RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14726
(712 letters)
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 377 bits (969), Expect = e-126
Identities = 104/297 (35%), Positives = 150/297 (50%), Gaps = 9/297 (3%)
Query: 341 ARPRV-PHEILFAIGGW-SGGSPTDFVETYDTRADRWVKIEQVDPM-GPRAYHGTAVIGY 397
R R+ +E+L +GG+ S SP D VE YD + W + + R Y + +
Sbjct: 7 TRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW---SFLPSITRKRRYVASVSLHD 63
Query: 398 NIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNG 454
IYVIGG+DG +S C + VW +APMN +R D+IY GG++G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 455 QRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPE 514
RR S+E+Y+ +QWS++ M R A G IY GG++G N LNS E YDP
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 515 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 574
WT + PM +RSG ++ IYV+GGF+G + + + E YN T +W+ V M P
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243
Query: 575 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 631
R V+ ++AI G++G + + +ECYD D W T M R CV+
Sbjct: 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 291 bits (746), Expect = 3e-93
Identities = 87/252 (34%), Positives = 136/252 (53%), Gaps = 5/252 (1%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHD 444
PR + V+GGF + + ++ T+ W + + KR YV++ HD
Sbjct: 5 PRTRARLGANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63
Query: 445 VIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMNVERSDASATTLQGKIYITGGFNG 501
IY +GGY+G+ R +SVE +YT ++ W +APMNV R A ATTL IY++GGF+G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 502 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 561
S E YDP +QW+++ M+ R G + IY +GG++G++ + + EKY+P
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 562 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 621
T W+ V M RS + +++D I+ +GGF+G + VE Y+ +TD W T M
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243
Query: 622 RSALSACVIMGL 633
R + A V+ G
Sbjct: 244 RCYVGATVLRGR 255
Score = 283 bits (727), Expect = 2e-90
Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 1/237 (0%)
Query: 350 LFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 408
++ IGG+ G S VE D AD V PM R G +G IYV GGFDG+
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS 124
Query: 409 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTE 468
+ S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 125 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184
Query: 469 NQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRR 528
W+ + PM +RS A L IY+ GGF+G L+S E Y+ + WT + M R
Sbjct: 185 GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 529 SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD 585
V +Y I G++G S + + E Y+P+ +W V M R + + V+ +
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
Score = 221 bits (566), Expect = 7e-67
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 5/207 (2%)
Query: 430 MNFKRCYVSTAVHHDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMNVERSDASATT 488
M R + +V+ +GG+ Q+ + VEKY+ +WS + + +R ++ +
Sbjct: 2 MQGPRTRARLGAN-EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 489 LQGKIYITGGFNGHNCLNSCEVYDPECNQ---WTLIEPMRHRRSGVSCIAYHECIYVIGG 545
L +IY+ GG++G + L+S E D ++ W + PM RR + IYV GG
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG 120
Query: 546 FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECY 605
F+G R + E+Y+P WS + DM R + V +I+ +GG++G+ + VE Y
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY 180
Query: 606 DEKTDEWYEATDMNIYRSALSACVIMG 632
D T W T M RS ++
Sbjct: 181 DPHTGHWTNVTPMATKRSGAGVALLND 207
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 370 bits (953), Expect = e-124
Identities = 90/299 (30%), Positives = 146/299 (48%), Gaps = 11/299 (3%)
Query: 342 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPM-GPRAYHGTAVIGY 397
R R P +++ +GG VE YD + +RW QV + R G +
Sbjct: 7 RLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERW---HQVAELPSRRCRAGMVYMAG 62
Query: 398 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRR 457
++ +GGF+G+ + ++ V W +A M +R + AV + ++YA+GG++G
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 458 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG--HNCLNSCEVYDPEC 515
+SVE YN N+W +APMN RS + G +Y GG++ CL++ E Y+
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182
Query: 516 NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 575
N+WT I M RRSG + +Y +GG +G + E Y+P T W QV DM R
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242
Query: 576 SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW-YEATDMNIYRSALSACVIMGL 633
N + ++ +++ +GG +G + VE Y+ TD+W ++ M+ RS VI
Sbjct: 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKR 301
Score = 294 bits (756), Expect = 9e-95
Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 2/252 (0%)
Query: 384 MGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHH 443
M R T + + V+ G + S C++ + W ++A + +RC
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 444 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN 503
+++A+GG+NG R +V+ Y+ ++QW+ +A M RS A L G +Y GGF+G
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121
Query: 504 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMC--NGEKYNPV 561
L+S E Y+ + N+W + PM RRS V +Y +GG++ SR C E YN
Sbjct: 122 GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181
Query: 562 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 621
T W+ + +M RS + V++++++A+GG +G VE YD T+ W + DMN+
Sbjct: 182 TNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC 241
Query: 622 RSALSACVIMGL 633
R C + GL
Sbjct: 242 RRNAGVCAVNGL 253
Score = 278 bits (714), Expect = 2e-88
Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 7/242 (2%)
Query: 350 LFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 408
+FA+GG++G V++YD D+W + M R+ G AV+ +Y +GGFDG+
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 409 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQ--NSVEKYNY 466
+S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE YN
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 467 TENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 526
T N+W+ IA M+ RS A L +Y GG +G S EVYDP N W + M
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 527 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDD 585
R A + +YV+GG +G + + E YNP T W+ V M RS + VID
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
Query: 586 MI 587
+
Sbjct: 301 RL 302
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 367 bits (943), Expect = e-122
Identities = 103/298 (34%), Positives = 150/298 (50%), Gaps = 14/298 (4%)
Query: 342 RPRVPH-----EILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPM-GPRAYHGTAVI 395
PR H +++ GG+ S ++E Y+ W+++ + PR+ V+
Sbjct: 14 VPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVV 69
Query: 396 GYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGG 451
