Query psy14722
Match_columns 87
No_of_seqs 106 out of 1073
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:59:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5q_B Gamma herpesvirus cycli 99.9 6.5E-22 2.2E-26 130.6 6.6 81 4-87 23-103 (252)
2 2f2c_A Cyclin homolog, V-cycli 99.8 2.4E-20 8.3E-25 122.7 8.1 79 9-87 26-106 (254)
3 1g3n_C V-cyclin; cyclin-depend 99.8 3.1E-20 1.1E-24 122.4 6.8 80 8-87 24-105 (257)
4 3g33_B CCND3 protein; Ser/Thr 99.8 1.4E-19 4.9E-24 122.1 7.4 83 5-87 41-125 (306)
5 2w96_A G1/S-specific cyclin-D1 99.8 5.5E-19 1.9E-23 117.2 8.7 85 3-87 25-111 (271)
6 2b9r_A Human cyclin B1; cell c 99.8 6.8E-19 2.3E-23 116.7 8.1 83 5-87 10-92 (269)
7 2cch_B Cyclin A2, cyclin-A; co 99.8 1.1E-18 3.7E-23 115.1 7.8 79 9-87 14-93 (260)
8 1w98_B Cyclin E, G1/S-specific 99.7 4.3E-18 1.5E-22 113.7 7.0 82 6-87 22-105 (283)
9 2i53_A Cyclin K; cell cycle, t 99.5 6.8E-15 2.3E-19 96.6 5.9 62 26-87 34-95 (258)
10 2ivx_A Cyclin-T2; transcriptio 99.5 1.4E-14 5E-19 95.1 5.9 60 28-87 26-85 (257)
11 2pk2_A Cyclin-T1, protein TAT; 99.5 5.2E-14 1.8E-18 96.7 5.5 60 28-87 33-92 (358)
12 1zp2_A RNA polymerase II holoe 99.4 1.9E-13 6.3E-18 88.9 6.8 71 17-87 12-83 (235)
13 3rgf_B Cyclin-C; protein kinas 99.4 3.6E-13 1.2E-17 89.9 6.2 60 28-87 38-97 (285)
14 1jkw_A Cyclin H; cell cycle, c 99.3 1.1E-11 3.6E-16 84.1 6.6 59 29-87 53-113 (323)
15 1f5q_B Gamma herpesvirus cycli 98.9 1.2E-09 4.2E-14 71.9 5.4 73 1-73 65-165 (252)
16 2f2c_A Cyclin homolog, V-cycli 98.8 2.2E-08 7.7E-13 65.5 8.8 42 1-42 68-109 (254)
17 1g3n_C V-cyclin; cyclin-depend 98.8 1.9E-08 6.5E-13 66.0 7.8 42 1-42 67-108 (257)
18 2b9r_A Human cyclin B1; cell c 98.7 5.1E-08 1.7E-12 64.4 7.2 42 1-42 54-95 (269)
19 3g33_B CCND3 protein; Ser/Thr 98.7 7.9E-08 2.7E-12 64.7 7.9 42 1-42 87-128 (306)
20 2cch_B Cyclin A2, cyclin-A; co 98.6 8.7E-08 3E-12 62.9 5.1 42 1-42 55-96 (260)
21 1w98_B Cyclin E, G1/S-specific 98.5 1.1E-07 3.9E-12 63.2 5.3 42 1-42 66-108 (283)
22 1c9b_A General transcription f 98.5 2.9E-07 1E-11 58.4 6.3 54 34-87 6-59 (207)
23 2w96_A G1/S-specific cyclin-D1 98.5 3E-07 1E-11 60.7 6.0 42 1-42 73-114 (271)
24 1zp2_A RNA polymerase II holoe 98.2 3.7E-06 1.3E-10 54.3 6.7 42 1-42 44-86 (235)
25 2i53_A Cyclin K; cell cycle, t 98.2 6.6E-06 2.3E-10 53.6 7.0 42 1-42 57-98 (258)
26 2ivx_A Cyclin-T2; transcriptio 98.1 1.2E-05 4.2E-10 52.4 6.8 42 1-42 47-88 (257)
27 3rgf_B Cyclin-C; protein kinas 97.9 1.6E-05 5.6E-10 52.8 5.3 42 1-42 59-100 (285)
28 1ais_B TFB TFIIB, protein (tra 97.9 3.9E-05 1.3E-09 48.2 6.6 54 34-87 10-63 (200)
29 1c9b_A General transcription f 97.5 0.00047 1.6E-08 43.5 7.2 42 1-42 21-62 (207)
30 2pk2_A Cyclin-T1, protein TAT; 97.2 0.00017 5.8E-09 49.4 2.9 42 1-42 54-95 (358)
31 1jkw_A Cyclin H; cell cycle, c 96.8 0.00082 2.8E-08 45.4 3.1 42 1-42 75-116 (323)
32 1ais_B TFB TFIIB, protein (tra 96.4 0.032 1.1E-06 34.7 8.2 46 42-87 114-159 (200)
33 3k7a_M Transcription initiatio 96.0 0.0059 2E-07 41.5 3.6 52 36-87 129-180 (345)
34 4bbr_M Transcription initiatio 94.8 0.072 2.5E-06 36.3 5.8 52 36-87 129-180 (345)
35 2pmi_B PHO85 cyclin PHO80, ami 90.3 0.82 2.8E-05 30.6 5.8 52 36-87 77-131 (293)
36 3h4c_A Transcription factor TF 85.1 2.8 9.5E-05 27.0 5.6 52 36-87 15-69 (260)
37 3k7a_M Transcription initiatio 84.6 0.19 6.4E-06 34.1 0.0 49 39-87 238-286 (345)
38 4bbr_M Transcription initiatio 78.7 0.41 1.4E-05 32.5 0.0 50 38-87 237-286 (345)
39 1uhw_A Pleckstrin; three-helix 27.0 72 0.0025 18.0 3.1 30 33-63 40-69 (109)
40 1t98_A KICB protein, chromosom 24.8 1.5E+02 0.0052 19.5 4.7 21 55-75 105-125 (287)
41 2cso_A Pleckstrin; DEP domain, 20.2 95 0.0032 18.0 2.8 29 34-63 51-79 (127)
No 1
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.86 E-value=6.5e-22 Score=130.57 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHH
Q psy14722 4 ETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTAL 83 (87)
Q Consensus 4 e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l 83 (87)
|.+......+.+|.+ ...|+.+++.+|.++++|+.+|+.++++.++|+++||+++|||+++.+++++++|++|++||
T Consensus 23 ~i~~~l~~~E~~~~p---~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl 99 (252)
T 1f5q_B 23 MIYRSEREHDARMVG---VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVAL 99 (252)
T ss_dssp HHHHHHHHHHHHHSS---SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc---CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Confidence 344555677778876 34567789999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy14722 84 FVAS 87 (87)
Q Consensus 84 ~iAs 87 (87)
+|||
T Consensus 100 ~iAs 103 (252)
T 1f5q_B 100 HIAG 103 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9996
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.82 E-value=2.4e-20 Score=122.72 Aligned_cols=79 Identities=13% Similarity=0.315 Sum_probs=72.5
Q ss_pred HHHHHHHHhcccccc--cccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhc
Q psy14722 9 AINYVDRFLSLMSVV--RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVA 86 (87)
