Query psy14722
Match_columns 87
No_of_seqs 106 out of 1073
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:59:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0655|consensus 99.8 1.3E-20 2.7E-25 128.0 5.3 85 3-87 114-200 (408)
2 KOG0653|consensus 99.8 1.4E-18 3E-23 121.6 6.9 65 23-87 148-213 (391)
3 KOG0656|consensus 99.8 4.1E-18 8.9E-23 116.6 8.3 85 3-87 46-135 (335)
4 COG5024 Cyclin [Cell division 99.7 3.9E-17 8.4E-22 115.1 6.1 84 4-87 183-267 (440)
5 PF00134 Cyclin_N: Cyclin, N-t 99.6 2.4E-14 5.1E-19 85.6 8.1 77 11-87 8-85 (127)
6 cd00043 CYCLIN Cyclin box fold 99.2 8.9E-11 1.9E-15 65.0 5.1 55 33-87 2-56 (88)
7 KOG0654|consensus 99.1 1.5E-11 3.3E-16 85.2 1.1 63 25-87 129-191 (359)
8 smart00385 CYCLIN domain prese 99.0 4.3E-10 9.3E-15 61.7 4.2 50 38-87 1-50 (83)
9 KOG0656|consensus 98.8 1.1E-08 2.3E-13 70.7 5.3 71 2-72 95-197 (335)
10 KOG0655|consensus 98.7 3.4E-09 7.4E-14 72.8 -0.3 42 1-42 161-203 (408)
11 TIGR00569 ccl1 cyclin ccl1. Un 98.5 3.6E-07 7.9E-12 62.6 6.1 57 31-87 54-112 (305)
12 KOG0653|consensus 98.1 2.1E-06 4.6E-11 60.6 2.8 42 1-42 174-216 (391)
13 COG5024 Cyclin [Cell division 97.8 1.5E-05 3.4E-10 57.0 3.3 42 1-42 229-270 (440)
14 KOG0834|consensus 97.7 8E-05 1.7E-09 51.6 5.0 58 30-87 36-93 (323)
15 COG5333 CCL1 Cdk activating ki 97.7 0.00012 2.5E-09 50.1 5.4 57 31-87 43-99 (297)
16 KOG0794|consensus 97.3 0.00057 1.2E-08 45.5 5.0 49 39-87 47-95 (264)
17 PF00134 Cyclin_N: Cyclin, N-t 97.1 0.0006 1.3E-08 40.3 3.2 42 1-42 47-88 (127)
18 KOG0654|consensus 96.5 0.00049 1.1E-08 48.3 -0.5 41 2-42 154-194 (359)
19 PF00382 TFIIB: Transcription 96.1 0.026 5.6E-07 30.4 5.0 47 41-87 2-48 (71)
20 KOG0835|consensus 96.1 0.026 5.7E-07 39.4 6.0 57 31-87 21-77 (367)
21 cd00043 CYCLIN Cyclin box fold 95.1 0.031 6.8E-07 30.1 3.0 42 1-42 18-59 (88)
22 PF08613 Cyclin: Cyclin; Inte 95.0 0.11 2.3E-06 32.1 5.4 52 36-87 54-110 (149)
23 smart00385 CYCLIN domain prese 93.8 0.097 2.1E-06 27.8 3.0 42 1-42 12-53 (83)
24 PRK00423 tfb transcription ini 93.7 0.2 4.3E-06 34.6 5.1 48 40-87 129-176 (310)
25 KOG2496|consensus 92.9 0.2 4.3E-06 34.8 4.0 48 40-87 63-112 (325)
26 KOG4164|consensus 92.2 0.13 2.9E-06 36.9 2.5 51 37-87 386-436 (497)
27 PRK00423 tfb transcription ini 91.1 0.76 1.6E-05 31.7 5.3 51 37-87 220-270 (310)
28 COG1405 SUA7 Transcription ini 91.1 0.74 1.6E-05 31.6 5.1 52 36-87 194-245 (285)
29 TIGR00569 ccl1 cyclin ccl1. Un 89.7 0.36 7.7E-06 33.4 2.7 42 1-42 74-115 (305)
30 PF02984 Cyclin_C: Cyclin, C-t 87.5 1.1 2.4E-05 25.6 3.5 34 53-86 20-53 (118)
31 KOG0834|consensus 78.4 1.7 3.7E-05 30.5 2.0 40 3-42 57-96 (323)
32 KOG0835|consensus 67.6 30 0.00066 24.6 6.0 36 7-42 45-80 (367)
33 PF12550 GCR1_C: Transcription 67.0 19 0.00042 19.8 5.2 51 11-64 30-80 (81)
34 KOG0794|consensus 65.6 12 0.00026 25.4 3.6 45 43-87 160-205 (264)
35 COG5086 Uncharacterized conser 64.9 4.3 9.3E-05 26.4 1.4 39 33-76 25-63 (218)
36 COG1405 SUA7 Transcription ini 62.9 26 0.00057 24.2 5.0 51 37-87 101-151 (285)
37 KOG1597|consensus 58.6 26 0.00056 24.5 4.3 46 42-87 113-158 (308)
38 KOG1598|consensus 46.0 60 0.0013 24.5 4.8 47 40-87 74-120 (521)
39 PF14502 HTH_41: Helix-turn-he 40.6 52 0.0011 16.6 2.9 23 41-63 10-32 (48)
40 KOG1674|consensus 37.0 44 0.00096 22.0 2.8 32 36-67 78-109 (218)
41 PF13591 MerR_2: MerR HTH fami 36.7 64 0.0014 17.8 3.1 27 39-65 47-73 (84)
42 PF09246 PHAT: PHAT; InterPro 36.4 60 0.0013 19.2 2.9 26 48-73 69-94 (108)
43 PF14823 Sirohm_synth_C: Siroh 35.6 76 0.0017 17.1 4.0 32 37-68 32-66 (70)
44 smart00099 btg1 tob/btg1 famil 35.2 36 0.00079 20.1 1.9 26 54-79 5-31 (108)
45 PF03540 TFIID_30kDa: Transcri 35.1 62 0.0013 16.5 2.6 25 59-83 6-30 (51)
46 KOG0326|consensus 31.4 18 0.0004 26.0 0.3 32 50-81 264-298 (459)
47 cd04438 DEP_dishevelled DEP (D 30.9 55 0.0012 18.3 2.2 10 34-43 33-42 (84)
48 COG5499 Predicted transcriptio 30.7 47 0.001 19.9 1.9 30 25-54 89-118 (120)
49 cd04441 DEP_2_DEP6 DEP (Dishev 29.6 70 0.0015 18.0 2.4 29 34-67 36-64 (85)
50 cd04443 DEP_GPR155 DEP (Dishev 27.1 89 0.0019 17.4 2.6 10 34-43 34-43 (83)
51 PF02796 HTH_7: Helix-turn-hel 25.4 76 0.0016 15.1 1.9 17 40-56 24-40 (45)
52 cd04440 DEP_2_P-Rex DEP (Dishe 24.8 93 0.002 17.9 2.4 31 32-67 39-69 (93)
53 cd04449 DEP_DEPDC5-like DEP (D 24.4 1.1E+02 0.0023 16.8 2.6 33 31-67 30-62 (83)