G +Y +GG DGN ++ C+N +T W APM+ R + V IYA+GG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 452 YNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVY 511
+G NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y
Sbjct: 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY 189
Query: 512 DPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 571
PE N+W +I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M
Sbjct: 190 YPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249
Query: 572 YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 629
+ RS I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 250 KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 283 bits (726), Expect = 3e-90
Identities = 82/252 (32%), Positives = 122/252 (48%), Gaps = 6/252 (2%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDV 445
PR H V IY GG+ + + +N W +A + R ++ V +
Sbjct: 15 PRGSHAPKVGRL-IYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 446 IYAMGGYN----GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 501
+YA+GG N G ++++ YN NQWS APM+V R+ + G IY GG +G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 502 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 561
NS E Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P
Sbjct: 133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192
Query: 562 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 621
W + M RS + V+ + I+A GG++G + VE YD +T+ W M
Sbjct: 193 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252
Query: 622 RSALSACVIMGL 633
RSAL V G
Sbjct: 253 RSALGITVHQGR 264
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 344 bits (885), Expect = e-114
Identities = 72/313 (23%), Positives = 112/313 (35%), Gaps = 20/313 (6%)
Query: 342 RPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPM-GPRAYHGTAVIGYNI 399
RPR H+ A+ G GS ++ + W + R +
Sbjct: 5 RPRRKKHDYRIALFG---GSQPQSCRYFNPKDYSW---TDIRCPFEKRRDAACVFWDNVV 58
Query: 400 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYN-GQRRQ 458
Y++GG C+N V W R ++ IY GG G
Sbjct: 59 YILGGSQLF-PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 459 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN----CLNSCEVYDPE 514
E Y+ W M +R G IY+ GG G+N LNSCEVYDP
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177
Query: 515 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 574
WT + PM R + + I+ +GG NG+ + N E Y+ W V M
Sbjct: 178 TETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237
Query: 575 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLP 634
+ +++ + GF GV + H+ Y+ +TD+W + + +
Sbjct: 238 GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC----- 292
Query: 635 NVYDYIHQHRDSL 647
V D + ++L
Sbjct: 293 -VVDTCGANEETL 304
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 327 bits (840), Expect = e-107
Identities = 60/317 (18%), Positives = 114/317 (35%), Gaps = 31/317 (9%)
Query: 342 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYN 398
PR +++ + + YD + PR +
Sbjct: 7 IPRHGMFVKDLILLVNDTA-------AVAYDPMENECYLTAL-AEQIPRNHSSIVTQQNQ 58
Query: 399 IYVIGGFDGNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGY 452
+YV+GG +E + + V+ W + P+ RC D IY + G
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK 118
Query: 453 N--GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG-FNGHNCLNSCE 509
+ + +SV Y+ +WS + + ++ + + G IY GG + C N
Sbjct: 119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF 178
Query: 510 VYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 569
+Y+P+ W + PM+ RS + I + GG + E ++ T W +
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238
Query: 570 DMYNPRSNFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNI 620
+ RS+ ++ + ++AIGGF + T + + Y++ EW
Sbjct: 239 EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI- 297
Query: 621 YRSALSACVIMGLPNVY 637
R A A + N++
Sbjct: 298 -RYASGASCLATRLNLF 313
Score = 262 bits (672), Expect = 3e-82
Identities = 59/264 (22%), Positives = 98/264 (37%), Gaps = 26/264 (9%)
Query: 350 LFAIGGWSGG------SPTDFVETYDTRADRWVKIEQVDPMG-PRAYHGTAVIGYNIYVI 402
++ +GG + D + WV + P+ R G + IYV+
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVV 115
Query: 403 GGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGY-NGQRRQN 459
G D +S C++ V W E+ + K + H+ +IY +GG + ++ N
Sbjct: 116 AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175
Query: 460 SVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWT 519
V YN + W +APM RS +GKI I GG S E +D + N+W
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235
Query: 520 LIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG---------EKYNPVTKTWSQVPD 570
++ RS +S ++ +Y IGGF + KY K W+ +
Sbjct: 236 VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLK 295
Query: 571 MYNPRSNFAIEVIDDMI--FAIGG 592
R + + F +
Sbjct: 296 E--IRYASGASCLATRLNLFKLSK 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 319 bits (819), Expect = e-104
Identities = 63/309 (20%), Positives = 109/309 (35%), Gaps = 29/309 (9%)
Query: 347 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFD 406
+++F I YD A+ + P+ + ++V GG
Sbjct: 4 QDLIFMISEEG-------AVAYDPAANEC-YCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 407 GNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGY---NGQRR 457
NE F+ + W + P+ RC + IY +GG +G+R
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 458 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN-GHNCLNSCEVYDPECN 516
+SV Y+ +W P+ + + +Y+ GG CLN VYDP+
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 517 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS 576
+W + PM+ RS + I V G + E Y+ W+ RS
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 577 NFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNIYRSALSA 627
+ ++ + ++AIGGF + T + + Y+E+ +W A A
Sbjct: 236 SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGA 293
Query: 628 CVIMGLPNV 636
+ NV
Sbjct: 294 TFLPVRLNV 302
Score = 271 bits (694), Expect = 2e-85
Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 25/271 (9%)
Query: 350 LFAIGGW------SGGSPTDFVETYDTRADRWVKIEQVDPMG-PRAYHGTAVIGYNIYVI 402
+F GG + + +D W+ + P+ PR G +IYV+
Sbjct: 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVV 104
Query: 403 GGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYN-GQRRQ 458
GG DG +S C++ ++ W E P+ + + H D++Y +GG ++
Sbjct: 105 GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164
Query: 459 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 518
N + Y+ + +W +APM RS AT G+I + G +S EVY N+W
Sbjct: 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224
Query: 519 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG---------EKYNPVTKTWSQVP 569
E RS +S ++ +Y IGGF + +YN K W V
Sbjct: 225 APFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284
Query: 570 DMYNPRSNFAIEVIDDMIFAIGGFNGVTTIY 600
+ + + +Y
Sbjct: 285 RE--IAYAAGATFLPVRLNVLRLTKMAENLY 313
Score = 46.6 bits (111), Expect = 2e-05
