BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14726
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 147/288 (51%), Gaps = 6/288 (2%)
Query: 347 HEILFAIGGW-SGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGF 405
+E+L +GG+ S SP D VE YD + W + + R Y + + IYVIGG+
Sbjct: 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR--KRRYVASVSLHDRIYVIGGY 71
Query: 406 DGNEYYNSCRCFNAVT---KVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVE 462
DG +S C + VW +APMN +R D+IY GG++G RR S+E
Sbjct: 72 DGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSME 131
Query: 463 KYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE 522
+Y+ +QWS++ M R A G IY GG++G N LNS E YDP WT +
Sbjct: 132 RYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191
Query: 523 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV 582
PM +RSG ++ IYV+GGF+G + + + E YN T +W+ V M PR V
Sbjct: 192 PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV 251
Query: 583 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 630
+ ++AI G++G + + +ECYD D W T M R CV+
Sbjct: 252 LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 9/254 (3%)
Query: 385 GPRAYHGTAVIGYN--IYVIGGFDGNEY-YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 441
GPR A +G N + V+GGF + + ++ T+ W + + KR YV++
Sbjct: 4 GPRT---RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 442 HHDVIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMNVERSDASATTLQGKIYITGG 498
HD IY +GGY+G+ R +SVE +YT ++ W +APMNV R A ATTL IY++GG
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG 120
Query: 499 FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 558
F+G S E YDP +QW+++ M+ R G + IY +GG++G++ + + EKY
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY 180
Query: 559 NPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDM 618
+P T W+ V M RS + +++D I+ +GGF+G + VE Y+ +TD W T M
Sbjct: 181 DPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240
Query: 619 NIYRSALSACVIMG 632
R + A V+ G
Sbjct: 241 TTPRCYVGATVLRG 254
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 316 IETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRW 375
I+ + L D++ + G V V +++ +GG+ G + + VE YD W
Sbjct: 137 IDQWSMLGDMQTAREGAGLV---------VASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187
Query: 376 VKIEQVDPMG-PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKR 434
V PM R+ G A++ +IYV+GGFDG + +S +N T W + M R
Sbjct: 188 T---NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 435 CYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 490
CYV V +YA+ GY+G +S+E Y+ + W ++ M +R DA L+
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 493 IYITGGFNGHNC-LNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSR 551
+ + GGF ++ E YDP+ +W+ + + +R V+ ++ H+ IYVIGG++G SR
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSR 76
Query: 552 MCNGEKYNPVT---KTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 608
+ + E + W V M R + DMI+ GGF+G +E YD
Sbjct: 77 LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPN 136
Query: 609 TDEWYEATDMNIYRSALSACVIMGL 633
D+W DM R V G+
Sbjct: 137 IDQWSMLGDMQTAREGAGLVVASGV 161
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 8/301 (2%)
Query: 333 GEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGT 392
G VP P+V +++ GG+ S ++E Y+ W+++ D PR+
Sbjct: 12 GLVPRGSHMAPKV-GRLIYTAGGYFRQS-LSYLEAYNPSDGTWLRL--ADLQVPRSGLAG 67
Query: 393 AVIGYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYA 448
V+G +Y +GG DGN ++ C+N +T W APM+ R + V IYA
Sbjct: 68 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYA 127
Query: 449 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSC 508
+GG +G NSVE+Y ++W L+APM R L +Y GGF+G N LNS
Sbjct: 128 VGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSA 187
Query: 509 EVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 568
E Y PE N+W +I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V
Sbjct: 188 ECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 247
Query: 569 PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSAC 628
M + RS I V I+ +GG++G T + VECYD TD W E T M RS +
Sbjct: 248 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 307
Query: 629 V 629
V
Sbjct: 308 V 308
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 123/251 (49%), Gaps = 5/251 (1%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDV 445
PR H +G IY GG+ + + +N W +A + R ++ V +
Sbjct: 15 PRGSHMAPKVGRLIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGL 73
Query: 446 IYAMGGYN----GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 501
+YA+GG N G ++++ YN NQWS APM+V R+ + G IY GG +G
Sbjct: 74 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 133
Query: 502 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 561
NS E Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P
Sbjct: 134 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 193
Query: 562 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 621
W + M RS + V+ + I+A GG++G + VE YD +T+ W M
Sbjct: 194 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 253
Query: 622 RSALSACVIMG 632
RSAL V G
Sbjct: 254 RSALGITVHQG 264