54 cd04437 DEP_Epac DEP (Dishevel 24.1 90 0.002 18.9 2.4 31 33-67 33-63 (125)
55 PF12921 ATP13: Mitochondrial 23.9 1.4E+02 0.003 17.8 3.2 27 44-71 59-85 (126)
56 PF15087 DUF4551: Protein of u 22.8 1.7E+02 0.0038 22.6 4.0 47 2-49 367-413 (617)
57 cd04439 DEP_1_P-Rex DEP (Dishe 22.6 1E+02 0.0022 17.0 2.3 10 34-43 32-41 (81)
58 TIGR00873 gnd 6-phosphoglucona 22.3 1.5E+02 0.0033 21.8 3.7 32 36-67 400-431 (467)
59 COG0851 MinE Septum formation 22.3 32 0.00068 19.7 0.1 22 59-80 2-27 (88)
60 PF02899 Phage_int_SAM_1: Phag 20.9 1.4E+02 0.0031 15.4 5.1 17 49-65 61-77 (84)
61 cd04442 DEP_1_DEP6 DEP (Dishev 20.4 1.3E+02 0.0029 16.7 2.4 29 34-67 32-60 (82)
62 PF13384 HTH_23: Homeodomain-l 20.1 1E+02 0.0023 14.6 1.8 22 40-64 20-41 (50)
63 PF13542 HTH_Tnp_ISL3: Helix-t 20.0 1.3E+02 0.0027 14.4 2.8 22 40-64 30-51 (52)
No 1
>KOG0655|consensus
Probab=99.82 E-value=1.3e-20 Score=128.04 Aligned_cols=85 Identities=33% Similarity=0.545 Sum_probs=77.0
Q ss_pred cchhHHHHHHHHHHhcccccccc-cccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-CCCCccchHHHHH
Q psy14722 3 NETLHLAINYVDRFLSLMSVVRS-KLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL-MSVVRSKLQLLGT 80 (87)
Q Consensus 3 ~e~~~l~~~~~d~~l~~~~~~~~-~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~-~~~~~~~lqll~~ 80 (87)
.|++-+..+-.++|+....+..| +...+.+|++++||++|||+-+++-.||||+|++|+||||.. .++.++++||+|+
T Consensus 114 ~eVW~lM~kkee~~l~~~~~l~qHpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~kt~lQLIGi 193 (408)
T KOG0655|consen 114 KEVWLLMLKKEERYLRDKHFLEQHPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSKTNLQLIGI 193 (408)
T ss_pred HHHHHHHHccchhhhhhhHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhH
Confidence 47788888999999988877654 557799999999999999999999999999999999999988 5788999999999
Q ss_pred HHHHhcC
Q psy14722 81 TALFVAS 87 (87)
Q Consensus 81 ~~l~iAs 87 (87)
+||||||
T Consensus 194 tsLFIAA 200 (408)
T KOG0655|consen 194 TSLFIAA 200 (408)
T ss_pred HHHHHHH
Confidence 9999996
No 2
>KOG0653|consensus
Probab=99.76 E-value=1.4e-18 Score=121.58 Aligned_cols=65 Identities=38% Similarity=0.547 Sum_probs=61.1
Q ss_pred ccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHH-hcC
Q psy14722 23 VRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALF-VAS 87 (87)
Q Consensus 23 ~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~-iAs 87 (87)
..+...+..+|++++||++||+.+|++.+||+++||+++||||++.+++++++||+|++||+ ||+
T Consensus 148 ~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~ 213 (391)
T KOG0653|consen 148 ISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIAC 213 (391)
T ss_pred cccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHH
Confidence 46777888999999999999999999999999999999999999999999999999999966 996
No 3
>KOG0656|consensus
Probab=99.76 E-value=4.1e-18 Score=116.58 Aligned_cols=85 Identities=31% Similarity=0.389 Sum_probs=76.6
Q ss_pred cchhHHHHHHHHHHhccccc--ccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccc---hHH
Q psy14722 3 NETLHLAINYVDRFLSLMSV--VRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSK---LQL 77 (87)
Q Consensus 3 ~e~~~l~~~~~d~~l~~~~~--~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~---lql 77 (87)
+|.+.-.+..++.+.+..++ .-++..++.+|.+.++||.+||.+.++.++++++|+||+|||++..++++.+ +||
T Consensus 46 e~~i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQL 125 (335)
T KOG0656|consen 46 ERVLANLLEKEEQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQL 125 (335)
T ss_pred HHHHHHHHHHHHHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHH
Confidence 45567777888888888863 3477789999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHhcC
Q psy14722 78 LGTTALFVAS 87 (87)
Q Consensus 78 l~~~~l~iAs 87 (87)
+|++||+|||
T Consensus 126 lAvaCLsLAs 135 (335)
T KOG0656|consen 126 LAVACLSLAS 135 (335)
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 4
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=99.69 E-value=3.9e-17 Score=115.13 Aligned_cols=84 Identities=32% Similarity=0.416 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHH
Q psy14722 4 ETLHLAINYVDRFLSLMSV-VRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTA 82 (87)
Q Consensus 4 e~~~l~~~~~d~~l~~~~~-~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~ 82 (87)
|.+..-..++..+++...+ .+++....++|.++++|+.|++.+|++.++|+++|++++||||+...++-+++|++|++|
