RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14726
(712 letters)
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 151 bits (381), Expect = 9e-42
Identities = 101/292 (34%), Positives = 149/292 (51%), Gaps = 10/292 (3%)
Query: 343 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPM-GPRAYHGTAVIGYNIYV 401
P+V +++ GG+ S ++E Y+ W ++ + PR+ V+G +Y
Sbjct: 1 PKVG-RLIYTAGGYFRQS-LSYLEAYNPSNGTW---LRLADLQVPRSGLAGCVVGGLLYA 55
Query: 402 IGGFD----GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRR 457
+GG + GN ++ C+N +T W APM+ R + V IYA+GG +G
Sbjct: 56 VGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH 115
Query: 458 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ 517
NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y PE N+
Sbjct: 116 HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 175
Query: 518 WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN 577
W +I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M + RS
Sbjct: 176 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 235
Query: 578 FAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 629
I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 236 LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 88.0 bits (216), Expect = 9e-20
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 5/204 (2%)
Query: 444 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN--- 500
+IY GGY Q + +E YN + W +A + V RS + + G +Y GG N
Sbjct: 5 RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 501 -GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 559
G+ ++ + Y+P NQW+ PM R+ + IY +GG +G + E+Y
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 123
Query: 560 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 619
P W V M R + V++ +++A+GGF+G + ECY + +EW T MN
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN 183
Query: 620 IYRSALSACVIMGLPNVYDYIHQH 643
RS CV+
Sbjct: 184 TIRSGAGVCVLHNCIYAAGGYDGQ 207
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 102 bits (253), Expect = 7e-24
Identities = 49/351 (13%), Positives = 91/351 (25%), Gaps = 54/351 (15%)
Query: 337 TPEIARPRVPHEI--------LFAIGGWS------GGSPTDFVETYDTRADRWVKIEQVD 382
P I P VP + + ++D
Sbjct: 12 GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 383 PMGPRAYHGTAVIGY-NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 441
G ++ G I V GG D + +++ + W M R Y S+A
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 442 HH--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG----KIYI 495
V G ++G + + E Y+ + W+ + V + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 496 TGGFNGH-----NCLNSCEVYDPECNQWTLIEPMRHRRS-----------------GVSC 533
G G Y + R G
Sbjct: 188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL 247
Query: 534 IAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN-FAIEVIDDMIFAIGG 592
Y + + + T +Y R+ ++ + D F GG
Sbjct: 248 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 307
Query: 593 ------FNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVY 637
F T ++ E Y + D +Y+ +I R S +++ V+
Sbjct: 308 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVF 358
Score = 81.8 bits (200), Expect = 4e-17
Identities = 27/236 (11%), Positives = 57/236 (24%), Gaps = 34/236 (14%)
Query: 419 AVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRRQN------SVEKYNYTENQWS 472
W + + + Y ++ + S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 473 LIAPMNVERSD---ASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLI--EPMRHR 527
+ + G+I +TGG + +YD + W +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 528 RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN---------- 577
+ ++ + G ++G NGE Y+P +KTW+ +P+
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181
Query: 578 ----FAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 629
+ +F G Y + + A R +
Sbjct: 182 DNHAWLFGWKKGSVFQAGPSTA-----MNWYYTSGSGDVKSAGKRQSNRGVAPDAM 232
Score = 78.3 bits (191), Expect = 6e-16
Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 36/242 (14%)
Query: 355 GWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYY--- 411