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 574 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 633
PR + + +I+ GG+ ++ ++E Y+ W D+ + RS L+ CV+ GL
Sbjct: 15 PRGSHMAPKVGRLIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGL 73
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 150/296 (50%), Gaps = 12/296 (4%)
Query: 343 PRVPH-----EILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGY 397
PR H +++ GG+ S ++E Y+ W+++ D PR+ V+G
Sbjct: 15 PRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSDGTWLRL--ADLQVPRSGLAGCVVGG 71
Query: 398 NIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYN 453
+Y +GG DGN ++ C+N +T W APM+ R + V IYA+GG +
Sbjct: 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSH 131
Query: 454 GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 513
G NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y P
Sbjct: 132 GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 191
Query: 514 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN 573
E N+W +I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M +
Sbjct: 192 ERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251
Query: 574 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 629
RS I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 252 RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 6/251 (2%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDV 445
PR H V G IY GG+ + + +N W +A + R ++ V +
Sbjct: 15 PRGSHAPKV-GRLIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 446 IYAMGGYN----GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 501
+YA+GG N G ++++ YN NQWS APM+V R+ + G IY GG +G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 502 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 561
NS E Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P
Sbjct: 133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192
Query: 562 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 621
W + M RS + V+ + I+A GG++G + VE YD +T+ W M
Sbjct: 193 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252
Query: 622 RSALSACVIMG 632
RSAL V G
Sbjct: 253 RSALGITVHQG 263
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 574 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 633
PR + A +V +I+ GG+ ++ ++E Y+ W D+ + RS L+ CV+ GL
Sbjct: 15 PRGSHAPKV-GRLIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGL 72
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 152/299 (50%), Gaps = 13/299 (4%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
P++ R +++ GG+ S ++E Y+ W+++ D PR+ V+G
Sbjct: 14 APKVGR------LIYTAGGYFRQS-LSYLEAYNPSNGSWLRL--ADLQVPRSGLAGCVVG 64
Query: 397 YNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGY 452
+Y +GG DGN ++ C+N +T W A M+ R + V IYA+GG
Sbjct: 65 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 124
Query: 453 NGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYD 512
+G +SVE+Y ++W L+APM R L +Y GGF+G N LNS E Y
Sbjct: 125 HGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 184
Query: 513 PECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY 572
PE N+W +I PM RSG H CIY GG++G ++ + E+Y+ T+TW+ V M
Sbjct: 185 PERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMR 244
Query: 573 NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 631
+ RS I V I+ +GG++G T + VECYD +D W E T M RS + V M
Sbjct: 245 HHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 303
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 5/242 (2%)
Query: 395 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYN- 453
+G IY GG+ + + +N W +A + R ++ V ++YA+GG N
Sbjct: 17 VGRLIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 75
Query: 454 ---GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEV 510
G ++++ YN NQWS A M+V R+ + G IY GG +G +S E
Sbjct: 76 SPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVER 135
Query: 511 YDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 570
Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P W +
Sbjct: 136 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITP 195
Query: 571 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 630
M RS + V+ + I+A GG++G + VE YD +T+ W M +RSAL V
Sbjct: 196 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVH 255
Query: 631 MG 632
G
Sbjct: 256 QG 257
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 583 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 633
+ +I+ GG+ ++ ++E Y+ W D+ + RS L+ CV+ GL
Sbjct: 17 VGRLIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGL 66
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 152/299 (50%), Gaps = 13/299 (4%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
P++ R +++ GG+ S ++E Y+ W+++ D PR+ V+G
Sbjct: 13 APKVGR------LIYTAGGYFRQS-LSYLEAYNPSNGSWLRL--ADLQVPRSGLAGCVVG 63
Query: 397 YNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGY 452
+Y +GG DGN ++ C+N +T W A M+ R + V IYA+GG
Sbjct: 64 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 123
Query: 453 NGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYD 512
+G +SVE+Y ++W L+APM R L +Y GGF+G N LNS E Y
Sbjct: 124 HGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 183
Query: 513 PECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY 572
