLSL 59 (306)
T ss_dssp HHHHHHHHHTSCCEETTSSSCEE
T ss_pred HHHHHHHHhCCeeEeecCCCeeE
Confidence 37899999999999997765553
No 42
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=36.48 E-value=11 Score=28.16 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=18.4
Q ss_pred cHHhhhHHhCCeEEEecCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMR 23 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~k 23 (160)
.+|+||++.|+++.+|.++.+.
T Consensus 35 ~i~~LE~~lg~~Lf~R~~~~~~ 56 (291)
T 3szp_A 35 RIQALEDSLNLRLLNRHARKLT 56 (291)
T ss_dssp HHHHHHHHHTCCCEEEETTEEE
T ss_pred HHHHHHHHhCCceEeecCCCcc
Confidence 4789999999999999765554
No 43
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=34.94 E-value=9.1 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=11.9
Q ss_pred cHHhhhHHhCCeEEEe-c-CCCC
Q psy14719 2 TAKQLELETGCKIMVR-G-KGSM 22 (160)
Q Consensus 2 TlK~LE~eTgcKI~IR-G-kGS~ 22 (160)
.+++||++.|+++.+| + +|-.
T Consensus 38 ~i~~LE~~lg~~Lf~R~~~~~~~ 60 (306)
T 3fzv_A 38 AVKGLEESFGVQLFIRHHAQGVS 60 (306)
T ss_dssp HHHHHHHHC-CCCC---------
T ss_pred HHHHHHHHhCCeeEeecCCCCce
Confidence 3689999999999999 4 4443
No 44
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=32.04 E-value=14 Score=28.00 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=15.3
Q ss_pred cHHhhhHHhCCeEEEecCCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRD 24 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd 24 (160)
.+|+||++.|+++.+|+...+.-
T Consensus 35 ~i~~LE~~lg~~Lf~R~~~~~~l 57 (294)
T 1ixc_A 35 QMQALEADLGVVLLERSHRGIEL 57 (294)
T ss_dssp HHHHHHHHHTSCCBC-----CCB
T ss_pred HHHHHHHHHCCEEEEeCCCCeeE
Confidence 36999999999999998665543
No 45
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=31.74 E-value=52 Score=27.47 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=18.0
Q ss_pred eEEEEeeCcHHHHHHHHHHHHHHHh
Q psy14719 45 HVLISVEDTENRAELKLARAVEEVQ 69 (160)
Q Consensus 45 HVlI~a~~~~~~a~~kl~~Av~~I~ 69 (160)
||.+++++ .++|..++..+++.+.
T Consensus 376 hv~~~~~~-~~~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 376 HITVTAPT-MHEAETHIQPLIDVVD 399 (403)
T ss_dssp EEEEECSS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEcCC-HHHHHHHHHHHHhhhh
Confidence 99999975 4467777777777764
No 46
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=31.56 E-value=14 Score=28.25 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=18.3
Q ss_pred cHHhhhHHhCCeEEEecCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMR 23 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~k 23 (160)
.+|+||++.|+++.+|....+.
T Consensus 44 ~I~~LE~~lg~~Lf~R~~~~~~ 65 (310)
T 2esn_A 44 ALGRLRQGLDDELFLRQGNRMQ 65 (310)
T ss_dssp HHHHHHHHHTSCCEEEETTEEE
T ss_pred HHHHHHHhhCCcceeecCCCcc
Confidence 3699999999999999765544
No 47
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=30.26 E-value=20 Score=27.50 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.2
Q ss_pred cHHhhhHHhCCeEEEecCCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRD 24 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd 24 (160)
.+++||++.|+++.+|..+.+.-
T Consensus 36 ~i~~LE~~lg~~Lf~R~~r~~~l 58 (305)
T 3fxq_A 36 AIQQLEDELKAPLLVRTKRGVSL 58 (305)
T ss_dssp HHHHHHHHHTSCSEEECSSSEEE
T ss_pred HHHHHHHHhCCeeEEecCCCccC
Confidence 47899999999999998766543
No 48
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=29.26 E-value=11 Score=28.17 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMR 23 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~k 23 (160)
.+|+||++.|+++.+|+.+.+.