T Consensus 183 ~Ife~l~k~e~~~lp~~~yl~kq~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l~k~QLvg~s~ 262 (440)
T COG5024 183 DIFEYLLKLELIDLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVGISA 262 (440)
T ss_pred HHHHHHHHHHHHhcCcHHHHhhcchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 4455666666677766654 456667779999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy14722 83 LFVAS 87 (87)
Q Consensus 83 l~iAs 87 (87)
|||||
T Consensus 263 LfIa~ 267 (440)
T COG5024 263 LFIAS 267 (440)
T ss_pred HHHHH
Confidence 99996
No 5
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.57 E-value=2.4e-14 Score=85.58 Aligned_cols=77 Identities=35% Similarity=0.420 Sum_probs=64.6
Q ss_pred HHHHHHhcccccc-cccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 11 NYVDRFLSLMSVV-RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 11 ~~~d~~l~~~~~~-~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
.-+.++.+...+. +++.++...|..+++|+.+++..++++++|++.|++++|||+.+.++.+.+++++|++|+++|+
T Consensus 8 ~~e~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~ 85 (127)
T PF00134_consen 8 EKELKYKPNPDYLEQQPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLAS 85 (127)
T ss_dssp HHHHHTTCCTTHGTGTSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHH
T ss_pred HHHHHHCcCccccccChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhh
Confidence 3445554444444 3556778999999999999999999999999999999999999999999999999999999995
No 6
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.16 E-value=8.9e-11 Score=65.01 Aligned_cols=55 Identities=33% Similarity=0.423 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 33 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 33 r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
|....+|+.+++..+++++++.++|.+++||++....+.+.+++++|++|+++|+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~ 56 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAA 56 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999995
No 7
>KOG0654|consensus
Probab=99.12 E-value=1.5e-11 Score=85.16 Aligned_cols=63 Identities=41% Similarity=0.611 Sum_probs=61.3
Q ss_pred ccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 25 SKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 25 ~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
|..+++.+|.++++|.+|+++++++..++++++++.+|||++...+.++++|++|++|++||+
T Consensus 129 q~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~~~~~~k~ql~g~s~m~I~s 191 (359)
T KOG0654|consen 129 QADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYKEVNKQKLQLVGISAMLIAS 191 (359)
T ss_pred ecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHHHhccCccHHHHHHHhCcccceeec
Confidence 788999999999999999999999999999999999999999999999999999999999986
No 8
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.03 E-value=4.3e-10 Score=61.68 Aligned_cols=50 Identities=32% Similarity=0.513 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 38 ASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 38 ~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
+|+.+++..+++++++.++|++++|+++...++.+..++.+|++|+++|+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~ 50 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAA 50 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999877778999999999999985
No 9
>KOG0656|consensus
Probab=98.80 E-value=1.1e-08 Score=70.66 Aligned_cols=71 Identities=34% Similarity=0.505 Sum_probs=59.0
Q ss_pred CcchhHHHHHHHHHHhccccccccc---ccChhhHHHHHHHHHHHH------------HhhhcchhHHH-----------
Q psy14722 2 HNETLHLAINYVDRFLSLMSVVRSK---LQLLGTTALFVASIIEVA------------EEYKMHNETLH----------- 55 (87)
Q Consensus 2 ~~e~~~l~~~~~d~~l~~~~~~~~~---~~~~~~r~~li~w~~ev~------------~~~~l~~~tl~----------- 55 (87)
.+||++||+||+|||++..++.+.+ .|+.+..|+.++.+++.- -++-+.++|+.
T Consensus 95 ~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~ 174 (335)
T KOG0656|consen 95 EPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLK 174 (335)
T ss_pred chHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhcc
Confidence 5799999999999999999999999 999999999999988722 23455555542
Q ss_pred ------HHHHHHHHHhccCCCCc
Q psy14722 56 ------LAINYVDRFLSLMSVVR 72 (87)
Q Consensus 56 ------lav~~~Dr~L~~~~~~~ 72 (87)
.+++|+|+|+++.+...