PE N+W +I PM RSG H CIY GG++G ++ + E+Y+ T+TW+ V M
Sbjct: 184 PERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMR 243
Query: 573 NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 631
+ RS I V I+ +GG++G T + VECYD +D W E T M RS + V M
Sbjct: 244 HHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 302
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 5/242 (2%)
Query: 395 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYN- 453
+G IY GG+ + + +N W +A + R ++ V ++YA+GG N
Sbjct: 16 VGRLIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 74
Query: 454 ---GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEV 510
G ++++ YN NQWS A M+V R+ + G IY GG +G +S E
Sbjct: 75 SPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVER 134
Query: 511 YDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 570
Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P W +
Sbjct: 135 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITP 194
Query: 571 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 630
M RS + V+ + I+A GG++G + VE YD +T+ W M +RSAL V
Sbjct: 195 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVH 254
Query: 631 MG 632
G
Sbjct: 255 QG 256
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 583 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 633
+ +I+ GG+ ++ ++E Y+ W D+ + RS L+ CV+ GL
Sbjct: 16 VGRLIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGL 65
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 133/270 (49%), Gaps = 6/270 (2%)
Query: 364 FVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGF----DGNEYYNSCRCFNA 419
++E Y+ W+++ D PR+ V+G +Y +GG DGN ++ C+N
Sbjct: 40 YLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97
Query: 420 VTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV 479
T W AP + R + V IYA+GG +G NSVE+Y ++W L+AP
Sbjct: 98 XTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLT 157
Query: 480 ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC 539
R L +Y GGF+G N LNS E Y PE N+W I RSG H C
Sbjct: 158 RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNC 217
Query: 540 IYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTI 599
IY GG++G ++ + E+Y+ T+TW+ V + RS I V I+ +GG++G T +
Sbjct: 218 IYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFL 277
Query: 600 YHVECYDEKTDEWYEATDMNIYRSALSACV 629
VECYD TD W E T RS + V
Sbjct: 278 DSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 120/253 (47%), Gaps = 10/253 (3%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDV 445
PR H V G IY GG+ + + +N W +A + R ++ V +
Sbjct: 15 PRGSHAPKV-GRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 446 IYAMGGYN----GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 501
+YA+GG N G ++++ YN NQWS AP +V R+ + G IY GG
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGS-- 130
Query: 502 HNCL--NSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 559
H C+ NS E Y+PE ++W L+ P RR GV + +Y +GGF+G +R+ + E Y
Sbjct: 131 HGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 190
Query: 560 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 619
P W + RS + V+ + I+A GG++G + VE YD +T+ W
Sbjct: 191 PERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXK 250
Query: 620 IYRSALSACVIMG 632
RSAL V G
Sbjct: 251 HRRSALGITVHQG 263
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 345 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGG 404
V + +L+A+GG+ G + + E Y + W I + + R+ G V+ IY GG
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTI--RSGAGVCVLHNCIYAAGG 223
Query: 405 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKY 464
+DG + NS ++ T+ W +AP +R + VH IY +GGY+G +SVE Y
Sbjct: 224 YDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECY 283
Query: 465 NYTENQWSLIAPMNVERS 482
+ + WS + RS
Sbjct: 284 DPDTDTWSEVTRXTSGRS 301
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 345 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGG 404
V H ++A GG+ G + VE YD + W + R+ G V IYV+GG
Sbjct: 213 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHR--RSALGITVHQGRIYVLGG 270
Query: 405 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 441
+DG+ + +S C++ T W E+ R V AV
Sbjct: 271 YDGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 574 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 633
PR + A +V +I+ GG+ ++ ++E Y+ W D+ + RS L+ CV+ GL
Sbjct: 15 PRGSHAPKV-GRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL 72
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 7/294 (2%)
Query: 342 RPRVPHEI--LFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNI 399
R R P + L + G VE YD + +RW ++ ++ RA G + +
Sbjct: 7 RLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA--GMVYMAGLV 64
Query: 400 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQN 459
+ +GGF+G+ + ++ V W +A M +R + AV + ++YA+GG++G +
Sbjct: 65 FAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLS 124
Query: 460 SVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN--GHNCLNSCEVYDPECNQ 517
SVE YN N+W +APMN RS + G +Y GG++ CL++ E Y+ N+
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE 184
Query: 518 WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN 577