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 583 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA-TDMNIYRSALSACVIMGLPNVY 637
+ D+IF I YD +E Y A + ++ +S V+
Sbjct: 3 LQDLIFMISEEG-------AVAYDPAANECYCASLSSQVPKNHVSLVTKEN--QVF 49
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 290 bits (744), Expect = 1e-93
Identities = 72/243 (29%), Positives = 134/243 (55%), Gaps = 4/243 (1%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKF-S 134
+ + ++AL+ FRE++ CDA +V D P+ +NIL A S Y R + +
Sbjct: 15 AARLLRALSSFREESRFCDAHLV-LDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTY 73
Query: 135 LVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTP 194
+E+ G+ VM +++Y + ++ + ED + ++ A D ++ + LCC+F++
Sbjct: 74 KIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAA 133
Query: 195 RNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVK 254
NC GI F+ + + +Y+ +F DV+ +EE + +S Q+L+E+IS ++LNV
Sbjct: 134 ENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSS-TEEFLELSPQKLKEVISLEKLNVG 192
Query: 255 SEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQ-STPECRP 313
+E V+E +IRWI +D E RK H+ +M + + L++ + RE++ + P V+ EC
Sbjct: 193 NERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSN 252
Query: 314 III 316
I +
Sbjct: 253 IPL 255
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 290 bits (744), Expect = 2e-93
Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 10/254 (3%)
Query: 76 SVQAMQALNEFREKNLLCDATIVL--ADNSHFPIHRNILCACSDYFRALFTTSLHDQEKF 133
+ NE R + L CD T+ A F HR++L A ++YF L + +
Sbjct: 16 CSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRS- 74
Query: 134 SLVEI------PGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDF 187
VE+ PG + + ++IEY Y ++ ++ +V +L D F + + ++ C +F
Sbjct: 75 GRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEF 134
Query: 188 IKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIIS 247
+K+ NC I + + +L I RNF V + EE + + + +S
Sbjct: 135 LKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQ-DEEFYTLPFHLIRDWLS 193
Query: 248 SDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQS 307
E+ V SEE ++E +++W+ + E R+++ L K +RL ++ + VK V +
Sbjct: 194 DLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVAN 253
Query: 308 TPECRPIIIETFKF 321
C ++ + +
Sbjct: 254 NEVCVKLVADAVER 267
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 196 bits (500), Expect = 7e-57
Identities = 47/312 (15%), Positives = 96/312 (30%), Gaps = 45/312 (14%)
Query: 350 LFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDGN- 408
++ G +G + + + +W + P GPR +A I N+YV GG N
Sbjct: 22 VYIGLGSAGTA--WYKLDTQAKDKKWTALAAF-PGGPRDQATSAFIDGNLYVFGGIGKNS 78
Query: 409 ----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEK 463
+ +N +N T W ++ T VH+ Y GG N E
Sbjct: 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFED 138
Query: 464 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 523
N + I +N Y + +DP QW+
Sbjct: 139 LNEAGKDSTAIDKINAH-------------YFDKKAEDYFFNKFLLSFDPSTQQWSYAGE 185
Query: 524 M-RHRRSGVSCIAYHECIYVIGGFNGMSRMCN---GEKYNPVTKTWSQVPDMYNPRS--N 577
+ +G + + + ++I G + + W+++ + +P
Sbjct: 186 SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245
Query: 578 FAIEVIDDMIFAIGGFN-----------------GVTTIYHVECYDEKTDEWYEATDMNI 620
+ +D + GG G+ Y + + +W ++ +++
Sbjct: 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ 305
Query: 621 YRSALSACVIMG 632
R+ +
Sbjct: 306 GRAYGVSLPWNN 317
Score = 171 bits (435), Expect = 9e-48
Identities = 47/260 (18%), Positives = 79/260 (30%), Gaps = 28/260 (10%)
Query: 386 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVHHD 444
P A+ +Y+ G G +Y A K W +A R ++A
Sbjct: 9 PFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQATSAFIDG 66
Query: 445 VIYAMGGYNGQRRQ-----NSVEKYNYTENQWSLIAPMN-VERSDASATTLQGKIYITGG 498
+Y GG N V KYN N W + + + GK Y+TGG
Sbjct: 67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG 126
Query: 499 FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 558
N + E + T I+ + Y FN +
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY--------FFNK-----FLLSF 173
Query: 559 NPVTKTWSQVPDM-YNPRSNFAIEVIDDMIFAIGGF--NGVTTIY-HVECYDEKTDEWYE 614
+P T+ WS + + + A+ D + I G G+ T + +W +
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK 233
Query: 615 ATDMNI--YRSALSACVIMG 632
++ + A +
Sbjct: 234 LAPVSSPDGVAGGFAGISND 253
Score = 162 bits (410), Expect = 3e-44
Identities = 41/276 (14%), Positives = 80/276 (28%), Gaps = 46/276 (16%)
Query: 350 LFAIGGWSGGS-----PTDFVETYDTRADRWVKIEQVDPMG-PRAYHGTAVIGYNIYVIG 403
L+ GG S + V Y+ + + WVK+ + A H T V YV G
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL--MSHAPMGMAGHVTFVHNGKAYVTG 125
Query: 404 GFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEK 463
G + N + N K I +N +N +
Sbjct: 126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFFN-----KFLLS 172
Query: 464 YNYTENQWSLIAPMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVY----DPECNQW 518
++ + QWS + A+ K ++ G L + V+ +W
Sbjct: 173 FDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG-LRTDAVFELDFTGNNLKW 231
Query: 519 TLI--EPMRHRRSGVSCIAYHECIYVIGGFN-----------------GMSRMCNGEKYN 559
+ +G ++ + GG G+ + + + +
Sbjct: 232 NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL 291
Query: 560 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNG 595
W + ++ R+ ++ + IGG
Sbjct: 292 WHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327
Score = 154 bits (390), Expect = 1e-41
Identities = 41/215 (19%), Positives = 75/215 (34%), Gaps = 26/215 (12%)
Query: 427 IAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPM-NVERSD 483
+ + A+ +D +Y G G + K + + +W+ +A R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 484 ASATTLQGKIYITGGFNGHNC-----LNSCEVYDPECNQWT-LIEPMRHRRSGVSCIAYH 537
A++ + G +Y+ GG ++ N Y+P+ N W L+ +G ++
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 538 ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT 597
YV GG N E N K + + + + E FN
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFFNK-- 168
Query: 598 TIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 632
+ +D T +W A + Y +A +A V G
Sbjct: 169 ---FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG 200
Score = 130 bits (328), Expect = 3e-33
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 9/175 (5%)
Query: 472 SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-RHRRSG 530
S++ V + +YI G G + +WT + R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 531 VSCIAYHECIYVIGGFNGMSRMCN-----GEKYNPVTKTWSQVPD-MYNPRSNFAIEVID 584
+ +YV GG S KYNP T +W ++ + V +
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 585 DMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDY 639
+ GG N + E +E + +N + A + +
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173
Score = 115 bits (290), Expect = 4e-28
Identities = 26/206 (12%), Positives = 59/206 (28%), Gaps = 25/206 (12%)
Query: 346 PHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGF 405