T Consensus 175 Wrl~aVTP~sF~~~fl~ki~~~~ 197 (335)
T KOG0656|consen 175 WRLRAVTPFSFIDHFLSKISQKD 197 (335)
T ss_pred ccccCCCchHHHHHHHHHcCccc
Confidence 48899999999987654
No 10
>KOG0655|consensus
Probab=98.66 E-value=3.4e-09 Score=72.82 Aligned_cols=42 Identities=45% Similarity=0.822 Sum_probs=39.6
Q ss_pred CCcchhHHHHHHHHHHhccc-ccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLM-SVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~-~~~~~~~~~~~~r~~li~w~~e 42 (87)
||+||||||++|+|||+... ++.+...|+.|..+.+|+.++|
T Consensus 161 LHRETFyLAvDy~DRyl~t~~~v~kt~lQLIGitsLFIAAK~E 203 (408)
T KOG0655|consen 161 LHRETFYLAVDYFDRYLETQVEVSKTNLQLIGITSLFIAAKLE 203 (408)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHh
Confidence 68999999999999999876 8889999999999999999988
No 11
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=98.51 E-value=3.6e-07 Score=62.63 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 31 GTTALFVASIIEVAEEYK--MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 31 ~~r~~li~w~~ev~~~~~--l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
..|......+.+++..++ ++++|...|+.|++||....++...+.++++++|+++||
T Consensus 54 ~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~ 112 (305)
T TIGR00569 54 DLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLAC 112 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHH
Confidence 567777888999999999 999999999999999999999999999999999999996
No 12
>KOG0653|consensus
Probab=98.10 E-value=2.1e-06 Score=60.56 Aligned_cols=42 Identities=50% Similarity=0.685 Sum_probs=38.5
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHH-HHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALF-VASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~l-i~w~~e 42 (87)
|.+||+||++|++|||++...+.+.+.|+.|..+++ |+-+.|
T Consensus 174 L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~E 216 (391)
T KOG0653|consen 174 LSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYE 216 (391)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhh
Confidence 568999999999999999999999999999999977 887764
No 13
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=97.85 E-value=1.5e-05 Score=56.98 Aligned_cols=42 Identities=55% Similarity=0.682 Sum_probs=39.9
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.+||+|+++|++|||++...+.-++.|+.|..+.+|+.++|
T Consensus 229 llpeTL~lainiiDrfLs~~~v~l~k~QLvg~s~LfIa~K~E 270 (440)
T COG5024 229 LLPETLFLAINIIDRFLSSRVVSLEKYQLVGISALFIASKYE 270 (440)
T ss_pred ccchHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhHh
Confidence 578999999999999999999999999999999999998886
No 14
>KOG0834|consensus
Probab=97.71 E-value=8e-05 Score=51.57 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 30 LGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 30 ~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
...|.....|+.+++.+++++..|+..|+.++.||....+..+...+.+|++|+++|+
T Consensus 36 ~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAg 93 (323)
T KOG0834|consen 36 LRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAG 93 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999995
No 15
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00012 Score=50.09 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 31 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 31 ~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
+.|-.-..|+..+|..++++..++-.|+.+++||..+.++.+..++-++.+|+++|+
T Consensus 43 ~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~ 99 (297)
T COG5333 43 NLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLAC 99 (297)
T ss_pred hHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeee
Confidence 455556678889999999999999999999999999999999999999999999986
No 16
>KOG0794|consensus
Probab=97.34 E-value=0.00057 Score=45.45 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 39 SIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 39 w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
-+..++.+.++.+.++..|+.++.||..+.+...-.+.+++.||+++||
T Consensus 47 ~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAc 95 (264)
T KOG0794|consen 47 VIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLAC 95 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHh
Confidence 3556888899999999999999999999999988899999999999996
No 17
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=97.13 E-value=0.0006 Score=40.28 Aligned_cols=42 Identities=57% Similarity=0.735 Sum_probs=37.2
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.++|++.|+.|+|||+...+..+.+.+..+..|++++.+.+
T Consensus 47 l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~ 88 (127)
T PF00134_consen 47 LSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKME 88 (127)
T ss_dssp -BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhh
Confidence 467899999999999999999888999999999999998876
No 18
>KOG0654|consensus
Probab=96.52 E-value=0.00049 Score=48.30 Aligned_cols=41 Identities=51% Similarity=0.705 Sum_probs=37.6
Q ss_pred CcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 2 HNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 2 ~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
..|+|||++++.|||++.....+++.|+.|..++.|.-+.+
T Consensus 154 ~~e~l~ls~~~~drfl~~~~~~~~k~ql~g~s~m~I~sk~e 194 (359)
T KOG0654|consen 154 TFETLYLSVNYRDRFLSYKEVNKQKLQLVGISAMLIASKYE 194 (359)
T ss_pred hhhheeecHHHHHHHhccCccHHHHHHHhCcccceeeccch
Confidence 46899999999999999999999999999999998887665
No 19
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=96.10 E-value=0.026 Score=30.45 Aligned_cols=47 Identities=4% Similarity=0.056 Sum_probs=37.8
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 41 IEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 41 ~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
-++|+.++++.++.-.|..+.++-....-.......-++++|+++|+
T Consensus 2 ~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~ac 48 (71)
T PF00382_consen 2 PRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLAC 48 (71)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHH
T ss_pred hHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 36889999999999999999999888766666778999999999985
No 20
>KOG0835|consensus
Probab=96.10 E-value=0.026 Score=39.41 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 31 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 31 ~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
..|.+-++|+-+-+--++|+..+...+-.++-||.-..+..+-++..++.+|++|||
T Consensus 21 el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LAS 77 (367)
T KOG0835|consen 21 ELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLAS 77 (367)