WT I M RRSG + +Y +GG +G + E Y+P T W QV DM R N
Sbjct: 185 WTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244
Query: 578 FAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATD-MNIYRSALSACVI 630
+ ++ +++ +GG +G + VE Y+ TD+W + M+ RS VI
Sbjct: 245 AGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI 298
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 2/237 (0%)
Query: 399 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQ 458
+ V+ G + S C++ + W ++A + +RC +++A+GG+NG R
Sbjct: 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRV 76
Query: 459 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 518
+V+ Y+ ++QW+ +A M RS A L G +Y GGF+G L+S E Y+ + N+W
Sbjct: 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136
Query: 519 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMC--NGEKYNPVTKTWSQVPDMYNPRS 576
+ PM RRS V +Y +GG++ SR C E YN T W+ + +M RS
Sbjct: 137 FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS 196
Query: 577 NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 633
+ V++++++A+GG +G VE YD T+ W + DMN+ R C + GL
Sbjct: 197 GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 125/242 (51%), Gaps = 5/242 (2%)
Query: 349 ILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDGN 408
++FA+GG++G V++YD D+W + + R+ G AV+ +Y +GGFDG+
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLGAAVLNGLLYAVGGFDGS 120
Query: 409 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQ--NSVEKYNY 466
+S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE YN
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 467 TENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 526
T N+W+ IA M+ RS A L +Y GG +G S EVYDP N W + M
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 527 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAIEVIDD 585
R A + +YV+GG +G + + E YNP T W+ V M RS + VID
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
Query: 586 MI 587
+
Sbjct: 301 RL 302
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 4/245 (1%)
Query: 72 DRAMSVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRA-LFTTSLHDQ 130
D + + ++AL+ FRE++ CDA +VL D P+ +NIL A S Y R L D
Sbjct: 11 DPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDD 69
Query: 131 EKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 190
+E+ G+ V +++Y + ++ + ED + ++ A D ++ + LCC+F++
Sbjct: 70 GSTYKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEG 129
Query: 191 LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXX 250
NC GI F+ + + +Y+ +F DV+ +EE +
Sbjct: 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVS-STEEFLELSPQKLKEVISLEK 188
Query: 251 LNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQS-TP 309
LNV +E V+E +IRWI +D E RK H + + + L++ + RE+ + P V+
Sbjct: 189 LNVGNERYVFEAVIRWIAHDTEIRKVHXKDVXSALWVSGLDSSYLREQXLNEPLVREIVK 248
Query: 310 ECRPI 314
EC I
Sbjct: 249 ECSNI 253
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 8/222 (3%)
Query: 349 ILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFD-G 407
+++ +GG S P ++ Y+ D W ++ P PR IY GG + G
Sbjct: 57 VVYILGG-SQLFPIKRMDCYNVVKDSW--YSKLGPPTPRDSLAACAAEGKIYTSGGSEVG 113
Query: 408 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQ----RRQNSVEK 463
N C++ T+ W M +RC + +IY GG G R NS E
Sbjct: 114 NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEV 173
Query: 464 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 523
Y+ W+ + PM R + ++ KI+ GG NG L++ E YD + N+W ++ P
Sbjct: 174 YDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP 233
Query: 524 MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTW 565
M + V C A +YV+ GF G+ R+ + +YN T W
Sbjct: 234 MPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 10/239 (4%)
Query: 400 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQN 459
Y I F G++ SCR FN W +I KR + +V+Y +GG
Sbjct: 13 YRIALFGGSQP-QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIK 70
Query: 460 SVEKYNYTENQW-SLIAPMNVERSDASATTLQGKIYITGGFN-GHNCLNSCEVYDPECNQ 517
++ YN ++ W S + P R +A +GKIY +GG G++ L E YD
Sbjct: 71 RMDCYNVVKDSWYSKLGP-PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129
Query: 518 WTLIEPMRHRRSGVSCIAYHECIYVIGGFNG---MSRMCNG-EKYNPVTKTWSQVPDMYN 573
W M +R + + IYV GG G R+ N E Y+P T+TW+++ M
Sbjct: 130 WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE 189
Query: 574 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 632
R N + + D IFA+GG NG+ + +VE YD K +EW + M ++ C +G
Sbjct: 190 ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-WKGVTVKCAAVG 247
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 12/239 (5%)
Query: 399 IYVIGGFDGNEYYNSCR--CFNAVTKVW-KEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQ 455
+Y++GG ++ + R C+N V W ++ P + + A + + G G
Sbjct: 58 VYILGG---SQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGN 114
Query: 456 RRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNC----LNSCEVY 511
E Y+ W M +R G IY+ GG G+N LNSCEVY
Sbjct: 115 SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVY 174
Query: 512 DPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 571
DP WT + PM R + + I+ +GG NG+ + N E Y+ W V M
Sbjct: 175 DPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234