Q Consensus 9 ~~~~~d~~l~~~~~~--~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iA 86 (87)
....+.++.+..++. .|+.+++.+|..+++|+.+++..+++.++|+++|++++|||+++.++++.++|++|++||+||
T Consensus 26 l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA 105 (254)
T 2f2c_A 26 NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIG 105 (254)
T ss_dssp HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHH
Confidence 556777888776664 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy14722 87 S 87 (87)
Q Consensus 87 s 87 (87)
|
T Consensus 106 ~ 106 (254)
T 2f2c_A 106 S 106 (254)
T ss_dssp H
T ss_pred H
Confidence 6
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.81 E-value=3.1e-20 Score=122.39 Aligned_cols=80 Identities=28% Similarity=0.372 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcccccc--cccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHh
Q psy14722 8 LAINYVDRFLSLMSVV--RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFV 85 (87)
Q Consensus 8 l~~~~~d~~l~~~~~~--~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~i 85 (87)
.....+.++.+..++. .|+.+++.+|..+++|+.+++.++++.++|+++|++++|||+++.++++.++|++|++|++|
T Consensus 24 ~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~i 103 (257)
T 1g3n_C 24 NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLV 103 (257)
T ss_dssp HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 4445666777766653 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy14722 86 AS 87 (87)
Q Consensus 86 As 87 (87)
||
T Consensus 104 A~ 105 (257)
T 1g3n_C 104 AS 105 (257)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=122.07 Aligned_cols=83 Identities=28% Similarity=0.447 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHhcccccc--cccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHH
Q psy14722 5 TLHLAINYVDRFLSLMSVV--RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTA 82 (87)
Q Consensus 5 ~~~l~~~~~d~~l~~~~~~--~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~ 82 (87)
.+-.....+.++.+..++. .|+.+++.+|..+++|+.+++..+++.++|+++|++++|||+++.++.+.++|++|++|
T Consensus 41 i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tc 120 (306)
T 3g33_B 41 VLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVC 120 (306)
T ss_dssp HHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444556677777776554 47789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy14722 83 LFVAS 87 (87)
Q Consensus 83 l~iAs 87 (87)
|+|||
T Consensus 121 L~lAs 125 (306)
T 3g33_B 121 MLLAS 125 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99996
No 5
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.78 E-value=5.5e-19 Score=117.17 Aligned_cols=85 Identities=38% Similarity=0.512 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHHHhcccccc--cccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHH
Q psy14722 3 NETLHLAINYVDRFLSLMSVV--RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGT 80 (87)
Q Consensus 3 ~e~~~l~~~~~d~~l~~~~~~--~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~ 80 (87)
+|.+-.....+.+|.+..++. .|+.+++.+|..+++|+.+++..+++.++|+++|++++|||+++.++++.++|++|+
T Consensus 25 ~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~ 104 (271)
T 2w96_A 25 DRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGA 104 (271)
T ss_dssp CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHH
Confidence 355556667888888877654 478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q psy14722 81 TALFVAS 87 (87)
Q Consensus 81 ~~l~iAs 87 (87)
+||+|||
T Consensus 105 acL~iAs 111 (271)
T 2w96_A 105 TCMFVAS 111 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999996
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.78 E-value=6.8e-19 Score=116.73 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Q psy14722 5 TLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALF 84 (87)
Q Consensus 5 ~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~ 84 (87)
.+-.....+.++.+..++..++.+++.+|..+++|+.+++..+++.++|+++|++++|||+++.++++.++|++|++|++
T Consensus 10 i~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~ 89 (269)
T 2b9r_A 10 IYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMF 89 (269)
T ss_dssp TTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHH
Confidence 33334456677776666665558999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC
Q psy14722 85 VAS 87 (87)
Q Consensus 85 iAs 87 (87)
|||
T Consensus 90 iA~ 92 (269)
T 2b9r_A 90 IAS 92 (269)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.77 E-value=1.1e-18 Score=115.15 Aligned_cols=79 Identities=44% Similarity=0.609 Sum_probs=70.1
Q ss_pred HHHHHHHHhccccc-ccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 9 AINYVDRFLSLMSV-VRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 9 ~~~~~d~~l~~~~~-~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+.++.+..++ .+|+.+++.+|..+++|+.+++..+++.++|+++|++++|||+++.++++.++|++|++|++|||
T Consensus 14 l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~ 93 (260)
T 2cch_B 14 LREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLAS 93 (260)