T ss_pred HHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHh
Confidence 456677899999999999999999999999999999999999999999999999997
No 21
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=95.11 E-value=0.031 Score=30.06 Aligned_cols=42 Identities=40% Similarity=0.586 Sum_probs=36.4
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+++.+++..+.|+++...+..+.+.+..+..++.++.+.+
T Consensus 18 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~ 59 (88)
T cd00043 18 LSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVE 59 (88)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHc
Confidence 357899999999999999998888888888999999887654
No 22
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=94.97 E-value=0.11 Score=32.10 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhc---c--CCCCccchHHHHHHHHHhcC
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLS---L--MSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~---~--~~~~~~~lqll~~~~l~iAs 87 (87)
+.+++.++....+++++++..|..|+||+.. . ..+.+...+-+=++|+.+|+
T Consensus 54 i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~ 110 (149)
T PF08613_consen 54 IRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILAS 110 (149)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHH
Confidence 7788889999999999999999999999999 2 33556677888888888874
No 23
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=93.80 E-value=0.097 Score=27.78 Aligned_cols=42 Identities=38% Similarity=0.589 Sum_probs=34.9
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+++.+++..+.|+++....+.+.+.+..+..++.++-..+
T Consensus 12 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~ 53 (83)
T smart00385 12 LDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTE 53 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 357899999999999999777777777888888888886654
No 24
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=93.71 E-value=0.2 Score=34.56 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 40 ~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
+-+++..++++..+.-.|..++.++.....+.......++++|+++|+
T Consensus 129 I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiAC 176 (310)
T PRK00423 129 LDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAAC 176 (310)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 456999999999999999999999999877777888999999999985
No 25
>KOG2496|consensus
Probab=92.95 E-value=0.2 Score=34.76 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=39.1
Q ss_pred HHHHHHhh--hcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 40 IIEVAEEY--KMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 40 ~~ev~~~~--~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
.++.+.++ .++..+.-.|+.|+.||.-..++..-....|..||+++|+
T Consensus 63 l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvme~~pk~I~~tc~flA~ 112 (325)
T KOG2496|consen 63 LVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVMEYSPKIIMATCFFLAC 112 (325)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHh
Confidence 34445555 5567778899999999999988888889999999999985
No 26
>KOG4164|consensus
Probab=92.21 E-value=0.13 Score=36.88 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 37 VASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 37 i~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
-.=|.++....+++.-|+..|..|++...-+..+.|.+-.|.|-+|+.+|+
T Consensus 386 KREMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLlaa 436 (497)
T KOG4164|consen 386 KREMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLAA 436 (497)
T ss_pred HHHHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 334667888899999999999999999999999999999999999999985
No 27
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=91.14 E-value=0.76 Score=31.71 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 37 VASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 37 i~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
-+.+...+..++++.++...|..++.+.....-.......-++++|+++||
T Consensus 220 ~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~ 270 (310)
T PRK00423 220 IDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIAS 270 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 356667888889998888888888888776654566788999999999985
No 28
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=91.09 E-value=0.74 Score=31.65 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
-.+++-..+.+++++.++--.|..+++..............-++++|+++||
T Consensus 194 p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as 245 (285)
T COG1405 194 PSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLAS 245 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHH
Confidence 4556668899999999999999999999988877777788999999999986
No 29
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=89.69 E-value=0.36 Score=33.44 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=36.5
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|..-|+.|++||+..+++..-+....+..|++++-++|
T Consensus 74 Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvE 115 (305)
T TIGR00569 74 MPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVE 115 (305)
T ss_pred CCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhcc
Confidence 467899999999999999999988888888888888887766
No 30
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=87.54 E-value=1.1 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHHHhc
Q psy14722 53 TLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVA 86 (87)
Q Consensus 53 tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iA 86 (87)
+..++-.++|..+.....-.-....+|++|+++|
T Consensus 20 ~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA 53 (118)
T PF02984_consen 20 VRNLARYLLELSLLDYEFLQYPPSVIAAAAILLA 53 (118)
T ss_dssp HHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHH
Confidence 3444445555444444444445566666666665
No 31
>KOG0834|consensus
Probab=78.42 E-value=1.7 Score=30.46 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 3 NETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 3 ~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
.-|..-|+-|..||....+..+....+.+..|++++-++|
T Consensus 57 ~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvE 96 (323)
T KOG0834|consen 57 QKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVE 96 (323)
T ss_pred ccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcc
Confidence 4456677888888888888887777777888887775555
No 32
>KOG0835|consensus
Probab=67.64 E-value=30 Score=24.65 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 7 HLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 7 ~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+-++-++-||+-..++.+-+.-...+.|.+++.++|