WSGG E Y + W + + + +
Sbjct: 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198
Query: 412 ----NSCRCFNAVTKVWKEIAPMNFKRCYVS-----------------TAVHHDVIYAMG 450
+ + + K R Y
Sbjct: 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258
Query: 451 GYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGG------FNGHN 503
++ + + N + R+ ++ G +ITGG F
Sbjct: 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318
Query: 504 CLNSCEVYDPECNQWTLIEPMRHRRSG--VSCIAYHECIYVIGGF---NGMSRMCNGEKY 558
+ + E+Y PE + + P R +S + ++ GG + + + + +
Sbjct: 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 378
Query: 559 NP 560
P
Sbjct: 379 TP 380
Score = 77.5 bits (189), Expect = 9e-16
Identities = 19/188 (10%), Positives = 51/188 (27%), Gaps = 9/188 (4%)
Query: 469 NQWSLIAPMNVERSDASATTLQGKIYITGGF------NGHNCLNSCEVYDPECNQWTLIE 522
+W + + + A+ G++ + + + +DP +
Sbjct: 9 GRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT 68
Query: 523 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF--AI 580
+ + I G Y+ + +W PDM R A
Sbjct: 69 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT-SLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 581 EVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 640
+ G ++G + E Y + W + + + + + + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 641 HQHRDSLM 648
+ +
Sbjct: 188 FGWKKGSV 195
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 88.6 bits (219), Expect = 1e-21
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
+ + LN R +++L D IV F H+ +L ACS F ++FT L
Sbjct: 9 ASDVLLNLNRLRSRDILTDVVIV-VSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVI- 66
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 189
P ++ L+++ Y +L++ E N+ +++ + M D C FIK
Sbjct: 67 NLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 120
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 85.5 bits (211), Expect = 2e-20
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 76 SVQAMQALNEFREKNLLCDATIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSL 135
+ N+ R LCD I+ D+ F HR +L S F
Sbjct: 12 PTGLLCKANQMRLAGTLCDVVIM-VDSQEFHAHRTVLACTSKMFEI------LFHRNSQH 64
Query: 136 VEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRL 191
+ + ++EYAY L +++ LL A + + ++ C ++ +
Sbjct: 65 YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 29.9 bits (66), Expect = 0.60
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHG-TAVI 395
TP++ + V + A+ W +P F Y+ AD + + + G V+
Sbjct: 23 TPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVL 82
Query: 396 GYNIYVIGGFDGNEYYNSC 414
+ G +G+ +++
Sbjct: 83 AHAYAPGPGINGDAHFDDD 101
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 29.9 bits (66), Expect = 0.71
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTA-VI 395
TP++ R V H I A WS +P F + + +AD + + D + G +
Sbjct: 16 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 75
Query: 396 GYNIYVIGGFDGNEYYNSC 414
+ G G+ +++
Sbjct: 76 AHAFQPGPGIGGDAHFDED 94
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 29.8 bits (65), Expect = 1.0
Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 10/156 (6%)
Query: 491 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC--IYVIGGFNG 548
N +Y+ N+W + ++ V+ + + V G +
Sbjct: 19 RTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73
Query: 549 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 608
+ + T + V N + ++ FA+G + V +I + E ++
Sbjct: 74 NAYVWT---LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130
Query: 609 TDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHR 644
+ + +L L + R
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 29.0 bits (64), Expect = 1.0
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
TP+++ V I A WS SP F AD + Q D + G
Sbjct: 22 TPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPF-----DG 76
Query: 397 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQR 456
N + F + F+A A N A H+ +++G +
Sbjct: 77 PNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNL----FLVAA-HEFGHSLGLAHSSD 131
Query: 457 RQNSVEKYNYTENQWSLIAPM 477
++ NY + S +
