RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14727
(67 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 57.9 bits (140), Expect = 5e-14
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R R+ R +T Q ELE F Y R ++A +NLTE +V+
Sbjct: 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 54.4 bits (131), Expect = 1e-12
Identities = 29/45 (64%), Positives = 36/45 (80%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+RNRT+FT +Q+E LE F +THYPDVF RE LA KI+L EAR+Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 52.2 bits (125), Expect = 7e-12
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R+ R ++ QL ELE +A + R ++ +L+E ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 51.8 bits (124), Expect = 1e-11
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
K R RT +QL L T +A PD +E L L+ ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 51.4 bits (123), Expect = 1e-11
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ + F+ Q ELE F Y R+ LA + L+E +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 51.2 bits (122), Expect = 3e-11
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R +R T+ + L +E+ F + YPD RE++A N +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG 45
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 50.5 bits (121), Expect = 3e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R T+T Q ELE F Y R ++A ++LTE +++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 49.9 bits (119), Expect = 6e-11
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 21 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
KQRR+RTTF+ QL+ELE AF +T YPD++TRE+LA + NLTEAR+Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 49.5 bits (118), Expect = 8e-11
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 24 RNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R RT F+ +QL L+ F + Y R+ L+ ++ L EA+++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 49.7 bits (118), Expect = 1e-10
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
K+R+ R FT Q ELE F Q Y RE LA I LT +V+
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 49.6 bits (118), Expect = 1e-10
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
RT FT +QL ELE F Y R ++A + L E +V+
Sbjct: 24 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 47.6 bits (113), Expect = 5e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
QRR RT FT QQL++LE F + YPD+ TRE++A+ NLTEARV+
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 48.1 bits (114), Expect = 5e-10
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQ----THYPDVFTREDLAMKINLTEARVQ 67
+ S +R RT FT +Q E++ + D E + + ++
Sbjct: 9 NPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 47.2 bits (112), Expect = 6e-10
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R FT Q L F + P + ++ ++ L + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 46.8 bits (111), Expect = 9e-10
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R+ RT FT QL LE F Q Y + R + + ++LTE +V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 46.8 bits (111), Expect = 9e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 24 RNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R RT FT QL LE F + +Y R +LA ++NL E+ ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 45.6 bits (108), Expect = 2e-09
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+++ + Q LE F + + +E++A K +T +V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 46.1 bits (109), Expect = 2e-09
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
RR RTTFT Q+ ELE F Q Y DL+ K+ L A+V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 45.3 bits (107), Expect = 3e-09
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 24 RNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ RTT ++ + LE F + P +A ++NL + V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 45.3 bits (107), Expect = 5e-09
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 22 QRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+R+ R F+ Q+ ELE F Q Y RE LA I+LT +V+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 45.0 bits (106), Expect = 7e-09
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 23 RRNRTTFTLQQLEELETAFAQT-HYPDVFTREDLAMKINLTEARVQ 67
T T Q+E LE F + +PD T +A + LTE + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 43.8 bits (103), Expect = 2e-08
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 20 RKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ ++R RT+ + LET F + P + +A ++ L + V+
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 43.2 bits (102), Expect = 3e-08
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 23 RRNRTTFTLQQLEELETAFAQTH---YPDVFTREDLAMKINLTEARVQ 67
+ R + + Q YP ++ +A + NLT +V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 42.8 bits (101), Expect = 4e-08
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 24 RNRTTFTLQQLEELETAFA-QTHYPDVFTREDLAMKINLTEARVQ 67
++ ++ + LE F T YPD + L+ +++ + ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 42.4 bits (100), Expect = 4e-08
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 30 TLQQLEELETAFA-QTHYPDVFTREDLAMKINLTEARVQ 67
T Q LE F T +PD E L+ +++ +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 42.1 bits (98), Expect = 9e-08
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
R + + L A+ + P RE L + N E +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 42
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 41.5 bits (97), Expect = 1e-07
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 23 RRNRTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67
RR R F Q E L F YP +E+LA K +T ++V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 41.2 bits (96), Expect = 2e-07
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 21 KQRRNRTTFTLQQLEELETAFAQT-HYPDVFTREDLAMKINLTEARVQ 67
R+RT +L+ L L++ YPD L+ +++L + +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 39.0 bits (91), Expect = 1e-06
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 23 RRNRTTFTLQQLEELETAFAQ---THYPDVFTREDLAMKINLTEARVQ 67
R +R FT + + LE+ FA+ Y D E+L +L+ +++
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 38.4 bits (89), Expect = 2e-06
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 26 RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
RT+ LE +F + P +A ++N+ + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 32.8 bits (74), Expect = 4e-04
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ T +QL L+ +F + L + LT +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 31.6 bits (71), Expect = 0.001
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
+ T +QL L++ F Q + + L L +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
{Escherichia coli [TaxId: 562]}
Length = 439
Score = 22.4 bits (48), Expect = 6.0
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 39 TAFAQTHYPDVFTREDLAMKINLTEAR 65
+ +Y D T DLA L E R
Sbjct: 393 NDWVDRYYRDRLTAADLADPQLLREGR 419
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.131 0.372
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,070
Number of extensions: 8164
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 35
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)