T Consensus 45 atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiE 80 (367)
T KOG0835|consen 45 ATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIE 80 (367)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhc
Confidence 344445555555555555444445555555554443
No 33
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=66.97 E-value=19 Score=19.77 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHhcccccccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q psy14722 11 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRF 64 (87)
Q Consensus 11 ~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~ 64 (87)
.++++|-+.=............|..+++++..+...-|++.+ -|+..+|.+
T Consensus 30 ~le~~yG~~WR~~~~~~~~y~rRK~Ii~~I~~l~~~~g~~~~---~ai~~le~~ 80 (81)
T PF12550_consen 30 SLEKKYGSKWRRDSKERRTYSRRKVIIDFIERLANERGISEE---EAIEILEEI 80 (81)
T ss_pred HHHHHhChhhccCcccchhHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHhc
Confidence 444555533222333446788999999999888888888766 667777754
No 34
>KOG0794|consensus
Probab=65.63 E-value=12 Score=25.40 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHhhhc-chhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 43 VAEEYKM-HNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 43 v~~~~~l-~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
.....|. +..-++++-++++-.+...-.---....+|.+|++||+
T Consensus 160 ~~qd~gi~d~~~l~~~W~ivNDSyr~Dl~Ll~PPh~IalAcl~Ia~ 205 (264)
T KOG0794|consen 160 FVQDMGINDQKLLQLAWSIVNDSYRMDLCLLYPPHQIALACLYIAC 205 (264)
T ss_pred HHHHhcccchhhhhhhHhhhcchhhcceeeecCHHHHHHHHHHHHH
Confidence 3334444 33456666666655444422223346889999999986
No 35
>COG5086 Uncharacterized conserved protein [Function unknown]
Probab=64.89 E-value=4.3 Score=26.37 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchH
Q psy14722 33 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQ 76 (87)
Q Consensus 33 r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lq 76 (87)
-....+|.-| +..++-++.|..++||+|...+...+.++
T Consensus 25 ~DL~~~w~NE-----r~tp~LLPya~~li~r~LdrIs~q~e~v~ 63 (218)
T COG5086 25 NDLILAWQNE-----RSTPRLLPYALHLIDRFLDRISEQTEHVK 63 (218)
T ss_pred HHHHHHHhcc-----ccCccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 3566778766 77888899999999999998776666665
No 36
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=62.95 E-value=26 Score=24.17 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 37 VASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 37 i~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
..-+-.++..++++..+.-.|..++-..+.+.-+.....+-+.++|+++|+
T Consensus 101 ~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~ac 151 (285)
T COG1405 101 LEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAAC 151 (285)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHH
Confidence 334446888889999888889999988888877777788999999999985
No 37
>KOG1597|consensus
Probab=58.64 E-value=26 Score=24.50 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=34.1
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 42 EVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 42 ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
.+++..+|+.-.--.|-.++.++-......-+...-+.++|++||+
T Consensus 113 ~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiAC 158 (308)
T KOG1597|consen 113 AMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIAC 158 (308)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHH
Confidence 4667777776555567777777775556666788999999999985
No 38
>KOG1598|consensus
Probab=46.02 E-value=60 Score=24.47 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=39.5
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 40 ~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
+-+++..+++.. ....|++++.--+...=.+-...+.|-.+|+++++
T Consensus 74 i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vc 120 (521)
T KOG1598|consen 74 IEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVC 120 (521)
T ss_pred HHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Confidence 446888888888 78899999999999877777788889999999864
No 39
>PF14502 HTH_41: Helix-turn-helix domain
Probab=40.58 E-value=52 Score=16.62 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHhhhcchhHHHHHHHHHHH
Q psy14722 41 IEVAEEYKMHNETLHLAINYVDR 63 (87)
Q Consensus 41 ~ev~~~~~l~~~tl~lav~~~Dr 63 (87)
.|.+++|+++.-|.+-|+.++.-
T Consensus 10 ~e~~~~~~vs~GtiQ~Alk~Le~ 32 (48)
T PF14502_consen 10 SEYSEKFGVSRGTIQNALKFLEE 32 (48)
T ss_pred HHHHHHhCcchhHHHHHHHHHHH
Confidence 36788999999999999988764
No 40
>KOG1674|consensus
Probab=37.00 E-value=44 Score=22.02 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
.-+.+.++....+.+++++..|..++||+...
T Consensus 78 i~~yleri~k~~~~s~~~lv~al~Yldr~~~~ 109 (218)
T KOG1674|consen 78 IRQYLERIFKYSKCSPECLVLALVYLDRFVKQ 109 (218)
T ss_pred hHHHHHHHHHHhcCCchhhhhhhhhhhhhhhh
Confidence 34455567777899999999999999999997
No 41
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=36.75 E-value=64 Score=17.76 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHh
Q psy14722 39 SIIEVAEEYKMHNETLHLAINYVDRFL 65 (87)
Q Consensus 39 w~~ev~~~~~l~~~tl~lav~~~Dr~L 65 (87)
-+...+.+++++.+...+..+++|+.=
T Consensus 47 ~~~rL~~Dl~in~~gi~lil~LLd~i~ 73 (84)
T PF13591_consen 47 RIRRLHRDLGINLEGIALILDLLDRIE 73 (84)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345688999999999999999999853
No 42
>PF09246 PHAT: PHAT; InterPro: IPR015327 The PHAT (pseudo-HEAT analogous topology) domain assumes a structure consisting of a layer of three parallel helices packed against a layer of two antiparallel helices, into a cylindrical shaped five-helix bundle. It is found in the RNA-binding protein Smaug, where it is essential for high-affinity RNA binding []. ; PDB: 1OXJ_A.
Probab=36.35 E-value=60 Score=19.19 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.2
Q ss_pred hcchhHHHHHHHHHHHHhccCCCCcc
Q psy14722 48 KMHNETLHLAINYVDRFLSLMSVVRS 73 (87)
Q Consensus 48 ~l~~~tl~lav~~~Dr~L~~~~~~~~ 73 (87)
..+.+++...+.++||-++.-.....
T Consensus 69 ~qdde~L~v~~wIler~lhndaF~~~ 94 (108)
T PF09246_consen 69 PQDDEILCVFMWILERVLHNDAFTNH 94 (108)
T ss_dssp GG-HHHHHHHHHHHHHHHT-GGGGGG
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhhH
Confidence 44678999999999999998655443
No 43
>PF14823 Sirohm_synth_C: Sirohaem biosynthesis protein C-terminal; PDB: 1KYQ_B.
Probab=35.58 E-value=76 Score=17.13 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhcch---hHHHHHHHHHHHHhccC
Q psy14722 37 VASIIEVAEEYKMHN---ETLHLAINYVDRFLSLM 68 (87)
Q Consensus 37 i~w~~ev~~~~~l~~---~tl~lav~~~Dr~L~~~ 68 (87)
..||..||+.+++.. -+-.--.++++.|-+..
