RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14719
(160 letters)
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA
binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Length = 140
Score = 137 bits (345), Expect = 2e-42
Identities = 86/103 (83%), Positives = 94/103 (91%)
Query: 1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
+TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 28 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87
Query: 61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
L RAVEEV+KLLVP AEGED LKK +LMELAI+NGTYRD N K
Sbjct: 88 LKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130
Score = 58.0 bits (140), Expect = 1e-11
Identities = 39/48 (81%), Positives = 44/48 (91%)
Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
EE NRGKPNWEHL+E+LHVLI+VED +NRAELKL RAVEEV+KLLVP
Sbjct: 54 KEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP 101
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA
recognition, complex E, KH domain, QUA2 homology; NMR
{Homo sapiens} SCOP: d.51.1.1
Length = 131
Score = 111 bits (278), Expect = 2e-32
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
T K +E E KIM+RGKGS+++ K + E LH L++ E
Sbjct: 33 NTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTANTME-----N 85
Query: 61 LARAVEEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
+ +AVE+++ +L + E +++L+K QL ELA +NGT R+++ +
Sbjct: 86 VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNR 131
Score = 39.8 bits (93), Expect = 5e-05
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
+ + E LH L++ E + +AVE+++ +L
Sbjct: 57 GKVGRKDGQMLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQ 99
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 63.4 bits (154), Expect = 6e-14
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
+ +++ETG K+ +RGKGS + E +++ IS E
Sbjct: 39 SYLQHIQIETGAKVFLRGKGS--------GCIEPASGREAFEPMYIYISHPKPEG----- 85
Query: 61 LARAVEEVQKLLVPQAEGEDELKKRQ 86
LA A + + LL +
Sbjct: 86 LAAAKKLCENLLQTVHAEYSRFVNQI 111
Score = 37.6 bits (87), Expect = 3e-04
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 116 ANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
+ E +++ IS E LA A + + LL
Sbjct: 60 GCIEPASGREAFEPMYIYISHPKPEG-----LAAAKKLCENLLQT 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 38/140 (27%)
Query: 11 GCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVE-EVQ 69
CKI++ + R K+ + H+S + H +++ E + L L + ++ Q
Sbjct: 265 SCKILL----TTRFKQVTDFLSAA-TTTHISLD-HHSMTLTPDEVK-SL-LLKYLDCRPQ 316
Query: 70 KLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHL-SE 128
L P+ E+ L+II A ++ + NW+H+ +
Sbjct: 317 DL--PR-----EVLTTNPRRLSII------------AESI---RDGLATWD-NWKHVNCD 353
Query: 129 ELHVLISV-----EDTENRA 143
+L +I E E R
Sbjct: 354 KLTTIIESSLNVLEPAEYRK 373
Score = 35.2 bits (80), Expect = 0.006
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 51/164 (31%)
Query: 20 GSMRDKKKEEANRG-----KPNWEHLSEELHV------LISVEDTENRAELKLARAVEEV 68
++ K++E + + N++ L + +++ E R +L +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVF 126
Query: 69 QKLLVPQAEGEDELKKRQLMELA-----IING------TYRDNNAKVLAAAVFVFSEEAN 117
K V + + +L++ L+EL +I+G T +A V S +
Sbjct: 127 AKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKT-------WVALDV-CLSYKVQ 177
Query: 118 RGKPN---WEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL 158
W +L N E L E +QKLL
Sbjct: 178 CKMDFKIFWLNLKN-----------CNSPETVL----EMLQKLL 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.005
Identities = 27/182 (14%), Positives = 66/182 (36%), Gaps = 51/182 (28%)
Query: 5 QLELETGCKI---M--VRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTEN---- 55
+ LE + M + + ++ ++ K N HL V IS+ +
Sbjct: 325 EDSLENNEGVPSPMLSISN---LTQEQVQDYVN-KTN-SHLPAGKQVEISLVNGAKNLVV 379
Query: 56 ----RAELKLARAVEEVQKLLVPQAEGEDELK----KRQL---ME-LAIINGTYRDNNA- 102
++ L ++K P G D+ + +R+L L + +
Sbjct: 380 SGPPQS---LYGLNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRFLPV--------ASP 426
Query: 103 ---KVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAV-EEVQKLL 158
+L A + +++ + ++ ++++ I V DT + ++L R + + + +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFN--AKDIQ--IPVYDTFDGSDL---RVLSGSISERI 479
Query: 159 VP 160
V
Sbjct: 480 VD 481
Score = 26.6 bits (58), Expect = 5.3
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 53 TENRAELKLARAVEEVQKLLVP----QAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
+ ++ L RAV E LV Q +D + EL + TY ++ +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDLYQTYHVLVGDLIKFS 191
Query: 109 VFVFSEEANRGKPNWE-HLSEELHVLISVEDTENR 142
SE R + E ++ L++L +E+ N
Sbjct: 192 AETLSELI-RTTLDAEKVFTQGLNILEWLENPSNT 225
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.13