Query: 572 YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 630
+ +++ + GF GV + H+ Y+ +TD+W + + + +++C+I
Sbjct: 235 PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAF--PVTSCLI 291
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 8/196 (4%)
Query: 336 PTP--EIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTA 393
PTP +A +I + G G S E YDTR + W + + R HG
Sbjct: 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM--LTQRCSHGMV 146
Query: 394 VIGYNIYVIGGFDGN----EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAM 449
IYV GG GN NSC ++ T+ W E+ PM R D I+A+
Sbjct: 147 EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV 206
Query: 450 GGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCE 509
GG NG ++VE Y+ N+W +++PM + + +Y+ GF G L
Sbjct: 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL 266
Query: 510 VYDPECNQWTLIEPMR 525
Y+ E ++W +R
Sbjct: 267 EYNTETDKWVANSKVR 282
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 10/240 (4%)
Query: 84 NEFREKNLLCDATIVL--ADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEI--- 138
NE R + L CD T+ A F HR++L A ++YF L + + + VE+
Sbjct: 42 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQF-SESRSGRVEMRKW 100
Query: 139 ---PGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPR 195
PG + + ++IEY Y ++ ++ +V +L D F + + ++ C +F+K+
Sbjct: 101 SSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLS 160
Query: 196 NCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKS 255
NC I + + +L I RNF V ++ EE + V S
Sbjct: 161 NCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQD-EEFYTLPFHLIRDWLSDLEITVDS 219
Query: 256 EETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPII 315
EE ++E +++W+ + E R+++ L K +RL ++ + VK V + C ++
Sbjct: 220 EEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLV 279
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
Query: 386 PRAYHGTAVIGYNIYVIGGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 442
PR G +IYV+GG DG +S C++ ++ W E P+ + + H
Sbjct: 88 PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH 147
Query: 443 HDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 501
D++Y +GG R+ N + Y+ + +W +APM RS AT G+I + G
Sbjct: 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD 207
Query: 502 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGM---------SRM 552
+S EVY N+W E RS +S ++ +Y IGGF + + +
Sbjct: 208 TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267
Query: 553 CNGEKYNPVTKTWSQV 568
+ +YN K W V
Sbjct: 268 NDIWRYNEEEKKWEGV 283
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 12/210 (5%)
Query: 434 RCYVSTAVHHDVIYAMGG--YNGQRRQNSVEKY----NYTENQWSLIAPMNVERSDASAT 487
+ +VS + ++ GG YN +++ + Y ++ +++W + P+ R
Sbjct: 36 KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLG 95
Query: 488 TLQGKIYITGGF---NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIG 544
IY+ GG +G CL+S YD +W +P+ + G + +++ + +YVIG
Sbjct: 96 EALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIG 155
Query: 545 GFNGMSRMCNGEK--YNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHV 602
G G R C + Y+P W ++ M RS F V D I G
Sbjct: 156 G-KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSA 214
Query: 603 ECYDEKTDEWYEATDMNIYRSALSACVIMG 632
E Y ++W RS+LS ++G
Sbjct: 215 EVYSITDNKWAPFEAFPQERSSLSLVSLVG 244
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Query: 417 FNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGG---YNGQRRQNSVEKYNYTENQWSL 473
F+ + W + P+ RC + IY +GG +G+R +SV Y+ +W
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE 131
Query: 474 IAPMNVERSDASATTLQGKIYITGGFNG-HNCLNSCEVYDPECNQWTLIEPMRHRRSGVS 532
P+ + + +Y+ GG CLN VYDP+ +W + PM+ RS
Sbjct: 132 SDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191
Query: 533 CIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGG 592
+ I V G + E Y+ W+ RS+ ++ + ++AIGG
Sbjct: 192 ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251
Query: 593 FNGVTT 598
F + T
Sbjct: 252 FATLET 257
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 363 DFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYN--IYVIGGFDGNEYYNSCRCFNAV 420
D V YD + +W + DP+ P +G V+ + +YVIGG + + C
Sbjct: 117 DSVMCYDRLSFKW---GESDPL-PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172
Query: 421 TKV-WKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV 479
K WKE+APM R VH I G +S E Y+ T+N+W+
Sbjct: 173 KKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232
Query: 480 ERSDASATTLQGKIYITGGF 499
ERS S +L G +Y GGF
Sbjct: 233 ERSSLSLVSLVGTLYAIGGF 252
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 8/239 (3%)
Query: 84 NEFREKNLLCDATIVL--ADNSHFPIHRNILCACSDYFRALFTTSLHDQ-----EKFSLV 136
NE R + L CD T+ A F HR++L A ++YF L + + E
Sbjct: 24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWS 83
Query: 137 EIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRN 196
PG + + ++IEY Y ++ ++ +V +L D F + + ++ C +F+K+ N
Sbjct: 84 SEPGPEPDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN 143
Query: 197 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFXXXXXXXXXXXXXXLNVKSE 256
C I + + +L I RNF V ++ EE + V SE
Sbjct: 144 CVAIHSLAHXYTLSQLALKAADXIRRNFHKVIQD-EEFYTLPFHLIRDWLSDLEITVDSE 202
