RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14719
         (160 letters)



>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 134

 Score =  140 bits (355), Expect = 2e-44
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 28  LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
           L RAVEEV+KLLVP AEGED LKK +LMELAI+NGTYRD N K
Sbjct: 88  LKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130



 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 39/48 (81%), Positives = 44/48 (91%)

Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
            EE NRGKPNWEHL+E+LHVLI+VED +NRAELKL RAVEEV+KLLVP
Sbjct: 54  KEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP 101


>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 122

 Score =  109 bits (275), Expect = 2e-32
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
            T K +E E   KIM+RGKGS+++ K     +         E LH L++    EN    K
Sbjct: 29  NTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTANTMENVK--K 84

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYR 98
               +  + K  +   E +++L+K QL ELA +NGT R
Sbjct: 85  AVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLR 122



 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
            +   +         E LH L++    EN       +AVE+++ +L  
Sbjct: 53  GKVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQ 95


>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal
           subdomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 28.2 bits (63), Expect = 0.24
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 33  GKPNWEHLSEELHVLISVEDTENRAELK-LARAVEEVQKLL-VPQAEGEDELKKRQLMEL 90
            K N+E   +E+      E+T   + +K L  AV  + K L +   E  D++   +    
Sbjct: 6   MKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHT 65

Query: 91  AIINGTYRDNNAKVLAAAVFVFSE 114
            ++ G +R     +L  +  +  +
Sbjct: 66  LLLAGVFR-GGHDILVRSRLLLLD 88


>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 130

 Score = 26.6 bits (59), Expect = 0.80
 Identities = 10/55 (18%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 64  AVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVF--VFSEEA 116
            + ++ ++L+PQ   +  ++  +L++L +++    +    +LAA+      S E 
Sbjct: 16  YLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSEL 70


>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 132

 Score = 25.6 bits (56), Expect = 2.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 1  MTAKQLELETGCKIMVRGK 19
          +   QL+++ G  + V+GK
Sbjct: 3  LVVTQLDVQPGECVKVKGK 21


>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
           [TaxId: 10665]}
          Length = 241

 Score = 25.4 bits (55), Expect = 3.3
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 85  RQLMELAIINGTYRDNNAKV----LAAAVFVFSEEANRGKPNWEHLSEEL 130
           R  + LA+    +  +   V    +  A FV  E    G  N E++  EL
Sbjct: 12  RLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEYIQREL 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.128    0.346 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 557,608
Number of extensions: 24581
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 17
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.1 bits)