Sbjct: 132 P-GALMYPNYAFRETSNYSLP 151
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 96
Score = 27.8 bits (62), Expect = 1.3
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 96 TIVLADNSHFPIHRNILCACSDYFRALFTTSLHDQEKFSLVEIPGVDASVMTSLIEYAYL 155
++ +D F + R L + + + V + + V++ + Y
Sbjct: 4 KLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY 63
Query: 156 RKLH------ITEDNVAS-----LLLATDF 174
+ + I E +A LL+A +F
Sbjct: 64 KVRYTNSSTEIPEFPIAPEIALELLMAANF 93
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
progastricsin (pepsinogen C) [TaxId: 9606]}
Length = 372
Score = 29.2 bits (64), Expect = 1.6
Identities = 16/196 (8%), Positives = 43/196 (21%), Gaps = 23/196 (11%)
Query: 435 CYVSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY 494
Y + + Y G G +++ + N ++ G
Sbjct: 106 TYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDG--I 163
Query: 495 ITGGFNGHNCLNSCEVYDPECNQWTLIEPM--------RHRRSGVSCIAYHECIYVIGG- 545
+ + + + + L P+ + G + G
Sbjct: 164 MGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQI 223
Query: 546 ------------FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGF 593
+ G+ ++ + D + + ++ A G
Sbjct: 224 YWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 283
Query: 594 NGVTTIYHVECYDEKT 609
+ V C +
Sbjct: 284 EDEYGQFLVNCNSIQN 299
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319)
{Vibrio cholerae [TaxId: 666]}
Length = 81
Score = 27.0 bits (60), Expect = 2.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 71 IDRAMSVQAMQALNEFREKNLLCDATIVLADNSHF 105
+ +A ++ M ++N F + A V+
Sbjct: 18 LAKAAALAGMSSINSFVLNAAIEKAKQVIEREQAL 52
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 26.5 bits (59), Expect = 2.3
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 204 SRDHFCKKL---EEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVW 260
+ D F K L E++ + F + EE+ ++ +EL EI D E TV
Sbjct: 4 AIDTFTKYLDIDEDFATVLVEEGFSTL----EELAYVPMKELLEIEGLD------EPTVE 53
Query: 261 ELIIRWIDY 269
L R +
Sbjct: 54 ALRERAKNA 62
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 26.0 bits (57), Expect = 4.3
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 226 DVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPE 272
+ +E + + Q + II N KS + +W
Sbjct: 10 NCQQELTDDLHKQYQIVGRII--AHSNQKSAAGYPDYYCKWQGLPYS 54
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 27.7 bits (60), Expect = 4.7
Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 7/151 (4%)
Query: 375 WVKIEQVDP-----MGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP 429
+ I Q+ + G ++ N ++ ++ + +A
Sbjct: 8 DISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVAD 67
Query: 430 MNFKRCY--VSTAVHHDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT 487
+ + H D I +G + Q+ + + + +D+
Sbjct: 68 SLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTV 127
Query: 488 TLQGKIYITGGFNGHNCLNSCEVYDPECNQW 518
+L G G + ++ V+ P N
Sbjct: 128 SLDGMPLQCYYLGGGHATDNIVVWLPTENIL 158
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 26.9 bits (58), Expect = 5.6
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 1/141 (0%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
TP++ P I A W +P F E + + + + + +HG +
Sbjct: 17 TPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPF 76
Query: 397 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQR 456
+ + + N + H++ +A+G +
Sbjct: 77 DGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEH-SN 135
Query: 457 RQNSVEKYNYTENQWSLIAPM 477
++ Y +
Sbjct: 136 DPTAIMAPFYQYMETDNFKLP 156
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 25.6 bits (56), Expect = 5.8
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 241 ELEEIISSDELNVKSEETVWELIIRWIDYDPE 272
E II S +++ + + +++W + +
Sbjct: 8 VPERIIDSQRASLEDGTSQLQYLVKWRRLNYD 39
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 26.8 bits (58), Expect = 6.0
Identities = 11/82 (13%), Positives = 25/82 (30%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
+ ++ R + A WS +P F Y AD ++ + + G +
Sbjct: 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLL 79
Query: 397 YNIYVIGGFDGNEYYNSCRCFN 418
