RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14722
(87 letters)
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 61.8 bits (150), Expect = 1e-14
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ + E +++ L+++ +DR+L + LQ +G + + S
Sbjct: 38 MHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGS 85
Score = 52.6 bits (126), Expect = 5e-11
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMH 50
+ L+++ +DR+L + LQ +G + + S I + +
Sbjct: 47 LDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVS 96
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 56.5 bits (136), Expect = 1e-12
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 34 ALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
A+ V ++EV EEYK+ NETLHLA+NY+DRFLS MSV+R KLQL+GT A+ +AS
Sbjct: 32 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLAS 85
Score = 47.6 bits (113), Expect = 4e-09
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
+ NETLHLA+NY+DRFLS MSV+R KLQL+GT A+ +AS E
Sbjct: 47 LQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFE 88
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 56.9 bits (137), Expect = 1e-12
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ V ++ + N LA+ +D + R Q AL +A
Sbjct: 51 MFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAG 98
Score = 46.9 bits (111), Expect = 1e-08
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
N LA+ +D + R Q AL +A +
Sbjct: 60 QDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVR 101
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 53.4 bits (128), Expect = 2e-11
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ V +EY + + LA+N +DR L + V + Q G+ L VAS
Sbjct: 43 MFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVAS 90
Score = 43.8 bits (103), Expect = 1e-07
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 39
+ + LA+N +DR L + V + Q G+ L VAS
Sbjct: 52 LEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVAS 90
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens)
[TaxId: 9606]}
Length = 144
Score = 50.7 bits (121), Expect = 3e-10
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
I +V +H +TL I Y RF S + + G LF+A
Sbjct: 44 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAG 91
Score = 42.7 bits (100), Expect = 4e-07
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINY 60
+H +TL I Y RF S + + G LF+A +E E K + + A +
Sbjct: 53 LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE--ETPKKCKDIIKTARSL 110
Query: 61 VDRFLSLMSVVRSKLQLL 78
++ K +++
Sbjct: 111 LNDVQFGQFGDDPKEEVM 128
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 143
Score = 50.0 bits (119), Expect = 5e-10
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 40 IIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
I E+ + + T++ AI Y+ RF S + ++ +TALF+A+
Sbjct: 38 IQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAA 85
Score = 41.9 bits (98), Expect = 8e-07
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
+ T++ AI Y+ RF S + ++ +TALF+A+ +E
Sbjct: 47 VSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 49.6 bits (118), Expect = 9e-10
Identities = 21/55 (38%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 34 ALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVR-SKLQLLGTTALFVAS 87
A+ + ++EV E YK+H ET +LA ++ DR+++ V + LQL+G ++LF+A+
Sbjct: 44 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAA 98
Score = 41.1 bits (96), Expect = 2e-06
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVR-SKLQLLGTTALFVAS 39
+H ET +LA ++ DR+++ V + LQL+G ++LF+A+
Sbjct: 59 LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAA 98
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 47.7 bits (113), Expect = 5e-09
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 36 FVASIIEVAEEYKMH--NETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAS 87
+ ++E +K + A Y RF SV+ +++ T F+A
Sbjct: 50 YEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLAC 103
Score = 43.1 bits (101), Expect = 3e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1 MHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIE 42
M + A Y RF SV+ +++ T F+A ++
Sbjct: 65 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD 106
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 29.2 bits (64), Expect = 0.045
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 2 HNETLHLAINYVDRFLSL-MSVVRSKLQLLGTTALFV--ASIIEVAEEYKMHNETLHLAI 58
N+ ++L + S +VV S +++ GT LF+ A II + A
Sbjct: 288 QNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAE 347
Query: 59 NYVDRFLSL 67
+ L+L
Sbjct: 348 QAAAKILAL 356
Score = 23.8 bits (50), Expect = 3.5
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 50 HNETLHLAINYVDRFLSL-MSVVRSKLQLLGTTALFVA 86
N+ ++L + S +VV S +++ GT LF+
Sbjct: 288 QNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIV 325
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Length = 116
Score = 25.8 bits (57), Expect = 0.45
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 19 LMSVVRSKLQLLGTTALFV----------ASIIEVAEEYK 48
M ++R ++QL A+F+ ++ ++ E+ K
Sbjct: 60 FMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEK 99
Score = 22.7 bits (49), Expect = 6.7
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 67 LMSVVRSKLQLLGTTALFV 85
M ++R ++QL A+F+
Sbjct: 60 FMWIIRKRIQLPSEKAIFL 78
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 23.0 bits (48), Expect = 6.7
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 27 LQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLM 68
L+ +G ++EV+ Y T LA L
Sbjct: 256 LRCVGDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQY 297
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.135 0.358
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 259,643
Number of extensions: 9050
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 24
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)