T Consensus 32 M~Wm~~vcd~w~l~~l~~l~~~d~~~Ll~~y~~~~ 66 (70)
T PF14823_consen 32 MRWMSQVCDYWSLEELAELDDEDMENLLDFYWSNK 66 (70)
T ss_dssp HHHHHHHHHHHHHHHGGGB-HHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcccCHHHHHHCCHHHHHHHHHHhhccC
Confidence 379999999997754 22233457777776653
No 44
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=35.18 E-value=36 Score=20.13 Aligned_cols=26 Identities=12% Similarity=0.443 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcc-CCCCccchHHHH
Q psy14722 54 LHLAINYVDRFLSL-MSVVRSKLQLLG 79 (87)
Q Consensus 54 l~lav~~~Dr~L~~-~~~~~~~lqll~ 79 (87)
+..|++|+.+||.+ ..+++..+...|
T Consensus 5 I~~av~Fl~~~l~~~~~l~~~~v~~F~ 31 (108)
T smart00099 5 IAAAVNFITSLLRKHNKLSKRRVEIFA 31 (108)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45688999999966 356666665554
No 45
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=35.11 E-value=62 Score=16.52 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHhccCCCCccchHHHHHHHH
Q psy14722 59 NYVDRFLSLMSVVRSKLQLLGTTAL 83 (87)
Q Consensus 59 ~~~Dr~L~~~~~~~~~lqll~~~~l 83 (87)
.++|.||.+.++...+..+....+|
T Consensus 6 ~v~~~yL~~~G~~~~D~rv~RLvSL 30 (51)
T PF03540_consen 6 EVTDYYLERSGFQTSDPRVKRLVSL 30 (51)
T ss_pred HHHHHHHHHCCCCCCCHhHHHHHHH
Confidence 4678899988777666555554443
No 46
>KOG0326|consensus
Probab=31.44 E-value=18 Score=25.97 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=21.7
Q ss_pred chhHHHHHH-HHHHHHhcc-CCCC-ccchHHHHHH
Q psy14722 50 HNETLHLAI-NYVDRFLSL-MSVV-RSKLQLLGTT 81 (87)
Q Consensus 50 ~~~tl~lav-~~~Dr~L~~-~~~~-~~~lqll~~~ 81 (87)
-..||++.| +|+||+|.+ +.+. .+++.+.|++
T Consensus 264 ySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~Gvt 298 (459)
T KOG0326|consen 264 YSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVT 298 (459)
T ss_pred EecccchhHHHHHHHhccCcceeehhhhhhhcchh
Confidence 346677666 899999998 4443 4566666665
No 47
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=30.87 E-value=55 Score=18.27 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q psy14722 34 ALFVASIIEV 43 (87)
Q Consensus 34 ~~li~w~~ev 43 (87)
..+++|+++-
T Consensus 33 sdlVdWL~~~ 42 (84)
T cd04438 33 SDLVDWLLSH 42 (84)
T ss_pred hHHHHHHHHh
Confidence 4599999873
No 48
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=30.72 E-value=47 Score=19.88 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=24.8
Q ss_pred ccccChhhHHHHHHHHHHHHHhhhcchhHH
Q psy14722 25 SKLQLLGTTALFVASIIEVAEEYKMHNETL 54 (87)
Q Consensus 25 ~~~~~~~~r~~li~w~~ev~~~~~l~~~tl 54 (87)
-+.++.+.|+.-++-+...+..||++.+.+
T Consensus 89 vS~iL~~rraLTle~ikkL~q~~gIpa~~l 118 (120)
T COG5499 89 VSNILSGRRALTLEHIKKLHQRFGIPADVL 118 (120)
T ss_pred HHHHHhhhhHhhHHHHHHHHHHhCcCHHHh
Confidence 355778889999999989999999988765
No 49
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=29.58 E-value=70 Score=18.00 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 34 ALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 34 ~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
..+++|+++-. ...+-.-|+.+--..+..
T Consensus 36 sElVdWL~~~~-----~~~sR~eAv~lgq~Ll~~ 64 (85)
T cd04441 36 SEFIDWLLQEG-----EAESRREAVQLCRRLLEH 64 (85)
T ss_pred hHHHHHHHHcC-----CCCCHHHHHHHHHHHHHC
Confidence 56999999842 234455566655555544
No 50
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=27.15 E-value=89 Score=17.38 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q psy14722 34 ALFVASIIEV 43 (87)
Q Consensus 34 ~~li~w~~ev 43 (87)
..+|+|+.+.
T Consensus 34 selVdWL~~~ 43 (83)
T cd04443 34 CDLVSWLIEV 43 (83)
T ss_pred HHHHHHHHHc
Confidence 5699999874
No 51
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=25.45 E-value=76 Score=15.14 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.3
Q ss_pred HHHHHHhhhcchhHHHH
Q psy14722 40 IIEVAEEYKMHNETLHL 56 (87)
Q Consensus 40 ~~ev~~~~~l~~~tl~l 56 (87)
+.+++..++++..|++-
T Consensus 24 i~~IA~~~gvsr~TvyR 40 (45)
T PF02796_consen 24 IAEIAKQFGVSRSTVYR 40 (45)
T ss_dssp HHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 55799999999999873
No 52
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=24.83 E-value=93 Score=17.86 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 32 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 32 ~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
.=+.+++|+++.. . ..|-.-|+.+-.+.+..
T Consensus 39 vGsElVdWLi~~g-~----~~tR~eAv~~gq~Ll~~ 69 (93)
T cd04440 39 PASKLVDWLLAQG-D----CRTREEAVILGVGLCNN 69 (93)
T ss_pred chhHHHHHHHHcC-C----CCCHHHHHHHHHHHHhC
Confidence 3356999999852 1 22445566655555544
No 53
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=24.40 E-value=1.1e+02 Score=16.82 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 31 GTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 31 ~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
..-+.+++|+.+-... ..+..-|+.+-.+.+..
T Consensus 30 F~G~e~VdWL~~~~~~----~~~r~eAv~lgq~Ll~~ 62 (83)
T cd04449 30 FIGSEAVSWLINNFED----VDTREEAVELGQELMNE 62 (83)
T ss_pred eEhHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHC
Confidence 3456799999873221 33444555555554444
No 54
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=24.06 E-value=90 Score=18.88 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 33 TALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 33 r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
=..+++|+++..... .+-.-|+.+-...+..