T ss_dssp HHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHH
Confidence 34556667665544 35778999999999999999999999999999999999999999999999999999999999996
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.74 E-value=4.3e-18 Score=113.67 Aligned_cols=82 Identities=30% Similarity=0.530 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHhcccccc-cccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-CCCCccchHHHHHHHH
Q psy14722 6 LHLAINYVDRFLSLMSVV-RSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSL-MSVVRSKLQLLGTTAL 83 (87)
Q Consensus 6 ~~l~~~~~d~~l~~~~~~-~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~-~~~~~~~lqll~~~~l 83 (87)
+-.....+.+|.+..++. +|+.+++.+|..+++|+.+++..+++.++|+++|++++|||+++ ..+++.++|++|++||
T Consensus 22 ~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL 101 (283)
T 1w98_B 22 WKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSL 101 (283)
T ss_dssp HHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 333445556666554443 46788999999999999999999999999999999999999998 5899999999999999
Q ss_pred HhcC
Q psy14722 84 FVAS 87 (87)
Q Consensus 84 ~iAs 87 (87)
+|||
T Consensus 102 ~iA~ 105 (283)
T 1w98_B 102 FIAA 105 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9996
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.55 E-value=6.8e-15 Score=96.55 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=58.6
Q ss_pred cccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 26 KLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 26 ~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
+.....+|..+++|+.+++..++++++|+++|++++|||+++.++.+.++|++|++||+|||
T Consensus 34 ~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~ 95 (258)
T 2i53_A 34 PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAG 95 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999996
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.52 E-value=1.4e-14 Score=95.07 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=57.2
Q ss_pred cChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 28 QLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 28 ~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+|..+++|+.+++..++++++|+++|++++|||+++.++.+.++|++|++||+|||
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~ 85 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAA 85 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHh
Confidence 345899999999999999999999999999999999999999999999999999999996
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.47 E-value=5.2e-14 Score=96.71 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=57.2
Q ss_pred cChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 28 QLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 28 ~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+|..+++|+.+++..++++++|+++|++|+|||+++.++.+.++|++|++||+|||
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~ 92 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAA 92 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999999999996
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.9e-13 Score=88.88 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred hcccccccccccChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCc-cchHHHHHHHHHhcC
Q psy14722 17 LSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVR-SKLQLLGTTALFVAS 87 (87)
Q Consensus 17 l~~~~~~~~~~~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~-~~lqll~~~~l~iAs 87 (87)
++.....+++...-+.|..+++|+.+++..++++++|+++|++++|||+++.++.+ .++|++|++||+|||
T Consensus 12 ft~~~l~~~~~~~~~~R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~ 83 (235)
T 1zp2_A 12 LSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSC 83 (235)
T ss_dssp SCSSCTTSSCCCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 33333433333333459999999999999999999999999999999999999999 999999999999996
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=89.89 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=56.9
Q ss_pred cChhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 28 QLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 28 ~~~~~r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+|..+++|+.+++..++++++|+++|++++|||++...+.+.++|++|++||+|||
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~ 97 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLAS 97 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999996
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.26 E-value=1.1e-11 Score=84.15 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=55.7
Q ss_pred ChhhHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 29 LLGTTALFVASIIEVAEEYK--MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 29 ~~~~r~~li~w~~ev~~~~~--l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....|....+|+.+++..++ ++++|+++|++|+|||++..++.+.++|++|++||+|||
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~ 113 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLAC 113 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHH
Confidence 34678889999999999999 999999999999999999999999999999999999996
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.94 E-value=1.2e-09 Score=71.87 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=56.8
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHHHHH-----------hhhcchhHH---------------
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAE-----------EYKMHNETL--------------- 54 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~ev~~-----------~~~l~~~tl--------------- 54 (87)
+++||+|++++|+|||++..++.+.+.|+.|..|++++.++|... +..++.+.+
T Consensus 65 l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l 144 (252)
T 1f5q_B 65 QDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVA 144 (252)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred CChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcc
Confidence 579999999999999999999999999999999999999987221 112222221
Q ss_pred --HHHHHHHHHHhccCCCCcc
Q psy14722 55 --HLAINYVDRFLSLMSVVRS 73 (87)
Q Consensus 55 --~lav~~~Dr~L~~~~~~~~ 73 (87)
+.+..|+++|+...+.+++
T Consensus 145 ~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 145 DRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp CCCCHHHHHHHHHHHTTCCHH
T ss_pred CCCCHHHHHHHHHHHcCCCcc
Confidence 2478999999988766543
No 16
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.84 E-value=2.2e-08 Score=65.53 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+||+|++++|+|||++..++.+.+.|+.|..|++++.+.|
T Consensus 68 l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~e 109 (254)
T 2f2c_A 68 LDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIR 109 (254)
T ss_dssp CCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999886
No 17
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.81 E-value=1.9e-08 Score=65.97 Aligned_cols=42 Identities=31% Similarity=0.520 Sum_probs=39.8
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+||+|++++|+|||++..++.+.+.|+.|..|++++.+.|
T Consensus 67 l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~e 108 (257)
T 1g3n_C 67 LEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLR 108 (257)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999887
No 18
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.70 E-value=5.1e-08 Score=64.39 Aligned_cols=42 Identities=40% Similarity=0.634 Sum_probs=39.6
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+||++++++|+|||++..++.+.+.|..+..|++++.+.|
T Consensus 54 l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~e 95 (269)
T 2b9r_A 54 LLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYE 95 (269)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999998886
No 19
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.69 E-value=7.9e-08 Score=64.68 Aligned_cols=42 Identities=38% Similarity=0.686 Sum_probs=40.1
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.+||+|++++|+|||++..++.+.+.|+.+..|++++.++|
T Consensus 87 l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~e 128 (306)
T 3g33_B 87 CEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLR 128 (306)
T ss_dssp CCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999986
No 20
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.56 E-value=8.7e-08 Score=62.90 Aligned_cols=42 Identities=67% Similarity=1.006 Sum_probs=39.6
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.+||++++++|+|||++..++.+.+.|+.+..|++++.+.|
T Consensus 55 l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~e 96 (260)
T 2cch_B 55 LQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFE 96 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999998887
No 21
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.54 E-value=1.1e-07 Score=63.17 Aligned_cols=42 Identities=40% Similarity=0.760 Sum_probs=38.6
Q ss_pred CCcchhHHHHHHHHHHhcc-cccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSL-MSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~-~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+||++++++|+|||++. .++.+.+.|+.|..|++++.+.|
T Consensus 66 l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~e 108 (283)
T 1w98_B 66 LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLE 108 (283)
T ss_dssp CBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999998 58888999999999999999887
No 22
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.51 E-value=2.9e-07 Score=58.40 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 34 ALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 34 ~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+++.+++..+++++.|...|+.+++||+....+...+.+.++++|+++||
T Consensus 6 ~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAc 59 (207)
T 1c9b_A 6 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIAC 59 (207)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999999999999999999995
No 23
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.48 E-value=3e-07 Score=60.68 Aligned_cols=42 Identities=55% Similarity=0.839 Sum_probs=39.7
