Query psy14727
Match_columns 67
No_of_seqs 143 out of 1073
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 19:07:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.6 5.1E-16 1.7E-20 78.3 6.2 53 15-67 10-62 (80)
2 1wh5_A ZF-HD homeobox family p 99.6 9.3E-16 3.2E-20 77.4 6.2 49 19-67 14-66 (80)
3 2kt0_A Nanog, homeobox protein 99.6 1.9E-15 6.6E-20 76.6 6.6 51 17-67 17-67 (84)
4 1wh7_A ZF-HD homeobox family p 99.6 2.1E-15 7.2E-20 76.1 5.7 49 18-67 13-66 (80)
5 2cra_A Homeobox protein HOX-B1 99.6 1.5E-15 5.2E-20 74.8 4.9 49 19-67 4-52 (70)
6 2da3_A Alpha-fetoprotein enhan 99.6 1.4E-15 4.8E-20 76.5 4.6 50 18-67 13-62 (80)
7 2djn_A Homeobox protein DLX-5; 99.6 2.1E-15 7.1E-20 74.3 4.7 49 19-67 4-52 (70)
8 1nk2_P Homeobox protein VND; h 99.6 3E-15 1E-19 74.9 5.3 50 18-67 5-54 (77)
9 2dmu_A Homeobox protein goosec 99.6 2.3E-15 7.9E-20 74.1 4.8 48 20-67 5-52 (70)
10 2da2_A Alpha-fetoprotein enhan 99.6 2.7E-15 9.2E-20 73.8 5.0 49 19-67 4-52 (70)
11 1puf_A HOX-1.7, homeobox prote 99.6 4.2E-15 1.4E-19 74.4 5.6 51 17-67 8-58 (77)
12 1wi3_A DNA-binding protein SAT 99.6 2.5E-15 8.6E-20 73.4 4.3 49 19-67 4-53 (71)
13 2h1k_A IPF-1, pancreatic and d 99.6 2.9E-15 9.9E-20 72.4 4.1 47 21-67 2-48 (63)
14 2da1_A Alpha-fetoprotein enhan 99.6 2.2E-15 7.5E-20 74.1 3.6 49 19-67 4-52 (70)
15 2vi6_A Homeobox protein nanog; 99.6 2.4E-15 8.3E-20 72.5 3.7 47 21-67 2-48 (62)
16 2dms_A Homeobox protein OTX2; 99.6 5.1E-15 1.7E-19 74.5 5.0 49 19-67 4-52 (80)
17 1bw5_A ISL-1HD, insulin gene e 99.6 4.4E-15 1.5E-19 72.3 4.4 47 21-67 2-48 (66)
18 2cue_A Paired box protein PAX6 99.6 5.7E-15 2E-19 74.4 4.9 48 20-67 5-52 (80)
19 2hdd_A Protein (engrailed home 99.6 3.4E-15 1.1E-19 71.8 3.8 46 22-67 3-48 (61)
20 1ig7_A Homeotic protein MSX-1; 99.6 5.6E-15 1.9E-19 70.3 4.4 45 23-67 1-45 (58)
21 2dmq_A LIM/homeobox protein LH 99.5 8.2E-15 2.8E-19 73.7 5.0 48 20-67 5-52 (80)
22 1akh_A Protein (mating-type pr 99.5 3.3E-15 1.1E-19 71.7 3.3 48 20-67 3-50 (61)
23 3a01_A Homeodomain-containing 99.5 1.1E-14 3.6E-19 75.3 5.4 49 19-67 14-62 (93)
24 2e1o_A Homeobox protein PRH; D 99.5 1E-14 3.5E-19 71.8 5.0 48 20-67 5-52 (70)
25 2m0c_A Homeobox protein arista 99.5 1E-14 3.5E-19 72.5 4.9 49 19-67 6-54 (75)
26 2l7z_A Homeobox protein HOX-A1 99.5 1.2E-14 4.1E-19 72.1 4.9 48 20-67 5-52 (73)
27 1zq3_P PRD-4, homeotic bicoid 99.5 9E-15 3.1E-19 71.7 4.3 46 22-67 2-47 (68)
28 1jgg_A Segmentation protein EV 99.5 8.6E-15 3E-19 70.1 4.1 45 23-67 2-46 (60)
29 1fjl_A Paired protein; DNA-bin 99.5 1E-14 3.4E-19 73.6 4.4 50 18-67 14-63 (81)
30 1b8i_A Ultrabithorax, protein 99.5 1.4E-14 4.7E-19 73.2 4.6 48 20-67 18-65 (81)
31 3rkq_A Homeobox protein NKX-2. 99.5 1.4E-14 4.8E-19 68.7 4.4 46 22-67 2-47 (58)
32 1ftt_A TTF-1 HD, thyroid trans 99.5 1.7E-14 5.9E-19 70.6 4.3 46 22-67 2-47 (68)
33 3nar_A ZHX1, zinc fingers and 99.5 1.5E-14 5.1E-19 75.1 4.1 49 19-67 22-70 (96)
34 1ahd_P Antennapedia protein mu 99.5 1E-14 3.5E-19 71.5 3.2 46 22-67 2-47 (68)
35 2r5y_A Homeotic protein sex co 99.5 1.7E-14 5.9E-19 73.7 4.1 49 19-67 25-73 (88)
36 2k40_A Homeobox expressed in E 99.5 2.2E-14 7.4E-19 70.1 4.2 45 23-67 2-46 (67)
37 1yz8_P Pituitary homeobox 2; D 99.5 5.5E-15 1.9E-19 72.4 2.0 47 21-67 2-48 (68)
38 2da4_A Hypothetical protein DK 99.5 1E-14 3.4E-19 73.4 2.6 49 19-67 5-57 (80)
39 1b72_A Protein (homeobox prote 99.5 3.2E-14 1.1E-18 73.9 3.9 48 20-67 32-79 (97)
40 2ecc_A Homeobox and leucine zi 99.5 6.4E-14 2.2E-18 70.0 4.3 43 25-67 6-48 (76)
41 1x2n_A Homeobox protein pknox1 99.4 1.4E-13 4.7E-18 68.2 4.8 49 19-67 4-55 (73)
42 2dn0_A Zinc fingers and homeob 99.4 9.5E-14 3.3E-18 69.3 4.2 46 22-67 8-53 (76)
43 2ly9_A Zinc fingers and homeob 99.4 1.1E-13 3.8E-18 68.6 4.4 46 22-67 6-51 (74)
44 3a02_A Homeobox protein arista 99.4 6.8E-14 2.3E-18 67.0 3.5 43 25-67 2-44 (60)
45 2hi3_A Homeodomain-only protei 99.4 1.8E-13 6.1E-18 67.8 4.3 45 23-67 3-48 (73)
46 1uhs_A HOP, homeodomain only p 99.4 2E-13 7E-18 67.4 4.2 45 23-67 2-47 (72)
47 1au7_A Protein PIT-1, GHF-1; c 99.4 9.2E-14 3.1E-18 76.8 3.1 50 18-67 83-132 (146)
48 2cuf_A FLJ21616 protein; homeo 99.4 1.9E-13 6.6E-18 70.7 4.0 49 19-67 4-67 (95)
49 2da5_A Zinc fingers and homeob 99.4 3.9E-13 1.3E-17 66.9 4.8 44 24-67 9-52 (75)
50 1du6_A PBX1, homeobox protein 99.4 1.9E-13 6.4E-18 66.1 3.4 47 21-67 2-51 (64)
51 1e3o_C Octamer-binding transcr 99.4 2.1E-13 7.1E-18 76.3 3.9 49 19-67 98-146 (160)
52 3a03_A T-cell leukemia homeobo 99.4 2.6E-13 8.7E-18 64.2 3.4 41 27-67 2-42 (56)
53 1puf_B PRE-B-cell leukemia tra 99.4 4.6E-13 1.6E-17 66.2 4.3 45 23-67 2-49 (73)
54 2xsd_C POU domain, class 3, tr 99.4 2.6E-13 8.7E-18 76.3 3.7 49 19-67 96-144 (164)
55 1lfb_A Liver transcription fac 99.4 4.1E-13 1.4E-17 70.1 3.6 49 19-67 6-75 (99)
56 3d1n_I POU domain, class 6, tr 99.4 7E-13 2.4E-17 73.5 4.7 49 19-67 90-138 (151)
57 2dmn_A Homeobox protein TGIF2L 99.4 1.4E-12 4.8E-17 66.0 4.9 49 19-67 4-55 (83)
58 2da6_A Hepatocyte nuclear fact 99.4 1.1E-12 3.8E-17 68.7 4.6 40 20-59 4-43 (102)
59 1mnm_C Protein (MAT alpha-2 tr 99.4 1.3E-12 4.5E-17 66.5 4.8 49 19-67 24-75 (87)
60 1b72_B Protein (PBX1); homeodo 99.3 1.2E-12 4E-17 66.7 4.1 45 23-67 2-49 (87)
61 2d5v_A Hepatocyte nuclear fact 99.3 9.8E-13 3.3E-17 73.7 3.9 49 19-67 94-142 (164)
62 1k61_A Mating-type protein alp 99.3 1.8E-12 6.2E-17 61.9 4.1 42 26-67 2-46 (60)
63 3l1p_A POU domain, class 5, tr 99.3 2.2E-12 7.6E-17 71.8 3.9 48 20-67 94-141 (155)
64 2ecb_A Zinc fingers and homeob 99.3 8.8E-12 3E-16 63.9 5.1 40 28-67 17-56 (89)
65 1le8_B Mating-type protein alp 99.3 7E-12 2.4E-16 63.4 4.1 44 24-67 4-50 (83)
66 2dmp_A Zinc fingers and homeob 99.2 1.9E-11 6.6E-16 62.6 5.6 40 28-67 19-58 (89)
67 3nau_A Zinc fingers and homeob 99.2 6.9E-12 2.4E-16 61.0 3.1 38 30-67 12-49 (66)
68 2h8r_A Hepatocyte nuclear fact 99.2 9.2E-12 3.2E-16 72.6 3.6 43 18-60 138-180 (221)
69 2cqx_A LAG1 longevity assuranc 99.2 4.2E-12 1.4E-16 62.8 1.8 45 23-67 9-54 (72)
70 1ic8_A Hepatocyte nuclear fact 99.2 3.7E-12 1.3E-16 73.2 1.1 43 18-60 111-153 (194)
71 2e19_A Transcription factor 8; 99.2 3.1E-11 1.1E-15 58.4 3.8 42 26-67 7-48 (64)
72 2l9r_A Homeobox protein NKX-3. 99.2 3.8E-11 1.3E-15 58.9 3.8 42 26-67 8-49 (69)
73 1x2m_A LAG1 longevity assuranc 99.0 2.6E-10 9E-15 55.2 2.7 37 31-67 9-46 (64)
74 3k2a_A Homeobox protein MEIS2; 98.9 7.3E-10 2.5E-14 53.9 3.4 40 28-67 4-46 (67)
75 2da7_A Zinc finger homeobox pr 98.7 1.5E-08 5.3E-13 49.6 2.9 37 31-67 14-50 (71)
76 1mh3_A Maltose binding-A1 home 98.7 1.3E-08 4.4E-13 62.5 3.0 45 23-67 366-410 (421)
77 2lk2_A Homeobox protein TGIF1; 98.5 1.4E-07 4.8E-12 48.2 3.2 41 27-67 10-53 (89)
78 2rgt_A Fusion of LIM/homeobox 92.3 0.00042 1.4E-08 38.4 -7.2 30 20-49 134-163 (169)
79 2ys9_A Homeobox and leucine zi 79.0 1.2 4E-05 21.5 1.7 33 35-67 19-51 (70)
80 2glo_A Brinker CG9653-PA; prot 71.7 4.3 0.00015 18.0 2.6 40 26-66 3-42 (59)
81 1hlv_A CENP-B, major centromer 70.1 6.2 0.00021 20.1 3.3 39 25-66 4-42 (131)
82 2elh_A CG11849-PA, LD40883P; s 64.0 11 0.00037 18.1 5.2 39 23-66 17-55 (87)
83 2eo2_A Adult MALE hypothalamus 63.6 2.1 7E-05 20.7 0.5 39 27-66 27-68 (71)
84 3hug_A RNA polymerase sigma fa 63.3 4.6 0.00016 19.5 1.8 34 28-66 37-70 (92)
85 3i5g_B Myosin regulatory light 62.5 15 0.00051 19.2 5.6 39 25-63 6-49 (153)
86 1ku3_A Sigma factor SIGA; heli 62.5 5.2 0.00018 18.4 1.9 38 28-66 10-47 (73)
87 2o8x_A Probable RNA polymerase 59.8 6.1 0.00021 17.6 1.8 34 28-66 15-48 (70)
88 1p4w_A RCSB; solution structur 59.0 8.8 0.0003 19.2 2.5 35 26-66 32-66 (99)
89 2p7v_B Sigma-70, RNA polymeras 57.5 5.6 0.00019 18.0 1.5 38 28-66 5-42 (68)
90 3ulq_B Transcriptional regulat 55.8 12 0.00041 18.2 2.6 36 25-66 26-61 (90)
91 1tc3_C Protein (TC3 transposas 54.6 11 0.00037 15.1 3.2 34 28-66 5-38 (51)
92 1iuf_A Centromere ABP1 protein 54.0 23 0.00077 18.6 3.8 41 23-66 6-53 (144)
93 3i9v_2 NADH-quinone oxidoreduc 52.2 14 0.00049 20.6 2.8 33 34-66 28-60 (181)
94 1tty_A Sigma-A, RNA polymerase 51.1 10 0.00035 18.1 1.9 38 28-66 18-55 (87)
95 1je8_A Nitrate/nitrite respons 47.6 14 0.00047 17.4 2.0 35 26-66 19-53 (82)
96 3c57_A Two component transcrip 46.2 19 0.00065 17.5 2.5 34 27-66 26-59 (95)
97 2qko_A Possible transcriptiona 44.8 11 0.00036 20.4 1.5 31 34-65 34-64 (215)
98 1s7o_A Hypothetical UPF0122 pr 43.8 15 0.00051 18.7 1.9 34 28-66 22-55 (113)
99 3mzy_A RNA polymerase sigma-H 43.8 13 0.00043 19.1 1.7 32 29-66 110-141 (164)
100 1jko_C HIN recombinase, DNA-in 43.0 19 0.00065 14.6 2.1 32 29-65 6-37 (52)
101 3i5g_C Myosin catalytic light 42.0 33 0.0011 18.0 3.2 36 28-63 2-44 (159)
102 1fse_A GERE; helix-turn-helix 41.5 21 0.00072 15.9 2.1 35 26-66 9-43 (74)
103 1xsv_A Hypothetical UPF0122 pr 41.0 18 0.00062 18.3 1.9 33 29-66 26-58 (113)
104 1fi6_A EH domain protein REPS1 40.3 28 0.00094 16.5 2.5 35 29-63 3-42 (92)
105 2jpc_A SSRB; DNA binding prote 38.1 6.7 0.00023 17.1 -0.0 15 52-66 16-30 (61)
106 1or7_A Sigma-24, RNA polymeras 37.9 21 0.0007 19.0 2.0 33 29-66 141-173 (194)
107 2lhi_A Calmodulin, serine/thre 37.1 32 0.0011 18.3 2.7 38 26-63 2-44 (176)
108 1rp3_A RNA polymerase sigma fa 36.8 22 0.00075 19.5 2.0 33 29-66 188-220 (239)
109 2jn6_A Protein CGL2762, transp 36.4 38 0.0013 16.2 3.5 37 26-66 3-40 (97)
110 2gqb_A Conserved hypothetical 36.1 28 0.00097 18.6 2.2 18 46-63 80-97 (130)
111 1x3u_A Transcriptional regulat 35.7 21 0.00071 16.2 1.6 32 29-66 17-48 (79)
112 2rnj_A Response regulator prot 34.1 24 0.00082 16.8 1.7 34 27-66 28-61 (91)
113 3h0d_A CTSR; protein DNA compl 33.6 16 0.00055 20.2 1.0 16 51-66 26-41 (155)