+ F+ ++D +W + P A G ++I G
Sbjct: 151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-PWYGTAGAAVVNKGDKTWLINGE 209
Query: 406 DGNEYYNS---CRCFNAVTKVWKEIAPMNFKRCYV--STAVHHDVIYAMGGYN------- 453
F W ++AP++ + +D + GG
Sbjct: 210 AKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSREN 269
Query: 454 ----------GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN-GH 502
G ++ S + + + +W ++ R+ + + I GG G
Sbjct: 270 YQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGG 329
Query: 503 NCLNSCEVYDPECNQWTLIEPMRHRR 528
+ + + N+ T ++ + H
Sbjct: 330 KAVTDSVLITVKDNKVT-VQNLEHHH 354
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 147 bits (373), Expect = 8e-42
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
SV+ +Q LN+ REK CDAT+ F H ++L CS +F+ ++
Sbjct: 9 SVRVLQELNKQREKGQYCDATLD-VGGLVFKAHWSVLACCSHFFQRIYGDGTGGS----- 62
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPR 195
V +P A + L+++ Y L +T N +LLA + +A +LC F + + +
Sbjct: 63 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122
Query: 196 NCFGILLFSRDH 207
G+
Sbjct: 123 AQSGLGQSGPSS 134
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 136 bits (344), Expect = 1e-37
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKF-S 134
+ + ++AL+ FRE++ CDA +V D P+ +NIL A S Y R + +
Sbjct: 31 AARLLRALSSFREESRFCDAHLV-LDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTY 89
Query: 135 LVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
+E+ G+ VM +++Y + ++ + ED + ++ A D ++ + LCC+F++
Sbjct: 90 KIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 134 bits (339), Expect = 2e-37
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
SV+ +Q LN+ REK CDAT+ F H ++L CS +F++L+
Sbjct: 8 SVRVLQELNKQREKGQYCDATLD-VGGLVFKAHWSVLACCSHFFQSLYGDGSGGS----- 61
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 190
V +P A + L+++ Y L +T N +LLA + +A +LC F +
Sbjct: 62 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 135 bits (343), Expect = 4e-37
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 2/150 (1%)
Query: 80 MQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIP 139
L E + D + +A F H+ IL A S F A+F + + +K + VEI
Sbjct: 22 ADELGGLWENSRFTDCCLCVAGQE-FQAHKAILAARSPVFSAMFEHEMEESKK-NRVEIN 79
Query: 140 GVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFG 199
V+ V ++ + Y K + LL A D + + + + +C D + + N
Sbjct: 80 DVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 139
Query: 200 ILLFSRDHFCKKLEEWTRKYILRNFVDVAR 229
IL+ + H +L+ +I + DV
Sbjct: 140 ILILADLHSADQLKTQAVDFINYHATDVLE 169
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 133 bits (337), Expect = 4e-37
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
++ LN+ RE LCD TIV F HRN+L + S+YF A++ ++ +
Sbjct: 6 CEHLLERLNKQREAGFLCDCTIV-IGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF--- 61
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
++ V A L+E+ Y L++ NV + A D+ + + C ++
Sbjct: 62 LDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 133 bits (336), Expect = 6e-37
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S ++ LN+ R+ LLCD T V D HF H+ +L ACS+YF+ LF +
Sbjct: 11 SQHVLEQLNQQRQLGLLCDCTFV-VDGVHFKAHKAVLAACSEYFKMLFVDQK------DV 63
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
V + +A+ + ++E+ Y KL ++ +NV +L F M C
Sbjct: 64 VHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 133 bits (336), Expect = 7e-37
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S + LNE R + LLCD I+ + FP HR++L ACS YF+ LFT+ ++ ++
Sbjct: 9 SSDILSGLNEQRTQGLLCDVVIL-VEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQ-NV 66
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFI 188
EI V A +T+L+++AY L ++ NV +L A + +C D +
Sbjct: 67 YEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 132 bits (334), Expect = 1e-36
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
+ + LN R +++L D IV F H+ +L ACS F ++FT L +
Sbjct: 13 ASDVLLNLNRLRSRDILTDVVIV-VSREQFRAHKTVLMACSGLFYSIFTDQLKRNLS-VI 70
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
P ++ L+++ Y +L++ E N+ +++ + M D C FIK
Sbjct: 71 NLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 132 bits (334), Expect = 1e-36
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
+ LN+ R+K++LCD T++ + F HR +L ACS+YF + +
Sbjct: 16 CTNILLGLNDQRKKDILCDVTLI-VERKEFRAHRAVLAACSEYFWQALVGQT--KNDLVV 72
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFI 188
V A L+++AY KL ++ +N+ ++ +F M +D C F+
Sbjct: 73 SLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 131 bits (331), Expect = 4e-36
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S + +LN+ R+K++LCD TI + F HR++L ACS YF + + ++
Sbjct: 13 STNVLLSLNDQRKKDVLCDVTIF-VEGQRFRAHRSVLAACSSYFHSRIVG--QADGELNI 69
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
V LI++AY KL ++++NV + +F + ++ C F+K
Sbjct: 70 TLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 130 bits (330), Expect = 7e-36
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
S + +LN+ R+K++LCD T++ + F HR++L ACS YF + + ++
Sbjct: 20 STNVLLSLNDQRKKDVLCDVTVL-VEGQRFRAHRSVLAACSSYFHSRIVG--QTDAELTV 76
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK-RLTTP 194
V LI++AY KL +++DNV + +F + ++ C F+K +
Sbjct: 77 TLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDS 136
Query: 195 RN 196
+
Sbjct: 137 TS 138
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 130 bits (329), Expect = 7e-36
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
++ LNE R + L CD ++V F HR +L A S YFR LF S +
Sbjct: 17 GNSILECLNEQRLQGLYCDVSVV-VKGHAFKAHRAVLAASSSYFRDLFNNSRSA----VV 71
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTT 193
V ++ + Y +L + + L+ F + + + +F ++++
Sbjct: 72 ELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 128 bits (325), Expect = 2e-35
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
+ N+ R LCD I+ D+ F HR +L S F LF + +
Sbjct: 12 PTGLLCKANQMRLAGTLCDVVIM-VDSQEFHAHRTVLACTSKMFEILFHR---NSQH--- 64
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRL 191
+ + ++EYAY L +++ LL A + + ++ C ++ +
Sbjct: 65 YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 128 bits (323), Expect = 6e-33
Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 16/225 (7%)
Query: 14 ESYAHRTTTDTDFSLKIRASTIGYLPI---SEDMASRLDLTEDDMTHIENAIKNKKNFSS 70
E+ A + F + G+ + L DD + + ++ +
Sbjct: 88 ETKAMESQRAYRFV---QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVN 144
Query: 71 IDRAMSVQA--------MQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRAL 122
I ++ L E + D + F H+ IL A S F A+
Sbjct: 145 ISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLC-VAGQEFQAHKAILAARSPVFSAM 203
Query: 123 FTTSLHDQEKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQD 182
F + + +K + VEI V+ V ++ + Y K + LL A D + + + +
Sbjct: 204 FEHEMEESKK-NRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKV 262
Query: 183 LCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDV 227
+C D + + N IL+ + H +L+ +I + DV
Sbjct: 263 MCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDV 307