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
+.+||++++++|+|||++..++.+.+.|..+..|++++.+.|
T Consensus 73 l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~E 114 (271)
T 2w96_A 73 CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMK 114 (271)
T ss_dssp CCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999887
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.23 E-value=3.7e-06 Score=54.29 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCcchhHHHHHHHHHHhccccccc-ccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVR-SKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~-~~~~~~~~r~~li~w~~e 42 (87)
|.++|++.|++|+|||++..++.+ .+.+..+..|++++.+.|
T Consensus 44 L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~E 86 (235)
T 1zp2_A 44 LRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVE 86 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccc
Confidence 568999999999999999999998 888999999999998776
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.17 E-value=6.6e-06 Score=53.60 Aligned_cols=42 Identities=31% Similarity=0.463 Sum_probs=39.0
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|+++|++|+|||++..++.+.+.+..+..|++++.+.|
T Consensus 57 l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~e 98 (258)
T 2i53_A 57 LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE 98 (258)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccc
Confidence 568999999999999999999999999999999999998876
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.07 E-value=1.2e-05 Score=52.38 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=38.8
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|+++|++|+|||++..++.+.+.+..+..|++++.+.|
T Consensus 47 l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~E 88 (257)
T 2ivx_A 47 VSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88 (257)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccc
Confidence 568999999999999999999999999999999999998876
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.93 E-value=1.6e-05 Score=52.80 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=38.7
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|++++++|+|||+...++.+.+.+..+..|++++.+.|
T Consensus 59 L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E 100 (285)
T 3rgf_B 59 LRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVE 100 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999999999999998876
No 28
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.91 E-value=3.9e-05 Score=48.24 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 34 ALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 34 ~~li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+++.+++..+++++.+...|..+++++.....+.....+.++++|+++||
T Consensus 10 ~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAc 63 (200)
T 1ais_B 10 AFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAAC 63 (200)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999988888899999999999985
No 29
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.52 E-value=0.00047 Score=43.48 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|...++.|.+||+...++...+.+..+..|+.++...|
T Consensus 21 L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~e 62 (207)
T 1c9b_A 21 LPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 62 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhc
Confidence 457889999999999999988877666777777776664443
No 30
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.24 E-value=0.00017 Score=49.44 Aligned_cols=42 Identities=31% Similarity=0.435 Sum_probs=39.6
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|+++|++|+|||++..++.+.+.++.+..|++++.+.|
T Consensus 54 L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~E 95 (358)
T 2pk2_A 54 VSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVE 95 (358)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhc
Confidence 568999999999999999999999999999999999999887
No 31
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.80 E-value=0.00082 Score=45.38 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCcchhHHHHHHHHHHhcccccccccccChhhHHHHHHHHHH
Q psy14722 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42 (87)
Q Consensus 1 ~~~e~~~l~~~~~d~~l~~~~~~~~~~~~~~~r~~li~w~~e 42 (87)
|.++|++.|++|+|||+...++.+.+.++.+..|++++.+.|
T Consensus 75 Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E 116 (323)
T 1jkw_A 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD 116 (323)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999999999999998877
No 32
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.38 E-value=0.032 Score=34.68 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 42 EVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 42 ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
..+..++++.++...|..++++.....-........++++|+++|+
T Consensus 114 r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~ 159 (200)