T Consensus 33 GsElVdWLl~~~~~v----~sR~eAv~lgq~Ll~~ 63 (125)
T cd04437 33 GTELVDWLLQQSPCV----QSRSQAVGMWQVLLEE 63 (125)
T ss_pred cHHHHHHHHHcCCCC----CCHHHHHHHHHHHHhC
Confidence 356999998854211 2334455544444443
No 55
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=23.90 E-value=1.4e+02 Score=17.84 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHhhhcchhHHHHHHHHHHHHhccCCCC
Q psy14722 44 AEEYKMHNETLHLAINYVDRFLSLMSVV 71 (87)
Q Consensus 44 ~~~~~l~~~tl~lav~~~Dr~L~~~~~~ 71 (87)
...|+...+ +..|+.++|.|...++++
T Consensus 59 v~sf~~n~~-i~~al~~vd~fs~~Y~I~ 85 (126)
T PF12921_consen 59 VHSFGYNGD-IFSALKLVDFFSRKYPIP 85 (126)
T ss_pred HHHHHhccc-HHHHHHHHHHHHHHcCCC
Confidence 334444444 779999999999998765
No 56
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=22.82 E-value=1.7e+02 Score=22.63 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=34.8
Q ss_pred CcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHhhhc
Q psy14722 2 HNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKM 49 (87)
Q Consensus 2 ~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~ev~~~~~l 49 (87)
++|-||+.++=+.+|++... .++..|+...|+--+...++|.+-+++
T Consensus 367 s~DLf~Flv~~L~eyLp~s~-~~~~~q~~~qrADeL~~~i~i~qtL~l 413 (617)
T PF15087_consen 367 SSDLFYFLVQTLHEYLPESR-SKNGLQNKSQRADELELCILIIQTLGL 413 (617)
T ss_pred ChhHHHHHHHHHHHhcccCc-CccccccccchHHHHHHHHHHHHHHHH
Confidence 46889999999999998875 556667777777777776666655543
No 57
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.59 E-value=1e+02 Score=17.03 Aligned_cols=10 Identities=30% Similarity=0.580 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q psy14722 34 ALFVASIIEV 43 (87)
Q Consensus 34 ~~li~w~~ev 43 (87)
..+++|+++.
T Consensus 32 selVdWL~~~ 41 (81)
T cd04439 32 NEFVSWLLEI 41 (81)
T ss_pred HHHHHHHHHc
Confidence 5699999874
No 58
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=22.34 E-value=1.5e+02 Score=21.84 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
-..|.+..+-+.+++.+++..|.+|+|+|-+.
T Consensus 400 ~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~ 431 (467)
T TIGR00873 400 GWRRVVALAIEYGIPVPAFSAALSFYDGYRTA 431 (467)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 44688888888999999999999999999985
No 59
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=22.26 E-value=32 Score=19.67 Aligned_cols=22 Identities=27% Similarity=0.390 Sum_probs=14.5
Q ss_pred HHHHHHhccC----CCCccchHHHHH
Q psy14722 59 NYVDRFLSLM----SVVRSKLQLLGT 80 (87)
Q Consensus 59 ~~~Dr~L~~~----~~~~~~lqll~~ 80 (87)
+++|.|.++. ++.+++||++-+
T Consensus 2 sl~dff~~r~~~Sa~~AkeRLQiilA 27 (88)
T COG0851 2 SLFDFFFSRKKNSAETAKERLQLILA 27 (88)
T ss_pred cHHHHHHhcCCCcHHHHHHHHHHhhh
Confidence 5788888665 344677887643
No 60
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=20.92 E-value=1.4e+02 Score=15.44 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=8.5
Q ss_pred cchhHHHHHHHHHHHHh
Q psy14722 49 MHNETLHLAINYVDRFL 65 (87)
Q Consensus 49 l~~~tl~lav~~~Dr~L 65 (87)
.++.|....++.+-.|.
T Consensus 61 ~s~~T~~~~~~alr~f~ 77 (84)
T PF02899_consen 61 LSPSTINRRLSALRAFF 77 (84)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 66666665555555443
No 61
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=20.35 E-value=1.3e+02 Score=16.70 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Q psy14722 34 ALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL 67 (87)
Q Consensus 34 ~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~ 67 (87)
..+++|+++-.. ..+-.-|+.+--..+..
T Consensus 32 selVdWL~~~~~-----~~sR~eAv~lgq~Ll~~ 60 (82)
T cd04442 32 KELIDWLIEHKE-----ASDRETAIKIMQKLLDH 60 (82)
T ss_pred HHHHHHHHHcCC-----CCCHHHHHHHHHHHHHC
Confidence 469999986422 23444555555555444
No 62
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=20.10 E-value=1e+02 Score=14.58 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=13.7
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHH
Q psy14722 40 IIEVAEEYKMHNETLHLAINYVDRF 64 (87)
Q Consensus 40 ~~ev~~~~~l~~~tl~lav~~~Dr~ 64 (87)
..+++..+|.+..|++ ..+.+|
T Consensus 20 ~~~ia~~lgvs~~Tv~---~w~kr~ 41 (50)
T PF13384_consen 20 IREIAKRLGVSRSTVY---RWIKRY 41 (50)
T ss_dssp HHHHHHHHTS-HHHHH---HHHT--
T ss_pred HHHHHHHHCcCHHHHH---HHHHHc
Confidence 3468888999988876 444444
No 63
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=20.04 E-value=1.3e+02 Score=14.41 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=14.5
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHH
Q psy14722 40 IIEVAEEYKMHNETLHLAINYVDRF 64 (87)
Q Consensus 40 ~~ev~~~~~l~~~tl~lav~~~Dr~ 64 (87)
+.+|+..+|++..|+. .++|+|
T Consensus 30 ~~~vA~~~~vs~~TV~---ri~~~~ 51 (52)
T PF13542_consen 30 FKDVARELGVSWSTVR---RIFDRY 51 (52)
T ss_pred HHHHHHHHCCCHHHHH---HHHHhh
Confidence 3457788888888764 555554
Done!