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 120 bits (304), Expect = 4e-32
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Query: 80 MQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIP 139
L E + D + F H+ IL A S F A+F + + +K + VEI
Sbjct: 13 ADELGGLWENSRFTDCCLC-VAGQEFQAHKAILAARSPVFSAMFEHEMEESKK-NRVEIN 70
Query: 140 GVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFG 199
V+ V ++ + Y K + LL A D + + + + +C D + + N
Sbjct: 71 DVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 130
Query: 200 ILLFSRDHFCKKL 212
IL+ + H +L
Sbjct: 131 ILILADLHSADQL 143
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 112 bits (283), Expect = 1e-29
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 84 NEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIPGVDA 143
R + LCD I + FP H +L S G+
Sbjct: 22 LAARLRPALCDTLIT-VGSQEFPAHSLVLAGVSQQLGRRGQW----------ALGEGISP 70
Query: 144 SVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
S L+ + Y + + + L A + ++ C
Sbjct: 71 STFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARG 116
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 108 bits (272), Expect = 3e-28
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 64 NKKNFSSIDRAMSVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALF 123
++K S+ D S + +LNE R L CD T++ ++ F H+NIL A S YF LF
Sbjct: 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVI-VEDRKFRAHKNILSASSTYFHQLF 61
Query: 124 TTSLHDQEKFSLVEIPGVDASVMTSLIEYAYLRKL-HITEDNVASLLLATDFFCMSKAQD 182
+ + +VE+ + A + ++ Y Y K+ + D + L+ + +
Sbjct: 62 SVAG------QVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
Query: 183 L 183
L
Sbjct: 116 L 116
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 107 bits (269), Expect = 7e-28
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 87 REKNLLCDATIV---LADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIPGVDA 143
L+ D V P H+ +L S F A+F L E S + IP V+
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDL--AEVKSEIHIPDVEP 60
Query: 144 SVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 190
+ L++Y Y ++ + D V + L A + + C +F++
Sbjct: 61 AAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLET 107
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 106 bits (267), Expect = 1e-27
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 193 TPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELN 252
NC ++ + H +L + + + +EE + + + L +IIS
Sbjct: 9 QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQ-NTEEFLHLPHRLLTDIISDG--- 64
Query: 253 VKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRL 287
V + E I WI+++ E R+ SL +++
Sbjct: 65 VPCSQNPTEAIEAWINFNKEEREAFAESLRTSLKE 99
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 114 bits (285), Expect = 2e-26
Identities = 48/371 (12%), Positives = 105/371 (28%), Gaps = 41/371 (11%)
Query: 258 TVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIE 317
+++ + D + + + L + ++ T
Sbjct: 308 DMFQ-LWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSI 366
Query: 318 TFKFLYDLELIAQIDGEVPTPEI-ARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWV 376
+ L E ++ E P V +F +GG + + ++ D+
Sbjct: 367 SEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQ-LSIHYDKID 425
Query: 377 KIEQVDPMG----PRAYHGTAVIGYN--IYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAP 429
R H I N + +IGG + F+ T+ W I
Sbjct: 426 MKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS 485
Query: 430 MNFKRCY-VSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-------R 481
++ R + ++ + +GG ++ YN TE + + P +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSA 542
Query: 482 SDASATTLQGKIYITGGFNGHNCLN-SCEVYDPECNQWT--------LIEPMRHRRSGVS 532
+ I + GGF ++ ++ + T L P+ R
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602
Query: 533 CIAYHECIYVIGGFNGMSRMCNG---EKYNPVTKTWSQVPDMYNPRSNF--------AIE 581
+ ++GG + +P+++T + +P + +
Sbjct: 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662
Query: 582 VIDDMIFAIGG 592
I IGG
Sbjct: 663 TSMGTIHIIGG 673
Score = 101 bits (252), Expect = 2e-22
Identities = 42/287 (14%), Positives = 93/287 (32%), Gaps = 31/287 (10%)
Query: 355 GWSGGSPTDFVETYD-------TRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDG 407
G++ + D + ++ + ++++ +H N G
Sbjct: 300 GFAYVNVGDMFQLWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQG 359
Query: 408 NEYYNSCRCFNAVTKVWKEIAPMNF--KRCYVSTAVHHDVIYAMGGYNGQRRQNSVEKYN 465
+ S N ++ R + V + ++ MGG N R N + + +
Sbjct: 360 FLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRV-NEILQLS 418
Query: 466 YTENQWSLI------APMNVERSDASATTL--QGKIYITGGFNGH-NCLNSCEVYDPECN 516
++ + + + V R + TT+ ++ + GG L+ ++D +
Sbjct: 419 IHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478
Query: 517 QWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM---- 571
+W++I+ + H R S + + + ++GG M YN + + V
Sbjct: 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAM---LLYNVTEEIFKDVTPKDEFF 535
Query: 572 ---YNPRSNFAIEVIDDMIFAIGGFNGVTTIY-HVECYDEKTDEWYE 614
V I GGF TT+ + + E
Sbjct: 536 QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATE 582
Score = 49.7 bits (118), Expect = 3e-06
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 502 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 561
+ S + + L R ++ +GG N R+ + +
Sbjct: 362 FDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNP-YRVNEILQLSIH 420
Query: 562 TKTWSQV------PDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYH-VECYDEKTDEW 612
++ R I ++ + IGG +D KT EW
Sbjct: 421 YDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW 480
Query: 613 YEATDMNIYRSALSACVI 630
++ R SAC +
Sbjct: 481 SMIKSLSHTRFRHSACSL 498
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 106 bits (266), Expect = 4e-24
Identities = 43/311 (13%), Positives = 83/311 (26%), Gaps = 38/311 (12%)
Query: 356 WSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR 415
++D G ++ G V+ G +
Sbjct: 212 GGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTS 268
Query: 416 CFNAVTKVWKEIAPMNFKRCYVSTAVHHD--VIYAMGGYNGQRRQNSVEKYNYTENQWSL 473
+++ + W M R Y S+A D V G ++G + + E Y+ + W+
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328
Query: 474 IAPMNVERSDASATTLQ----GKIYITGGFNGH-----NCLNSCEVYDPECNQWTLIEPM 524
+ V + ++ G G Y
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
Query: 525 RHRRSGVSCI---------AYHECIYVIGGFNGM-----SRMCN---GEKYNPVTKTWSQ 567
+ R A I GG + + + T
Sbjct: 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 448
Query: 568 VPDMYNPRSNF-AIEVIDDMIFAIGG------FNGVTTIYHVECYDEKTDEWYEATDMNI 620
+Y R+ ++ + D F GG F T ++ E Y + D +Y+ +I
Sbjct: 449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508
Query: 621 YRSALSACVIM 631
R S +++
Sbjct: 509 VRVYHSISLLL 519
Score = 78.5 bits (192), Expect = 3e-15
Identities = 57/376 (15%), Positives = 104/376 (27%), Gaps = 43/376 (11%)
Query: 347 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYN--IYVIGG 404