114 2jt1_A PEFI protein; solution 32.6 15 0.00051 17.6 0.7 20 45-66 22-41 (77)
115 3fmy_A HTH-type transcriptiona 32.2 40 0.0014 15.2 3.1 31 28-65 10-40 (73)
116 4h62_V Mediator of RNA polymer 30.9 30 0.001 13.4 1.4 14 26-39 6-19 (31)
117 2x48_A CAG38821; archeal virus 30.8 36 0.0012 14.3 2.0 31 31-66 18-48 (55)
118 2d1h_A ST1889, 109AA long hypo 30.3 48 0.0016 15.6 2.5 35 28-65 18-52 (109)
119 3o48_A Mitochondria fission 1 30.0 68 0.0023 17.1 4.0 33 27-59 16-50 (134)
120 3u0k_A Rcamp; fluorescent prot 29.8 1.1E+02 0.0039 19.6 5.6 39 25-63 292-335 (440)
121 3t72_q RNA polymerase sigma fa 29.4 41 0.0014 16.7 2.1 38 29-67 20-57 (99)
122 1rzs_A Antirepressor, regulato 29.4 17 0.00057 16.2 0.6 14 52-65 13-26 (61)
123 1qgp_A Protein (double strande 29.2 15 0.00052 17.4 0.4 16 51-66 33-48 (77)
124 2v79_A DNA replication protein 28.9 63 0.0021 16.9 2.9 35 29-66 30-68 (135)
125 3szt_A QCSR, quorum-sensing co 28.7 50 0.0017 18.6 2.7 34 27-66 174-207 (237)
126 2q0o_A Probable transcriptiona 28.6 51 0.0017 18.5 2.6 35 27-67 174-208 (236)
127 1l3l_A Transcriptional activat 28.0 54 0.0018 18.3 2.7 36 26-67 171-206 (234)
128 2pmy_A RAS and EF-hand domain- 27.9 28 0.00097 16.2 1.3 38 26-63 18-60 (91)
129 1qbj_A Protein (double-strande 27.6 17 0.00056 17.6 0.4 15 52-66 30-44 (81)
130 2x4h_A Hypothetical protein SS 27.5 28 0.00095 17.6 1.3 38 28-65 10-47 (139)
131 1c07_A Protein (epidermal grow 27.3 50 0.0017 15.6 2.2 35 29-63 4-43 (95)
132 3g7r_A Putative transcriptiona 27.3 22 0.00075 19.3 0.9 28 36-64 43-70 (221)
133 3k2z_A LEXA repressor; winged 27.1 54 0.0018 17.9 2.5 34 29-64 3-39 (196)
134 4epz_A Transcription anti-term 26.9 56 0.0019 18.1 2.4 23 26-48 133-157 (162)
135 3o9x_A Uncharacterized HTH-typ 25.5 73 0.0025 16.0 3.1 14 52-65 87-100 (133)
136 2heo_A Z-DNA binding protein 1 24.8 20 0.00068 16.3 0.4 14 53-66 29-42 (67)
137 1xwr_A Regulatory protein CII; 24.6 39 0.0013 17.0 1.5 16 51-66 25-40 (97)
138 3fiw_A Putative TETR-family tr 24.5 25 0.00085 19.3 0.8 39 25-64 21-60 (211)
139 2lmt_A Calmodulin-related prot 24.0 41 0.0014 17.0 1.6 34 28-61 3-41 (148)
140 1u78_A TC3 transposase, transp 23.9 78 0.0027 15.8 3.2 35 27-66 5-39 (141)
141 1rr7_A Middle operon regulator 23.4 22 0.00074 18.7 0.4 16 51-66 94-109 (129)
142 3clo_A Transcriptional regulat 22.8 71 0.0024 18.2 2.6 35 27-67 196-230 (258)
143 2k9q_A Uncharacterized protein 22.6 25 0.00086 15.9 0.5 14 52-65 18-31 (77)
144 1r69_A Repressor protein CI; g 22.2 26 0.00089 15.1 0.5 14 52-65 17-30 (69)
145 1sfu_A 34L protein; protein/Z- 21.9 25 0.00085 17.0 0.4 16 51-66 31-46 (75)
146 2lfw_A PHYR sigma-like domain; 21.9 17 0.00057 19.1 -0.2 35 28-67 93-127 (157)
147 3qp6_A CVIR transcriptional re 21.6 87 0.003 18.1 2.8 34 27-66 196-229 (265)
148 2hin_A GP39, repressor protein 21.6 27 0.00094 16.4 0.5 14 52-65 13-26 (71)
149 1zug_A Phage 434 CRO protein; 21.2 28 0.00096 15.1 0.5 14 52-65 19-32 (71)
150 2hxi_A Putative transcriptiona 21.2 55 0.0019 18.4 1.9 39 25-64 25-64 (241)
151 1oyi_A Double-stranded RNA-bin 21.2 28 0.00096 17.0 0.5 17 50-66 31-47 (82)
152 3bd1_A CRO protein; transcript 20.7 30 0.001 15.8 0.6 14 52-65 14-27 (79)
153 1zs4_A Regulatory protein CII; 20.1 27 0.00093 17.2 0.4 15 52-66 27-41 (83)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=78.27 Aligned_cols=53 Identities=36% Similarity=0.453 Sum_probs=47.9
Q ss_pred CcccccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 15 DSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 15 ~~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+...++.++.||.|+..|+..||..|..++||+..++.+||..|+|++.+|+
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 10 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp SCCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 33445677889999999999999999999999999999999999999999885
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=9.3e-16 Score=77.43 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=45.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQ----THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.+|.||.||..|+..||..|+. ++||+..++.+||..|||++.+||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccccc
Confidence 4567889999999999999999999 999999999999999999999885
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=76.64 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=47.0
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 17 FVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 17 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
...++.++.||.|+..|+..||..|..++||+..++..||..|||++.+|+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 345677889999999999999999999999999999999999999999875
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.60 E-value=2.1e-15 Score=76.14 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=44.9
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQ-----THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
...+.+|.||.||..|+..|| .|.. ++||+..+|.+||..|+|++.+||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 345678899999999999999 8999 999999999999999999999885
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=1.5e-15 Score=74.80 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=45.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 3456788999999999999999999999999999999999999999884
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=76.46 Aligned_cols=50 Identities=28% Similarity=0.325 Sum_probs=46.4
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
...+.++.||.||..|+..|+..|..++||+..++.+||..|||++.+|+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 35667889999999999999999999999999999999999999999875
No 7
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=74.29 Aligned_cols=49 Identities=31% Similarity=0.485 Sum_probs=45.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456889999999999999999999999999999999999999999885
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.58 E-value=3e-15 Score=74.94 Aligned_cols=50 Identities=40% Similarity=0.495 Sum_probs=46.2
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 35567888999999999999999999999999999999999999999885
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=74.11 Aligned_cols=48 Identities=54% Similarity=0.760 Sum_probs=45.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+..++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 456789999999999999999999999999999999999999999884
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=73.83 Aligned_cols=49 Identities=31% Similarity=0.335 Sum_probs=45.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 4456789999999999999999999999999999999999999999874
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.58 E-value=4.2e-15 Score=74.41 Aligned_cols=51 Identities=33% Similarity=0.407 Sum_probs=46.7
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 17 FVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 17 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
...++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 345567889999999999999999999999999999999999999999885
No 12
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.5e-15 Score=73.39 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=45.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQ-THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+.++|.||.|+.+|+..|+..|+. ++||+...|..||..+||++.+||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4467889999999999999999999 999999999999999999998875
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.57 E-value=2.9e-15 Score=72.44 Aligned_cols=47 Identities=38% Similarity=0.528 Sum_probs=42.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 21 ~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 35778999999999999999999999999999999999999999885
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=74.15 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=45.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456789999999999999999999999999999999999999999874
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.56 E-value=2.4e-15 Score=72.48 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=39.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 21 ~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45778999999999999999999999999999999999999999874
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=5.1e-15 Score=74.54 Aligned_cols=49 Identities=59% Similarity=0.895 Sum_probs=45.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.|+..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3557889999999999999999999999999999999999999999874
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.56 E-value=4.4e-15 Score=72.35 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=44.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 21 ~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 35789999999999999999999999999999999999999999874
No 18
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=5.7e-15 Score=74.37 Aligned_cols=48 Identities=60% Similarity=0.942 Sum_probs=45.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+..++.||.|+..|+..||..|..++||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456789999999999999999999999999999999999999999884
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.56 E-value=3.4e-15 Score=71.78 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=40.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4778999999999999999999999999999999999999999875
