BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14727
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/54 (88%), Positives = 50/54 (92%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
DD F+RRKQRRNRTTFTLQQLE LE FAQTHYPDVFTRE+LAMKINLTEARVQ
Sbjct: 25 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/54 (88%), Positives = 50/54 (92%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
DD F+RRKQRRNRTTFTLQQLE LE FAQTHYPDVFTRE+LAMKINLTEARVQ
Sbjct: 25 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 99.8 bits (247), Expect = 5e-21, Method: Composition-based stats.
Identities = 47/54 (87%), Positives = 49/54 (90%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
DD F+RRKQRRNRTTF LQQLE LE FAQTHYPDVFTRE+LAMKINLTEARVQ
Sbjct: 25 DDGFLRRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++ ++RKQRR RTTFT QLEELE AF +THYPDVFTRE+LAM+++LTEARVQ
Sbjct: 320 EEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 46/54 (85%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
D+ +RKQRR RTTFT QLEELE AF++THYPDVFTRE+LAMKI LTEAR+Q
Sbjct: 77 DEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++ ++RKQRR RTTFT QLEELE AF +THYPDVFTRE+LAM+++LTEARVQ
Sbjct: 324 EEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 47/59 (79%)
Query: 9 HPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
H + D +RKQRR RTTFT QLEELE AF +THYPDVFTRE+LAM+++LTEARVQ
Sbjct: 199 HGSNAGDRPTKRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQ 257
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 82.4 bits (202), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++ ++RKQRR RTTFT QLEELE AF +THYPDVFTRE+LAM+++LTEARVQ
Sbjct: 322 EEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++ ++RKQRR RTTFT QLEELE AF +THYPDVFTRE+LAM+++LTEARVQ
Sbjct: 207 EEGMLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 260
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 213 LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 262
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
D+ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL E RVQ
Sbjct: 114 DEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RKQRR RTTFT QL+ELE FA+THYPD++TRE+LA+KI+LTEARVQ
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 13 HDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
DD+ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL E RVQ
Sbjct: 519 QDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 573
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 78.6 bits (192), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 211 LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 260
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RKQRR RTTFT QL+ELE FA+THYPD++TRE+LA+KI+LTEARVQ
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q9XSK0|CRX_BOVIN Cone-rod homeobox protein OS=Bos taurus GN=CRX PE=2 SV=1
Length = 299
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 9 HPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
HPA+ S RKQRR RTTFT QLEELE FA+T YPDV+ RE++A+KINL E+RVQ
Sbjct: 27 HPAVSYPS-APRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQ 84
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RKQRR RTTFT QL+ELE FA+THYPD++TRE+LA+KI+LTEARVQ
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q8SQ03|CRX_CANFA Cone-rod homeobox protein OS=Canis familiaris GN=CRX PE=2 SV=1
Length = 299
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 7/67 (10%)
Query: 1 MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN 60
++H + SY A RKQRR RTTFT QLEELE FA+T YPDV+ RE++A+KIN
Sbjct: 25 LMHQAVSYPSA-------PRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKIN 77
Query: 61 LTEARVQ 67
L E+RVQ
Sbjct: 78 LPESRVQ 84
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
GN=SMOX-3 PE=2 SV=1
Length = 288
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RKQRR RTTFT QL+ELE AF +THYPD++TREDLA++I+LTEARVQ
Sbjct: 1 KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQ 49
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 10 PAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
PA ++ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL E RVQ
Sbjct: 24 PAAAEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 81
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 216 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 265
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 47/63 (74%)
Query: 5 SYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEA 64
S S P I D+ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL E
Sbjct: 118 SDSRSPDIPDEDQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEV 177
Query: 65 RVQ 67
RVQ
Sbjct: 178 RVQ 180
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLEELE AF +THYPD++TRE+LA + LTEARVQ
Sbjct: 192 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 241
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RKQRR RTTFT QL+ELE FA+THYPD++TRE+LA+KI+LTEARVQ
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RKQRR RTTFT QL+ELE FA+THYPD++TRE+LA+KI+LTEARVQ
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 10 PAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
P D+ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL E RVQ
