RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14722
(87 letters)
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 82.8 bits (205), Expect = 3e-21
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ + E +++ L+++ +DR+L + LQ +G + + S
Sbjct: 59 MHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGS 106
Score = 68.9 bits (169), Expect = 5e-16
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
+ L+++ +DR+L + LQ +G + + S
Sbjct: 68 LDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGS 106
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 83.2 bits (206), Expect = 3e-21
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
++EV EE K E LA+NY+DRFLSL V +S+LQLLG T +FVAS
Sbjct: 64 MLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVAS 111
Score = 69.0 bits (169), Expect = 5e-16
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
E LA+NY+DRFLSL V +S+LQLLG T +FVAS
Sbjct: 73 CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVAS 111
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 82.9 bits (205), Expect = 5e-21
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
++EV EE + E LA+NY+DR+LS + +++LQLLG + +AS
Sbjct: 78 MLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLAS 125
Score = 69.0 bits (169), Expect = 7e-16
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
E LA+NY+DR+LS + +++LQLLG + +AS
Sbjct: 87 CEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLAS 125
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 82.0 bits (203), Expect = 6e-21
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
++EV EEYK+ NETLHLA+NY+DRFLS MSV+R KLQL+GT A+ +AS
Sbjct: 46 LVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLAS 93
Score = 68.5 bits (168), Expect = 7e-16
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
+ NETLHLA+NY+DRFLS MSV+R KLQL+GT A+ +AS
Sbjct: 55 LQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLAS 93
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 81.3 bits (201), Expect = 1e-20
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ V +EY + + LA+N +DR L + V + Q G+ L VAS
Sbjct: 58 MFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVAS 105
Score = 67.9 bits (166), Expect = 1e-15
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
+ + LA+N +DR L + V + Q G+ L VAS
Sbjct: 67 LEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVAS 105
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 80.5 bits (199), Expect = 3e-20
Identities = 17/48 (35%), Positives = 35/48 (72%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+++V ++++ ET+++ ++ +DRF+ SV + LQL+G TA+F+AS
Sbjct: 45 LVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIAS 92
Score = 67.4 bits (165), Expect = 2e-15
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
+ ET+++ ++ +DRF+ SV + LQL+G TA+F+AS
Sbjct: 54 LLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIAS 92
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 77.5 bits (191), Expect = 5e-19
Identities = 21/49 (42%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLM-SVVRSKLQLLGTTALFVAS 87
++EV E YK+H ET +LA ++ DR+++ +VV++ LQL+G ++LF+A+
Sbjct: 57 LMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAA 105
Score = 64.0 bits (156), Expect = 5e-14
Identities = 17/43 (39%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1 MHNETLHLAINYVDRFLSLM-SVVRSKLQLLGTTALFVASIIE 42
+H ET +LA ++ DR+++ +VV++ LQL+G ++LF+A+ +E
Sbjct: 66 LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLE 108
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 76.8 bits (189), Expect = 6e-19
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ V ++ + N LA+ +D + R Q AL +A
Sbjct: 56 MFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAG 103
Score = 66.0 bits (161), Expect = 6e-15
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
N LA+ +D + R Q AL +A +
Sbjct: 65 QDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVR 106
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 38.0 bits (88), Expect = 8e-05
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
I +V +H +TL I Y RF S + + G LF+A
Sbjct: 48 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAG 95
Score = 31.9 bits (72), Expect = 0.013
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
+H +TL I Y RF S + + G LF+A +E
Sbjct: 57 LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE 98
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation
P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 37.9 bits (87), Expect = 1e-04
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ ++ + + T++ AI Y+ RF + S R + ALF+A+
Sbjct: 45 LQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAA 92
Score = 31.0 bits (69), Expect = 0.029
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
+ T++ AI Y+ RF + S R + ALF+A+ +E
Sbjct: 54 VSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVE 95
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 33.5 bits (76), Expect = 0.004
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 36 FVASIIEVAEEYKMH--NETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ ++E +K + A Y RF SV+ +++ T F+A
Sbjct: 60 YEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLAC 113
Score = 31.6 bits (71), Expect = 0.016
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
M + A Y RF SV+ +++ T F+A ++
Sbjct: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD 116
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 28.2 bits (62), Expect = 0.26
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 35 LFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
I E+ + + T++ AI Y+ RF S + ++ +TALF+A+
Sbjct: 33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAA 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.2
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 36 FVASIIEVAEEYKMHNET---LHLAINYVDRFLSLMS 69
F + E E + +E L +FL +S
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVG----KFLGYVS 69
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 24.4 bits (53), Expect = 6.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 1 MHNETLHLAIN-------YVDRFLSLMSVVRSKLQLLGT 32
M + L +N D +L++ +R KL L GT
Sbjct: 1 MTADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGT 39
Score = 24.4 bits (53), Expect = 6.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 49 MHNETLHLAIN-------YVDRFLSLMSVVRSKLQLLGT 80
M + L +N D +L++ +R KL L GT
Sbjct: 1 MTADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGT 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.135 0.358
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,155,759
Number of extensions: 56298
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 35
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)