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=5.6e-15 Score=70.29 Aligned_cols=45 Identities=38% Similarity=0.592 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 468999999999999999999999999999999999999999874
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.2e-15 Score=73.72 Aligned_cols=48 Identities=35% Similarity=0.481 Sum_probs=45.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456789999999999999999999999999999999999999999874
No 22
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.55 E-value=3.3e-15 Score=71.72 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=37.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 456788999999999999999999999999999999999999999874
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-14 Score=75.30 Aligned_cols=49 Identities=35% Similarity=0.512 Sum_probs=45.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 4556789999999999999999999999999999999999999999885
No 24
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1e-14 Score=71.77 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=44.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
...++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 345678999999999999999999999999999999999999999884
No 25
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=72.45 Aligned_cols=49 Identities=69% Similarity=1.021 Sum_probs=45.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456788999999999999999999999999999999999999998874
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.54 E-value=1.2e-14 Score=72.09 Aligned_cols=48 Identities=29% Similarity=0.443 Sum_probs=44.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 456788999999999999999999999999999999999999999885
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.53 E-value=9e-15 Score=71.65 Aligned_cols=46 Identities=43% Similarity=0.556 Sum_probs=43.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+++.||.||..|+..||..|..++||+..++..||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 5778999999999999999999999999999999999999999874
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.53 E-value=8.6e-15 Score=70.11 Aligned_cols=45 Identities=40% Similarity=0.573 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999999999999999999999999999874
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.53 E-value=1e-14 Score=73.61 Aligned_cols=50 Identities=64% Similarity=1.024 Sum_probs=44.8
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..++.++.||.|+..|+..|+..|..++||+..++..||..+||++.+|+
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 35667889999999999999999999999999999999999999999874
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.52 E-value=1.4e-14 Score=73.17 Aligned_cols=48 Identities=35% Similarity=0.482 Sum_probs=40.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+..++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 446778999999999999999999999999999999999999999875
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=68.75 Aligned_cols=46 Identities=35% Similarity=0.517 Sum_probs=43.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999999874
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.51 E-value=1.7e-14 Score=70.65 Aligned_cols=46 Identities=39% Similarity=0.538 Sum_probs=43.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 4678999999999999999999999999999999999999999874
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=75.06 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=42.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
....++.|+.||..|+..|+..|..++||+..++.+||..+||++.+||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 4556778999999999999999999999999999999999999999885
No 34
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.51 E-value=1e-14 Score=71.49 Aligned_cols=46 Identities=33% Similarity=0.453 Sum_probs=43.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 4678999999999999999999999999999999999999999875
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.50 E-value=1.7e-14 Score=73.73 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=41.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 4456789999999999999999999999999999999999999999875
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=70.05 Aligned_cols=45 Identities=49% Similarity=0.671 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.||.||..|+..||..|..++||+..++..||..+||++.+|+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 678999999999999999999999999999999999999999874
No 37
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.50 E-value=5.5e-15 Score=72.41 Aligned_cols=47 Identities=57% Similarity=0.845 Sum_probs=44.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 21 ~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 46789999999999999999999999999999999999999999874
No 38
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=73.45 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=45.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQT----HYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.||.||..|+..||..|..+ +||+..++.+||..+||++.+|+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 45578899999999999999999999 99999999999999999999885
No 39
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=3.2e-14 Score=73.89 Aligned_cols=48 Identities=33% Similarity=0.453 Sum_probs=41.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+..++.||.||..|+..||..|..++||+..++.+||..|||++.+|+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 456788999999999999999999999999999999999999999885
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=6.4e-14 Score=70.01 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 25 NRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 25 ~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.|+.||.+|+..|+..|..++||+..++++||..+||++.||+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 5667999999999999999999999999999999999999885
No 41
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=1.4e-13 Score=68.17 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=44.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||+
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 55 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4456788999999999999999987 999999999999999999999874
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.5e-14 Score=69.26 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=42.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+...|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 3456899999999999999999999999999999999999999875
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=68.62 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=43.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 22 ~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.||.||..|+..|+..|..++||+..++.+||..+||++.+||
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHee
Confidence 4678999999999999999999999999999999999999999885
No 44
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.45 E-value=6.8e-14 Score=66.95 Aligned_cols=43 Identities=74% Similarity=1.050 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 25 NRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 25 ~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 5899999999999999999999999999999999999999874
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.8e-13 Score=67.79 Aligned_cols=45 Identities=31% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAFAQ-THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.||.||..|+..||..|.. ++||+..++.+||..+||++.+|+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467999999999999999995 999999999999999999999885
No 46
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=2e-13 Score=67.40 Aligned_cols=45 Identities=33% Similarity=0.330 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAFAQ-THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+.|+.|+..|+..||..|.. ++||+..++.+||..+||++.+|+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 457899999999999999996 999999999999999999999885
No 47
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.42 E-value=9.2e-14 Score=76.79 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=42.6
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..+++++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 34567788999999999999999999999999999999999999999885
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.9e-13 Score=70.70 Aligned_cols=49 Identities=31% Similarity=0.450 Sum_probs=45.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN---------------LTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~---------------l~~~qVk 67 (67)
.++.++.|+.|+..|+..||..|..++||+..++.+||..++ |++.+|+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~ 67 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 67 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHH
Confidence 456788999999999999999999999999999999999999 9998874
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.9e-13 Score=66.91 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 24 RNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 24 r~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 35667999999999999999999999999999999999999884