T Consensus 32 ~i~~LE~~lg~~Lf~R~~~~~~ 53 (300)
T 3mz1_A 32 LIQGLEAHLRTKLLNRTTRRVL 53 (300)
T ss_dssp ----------------------
T ss_pred HHHHHHHHhCCeeEecCCCcee
Confidence 4789999999999999765554
No 49
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=27.79 E-value=18 Score=26.49 Aligned_cols=12 Identities=50% Similarity=0.996 Sum_probs=10.1
Q ss_pred HHhCCeEEEecC
Q psy14719 8 LETGCKIMVRGK 19 (160)
Q Consensus 8 ~eTgcKI~IRGk 19 (160)
.-|||||-|+|-
T Consensus 83 sntgcKIRvqgd 94 (124)
T 2kie_A 83 SNSGCKIRVQGD 94 (124)
T ss_dssp GCSSEEEEEESS
T ss_pred CCCCcEEEEecc
Confidence 458999999993
No 50
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=25.90 E-value=14 Score=28.58 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=0.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMR 23 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~k 23 (160)
.+|+||++.|+++.+|+...+.
T Consensus 35 ~I~~LE~~lg~~Lf~R~~r~~~ 56 (312)
T 2h9b_A 35 QIQNLEEELGIQLLERGSRPVK 56 (312)
T ss_dssp ----------------------
T ss_pred HHHHHHHHhCCEeEeeCCCCce
Confidence 4689999999999999865554
No 51
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=25.57 E-value=17 Score=34.03 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=9.2
Q ss_pred cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV 73 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~ 73 (160)
|.|.|+++||++|.|--. =.|.|.+.+.+ .+++|.+.|..+..
T Consensus 591 ~i~~i~~~tg~~idi~dd------------------------G~v~I~~~~~~-----~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 591 VIREIVATTGAKVDINDD------------------------GVVKVSASDGA-----KIKAAIDWIKSITD 633 (726)
T ss_dssp -----------------------------------------------CCSCHH-----HHHHHHHC------
T ss_pred hHHHHHHHHCCceeEECC------------------------ceEEEEeCCHH-----HHHHHHHHHHHHhh
Confidence 678999999999976432 24566766555 46777777766663
No 52
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=24.45 E-value=16 Score=28.44 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRD 24 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd 24 (160)
.+|+||++.|+++.+|+...+.-
T Consensus 48 ~I~~LE~~lg~~Lf~R~~r~~~l 70 (315)
T 1uth_A 48 SLKRLRTALNDDLFLRTSKGMEP 70 (315)
T ss_dssp -----------------------
T ss_pred HHHHHHHHhCCcceeecCCCccC
Confidence 46899999999999998765543
No 53
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=23.79 E-value=92 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=27.8
Q ss_pred HhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcc-eEEEEeeCcHHHHHHHHHHHHHHHh
Q psy14719 9 ETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEEL-HVLISVEDTENRAELKLARAVEEVQ 69 (160)
Q Consensus 9 eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~L-HVlI~a~~~~~~a~~kl~~Av~~I~ 69 (160)
.-|+++.+-||...|.+. .+ ||.++++|. ++|..++.++.+.|.
T Consensus 371 ~p~~~~~~ygk~~~~~~r----------------kmGhv~~~~~~~-~~~~~~a~~~~~~l~ 415 (419)
T 4e4t_A 371 MPAAHLHLYGKEEARVGR----------------KMGHVNFTAEMR-DDAVAAATACAQLLR 415 (419)
T ss_dssp STTEEEEECCCSCCCTTC----------------EEEEEEEECSSH-HHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCCCCC----------------ceEEEEEEeCCH-HHHHHHHHHHHHhcC
Confidence 446666666765554332 22 999999764 457777777776653
No 54
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=23.74 E-value=17 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=0.0
Q ss_pred cHHhhhHHhCCeEEEecCCCCCC
Q psy14719 2 TAKQLELETGCKIMVRGKGSMRD 24 (160)
Q Consensus 2 TlK~LE~eTgcKI~IRGkGS~kd 24 (160)
.+|+||++.|+++.+|+.+.+.-
T Consensus 35 ~I~~LE~~lG~~Lf~R~~r~v~l 57 (313)
T 2h98_A 35 QIQKLEEELGIQLFERGFRPAKV 57 (313)
T ss_dssp -----------------------
T ss_pred HHHHHHHHhCCeeEEcCCCCeEE
Confidence 46899999999999998765543
No 55
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=20.72 E-value=42 Score=24.50 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=16.3
Q ss_pred HHhhhHHhCCeEEEecCC
Q psy14719 3 AKQLELETGCKIMVRGKG 20 (160)
Q Consensus 3 lK~LE~eTgcKI~IRGkG 20 (160)
+++||++.|+++..|..|
T Consensus 59 I~~LE~~lG~~Lf~R~~~ 76 (135)
T 2ijl_A 59 VDALNHMFRQPVICSQRG 76 (135)
T ss_dssp HHHHHHHBSSCSEEECCC
T ss_pred HHHHHHHHCCeeEEecCC
Confidence 689999999999999863
Done!