Query: 257 ETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPII 315
E ++E +++W+ + E R+++ L K +RL + + VK V + C ++
Sbjct: 203 EVLFETVLKWVQRNAEERERYFEELFKLLRLSQXKPTYLTRHVKPERLVANNEVCVKLV 261
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 5/181 (2%)
Query: 369 DTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFD--GNEYYNSCRCFNAVTKVWKE 426
D + WV + + R G + IYV+ G D +S C++ V W E
Sbjct: 84 DNVSSEWVGLPPLP--SARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE 141
Query: 427 IAPMNFKRCYVSTAVHHDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMNVERSDAS 485
+ + K + H+ +IY +GG ++ N V YN + W +APM RS
Sbjct: 142 VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG 201
Query: 486 ATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 545
+GKI I GG S E +D + N+W ++ RS +S ++ +Y IGG
Sbjct: 202 VAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261
Query: 546 F 546
F
Sbjct: 262 F 262
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 18/186 (9%)
Query: 363 DFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYN--IYVIGG-FDGNEYYNSCRCFNA 419
D V YD A +W +++ + P +G VI +N IY +GG D + N +N
Sbjct: 127 DSVLCYDPVAAKWSEVKNL----PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182
Query: 420 VTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV 479
WK++APM R A+H I GG SVE ++ N+W ++
Sbjct: 183 KKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ 242
Query: 480 ERSDASATTLQGKIYITGGFN---------GHNCLNSCEVYDPECNQWT-LIEPMRHRRS 529
ERS S +L G +Y GGF +N Y+ + +W +++ +R+ S
Sbjct: 243 ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRY-AS 301
Query: 530 GVSCIA 535
G SC+A
Sbjct: 302 GASCLA 307
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 9/208 (4%)
Query: 434 RCYVSTAVHHDVIYAMGGY--NGQRRQNSVEKYNY----TENQWSLIAPMNVERSDASAT 487
R + S + +Y +GG + + + ++ Y + ++W + P+ R
Sbjct: 47 RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLG 106
Query: 488 TLQGKIYITGG--FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 545
+ KIY+ G L+S YDP +W+ ++ + + G + I+++ IY +GG
Sbjct: 107 EVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGG 166
Query: 546 FNGMSRMCNGE-KYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVEC 604
+ N YNP W + M PRS F + + I GG VE
Sbjct: 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEA 226
Query: 605 YDEKTDEWYEATDMNIYRSALSACVIMG 632
+D KT++W T+ RS++S + G
Sbjct: 227 FDLKTNKWEVMTEFPQERSSISLVSLAG 254
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 18/245 (7%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRC------FNAVTKVWKEIAPMNFKRCYVST 439
PR + +YV+GG +E + V+ W + P+ RC
Sbjct: 46 PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL 105
Query: 440 AVHHDVIYAMGGYNGQRRQ--NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITG 497
D IY + G + Q +SV Y+ +WS + + ++ + + G IY G
Sbjct: 106 GEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLG 165
Query: 498 G-FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGE 556
G + C N +Y+P+ W + PM+ RS + I + GG + E
Sbjct: 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVE 225
Query: 557 KYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDE 607
++ T W + + RS+ ++ + ++AIGGF + T + + Y++
Sbjct: 226 AFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED 285
Query: 608 KTDEW 612
EW
Sbjct: 286 DKKEW 290
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTT-SLHDQEKFS 134
S + LNE R + LLCD ++L + FP HR++L ACS YF+ LFT+ ++ DQ+ +
Sbjct: 19 SSDILSGLNEQRTQGLLCD-VVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQ--N 75
Query: 135 LVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 190
+ EI V A +T+L+++AY L ++ NV +L A + +C D + R
Sbjct: 76 VYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLDR 131
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTT-SLHDQEKFS 134
S + LNE R + LLCD ++L + FP HR++L ACS YF+ LFT+ ++ DQ+ +
Sbjct: 9 SSDILSGLNEQRTQGLLCD-VVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQ--N 65
Query: 135 LVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFI 188
+ EI V A +T+L+++AY L ++ NV +L A + +C D +
Sbjct: 66 VYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 72 DRAMSVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRA-LFTTSLHDQ 130
D + + ++AL+ FRE++ CDA +VL D P+ +NIL A S Y R L D
Sbjct: 11 DPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDD 69
Query: 131 EKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 190
+E+ G+ V +++Y + ++ + ED + ++ A D ++ + LCC+F++
Sbjct: 70 GSTYKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEG 129
Query: 191 LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDV 227
NC GI F+ + + +Y+ +F DV
Sbjct: 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDV 166
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S ++ LN+ R+ LLCD T V+ D HF H+ +L ACS+YF+ LF DQ+
Sbjct: 9 SQHVLEQLNQQRQLGLLCDCTFVV-DGVHFKAHKAVLAACSEYFKMLFV----DQKDVVH 63
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDL--CCDFIKRL 191
++I +A+ + ++E+ Y KL ++ +NV +L F M QD+ C +K L
Sbjct: 64 LDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQM---QDIITACHALKSL 116
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S ++ LN+ R+ LLCD T V+ D HF H+ +L ACS+YF+ LF DQ+