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=1.9e-13 Score=66.12 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=43.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 21 KQRRNRTTFTLQQLEELETAF---AQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 21 ~~rr~Rt~~s~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..++.|+.|+..|+..|+..| ..++||+..++.+||..+||++.||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 51 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 51 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 356789999999999999999 99999999999999999999999874
No 51
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.40 E-value=2.1e-13 Score=76.30 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=41.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..++|+.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 3467889999999999999999999999999999999999999999885
No 52
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=64.17 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
|.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 67999999999999999999999999999999999999885
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.39 E-value=4.6e-13 Score=66.24 Aligned_cols=45 Identities=36% Similarity=0.501 Sum_probs=42.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAF---AQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~ 49 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 99999999999999999999999874
No 54
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.39 E-value=2.6e-13 Score=76.26 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=37.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+++|+.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 4567889999999999999999999999999999999999999999885
No 55
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.37 E-value=4.1e-13 Score=70.08 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=39.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMK------------------IN---LTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~------------------l~---l~~~qVk 67 (67)
.++.++.||.|+..|+..||..|..++||+...|++||.. || |++.+|+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 4567889999999999999999999999999999999999 88 9888774
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.37 E-value=7e-13 Score=73.51 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=45.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+++++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 4567789999999999999999999999999999999999999999885
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=66.04 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=44.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..+.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~ 55 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQIS 55 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3456778999999999999999987 699999999999999999999884
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=68.66 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=38.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKI 59 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l 59 (67)
++.||.||.|++.|+..||..|..++||+..+|++||..+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.35 E-value=1.3e-12 Score=66.55 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=44.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..++++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||+
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~ 75 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 75 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 3456667999999999999999999 999999999999999999999874
No 60
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.34 E-value=1.2e-12 Score=66.67 Aligned_cols=45 Identities=36% Similarity=0.501 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAF---AQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
|+.|+.|+..|+..|+..| ..++||+..++..||..+||++.||+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~ 49 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 99999999999999999999999874
No 61
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.33 E-value=9.8e-13 Score=73.66 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=41.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 19 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..+.++.||.|+..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~ 142 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 4456889999999999999999999999999999999999999999874
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.32 E-value=1.8e-12 Score=61.88 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 26 RTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
|+.|+..|+..|+..|.. ++||+..++.+||..+||++.+|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~ 46 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 678999999999999999 999999999999999999999874
No 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.29 E-value=2.2e-12 Score=71.80 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=45.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+++++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~ 141 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhee
Confidence 456778999999999999999999999999999999999999999885
No 64
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=8.8e-12 Score=63.91 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.||.+|+..||..|..++||+..+|.+||..|||++.|||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 6899999999999999999999999999999999999985
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.25 E-value=7e-12 Score=63.41 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 24 RNRTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 24 r~Rt~~s~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~ 50 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 50 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcc
Confidence 35666999999999999999 999999999999999999999874
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=62.55 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 3899999999999999999999999999999999999885
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.22 E-value=6.9e-12 Score=60.96 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 30 TLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 30 s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVk 49 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 68999999999999999999999999999999999885
No 68
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.21 E-value=9.2e-12 Score=72.61 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=37.8
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN 60 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 60 (67)
..++.||.|+.|++.|+..|+..|..++||+..+|++||..++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 4567788999999999999999999999999999999999987
No 69
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=4.2e-12 Score=62.80 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAF-AQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F-~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+.|+.++..|+..||..| ..++||+..++.+||..+||++.+||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 3456667889999999999 99999999999999999999999885
No 70
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.18 E-value=3.7e-12 Score=73.17 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=36.5
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q psy14727 18 VRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKIN 60 (67)
Q Consensus 18 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 60 (67)
..++.||.||.|+..|+..|+..|..++||+...|++||..++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 3456788999999999999999999999999999999999999
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=3.1e-11 Score=58.44 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+..++..|+..||..|..++||+..++.+||..+||++.+||
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 445679999999999999999999999999999999999885
No 72
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.15 E-value=3.8e-11 Score=58.94 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
-..+|..|+..||..|..++||+..+|.+||..+||++.+||
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 346899999999999999999999999999999999999885
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.99 E-value=2.6e-10 Score=55.18 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 31 LQQLEELETAF-AQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 31 ~~q~~~Le~~F-~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..|+..||..| ..++||+..+|.+||..|||+++|||
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 44799999999 67999999999999999999999985
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.94 E-value=7.3e-10 Score=53.92 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 28 TFTLQQLEELETAFA---QTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.|+.+|+..|+..|. .++||+..++.+||..+||++.||+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~ 46 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVN 46 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 689999999999999 9999999999999999999999874