+ + G + +
Sbjct: 80 AHAFPPGPGIQGDAHFDDDELW 101
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 26.7 bits (58), Expect = 6.3
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 337 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIG 396
TP++ V A WS +P +F +D AD + + + G + +
Sbjct: 23 TPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLL 82
Query: 397 YNIYVIGGF-DGNEYYNSCRCFNAVTKVW 424
+ + G G+ +++ + + +K +
Sbjct: 83 AHAFPPGPNYGGDAHFDDDETWTSSSKGY 111
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
strain Mahoney [TaxId: 12080]}
Length = 461
Score = 27.3 bits (60), Expect = 7.2
Identities = 41/265 (15%), Positives = 78/265 (29%), Gaps = 51/265 (19%)
Query: 68 FSSIDRAMSVQAMQALNEFREKNLLCD--ATIVLADNSHFPIHRNILCACSDYFRALFTT 125
++ D ++S +AL EK D I ++SH C T
Sbjct: 234 YTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGT 293
Query: 126 SLHDQEKFSLVEIPGVDASVMTSLIEYAYLRKLHITEDNVASLLLATDFFCMSKAQDLCC 185
S + S++ +LI L K + D ++ D+
Sbjct: 294 S--------------IFNSMINNLIIRTLLLKTYKGIDL-------DHLKMIAYGDDVIA 332
Query: 186 DFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYIL------RNFVDVARESEEIVFISE 239
+ + L + + Y L ++ E + F+
Sbjct: 333 SY----------------PHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKR 376
Query: 240 QELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKV 299
+ ++ IRW DP N + H+ SL + E + + +
Sbjct: 377 FFRADEKYPFLIHPVMPMKEIHESIRWTK-DPRNTQDHVRSLC--LLAWHNGEEEYNKFL 433
Query: 300 KHHPYVQSTPECRPIIIETFKFLYD 324
++S P R + + + LYD
Sbjct: 434 AK---IRSVPIGRALDLPEYSTLYD 455
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Length = 370
Score = 27.2 bits (59), Expect = 7.2
Identities = 39/332 (11%), Positives = 81/332 (24%), Gaps = 46/332 (13%)
Query: 282 MKNIRLGLLETEFFREKVKHHPYVQS----TPECRPIIIETFKFLYDLELIAQIDGEVPT 337
K++R L++ ++ +K H + + I E + D E I
Sbjct: 9 KKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTI------ 62
Query: 338 PEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIEQVDPMGPRAYHGTAVIGY 397
I P ++F G S +V + + Q +P + T+
Sbjct: 63 -GIGTPAQDFTVIFDTG-----SSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELS 116
Query: 398 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHHDVIYAMGGYNGQRR 457
Y G G Y++ + ++ A ++
Sbjct: 117 ITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASG 176
Query: 458 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ 517
V + + S S+ G + + GG
Sbjct: 177 ATPVFDNLWDQGLVSQDLFSVYLSSNDD----SGSVVLLGG------------------- 213
Query: 518 WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN 577
I+ + S E + I + + + + + D
Sbjct: 214 ---IDSSYYTGSLNWVPVSVEGYWQIT----LDSITMDGETIACSGGCQAIVDTGTSLLT 266
Query: 578 FAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT 609
I ++ IG + C +
Sbjct: 267 GPTSAIANIQSDIGASENSDGEMVISCSSIDS 298
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 374
Score = 27.2 bits (59), Expect = 7.9
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 349 ILFAIGGWSGGSPTDFVETYDTRADRWVK--IEQVDPMGPRAYHGTAVIGYNIYVIGGFD 406
++ ++GGW+ + + V I+ + G G + G D
Sbjct: 120 VMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGID 179
Query: 407 GNEYYNSCRCFNAVTKVWKEIAPMNFK 433
+ + A V NFK
Sbjct: 180 IDWEWPGTNSGLAGNGVDTVNDRANFK 206
>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI,
N-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 171
Score = 26.3 bits (58), Expect = 8.7
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 272 ENRKKHIVSLMKNIRLGLLETEFFREKVKH-HPYVQSTPECRPIIIETFK 320
+NR K + +L N++ L + + H Y+Q E + E K
Sbjct: 16 KNRSKFVSTLKDNVKFKLKKFPNIKIDATHDRMYIQLNGEDHEAVSERLK 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.417
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,826,641
Number of extensions: 139819
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 34
Length of query: 712
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 620
Effective length of database: 1,144,436
Effective search space: 709550320
Effective search space used: 709550320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)