Sbjct: 11 SQHVLEQLNQQRQLGLLCDCTFVV-DGVHFKAHKAVLAACSEYFKMLFV----DQKDVVH 65
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDL--CCDFIKRL 191
++I +A+ + ++E+ Y KL ++ +NV +L F M QD+ C +K L
Sbjct: 66 LDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQM---QDIITACHALKSL 118
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S + +LN+ R+K++LCD T VL + F HR++L ACS YF + + +L
Sbjct: 20 STNVLLSLNDQRKKDVLCDVT-VLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTL 78
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
E V LI++AY KL +++DNV + +F + ++ C F+K
Sbjct: 79 PE--EVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLK 130
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S + +LN+ R+K++LCD TI + F HR++L ACS YF + + +L
Sbjct: 13 STNVLLSLNDQRKKDVLCDVTI-FVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITL 71
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
E V LI++AY KL ++++NV + +F + ++ C F+K
Sbjct: 72 PE--EVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 72 DRAMSVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRA-LFTTSLHDQ 130
D + + ++AL+ FRE++ CDA +VL D P+ +NIL A S Y R L D
Sbjct: 27 DPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDD 85
Query: 131 EKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
+E+ G+ VM +++Y + ++ + ED + ++ A D ++ + LCC+F++
Sbjct: 86 GSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 80 MQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYF-RALFTTSLHDQEKFSLVEI 138
+ LN+ R+K++LCD T+++ + F HR +L ACS+YF +AL + +D +V +
Sbjct: 20 LLGLNDQRKKDILCDVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDL----VVSL 74
Query: 139 PG-VDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFI 188
P V A L+++AY KL ++ +N+ ++ +F M +D C F+
Sbjct: 75 PEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 83 LNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEI-PGV 141
LN R +++L D IV++ F H+ +L ACS F ++FT L + S++ + P +
Sbjct: 20 LNRLRSRDILTDVVIVVS-REQFRAHKTVLMACSGLFYSIFTDQL--KRNLSVINLDPEI 76
Query: 142 DASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
+ L+++ Y +L++ E N+ +++ + M D C FIK
Sbjct: 77 NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 61 AIKNKKNFSSIDRAMSVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFR 120
+++++K S+ D S + +LNE R L CD T+++ D F H+NIL A S YF
Sbjct: 2 SMESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRK-FRAHKNILSASSTYFH 60
Query: 121 ALFTTSLHDQEKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKA 180
LF+ + +VE+ + A + ++ Y Y K+ ++ L+ +
Sbjct: 61 QLFSVAGQ------VVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKS-------G 107
Query: 181 QDLCCDFIKRLTTP 194
Q L FI L P
Sbjct: 108 QLLGVKFIAELGVP 121
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 62 IKNKKNFSSIDRAMSVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRA 121
++++K S+ D S + +LNE R L CD T+++ D F H+NIL A S YF
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRK-FRAHKNILSASSTYFHQ 59
Query: 122 LFTTSLHDQEKFSLVEIPGVDASVMTSLIEYAYLRKL 158
LF+ + +VE+ + A + ++ Y Y K+
Sbjct: 60 LFSVAGQ------VVELSFIRAEIFAEILNYIYSSKI 90
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 83 LNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEI---P 139
LN R +++L D IV++ F H+ +L ACS F ++FT DQ K +L I P
Sbjct: 23 LNRLRSRDILTDVVIVVS-REQFRAHKTVLMACSGLFYSIFT----DQLKCNLSVINLDP 77
Query: 140 GVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
++ L+++ Y +L++ E N+ +++ + M D C FIK
Sbjct: 78 EINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 127
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 80 MQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIP 139
++ LN+ RE LCD TIV+ + F HRN+L + S+YF A++ ++ E ++
Sbjct: 10 LERLNKQREAGFLCDCTIVIGE-FQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQS 65
Query: 140 GVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLC 184
V A L+E+ Y L++ NV + A D+ + + C
Sbjct: 66 QVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKC 110
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
SV+ +Q LN+ REK CDAT+ + F H ++L CS +F++L+ D S+
Sbjct: 8 SVRVLQELNKQREKGQYCDATLDVG-GLVFKAHWSVLACCSHFFQSLYG----DGSGGSV 62
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDF 187
V +P A + L+++ Y L +T N +LLA + +A +LC F
Sbjct: 63 V-LPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSF 113
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 80 MQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIP 139
++ LNE R + L CD ++V+ ++ F HR +L A S YFR LF S + ++VE+P
Sbjct: 21 LECLNEQRLQGLYCDVSVVVKGHA-FKAHRAVLAASSSYFRDLFNNS-----RSAVVELP 74
Query: 140 -GVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTT 193
V ++ + Y +L + + L+ F + + + +F ++++
Sbjct: 75 AAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 77 VQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLV 136
V+ +Q LN+ REK CDAT+ + F H ++L CS +F+ ++ D S+V
Sbjct: 10 VRVLQELNKQREKGQYCDATLDVG-GLVFKAHWSVLACCSHFFQRIYG----DGTGGSVV 64
Query: 137 EIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDF 187
+P A + L+++ Y L +T N +LLA + +A +LC F
Sbjct: 65 -LPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSF 114