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.5e-08 Score=49.57 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 31 LQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 31 ~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+|+..|+..|..|++|+..++..||..+||+..+||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 5789999999999999999999999999999998875
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.66 E-value=1.3e-08 Score=62.53 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
++.++.++..|+..|+..|+.++||+..+|.+||..+||+++|||
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~ 410 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 410 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 445778999999999999999999999999999999999999985
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=48.18 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccccC
Q psy14727 27 TTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..|+..+...|+.-|.. ++||+..++.+||..+||++.||+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~ 53 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC 53 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 45889999999999987 999999999999999999999884
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=92.32 E-value=0.00042 Score=38.43 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=21.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q psy14727 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDV 49 (67)
Q Consensus 20 ~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~ 49 (67)
.+.+|.||.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456789999999999999999999999864
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.97 E-value=1.2 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 35 EELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 35 ~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
+.|+..|...+.+....-..|+.+.+|+..|||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 568999999999999999999999999987764
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=71.74 E-value=4.3 Score=18.03 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
|..|+.+........+... ........++|..+|++...|
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHH
Confidence 4468888877664444433 221112458899999976543
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.11 E-value=6.2 Score=20.11 Aligned_cols=39 Identities=10% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 25 NRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 25 ~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.|..||.++...+-..+..+.... ..++|..+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHH
Confidence 467899999887776665454443 236788899886543
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.96 E-value=11 Score=18.08 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=24.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
++.+..|+.++....-..+... . ...++|..+|++...|
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTL 55 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHH
Confidence 4456678998865555555422 2 2457899999976543
No 83
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.58 E-value=2.1 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHcCCCcccc
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDV---FTREDLAMKINLTEARV 66 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~---~~r~~La~~l~l~~~qV 66 (67)
..|++.|+..|++.=-...-|+. .+... -..|++.+..|
T Consensus 27 R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~-FaRLdIDP~TI 68 (71)
T 2eo2_A 27 REFSEIQLSRLKKLGIHKTDPSTLTEEEVRK-FARLNIDPATI 68 (71)
T ss_dssp CCCCHHHHHHHHHHTCCCCSTTTCCHHHHHH-HHHTCCCSTTC
T ss_pred eecCHHHHHHHHHcCCCCCCcccCCHHHHhh-ceecccCccce
Confidence 36999999999887433334544 33333 34566666543
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.29 E-value=4.6 Score=19.53 Aligned_cols=34 Identities=9% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.++..+...+...|.... .-.++|..+|++...|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV 70 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTV 70 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHH
Confidence 356777777766543332 4568899999988665
No 85
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=62.52 E-value=15 Score=19.23 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy14727 25 NRTTFTLQQLEELETAFAQ-----THYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 25 ~Rt~~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 63 (67)
.|..+|..|+..|..+|.. +-+++..+-..+...+|...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 3567999999999999863 45778877777777777654
No 86
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.51 E-value=5.2 Score=18.41 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.+++.+...+...|...-. ....-.++|..+|++...|
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV 47 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERI 47 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHH
Confidence 4678888888877741100 0113458899999998765
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.83 E-value=6.1 Score=17.64 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.+++.+...+...|... ..-.++|..+|++...|
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv 48 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTI 48 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHH
Confidence 36777777777665433 13568899999987655
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=59.01 E-value=8.8 Score=19.15 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
...+++.+...|...+.-. .-.++|..+++++..|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV 66 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTI 66 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 5568999999987755322 3468999999988665
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.47 E-value=5.6 Score=18.00 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.+++.+...+...|..+.+- ...-.++|..+|++...|
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV 42 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERI 42 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHH
Confidence 35777778887776221111 113458899999998665
No 90
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.76 E-value=12 Score=18.22 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 25 NRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 25 ~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
....+|..+...|.....-. ...++|..|+++...|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV 61 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSI 61 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 45568999999987766322 4568899999988765
No 91
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=54.55 E-value=11 Score=15.12 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.++..+...+...+... + ...++|..+|++...|
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 46677665555545433 2 3557899999987544
No 92
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=53.98 E-value=23 Score=18.65 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hc--CCCcccc
Q psy14727 23 RRNRTTFTLQQLEELETAF-AQTHYPDVFTREDLAM----KI--NLTEARV 66 (67)
Q Consensus 23 rr~Rt~~s~~q~~~Le~~F-~~~~yp~~~~r~~La~----~l--~l~~~qV 66 (67)
++.|..+|.+|...+-..+ ..++-.. ..+||. .+ +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHH
Confidence 4578889999999998888 5555443 334566 66 5554443
No 93
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=52.25 E-value=14 Score=20.58 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 34 LEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 34 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+..|...=+...|.+......+|..|+++..+|
T Consensus 28 i~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 28 MPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 334444434457999999999999999998765
No 94
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=51.06 E-value=10 Score=18.11 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.+++.+...+...|...-- ....-.++|..+|++...|
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV 55 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERI 55 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHH
Confidence 3577787888777641100 0113458899999998665
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=47.60 E-value=14 Score=17.45 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
-..++..+...|...+. . ..-.++|..+|++...|
T Consensus 19 ~~~Lt~~e~~vl~l~~~-g-----~s~~eIA~~l~is~~tV 53 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ-G-----LPNKMIARRLDITESTV 53 (82)
T ss_dssp GGGSCHHHHHHHHHHTT-T-----CCHHHHHHHHTSCHHHH
T ss_pred HccCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHH
Confidence 34588888888877432 2 24568899999988655
No 96
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.23 E-value=19 Score=17.46 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
..++..+...|...+.-. .-.++|..+|++...|
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV 59 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTV 59 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 357888988888753322 3468899999988655
No 97
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=44.77 E-value=11 Score=20.38 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCccc
Q psy14727 34 LEELETAFAQTHYPDVFTREDLAMKINLTEAR 65 (67)
Q Consensus 34 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 65 (67)
+......|...-|-... -..||...|++...