T 1ais_B 114 KFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIAS 159 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 3444556666666677777777776655556678899999999985
No 33
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0059 Score=41.50 Aligned_cols=52 Identities=6% Similarity=0.037 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+-+++..++++..+.-.|..++.++.....+.....+.++++|+++|+
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAc 180 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHH
Confidence 4456667999999999999999999999999988888899999999999996
No 34
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.82 E-value=0.072 Score=36.26 Aligned_cols=52 Identities=6% Similarity=0.037 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
....+-+++..++++..+.-.|..++.++.....+......-++++|+++|+
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiAC 180 (345)
T 4bbr_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 4446678999999999999999999999999887887788999999999985
No 35
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=90.32 E-value=0.82 Score=30.64 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhccC---CCCccchHHHHHHHHHhcC
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSLM---SVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~---~~~~~~lqll~~~~l~iAs 87 (87)
+-+|+.++....+++.+++-.|..|+||..... .+.+...+-+=++|+.+|+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAs 131 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVAT 131 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHH
Confidence 566788888888999999999999999998853 3455677778888888885
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=85.14 E-value=2.8 Score=27.04 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc---CCCCccchHHHHHHHHHhcC
Q psy14722 36 FVASIIEVAEEYKMHNETLHLAINYVDRFLSL---MSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 36 li~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~---~~~~~~~lqll~~~~l~iAs 87 (87)
+.+.+...+.+-+++..++-.|+-+-.+|.-. .+..-++.+=++++|++|||
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAa 69 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAA 69 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHH
Confidence 44556778888899999999999888887765 45667788999999999996
No 37
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=84.60 E-value=0.19 Score=34.10 Aligned_cols=49 Identities=4% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 39 SIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 39 w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
.+...+..++++.++...|..++++.....-.......-|+++|+++||
T Consensus 238 ~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa 286 (345)
T 3k7a_M 238 YIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNI 286 (345)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHH
Confidence 4445666666666666667777766665543445577888999999986
No 38
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=78.74 E-value=0.41 Score=32.54 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHhcC
Q psy14722 38 ASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87 (87)
Q Consensus 38 ~w~~ev~~~~~l~~~tl~lav~~~Dr~L~~~~~~~~~lqll~~~~l~iAs 87 (87)
+++...+.+++++.++...|..++++....--.......-++++|+++||
T Consensus 237 ~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa 286 (345)
T 4bbr_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNI 286 (345)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHH
Confidence 45556777777777777777777776666543445567888999999886
No 39
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=27.02 E-value=72 Score=17.96 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q psy14722 33 TALFVASIIEVAEEYKMHNETLHLAINYVDR 63 (87)
Q Consensus 33 r~~li~w~~ev~~~~~l~~~tl~lav~~~Dr 63 (87)
=+.+|+|+++-. ...=..|.+.++-.++|+
T Consensus 40 GselVdWLi~~~-~~~~R~EAv~lgq~Ll~~ 69 (109)
T 1uhw_A 40 GSGVIDWLVSNK-LVRNRQEGLMISASLLSE 69 (109)
T ss_dssp HHHHHHHHHHHT-SSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 367999998832 121223555565566655
No 40
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=24.76 E-value=1.5e+02 Score=19.45 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhccCCCCccch
Q psy14722 55 HLAINYVDRFLSLMSVVRSKL 75 (87)
Q Consensus 55 ~lav~~~Dr~L~~~~~~~~~l 75 (87)
++|+.+.|.|+......+-++
T Consensus 105 pL~igI~dYyirqrefs~lrL 125 (287)
T 1t98_A 105 PLGIGITDYYIRQREFSTLRL 125 (287)
T ss_dssp HHHHHHHHHHHSCCCCCHHHH
T ss_pred hhhhhHHHHHHHHHHHhHHHH
Confidence 479999999999887776554
No 41
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=20.17 E-value=95 Score=17.96 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q psy14722 34 ALFVASIIEVAEEYKMHNETLHLAINYVDR 63 (87)
Q Consensus 34 ~~li~w~~ev~~~~~l~~~tl~lav~~~Dr 63 (87)
+.+|+|+++.. ...=..|.+.++-.++++
T Consensus 51 sdlVdWLl~~~-~~~sR~EAv~lg~~Ll~~ 79 (127)
T 2cso_A 51 NCVIDWLVSNQ-SVRNRQEGLMIASSLLNE 79 (127)
T ss_dssp HHHHHHHHHTT-SCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 57999998832 112224556666666665
Done!