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 490 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FN 547
G+I +TGG N +YD + W M+ R S + ++ IGG F+
Sbjct: 258 NGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 313
Query: 548 GMSRMCNGEKYNPVTKTWSQVPD 570
G NGE Y+P +KTW+ +P+
Sbjct: 314 GGVFEKNGEVYSPSSKTWTSLPN 336
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FNG 548
G+I +TGG N +YD + W M+ R S + ++ IGG F+G
Sbjct: 237 GQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSG 292
Query: 549 MSRMCNGEKYNPVTKTWSQVPD 570
NGE Y+P +KTW+ +P+
Sbjct: 293 GVFEKNGEVYSPSSKTWTSLPN 314
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FNG 548
G+I +TGG N +YD + W M+ R S + ++ IGG ++G
Sbjct: 254 GQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSG 309
Query: 549 MSRMCNGEKYNPVTKTWSQVPD 570
NGE Y+P +KTW+ +P+
Sbjct: 310 GVFEKNGEVYSPSSKTWTSLPN 331
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FNG 548
G+I +TGG N +YD + W M+ R S + ++ IGG ++G
Sbjct: 237 GQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSG 292
Query: 549 MSRMCNGEKYNPVTKTWSQVPD 570
NGE Y+P +KTW+ +P+
Sbjct: 293 GVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FNG 548
G+I +TGG N +YD + W M+ R S + ++ IGG ++G
Sbjct: 237 GQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSG 292
Query: 549 MSRMCNGEKYNPVTKTWSQVPD 570
NGE Y+P +KTW+ +P+
Sbjct: 293 GVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FNG 548
G+I +TGG N +YD + W M+ R S + ++ IGG +G
Sbjct: 237 GQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSG 292
Query: 549 MSRMCNGEKYNPVTKTWSQVPD 570
NGE Y+P +KTW+ +P+
Sbjct: 293 GVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGG-FNG 548
G+I +TGG N +YD + W M+ R S + ++ IGG +G
Sbjct: 237 GQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSG 292
Query: 549 MSRMCNGEKYNPVTKTWSQVPD 570
NGE Y+P +KTW+ +P+
Sbjct: 293 GVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 106 PIHRNILCACSDYFRALFTTSLHDQEKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNV 165
P H+ +L S F A F L E S + IP V+ + L++Y Y ++ + D V
Sbjct: 25 PAHKYVLAVGSSVFYAXFYGDL--AEVKSEIHIPDVEPAAFLILLKYXYSDEIDLEADTV 82
Query: 166 ASLLLATDFFCMSKAQDLCCDFIK 189
+ L A + + C +F++
Sbjct: 83 LATLYAAKKYIVPALAKACVNFLE 106
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 89/254 (35%), Gaps = 52/254 (20%)
Query: 369 DTRAD--RWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDGN-----EYYNSCRCFNAVT 421
DT+A +W + P GPR +A I N+YV GG N + +N +N T
Sbjct: 37 DTQAKDKKWTALAAF-PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95
Query: 422 KVWKEI---APMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 478
W ++ AP T VH+ Y GG N E N + I +N
Sbjct: 96 NSWVKLXSHAPXGXAGHV--TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN 153
Query: 479 VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLI-EPMRHRRSGVSCIAYH 537
D A + Y F +DP QW+ E + +G + +
Sbjct: 154 AHYFDKKA-----EDYFFNKF--------LLSFDPSTQQWSYAGESPWYGTAGAAVVNKG 200
Query: 538 ECIYVIGG---------------FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV 582
+ ++I G F G + N K PV+ PD FA
Sbjct: 201 DKTWLINGEAKPGLRTDAVFELDFTGNNLKWN--KLAPVSS-----PDGV--AGGFAGIS 251
Query: 583 IDDMIFAIG-GFNG 595
D +IFA G GF G
Sbjct: 252 NDSLIFAGGAGFKG 265
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
Zebrafish Danio Rerio
Length = 199
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 416 CFNAVTKVW-KEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 474
C++A+ + K++ +N K C S H++ +A+G Y+ Q R ++ Y W+ I
Sbjct: 71 CYSAIGRTGGKQVVSLNRKGCVYSGIAQHELNHALGFYHEQSRS---DRDQYVRINWNNI 127
Query: 475 AP 476
+P
Sbjct: 128 SP 129
>pdb|1SQH|A Chain A, X-Ray Structure Of Drosophila Malonogaster Protein Q9vr51
Northeast Structural Genomics Consortium Target Fr87
Length = 312
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 155 LRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEE 214
L + + E +LL D ++ ++L PR CFG +L D FC K+ +
Sbjct: 110 LEQTQLIEWTQGALLTNVDLGFCNRVKELAVSRGVTAIQPRQCFGXVLSHEDAFCAKVPD 169
Query: 215 WTRKYILRNF 224
++ +R
Sbjct: 170 LPSEFEIRRL 179
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 415 RCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMG 450
+ F KVW ++ P+NF R Y TA D++ + G
Sbjct: 33 KAFRKAFKVWSDVTPLNFTRIYDGTA---DIMISFG 65
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 260 WELIIRWIDYD-PENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIET 318
WE I+W++ + PEN K+++++L++++ L+ + + + Y E + +
Sbjct: 29 WERYIQWVEENFPEN-KEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQF 87
Query: 319 FKFLYD 324
F+FLY+
Sbjct: 88 FEFLYN 93
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 260 WELIIRWIDYD-PENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIET 318
WE I+W++ + PEN K+++++L++++ L+ + + + Y E + +
Sbjct: 37 WERYIQWVEENFPEN-KEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQF 95
Query: 319 FKFLYD 324
F+FLY+
Sbjct: 96 FEFLYN 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,409,344
Number of Sequences: 62578
Number of extensions: 877675
Number of successful extensions: 2101
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1843
Number of HSP's gapped (non-prelim): 105
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)