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t 64 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKGT 64 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTC
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcch
Confidence 34455567777765443 44789999998753
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.85 E-value=15 Score=18.72 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.+++.+...+...|.... .-.++|..+|++...|
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV 55 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAV 55 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHH
Confidence 367777777776654332 3568899999987655
No 99
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.76 E-value=13 Score=19.15 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+++.+...+. .| .....-.++|..+|++...|
T Consensus 110 L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV 141 (164)
T 3mzy_A 110 FSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSI 141 (164)
T ss_dssp SCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHH
Confidence 4555555555 22 22234568899999988665
No 100
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=43.02 E-value=19 Score=14.59 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccc
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEAR 65 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 65 (67)
++.++...+...+... . ...++|..+|++...
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~T 37 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVST 37 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHH
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHH
Confidence 4455554444444433 2 345789999988654
No 101
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=42.02 E-value=33 Score=17.99 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHhh-----c--CCCCHHHHHHHHHHcCCCc
Q psy14727 28 TFTLQQLEELETAFAQ-----T--HYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~-----~--~yp~~~~r~~La~~l~l~~ 63 (67)
.+|.+|+..|..+|.. + -+++..+-..+...||+.+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 4789999999998853 2 3566666656666777654
No 102
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.46 E-value=21 Score=15.90 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
-..+++.+...+...+. . + .-.++|..+|++...|
T Consensus 9 ~~~L~~~e~~il~~~~~-g-~----s~~eIA~~l~is~~tV 43 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ-D-K----TTKEIASELFISEKTV 43 (74)
T ss_dssp CCCCCHHHHHHHHHHTT-T-C----CHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHc-C-C----CHHHHHHHHCCCHHHH
Confidence 34578888888877322 2 2 3457899999987654
No 103
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.95 E-value=18 Score=18.31 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+++.+...+...|.... .-.++|..+|++...|
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV 58 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAV 58 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHH
Confidence 56667777665543332 4568899999987655
No 104
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=40.31 E-value=28 Score=16.47 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy14727 29 FTLQQLEELETAFAQ-----THYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 63 (67)
++..+...+...|.. +-+.+..+-..+...+|++.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 466777777777753 33455555555555556554
No 105
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.06 E-value=6.7 Score=17.11 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=11.6
Q ss_pred HHHHHHHcCCCcccc
Q psy14727 52 REDLAMKINLTEARV 66 (67)
Q Consensus 52 r~~La~~l~l~~~qV 66 (67)
-.++|..+|+++..|
T Consensus 16 ~~eIA~~l~is~~tV 30 (61)
T 2jpc_A 16 NHGISEKLHISIKTV 30 (61)
T ss_dssp SHHHHHHTCSCHHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 357899999988655
No 106
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=37.89 E-value=21 Score=19.03 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+++.+...+...|-.+ ..-.++|..+|++...|
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV 173 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTV 173 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHH
Confidence 3455555554433222 23458899999988665
No 107
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.11 E-value=32 Score=18.34 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy14727 26 RTTFTLQQLEELETAFAQ-----THYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 63 (67)
++.+|.+|+..|..+|.. +-+++..+-..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 456888999999988853 34677776666666666654
No 108
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.76 E-value=22 Score=19.50 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+++.+...+...|... ..-.++|..+|++...|
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V 220 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRV 220 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHH
Confidence 5566666666555322 24568899999987655
No 109
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.41 E-value=38 Score=16.16 Aligned_cols=37 Identities=5% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCcccc
Q psy14727 26 RTTFTLQQLEELETAFAQT-HYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV 66 (67)
|..||.++....-..+... .+ ...++|..+|++...|
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl 40 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTL 40 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHH
Confidence 3468888776555444322 22 3457899999876543
No 110
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=36.12 E-value=28 Score=18.60 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHcCCCc
Q psy14727 46 YPDVFTREDLAMKINLTE 63 (67)
Q Consensus 46 yp~~~~r~~La~~l~l~~ 63 (67)
-.+...|.+||..|+++.
T Consensus 80 DsSl~~RkeLA~eL~~~~ 97 (130)
T 2gqb_A 80 DSSLSARKELAKELGYSG 97 (130)
T ss_dssp CCSHHHHHHHHHHHTCCC
T ss_pred CccHHHHHHHHHHhCCCC
Confidence 367789999999999874
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.70 E-value=21 Score=16.24 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+++.+...+...+. . ..-.++|..+|++...|
T Consensus 17 L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV 48 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G----LPNKSIAYDLDISPRTV 48 (79)
T ss_dssp HCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHH
Confidence 45666666655321 1 13457888888887654
No 112
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.09 E-value=24 Score=16.80 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
..+++.+...|...+.-. .-.++|..+|++...|
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV 61 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTV 61 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 357888888887743322 2347888899887655
No 113
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=33.55 E-value=16 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCCcccc
Q psy14727 51 TREDLAMKINLTEARV 66 (67)
Q Consensus 51 ~r~~La~~l~l~~~qV 66 (67)
.|.+||..++|-++||
T Consensus 26 ~R~eLA~~F~CvPSQI 41 (155)
T 3h0d_A 26 KRSEIANKFRCVPSQI 41 (155)
T ss_dssp CHHHHHHHTTSCTHHH
T ss_pred eHHHHHHhcCCChhhc
Confidence 5889999999999886
No 114
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=32.63 E-value=15 Score=17.60 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHcCCCcccc
Q psy14727 45 HYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 45 ~yp~~~~r~~La~~l~l~~~qV 66 (67)
.|| +...+||..+|++...|
T Consensus 22 g~~--psv~EIa~~lgvS~~TV 41 (77)
T 2jt1_A 22 GAP--VKTRDIADAAGLSIYQV 41 (77)
T ss_dssp TSC--EEHHHHHHHHTCCHHHH
T ss_pred CCC--cCHHHHHHHHCCCHHHH
Confidence 355 34558999999986543
No 115
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=32.19 E-value=40 Score=15.20 Aligned_cols=31 Identities=6% Similarity=0.027 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEAR 65 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 65 (67)
.++...+..+...... ...+||..+|++...
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~t 40 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNA 40 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTH
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHH
Confidence 4666666665543322 245677777777643
No 116
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=30.94 E-value=30 Score=13.37 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=8.0
Q ss_pred CCCCCHHHHHHHHH
Q psy14727 26 RTTFTLQQLEELET 39 (67)
Q Consensus 26 Rt~~s~~q~~~Le~ 39 (67)
-|+|...|+.+|..