HE+ + G + GSP V + AD K + R A+ N +
Sbjct: 102 HEVYLSSDGTNWGSP---VASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIA 158
Query: 405 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQNS---- 460
+S W + + + Y S
Sbjct: 159 EINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGI 218
Query: 461 --VEKYNYTENQWSLIAPMNVERSDASATTLQ---GKIYITGGFNGHNCLNSCEVYDPEC 515
++ + S + G+I +TGG + +YD
Sbjct: 219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSS 274
Query: 516 NQWTLIEPMRHRRSGVSCIAYHE-CIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDMYN 573
+ W M+ R S + ++ IGG ++G NGE Y+P +KTW+ +P+
Sbjct: 275 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334
Query: 574 PRSNFAIE----VIDDMIFAIGGFNGVTTIY-----HVECYDEKTDEWYEATDMNIYRSA 624
A + D+ + G G Y + + A R
Sbjct: 335 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394
Query: 625 LSACVIMGLPNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVL--PSSN 682
+ + K+L G S+ ++ L P ++
Sbjct: 395 APDAMCGNAVMYDAV------------KGKILTFGGSPDYQDSDATTNAHIITLGEPGTS 442
Query: 683 SNVSSSDGVMNNASSM 698
N + + A +
Sbjct: 443 PNTVFASNGLYFARTF 458
Score = 41.9 bits (97), Expect = 8e-04
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 350 LFAIGGWSGG------SPTDFVETYDTRADRWVKIEQVDPMG-PRAYHGTAVI---GYNI 399
F GG G +P E Y D + + +P R YH +++ G
Sbjct: 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF---YKQNPNSIVRVYHSISLLLPDGRVF 525
Query: 400 YVIGGFDGNEYYNSCR 415
GG G+ N
Sbjct: 526 NGGGGLCGDCTTNHFD 541
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-08
Identities = 72/532 (13%), Positives = 148/532 (27%), Gaps = 186/532 (34%)
Query: 7 VPIVFAPESYAHRTTTDTDFSLKIRASTIGYLPISEDMASRLDLTEDDMTHIENAIKNKK 66
VP S+ + F+ + T G+ ++ + +L + ++ + +
Sbjct: 22 VP----TASFFIASQLQEQFNKILPEPTEGFAA-DDEPTTPAELVGKFLGYVSSLV-EPS 75
Query: 67 NFSSIDRAMSVQAMQALNEFREKNLLCDATI------VLADNSHFPIHRNILCACSDYFR 120
D+ +++ L EF E L I +L +N + L Y
Sbjct: 76 KVGQFDQVLNL----CLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--YIT 128
Query: 121 ALFTT--SLHDQEKFSLVE-IPGVDASVMT-----SLIEYAY---LRKLHIT-----ED- 163
A + +L + +A ++ + Y LR L+ T D
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD-DYFEELRDLYQTYHVLVGDL 187
Query: 164 -NVASLLLATDFFCMSKAQDLC---CDFIKRLTTPRN-------------CFGILLFSRD 206
++ L+ A+ + + ++ L P N C I +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 207 HF---CKKL------------------------------EEWTRKYILRNFVDVARESEE 233
H+ K L + W +F R++
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW------ESFFVSVRKAIT 301
Query: 234 IVF--------------ISEQELEEIISSDE------LNVK--SEETVWELIIRWIDYDP 271
++F + LE+ + ++E L++ ++E V + + + + P
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 272 ENRKKHIVSLMKNIR-----------LGLLETEF---------------FRE-KVK---- 300
++ I SL N L L F E K+K
Sbjct: 362 AGKQVEI-SL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 301 --------HHPYVQSTPECRPIIIETFKFLY---DLEL----------IAQIDGEVP--- 336
H + + + + D+++ + + G +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 337 TPEIARPRV----------PHEILFAIGGWSGGSPTDFVETYDTRADRWVKI 378
I R V H + F GG SG T+ + V++
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL----THRNKDGTGVRV 527
Score = 53.9 bits (129), Expect = 2e-07
Identities = 70/501 (13%), Positives = 123/501 (24%), Gaps = 199/501 (39%)
Query: 155 LRKLHITEDNV-ASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLE 213
R L ++ ++ LL+ T F A L ++ F K L
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASF--FIASQL---------------------QEQFNKILP 42
Query: 214 EWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDY---- 269
E T E + DE T EL+ +++ Y
Sbjct: 43 EPT--------------------------EGFAADDE-----PTTPAELVGKFLGYVSSL 71
Query: 270 DPENRKKHIVSLMKNIRLGLLETEFFREK-VKHHPYVQSTPECRPIIIETFKFL---YDL 325
++ ++ L E + + H + + K L Y
Sbjct: 72 VEPSKVGQFDQVLNLC-LTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNY-- 126
Query: 326 ELIAQIDGEVPTPEIARP------RVPHEILFAI-GGWSGGSPTDFV----ETYDT---- 370
+ A+I + P + + + L AI GG G+ D+ + Y T
Sbjct: 127 -ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVL 183
Query: 371 --------------------RADR----------WVKIEQVDPMGPRAYHGTAVIGYNIY 400
A++ W +E + Y + I +
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSNTPDKDYLLSIPISCPL- 240
Query: 401 VIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-HDVIYAMGGYNGQRRQN 459
IG Y + + P + H ++ A
Sbjct: 241 -IGVIQLAHYVVTAKLLG--------FTPGELRSYLKGATGHSQGLVTA----------- 280
Query: 460 SVEKYNYTENQWSLIAPMNVERS--DASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ 517
IA + S + + +I G + E Y P +
Sbjct: 281 ------------VAIAETDSWESFFVSVRKAITVLFFI--GVRCY------EAY-PNTS- 318
Query: 518 WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRM--CNG------EKYNPVTKTWSQVP 569
+ P S + S M + + Y V KT S +P
Sbjct: 319 ---LPPSILEDS------------LENNEGVPSPMLSISNLTQEQVQDY--VNKTNSHLP 361
Query: 570 D-------MYNPRSNFAIEVI 583
+ N N V+
Sbjct: 362 AGKQVEISLVNGAKNL---VV 379
Score = 38.1 bits (88), Expect = 0.012
Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 81/277 (29%)
Query: 81 QALNEFREKNLLCDATIVLADN-----SHFP------IHRN---ILCA-CSD---YFRAL 122
+A N F++ IV+ +N HF I N ++ D +
Sbjct: 1648 RADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 123 F------TTSL---HDQEKFSLVEI--PGVDASVMTSLIEYAYLRKLHITEDN--VA--S 167
F +TS ++ S + P A + + L+ + + A S
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQP---ALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 168 L-----LLAT-DFFCMSKAQDL-------CCDFIKRLTTPRNCFGILLFSRDHFCKKLEE 214
L L + D + ++ + R R+ +G++ + +
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 215 WTRKYILRNFVD-VARESEEIVFI------SEQELEEIISSDELNVKSEETVWELIIRWI 267
L+ V+ V + + +V I ++Q +++ +L ++ +TV ++
Sbjct: 1824 EA----LQYVVERVGKRTGWLVEIVNYNVENQQ----YVAAGDL--RALDTVTNVL---- 1869
Query: 268 DYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPY 304
N K ++ I + L+ E+V+ H +
Sbjct: 1870 -----NFIK-----LQKIDIIELQKSLSLEEVEGHLF 1896
Score = 29.2 bits (65), Expect = 6.7
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 23/68 (33%)
Query: 587 IFAI-GGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRD 645
+ AI GG G T Y ++E + Y+ Y V D I +
Sbjct: 156 LVAIFGGQ-GNTDDY----FEE-LRDLYQ-----TYH-----------VLVGDLIKFSAE 193
Query: 646 SLMEEKRQ 653
+L E R
Sbjct: 194 TLSELIRT 201
Score = 28.9 bits (64), Expect = 7.3
Identities = 56/332 (16%), Positives = 93/332 (28%), Gaps = 126/332 (37%)
Query: 173 DFFCMSK-AQDLCCDFIKRLTTPRNCFGILLFSRD-------HFC----KKLEEWTRKYI 220
D + SK AQD+ + F IL + HF K++ E I
Sbjct: 1634 DLYKTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 221 LRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVS 280
VD ++E+I E+N S + +
Sbjct: 1693 FETIVDGKLKTEKIF-------------KEINEHSTSYTFR--------SEK-------- 1723
Query: 281 LMKNIRLGLL-ETEF------------FREKVKHHPYVQSTPECRPIIIETFKF----L- 322
GLL T+F F + +K + +I F L
Sbjct: 1724 -------GLLSATQFTQPALTLMEKAAFED-LKS----------KGLIPADATFAGHSLG 1765