Sbjct: 130 PEQGDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 187
>sp|O54751|CRX_MOUSE Cone-rod homeobox protein OS=Mus musculus GN=Crx PE=2 SV=1
Length = 299
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
RKQRR RTTFT QLEELE FA+T YPDV+ RE++A+KINL E+RVQ
Sbjct: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQ 84
>sp|O43186|CRX_HUMAN Cone-rod homeobox protein OS=Homo sapiens GN=CRX PE=1 SV=1
Length = 299
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
RKQRR RTTFT QLEELE FA+T YPDV+ RE++A+KINL E+RVQ
Sbjct: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQ 84
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
K+RRNRTTFT QLEELE F +THYPDV+ RE LAM+ +LTEARVQ
Sbjct: 201 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
K+RRNRTTFT QLEELE F +THYPDV+ RE LAM+ +LTEARVQ
Sbjct: 199 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 48/66 (72%)
Query: 2 LHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINL 61
L TS S + D+ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL
Sbjct: 110 LSTSNSDNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNL 169
Query: 62 TEARVQ 67
E RVQ
Sbjct: 170 PEVRVQ 175
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++K RRNRTTFT QL ELE AF ++HYPDV++RE+LA K+NL E RVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 182
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 48/66 (72%)
Query: 2 LHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINL 61
L TS S + D+ ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL
Sbjct: 110 LSTSNSDNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNL 169
Query: 62 TEARVQ 67
E RVQ
Sbjct: 170 PEVRVQ 175
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++K RRNRTTFT QL ELE AF ++HYPDV++RE+LA K+NL E RVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
K+RRNRTTFT QLEELE F +THYPDV+ RE LAM+ +LTEARVQ
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 5 SYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEA 64
S S P D ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMK+NL E
Sbjct: 120 SDSKSPDSADGEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEV 179
Query: 65 RVQ 67
RVQ
Sbjct: 180 RVQ 182
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 42/50 (84%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR+RTTFT +QLE LE AF++T YPDV+TRE+LA LTEAR+Q
Sbjct: 178 LKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQ 227
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ K+RRNRTTF+ QLEELE F +THYPDV+ RE LA++ +LTEARVQ
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|Q63410|OTX1_RAT Homeobox protein OTX1 OS=Rattus norvegicus GN=Otx1 PE=2 SV=1
Length = 355
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 7/67 (10%)
Query: 1 MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN 60
+LH S Y PA RKQRR RTTFT QL+ LE FA+T YPD+F RE++A+KIN
Sbjct: 24 LLHPSVGY-PA------TPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKIN 76
Query: 61 LTEARVQ 67
L E+RVQ
Sbjct: 77 LPESRVQ 83
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++K RRNRTTFT QL ELE AF ++HYPDV++RE+LA K+NL E RVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 12 IHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ DD ++K RRNRTTFT QL ELE AF ++HYPDV++RE+LA+K+NL E RVQ
Sbjct: 96 LSDDENPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQ 151
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 40/49 (81%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ K+RRNRTTF+ QLEELE F +THYPDV+ RE LA++ +LTEARVQ
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|P32242|OTX1_HUMAN Homeobox protein OTX1 OS=Homo sapiens GN=OTX1 PE=1 SV=1
Length = 354
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 7/67 (10%)
Query: 1 MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN 60
+LH S Y PA RKQRR RTTFT QL+ LE FA+T YPD+F RE++A+KIN
Sbjct: 24 LLHPSVGY-PA------TPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKIN 76
Query: 61 LTEARVQ 67
L E+RVQ
Sbjct: 77 LPESRVQ 83
>sp|P80205|OTX1_MOUSE Homeobox protein OTX1 OS=Mus musculus GN=Otx1 PE=2 SV=1
Length = 355
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 7/67 (10%)
Query: 1 MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN 60
+LH S Y PA RKQRR RTTFT QL+ LE FA+T YPD+F RE++A+KIN
Sbjct: 24 LLHPSVGY-PA------TPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKIN 76
Query: 61 LTEARVQ 67
L E+RVQ
Sbjct: 77 LPESRVQ 83
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 41/52 (78%)
Query: 16 SFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
S +K RRNRTTFT QL ELE AF ++HYPDV++RE+LAMKI+L E RVQ
Sbjct: 81 SNCNKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQ 132
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
++RKQRR RTTF+ QL+ELE AF +T YPD++TRE+LA + NLTEAR+Q
Sbjct: 209 LKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 258
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RK+RR+RT FT QLEELE AF++ HYPDV+ RE LAMK L E R+Q
Sbjct: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAMKTELPEDRIQ 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,809,330
Number of Sequences: 539616
Number of extensions: 602047
Number of successful extensions: 2453
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 674
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)