T Consensus 6 vtrfdekqieelld 19 (31)
T 4h62_V 6 VTRFDEKQIEELLD 19 (31)
T ss_dssp ----CHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 36788999988754
No 117
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.85 E-value=36 Score=14.26 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 31 LQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 31 ~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
+.+...+...+... + ...++|..+|++...|
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV 48 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKV 48 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 55555554444322 2 3558899999987654
No 118
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=30.28 E-value=48 Score=15.60 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEAR 65 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 65 (67)
.++..+...|......+..+ ...+||..+|++...
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~---t~~ela~~l~is~~t 52 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPI---TSEELADIFKLSKTT 52 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCE---EHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHHcCCCC---CHHHHHHHHCcCHHH
Confidence 35677777776666433322 355889999988754
No 119
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=29.98 E-value=68 Score=17.14 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHc
Q psy14727 27 TTFTLQQLEELETAFAQ--THYPDVFTREDLAMKI 59 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~--~~yp~~~~r~~La~~l 59 (67)
...+++++..|+.-|.. +..|+...+-++|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 45789999999999975 6788888888877554
No 120
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=29.82 E-value=1.1e+02 Score=19.64 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCCCc
Q psy14727 25 NRTTFTLQQLEELETAFA-----QTHYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 25 ~Rt~~s~~q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~ 63 (67)
.+..++.+|+..|...|. .+-+++..+-..+...+|+..
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~ 335 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 335 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC
Confidence 467899999999999985 345677777766667776543
No 121
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.37 E-value=41 Score=16.71 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 29 FTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.++.+...+...|..+.+ ....-.++|..+|++...|+
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr 57 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIR 57 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHH
Confidence 556666677666642211 11234588999999887653
No 122
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.36 E-value=17 Score=16.20 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.9
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..+|++...
T Consensus 13 q~~lA~~lGvs~~~ 26 (61)
T 1rzs_A 13 QRAVAKALGISDAA 26 (61)
T ss_dssp HHHHHHHHTCCHHH
T ss_pred HHHHHHHhCCCHHH
Confidence 56899999988643
No 123
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.19 E-value=15 Score=17.38 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.2
Q ss_pred HHHHHHHHcCCCcccc
Q psy14727 51 TREDLAMKINLTEARV 66 (67)
Q Consensus 51 ~r~~La~~l~l~~~qV 66 (67)
...+||..||++...|
T Consensus 33 t~~eLA~~Lgvs~~tV 48 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEI 48 (77)
T ss_dssp EHHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 3458999999987654
No 124
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=28.93 E-value=63 Score=16.94 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCcccc
Q psy14727 29 FTLQQLEELETAFAQ----THYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV 66 (67)
.|..++..|-..+.. +.+|+. ..||..+|+++..|
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v 68 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEEC 68 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHH
Confidence 455666655554432 455654 47899999988654
No 125
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=28.72 E-value=50 Score=18.63 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
..+|+.+...|.-...-. .-.++|..||+++..|
T Consensus 174 ~~Lt~re~~vl~~~~~G~------s~~eIa~~l~is~~tV 207 (237)
T 3szt_A 174 VRLTARETEMLKWTAVGK------TYGEIGLILSIDQRTV 207 (237)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHH
Confidence 456777777776543221 3567888888888765
No 126
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=28.57 E-value=51 Score=18.48 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..+|+.+...|.-..+-. .-.++|..||+++..|+
T Consensus 174 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~ 208 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGK------TASVTANLTGINARTVQ 208 (236)
T ss_dssp GSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 458888888886644322 34678999999887653
No 127
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=28.00 E-value=54 Score=18.33 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
...+|+.+...|.-... . ..-.++|..||+++..|+
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g-----~s~~eIa~~l~is~~tV~ 206 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-G-----KTMEEIADVEGVKYNSVR 206 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T-----CCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHH
Confidence 34688888888866432 2 245688999999887653
No 128
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.92 E-value=28 Score=16.20 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy14727 26 RTTFTLQQLEELETAFAQ-----THYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 63 (67)
-..++..+...+...|.. +-+++..+-..+...+|++.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~ 60 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRP 60 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCH
Confidence 345778888888888853 34666666666666677554
No 129
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=27.59 E-value=17 Score=17.57 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.8
Q ss_pred HHHHHHHcCCCcccc
Q psy14727 52 REDLAMKINLTEARV 66 (67)
Q Consensus 52 r~~La~~l~l~~~qV 66 (67)
..+||..||++...|
T Consensus 30 ~~eLA~~Lgvsr~tV 44 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEI 44 (81)
T ss_dssp HHHHHHHHTCCHHHH
T ss_pred HHHHHHHHCcCHHHH
Confidence 457999999987654
No 130
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=27.47 E-value=28 Score=17.64 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccc
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEAR 65 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 65 (67)
.++..+...|...+.....-....-.+||..++++...
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~t 47 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSS 47 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHH
Confidence 36777888877665421111112345789999988654
No 131
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.30 E-value=50 Score=15.63 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy14727 29 FTLQQLEELETAFAQ-----THYPDVFTREDLAMKINLTE 63 (67)
Q Consensus 29 ~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 63 (67)
++..+...+...|.. +-+.+..+-..+...+|++.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 43 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPS 43 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCH
Confidence 355666667766642 33556655555555556554
No 132
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=27.27 E-value=22 Score=19.27 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHcCCCcc
Q psy14727 36 ELETAFAQTHYPDVFTREDLAMKINLTEA 64 (67)
Q Consensus 36 ~Le~~F~~~~yp~~~~r~~La~~l~l~~~ 64 (67)
.-...|...-|-... -..||...|++..
T Consensus 43 aA~~lf~~~G~~~~t-~~~IA~~AGvs~~ 70 (221)
T 3g7r_A 43 TATRIFYAEGIHSVG-IDRITAEAQVTRA 70 (221)
T ss_dssp HHHHHHHHHCSTTSC-HHHHHHHHTCCHH
T ss_pred HHHHHHHHhCcccCC-HHHHHHHhCCCHH
Confidence 444457777765444 3478888888764
No 133
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=27.06 E-value=54 Score=17.94 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcc
Q psy14727 29 FTLQQLEELETAF---AQTHYPDVFTREDLAMKINLTEA 64 (67)
Q Consensus 29 ~s~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~ 64 (67)
+|..|...|+... ....||.. ..+||..+|++..
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s--~~eia~~lgl~~~ 39 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPS--VREIARRFRITPR 39 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHTSCHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHcCCCcH
Confidence 5677877777653 34556533 4488999999864
No 134
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=26.86 E-value=56 Score=18.11 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHH--HhhcCCCC
Q psy14727 26 RTTFTLQQLEELETA--FAQTHYPD 48 (67)
Q Consensus 26 Rt~~s~~q~~~Le~~--F~~~~yp~ 48 (67)
....|.+|...++.. +..|+||-
T Consensus 133 ~~~Lt~eq~e~ieel~n~eeNpYP~ 157 (162)
T 4epz_A 133 ISDLTDEQKEIIEELRNFEENQYPW 157 (162)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSCGG
T ss_pred cccCCHHHHHHHHHHhccccCCCch
Confidence 346788998888765 78899983
No 135
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.48 E-value=73 Score=16.03 Aligned_cols=14 Identities=0% Similarity=-0.133 Sum_probs=8.4
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..+|++...