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 21/46 (45%)
Query: 66 EEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLA--AAV 109
+ ++KL + LK Y D++A LA A +
Sbjct: 20 QALKKL-------QASLKL------------YADDSAPALAIKATM 46
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 28.6 bits (64), Expect = 0.77
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 19/102 (18%)
Query: 33 GKPNWE---HLSEELHVLISVEDTENRAELKLARAVEE---VQKLLVPQAEGEDELKKRQ 86
G ++ + + V E K E KL + L
Sbjct: 78 GWRTYDAIAKFAPDFADEEYVNKLEGEIPEKYGEHSIEVPGAVKLC-------NALNALP 130
Query: 87 LMELAIINGTYRDNNAKVLAAA------VFVFSEEANRGKPN 122
+ A+ RD K F+ + + +GKP+
Sbjct: 131 KEKWAVATSGTRDMAKKWFDILKIKRPEYFITANDVKQGKPH 172
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.0 bits (63), Expect = 0.99
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 34 KPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELA 91
+P W H + LI V D+ +R ++ + +E+QK+L EDEL+ L+ A
Sbjct: 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESA--DELQKML-----QEDELRDAVLLVFA 137
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.50A {Rhodobacter
sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
2o7f_A*
Length = 521
Score = 26.8 bits (60), Expect = 3.4
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 90 LAIINGT-----------YRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVL 133
LA++NGT + + A A+ E RG+ E + L L
Sbjct: 197 LALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRT--EAWAAALSDL 249
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal
IMP4-BRIX domain, IMP4 domain; 2.0A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.51.1.2
Length = 156
Score = 26.2 bits (57), Expect = 3.6
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 3 AKQLELETGCKIMVRGKGSMRDKKKEEAN--------RGKPNW-----EHLSEELHVLIS 49
+++L G + + RGK S+RD E G P E E ++L +
Sbjct: 18 SQRLSRIMGWRYINRGKMSLRDVLIEARGPVAVVSERHGNPARITFLDERGGERGYILFN 77
Query: 50 VEDTENRAELK 60
+ EL
Sbjct: 78 PSFEMKKPELA 88
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 26.5 bits (59), Expect = 4.5
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 13/55 (23%)
Query: 90 LAIINGT-----------YRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVL 133
LA+INGT V S E GK + +H +
Sbjct: 214 LALINGTSAMVGLGVLLYDEVKRLFDTYLTVTSLSIEGLHGKT--KPFEPAVHRM 266
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 26.2 bits (58), Expect = 5.2
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 37 WEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGE--DELKKRQLMELAIIN 94
+L+++ + + + E + A+ V + A E L+ + AI +
Sbjct: 79 LAYLAQQHDFVPPPDFLD-VLETRFNAAMTGVT--AIEGAA-ETLRALRAAGV-PFAIGS 133
Query: 95 GTYRDNNAKVLAAA---------VFVFSEEANRGKP 121
+ R L A ++ S RGKP
Sbjct: 134 NSERGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKP 169
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation;
HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB:
1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Length = 507
Score = 26.0 bits (58), Expect = 5.8
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 13/55 (23%)
Query: 90 LAIINGT-----------YRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVL 133
LA++NGT + + A A S EA G +H
Sbjct: 189 LALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSR--SPFDARIHEA 241
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 26.1 bits (58), Expect = 6.8
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 13/55 (23%)
Query: 90 LAIINGT-----------YRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVL 133
LA+INGT R A V EA RG E H +
Sbjct: 188 LALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGST--SPFLAEGHDI 240
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 25.6 bits (57), Expect = 7.2
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 35 PNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELA 91
P W E +LI V D+ +R + +E+ +LL E++L ++ A
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETG--QELTELL-----EEEKLSCVPVLIFA 124
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A
{Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Length = 716
Score = 25.5 bits (56), Expect = 9.5
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 13/55 (23%)
Query: 90 LAIINGT-----------YRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVL 133
L ++NGT + + +L+ ++ + EA G LH +
Sbjct: 266 LGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHA--GSFHPFLHDV 318
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.346
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,402,756
Number of extensions: 141499
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 39
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.3 bits)