Query: 323 -Y-------------D-LELIAQ----IDGEVPTPEIARPRVPHEILFAIGGWSGGSPTD 363
Y +E++ + VP E+ R + AI P
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY---GMIAIN------PGR 1816
Query: 364 FVETYDTRADRWVKIEQVDPMGPRAYHGTAV--IGYNI----YVIGGFDGNEYYNSCRCF 417
++ A ++V +E+V G V + YN+ YV G R
Sbjct: 1817 VAASFSQEALQYV-VERVG-----KRTGWLVEIVNYNVENQQYVAAG--------DLRAL 1862
Query: 418 NAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAM 449
+ VT V I + ++ + +
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 3e-07
Identities = 55/363 (15%), Positives = 105/363 (28%), Gaps = 112/363 (30%)
Query: 6 WVPIVFAPESYAHRTTTDTDFSLKIRASTIGYLPISEDMASRLDLTEDDMTHIENAIKNK 65
W+ + + + +T L++ I + SR D + + I +
Sbjct: 186 WL-------NLKNCNSPETV--LEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 66 KNFSSIDRAMSVQAMQALNEFREKNLLCDATIVLAD--NS----HFPIHRNILCACSDYF 119
+ + K + +VL + N+ F N+ C
Sbjct: 235 RRL-----------------LKSKP-YENCLLVLLNVQNAKAWNAF----NLSC------ 266
Query: 120 RALFTTSLHDQEKFSLVEIPGVDASVMTSLIEYAYLR------KLHITEDNVASLLLATD 173
+ L TT V L + +T D V SLLL
Sbjct: 267 KILLTTR---------------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-- 309
Query: 174 FFCMSKAQDL---CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARE 230
+ + QDL T PR I RD + W K++ + + E
Sbjct: 310 -YLDCRPQDLPREVLT-----TNPRRLSIIAESIRDGLA-TWDNW--KHVNCDKLTTIIE 360
Query: 231 SEEIVFISEQELEEIISS-DEL-----NVKSEETVWELIIRWID---YDPENRKKHIVSL 281
S ++ E E D L + + L + W D D +V+
Sbjct: 361 S----SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMV----VVNK 410
Query: 282 MKNIRLGLLETEFFREKVK-HHPYVQSTPECRP------IIIETFKFL--YDLE--LIAQ 330
+ + L+E + + Y++ + I++ + +D + +
Sbjct: 411 L--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 331 IDG 333
+D
Sbjct: 469 LDQ 471
Score = 37.5 bits (86), Expect = 0.017
Identities = 77/468 (16%), Positives = 133/468 (28%), Gaps = 138/468 (29%)
Query: 32 ASTIGYLPISEDMASRLDLTEDDMTHIENAIKNKKNFSSIDRAMSVQAMQALNEFR-EKN 90
S I M +R+ + + D + +N + K N S + + ++ QAL E R KN
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKN 152
Query: 91 LL----------CDATIVLADNS-----HFPIH-RNILCACSDYFRALFTTSLHDQEKFS 134
+L A V F I N+ S L Q +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 135 LVEIPGVDASVMTSLIE-YAYLRKLHITEDNVASLL-LATDFFCMSKAQDLCCDFIKRLT 192
+++ + A LR+L ++ LL L ++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--L--------NVQ-------- 254
Query: 193 TPR--NCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDE 250
+ N F + CK L TR + +F+ A + + L
Sbjct: 255 NAKAWNAF-------NLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTP------ 300
Query: 251 LNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQST-- 308
+E L+++++D P++ RE + +P S
Sbjct: 301 -----DEVK-SLLLKYLDCRPQDLP--------------------REVLTTNPRRLSIIA 334
Query: 309 PECR--PIIIETFK--FLYDLELIAQIDGEVPTPEIARPR------------VPHEILFA 352
R + +K L I + V P R +P +L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 353 IGGWSGGSPTD---FVETYDTR--ADRWVK-----------IEQVDPMGPRAYHGTAVIG 396
I W +D V ++ K +V A H + V
Sbjct: 395 I--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-- 450
Query: 397 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYV-STAVHH 443
++YN + F++ I P + Y S HH
Sbjct: 451 ------------DHYNIPKTFDS----DDLIPPYLDQ--YFYSHIGHH 480
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.011
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 205 RDHFCKKLEEWTRKY---ILRNFVDVARESEEIVFISEQELEEII 246
R+ K LEEW ++ + +N ++ R +++ F + + +II
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKNKIN-NRIADK-AFYQQPD-ADII 154
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 32.5 bits (73), Expect = 0.24
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP+++ V I A WS SP F AD + + + D +G
Sbjct: 22 TPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGIL 81
Query: 394 VI----GYNIYVIGGFDGNEYYN 412
G I FD E +
Sbjct: 82 AHAFQPGQGIGGDAHFDAEETWT 104
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 32.1 bits (72), Expect = 0.30
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP++ V A WS +P +F +D AD + E D G
Sbjct: 23 TPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLL 82
Query: 394 VIGY----NIYVIGGFDGNEYYNSCRCFNAVTKV 423
+ N FD +E + S + V
Sbjct: 83 AHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLV 116
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 32.0 bits (72), Expect = 0.32
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP++ R V H I A WS +P F + + +AD +V+ + D G
Sbjct: 21 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 80
Query: 394 VIGYN----IYVIGGFDGNEYYNS 413
+ I FD +E + +
Sbjct: 81 AHAFQPGPGIGGDAHFDEDERWTN 104
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.4 bits (73), Expect = 0.38
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 210 KKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDY 269
++ +K+++ +A E E + I E + S + + + V EL + +
Sbjct: 154 SDTKQKGKKFLV-----IAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFW 208
Query: 270 DPENRKKHIVSLM 282
D + K + V
Sbjct: 209 DAIS-KLYYVQFF 220
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 31.8 bits (73), Expect = 0.56
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 236 FISEQELEEIISSDELNVKSEETVWELIIRWIDYD 270
IS +EL+ I D++ + + +++ +D +
Sbjct: 145 KISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLN 179
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A*
1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Length = 174
Score = 30.9 bits (69), Expect = 0.74
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHG----T 392
T ++ V + A+ W P F + AD + + + G
Sbjct: 24 TRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTL 83
Query: 393 AVIGYNIYVIGG---FDGNEYYNS 413
A +GG FD +E +
Sbjct: 84 AHAFAPGTGLGGDAHFDEDERWTD 107
>2of5_H Leucine-rich repeat and death domain-containing protein; death
domain complex, apoptosis; 3.20A {Homo sapiens}
Length = 118
Score = 30.2 bits (68), Expect = 0.76
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 42 EDMASRLDLTEDDMTHIENAIKNKKNFSSIDRAMSVQAMQALNEFREKNLLCDATI 97
+A L ++ ++ I + + + + Q L + E+ +
Sbjct: 28 PAVALHLGVSYREVQRIRH--EFRDDLDE-------QIRHMLFSWAERQAGQPGAV 74
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 30.5 bits (68), Expect = 0.90
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP++ R V + I A WS +P F + AD + + D G
Sbjct: 18 TPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGIL 77
Query: 394 VIGYN----IYVIGGFDGNEYYN 412
+ I FD +E++
Sbjct: 78 AHAFGPGSGIGGDAHFDEDEFWT 100
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 30.9 bits (69), Expect = 0.92
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP++ V A WS +P F +D AD + + E D G
Sbjct: 23 TPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 82
Query: 394 VI----GYNIYVIGGFDGNEYYNSCR 415
G + FD +E + +
Sbjct: 83 AHAFAPGTGVGGDSHFDDDELWTLGK 108
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 30.9 bits (71), Expect = 1.0