T Consensus 87 q~~la~~~g~s~~~ 100 (133)
T 3o9x_A 87 QKEASEIFGGGVNA 100 (133)
T ss_dssp HHHHHHHHCSCTTH
T ss_pred HHHHHHHHCCCHHH
Confidence 34567777766543
No 136
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=24.77 E-value=20 Score=16.34 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=10.9
Q ss_pred HHHHHHcCCCcccc
Q psy14727 53 EDLAMKINLTEARV 66 (67)
Q Consensus 53 ~~La~~l~l~~~qV 66 (67)
.+||..+|++...|
T Consensus 29 ~eLA~~lglsr~tv 42 (67)
T 2heo_A 29 FQLVKKCQVPKKTL 42 (67)
T ss_dssp HHHHHHHCSCHHHH
T ss_pred HHHHHHHCcCHHHH
Confidence 47999999987543
No 137
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=24.62 E-value=39 Score=16.99 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCcccc
Q psy14727 51 TREDLAMKINLTEARV 66 (67)
Q Consensus 51 ~r~~La~~l~l~~~qV 66 (67)
....+|..+|+++.+|
T Consensus 25 gq~~vA~~iGV~~StI 40 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQI 40 (97)
T ss_dssp CHHHHHHHHTCCTTTH
T ss_pred hHHHHHHHhCCCHHHH
Confidence 3457899999999875
No 138
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=24.55 E-value=25 Score=19.32 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=21.4
Q ss_pred CCCCCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHHcCCCcc
Q psy14727 25 NRTTFTLQQLE-ELETAFAQTHYPDVFTREDLAMKINLTEA 64 (67)
Q Consensus 25 ~Rt~~s~~q~~-~Le~~F~~~~yp~~~~r~~La~~l~l~~~ 64 (67)
.|...+..++. .-...|...-|-... -..||..+|++..
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~ 60 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDGVS-TRRLAKRLGVEQP 60 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGGCC-HHHHHHHHTSCTH
T ss_pred cccccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCCChh
Confidence 34445555543 444556666654333 3478888888764
No 139
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=24.01 E-value=41 Score=17.01 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCC
Q psy14727 28 TFTLQQLEELETAFAQ-----THYPDVFTREDLAMKINL 61 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l 61 (67)
-+|.+|+..|...|.. +-+++..+-..+...++.
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~ 41 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQ 41 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCC
Confidence 3788999999888743 223444444444444443
No 140
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.93 E-value=78 Score=15.76 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
..++.++...+...+... + ...++|..+|++...|
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv 39 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCI 39 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHH
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 357788777666666433 2 3457889999887544
No 141
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=23.42 E-value=22 Score=18.72 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCcccc
Q psy14727 51 TREDLAMKINLTEARV 66 (67)
Q Consensus 51 ~r~~La~~l~l~~~qV 66 (67)
...+||.+.||++++|
T Consensus 94 n~~eLArkYgLSer~I 109 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTV 109 (129)
T ss_dssp CHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCCCHHHH
Confidence 4568999999998765
No 142
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.83 E-value=71 Score=18.20 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
..+++.+...+.-.++.. .-.++|..||+++..|+
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk 230 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVN 230 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 468888888887754222 35688999999987653
No 143
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.60 E-value=25 Score=15.88 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=10.4
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..+|++...
T Consensus 18 q~~lA~~~gis~~~ 31 (77)
T 2k9q_A 18 AKSVAEEMGISRQQ 31 (77)
T ss_dssp HHHHHHHHTSCHHH
T ss_pred HHHHHHHhCCCHHH
Confidence 45788888887654
No 144
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=22.21 E-value=26 Score=15.14 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=10.2
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..+|++...
T Consensus 17 q~~lA~~~gis~~~ 30 (69)
T 1r69_A 17 QAELAQKVGTTQQS 30 (69)
T ss_dssp HHHHHHHHTSCHHH
T ss_pred HHHHHHHHCcCHHH
Confidence 45788888887654
No 145
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=21.95 E-value=25 Score=16.98 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCcccc
Q psy14727 51 TREDLAMKINLTEARV 66 (67)
Q Consensus 51 ~r~~La~~l~l~~~qV 66 (67)
.-.+||.+||++...|
T Consensus 31 Ta~~IAkkLg~sK~~v 46 (75)
T 1sfu_A 31 TAISLSNRLKINKKKI 46 (75)
T ss_dssp CHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHCCCHHHH
Confidence 4568999999987543
No 146
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.90 E-value=17 Score=19.14 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727 28 TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67 (67)
Q Consensus 28 ~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 67 (67)
.+++.+...+. -.|.....-.++|..+|+++..|+
T Consensus 93 ~Lp~~~r~vl~-----L~~~~g~s~~EIA~~lgis~~tV~ 127 (157)
T 2lfw_A 93 RMTPLSRQALL-----LTAMEGFSPEDAAYLIEVDTSEVE 127 (157)
T ss_dssp TSCTTHHHHHT-----TTSSSCCCHHHHHHTTTSCHHHHH
T ss_pred hCCHHHHHHHH-----HHHHcCCCHHHHHHHHCcCHHHHH
Confidence 35565655554 233333456689999999987653
No 147
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=21.65 E-value=87 Score=18.06 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcccc
Q psy14727 27 TTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARV 66 (67)
Q Consensus 27 t~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 66 (67)
..+|..+...|.-..+-. .-.++|..||+++..|
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV 229 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTV 229 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 468888888887764322 4568899999988765
No 148
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=21.56 E-value=27 Score=16.40 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=11.1
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..||++..-
T Consensus 13 ~~~lA~~lGVs~~a 26 (71)
T 2hin_A 13 VEKAAVGVGVTPGA 26 (71)
T ss_dssp HHHHHHHHTSCHHH
T ss_pred HHHHHHHHCCCHHH
Confidence 56899999998654
No 149
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.24 E-value=28 Score=15.14 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=10.2
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..+|++...
T Consensus 19 q~~lA~~~gis~~~ 32 (71)
T 1zug_A 19 QTELATKAGVKQQS 32 (71)
T ss_dssp HHHHHHHHTSCHHH
T ss_pred HHHHHHHhCCCHHH
Confidence 45788888887654
No 150
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=21.22 E-value=55 Score=18.36 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=22.5
Q ss_pred CCCCCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHHcCCCcc
Q psy14727 25 NRTTFTLQQLE-ELETAFAQTHYPDVFTREDLAMKINLTEA 64 (67)
Q Consensus 25 ~Rt~~s~~q~~-~Le~~F~~~~yp~~~~r~~La~~l~l~~~ 64 (67)
.|...+.+++. .-...|...-|-... -..||..+|++..
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~ 64 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSS 64 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHH
Confidence 44456666554 344457666665444 3478999998764
No 151
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.19 E-value=28 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCCcccc
Q psy14727 50 FTREDLAMKINLTEARV 66 (67)
Q Consensus 50 ~~r~~La~~l~l~~~qV 66 (67)
..-.+||..||++...|
T Consensus 31 ~sa~eLAk~LgiSk~aV 47 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREV 47 (82)
T ss_dssp EEHHHHHHHSSSCHHHH
T ss_pred CCHHHHHHHHCcCHHHH
Confidence 34568999999987544
No 152
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=20.74 E-value=30 Score=15.77 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=10.5
Q ss_pred HHHHHHHcCCCccc
Q psy14727 52 REDLAMKINLTEAR 65 (67)
Q Consensus 52 r~~La~~l~l~~~q 65 (67)
..+||..+|++...
T Consensus 14 q~~lA~~lgvs~~~ 27 (79)
T 3bd1_A 14 VSALAASLGVRQSA 27 (79)
T ss_dssp HHHHHHHHTCCHHH
T ss_pred HHHHHHHHCCCHHH
Confidence 46789999887653
No 153
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=20.15 E-value=27 Score=17.16 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.8
Q ss_pred HHHHHHHcCCCcccc
Q psy14727 52 REDLAMKINLTEARV 66 (67)
Q Consensus 52 r~~La~~l~l~~~qV 66 (67)
...+|..+|+++.+|
T Consensus 27 Q~~vAe~~GvdeStI 41 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQI 41 (83)
T ss_dssp HHHHHHHHTSCHHHH
T ss_pred hHHHHHHhCCCHHHH
Confidence 457899999988765
Done!