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 373
YDL L + V P IA SGG F+E + A+
Sbjct: 183 YDLRLTRMVAEAVGVPVIA---------------SGGAGRMEHFLEAFQAGAE 220
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 30.9 bits (71), Expect = 1.1
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 17/53 (32%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 373
YD+ELI ++ V P IA SGG F E AD
Sbjct: 185 YDVELIRRVADSVRIPVIA---------------SGGAGRVEHFYEAAAAGAD 222
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 31.1 bits (69), Expect = 1.2
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP++ R V + I A WS +P F + AD + + D G
Sbjct: 17 TPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGIL 76
Query: 394 VIGY-NIYVIGG---FDGNEYYNS 413
+ IGG FD +E++ +
Sbjct: 77 AHAFGPGSGIGGDAHFDEDEFWTT 100
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 30.2 bits (67), Expect = 1.2
Identities = 13/83 (15%), Positives = 28/83 (33%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
++ R +V + A+ WS +P F E ++ RAD + + + G I
Sbjct: 22 PWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGIL 81
Query: 397 YNIYVIGGFDGNEYYNSCRCFNA 419
+ + + +
Sbjct: 82 AHAFFPKTHREGDVHFDYDETWT 104
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 31.0 bits (69), Expect = 1.3
Identities = 18/145 (12%), Positives = 35/145 (24%), Gaps = 9/145 (6%)
Query: 336 PTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGT 392
+ ++ R + A WS +P F Y AD ++ E D G
Sbjct: 109 YSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGL 168
Query: 393 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC----YVSTAVHHDVIYA 448
+ D + + V + C +
Sbjct: 169 LAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGRSYSACTTD 228
Query: 449 MGGYNGQRRQNSVEKYNYTENQWSL 473
G + S T++++
Sbjct: 229 --GRSDGLPWCSTTANYDTDDRFGF 251
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 31.3 bits (71), Expect = 1.4
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETY-DTRAD 373
YDLELI + V P IA G G P F E + TRAD
Sbjct: 483 YDLELIEHVKDAVKIPVIAS-----------SG--AGVPEHFEEAFLKTRAD 521
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 30.6 bits (70), Expect = 1.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 373
YD E+I + P IA SGG F+E + AD
Sbjct: 187 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 224
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 30.6 bits (70), Expect = 1.5
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 373
YD E+I + P IA SGG F+E + AD
Sbjct: 161 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 198
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 30.7 bits (70), Expect = 1.5
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 397 YNIYVIGGF---DGNEYYNSCRCFNA 419
+Y++ G DG+ YNS
Sbjct: 79 TGVYIVAGTAEKDGDVLYNSAVVVGP 104
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 30.5 bits (70), Expect = 1.6
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 373
YD E+I + P IA SGG F+E + AD
Sbjct: 182 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 219
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 29.8 bits (66), Expect = 1.7
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP ++ V + A+ WS P FV AD + + D GT
Sbjct: 18 TPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTL 77
Query: 394 VI----GYNIYVIGGFDGNEYYNSCR 415
G + FD E +
Sbjct: 78 AHAFAPGEGLGGDTHFDNAEKWTMGT 103
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV
collagenase) (92 kDa gelatinase)...; S1-prime pocket,
hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A
{Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A*
2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 29.8 bits (66), Expect = 1.9
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
+ ++ R + A WS +P F Y AD ++ E D G
Sbjct: 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLL 79
Query: 394 VIGYNIYVIGGFD 406
+ D
Sbjct: 80 AHAFPPGPGIQGD 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 30.8 bits (70), Expect = 2.1
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 309 PECRPIIIETFKFLYDLE-LIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFV 365
P+ ++E K L DLE L+++I + I++ +S DF+
Sbjct: 464 PDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFL 521
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 30.3 bits (67), Expect = 2.7
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVD--PMGPRAYHG 391
TP++ V A WS +P F +D AD + + E D P +
Sbjct: 103 TPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 162
Query: 392 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 431
V G ++ V +V A
Sbjct: 163 AHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 202
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 29.4 bits (67), Expect = 3.3
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 323 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 373
YD E+I + P IA SGG F+E + AD
Sbjct: 187 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLRGAD 224
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU
NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A*
3u75_A* 3u14_A*
Length = 509
Score = 29.4 bits (66), Expect = 4.6
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 363 DFVE--TYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 410
+E ++ +WV ++P P N Y +G FDG ++
Sbjct: 207 GLIEVPIENSDKSKWVMFLAINPGSPLGGS------INQYFVGDFDGFQF 250
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 29.3 bits (66), Expect = 5.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 349 ILFAIGGWSGGSPTDFVETYDTRA 372
+L ++GGW + T ++RA
Sbjct: 110 VLLSVGGWGARGFSGAAATAESRA 133
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 29.1 bits (64), Expect = 5.7
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIEQVDPMGPRAYHGTA 393
TP++ R V H I A WS +P F + + +AD +V+ + D G
Sbjct: 103 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 162
Query: 394 VIGYNIYVIGG----FDGNEYYNSC-RCFNAVTKVWKEI 427
+ G FD +E + + R +N E+
Sbjct: 163 AHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHEL 201
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor,
transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A
3oq9_H
Length = 122
Score = 27.2 bits (60), Expect = 9.7
Identities = 6/49 (12%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 42 EDMASRLDLTEDDMTHIENAIKNKKNFSSIDRAMSVQAMQALNEFREKN 90
+A +L +++ + IE+ + +N + + ++L ++
Sbjct: 21 RRLARQLKVSDTKIDSIED--RYPRNLTE-------RVRESLRIWKNTE 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.417
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,383,406
Number of extensions: 703695
Number of successful extensions: 1927
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 110
Length of query: 712
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 612
Effective length of database: 3,909,693
Effective search space: 2392732116
Effective search space used: 2392732116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)