BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14728
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 124/220 (56%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L NQ+T ++ L L LE LD+S N++ +I
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + ++N+VSD +++ L N
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 350
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
+L+ N I I + LT L L L++NQ+T I+ L L NL L+LS N I +I L
Sbjct: 90 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L +L++L SN+++ ++ + +L L+ L++ NK+ I L LTNLE L N+IS
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++ + L KL L +
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 269
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL----DRNPVAQ 296
N+IS I +A LT L +N+NQ+ D + ++ L+N L T+Y D +PV+
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TLYFNNISDISPVSS 325
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 232
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ S N ++ + +L + +
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNIN 352
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 353 WLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
+L L SN IS I + L L+ L N++ ++ L LT LE L + NK+S I LA
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLA 192
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
LT L L N++ I L LTNL +L L+ N L I L S L LD+A N+IS
Sbjct: 193 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 252
Query: 249 IIQNIAHLTELQEFWINDNQVSD 271
+ ++ LT+L E + NQ+S+
Sbjct: 253 NLAPLSGLTKLTELKLGANQISN 275
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L L L N++ I + +LK L L L N I I + LT L+ L+ NK
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK 338
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+S + +LA+LT +N LS N++ + L LT +TQL L++ T
Sbjct: 339 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 384
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
++D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N
Sbjct: 39 DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 95
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
++ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 262 FWINDNQVSD 271
+ NQV+D
Sbjct: 156 LSFSSNQVTD 165
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L NQ+T ++ L L LE LD+S N++ +I
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + +N+VSD +++ L N
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 350
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
+L+ N I I + LT L L L++NQ+T I+ L L NL L+LS N I +I L
Sbjct: 90 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L +L++L SN+++ ++ + +L L+ L++ NK+ I L LTNLE L N+IS
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++ + L KL L +
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 269
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL----DRNPVAQ 296
N+IS I +A LT L +N+NQ+ D + ++ L+N L T+Y D +PV+
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TLYFNNISDISPVSS 325
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 114/208 (54%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 232
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ N ++ + +L + +
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 352
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 353 WLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
+L L SN IS I + L L+ L N++ ++ L LT LE L + NK+S I LA
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLA 192
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
LT L L N++ I L LTNL +L L+ N L I L S L LD+A N+IS
Sbjct: 193 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 252
Query: 249 IIQNIAHLTELQEFWINDNQVSD 271
+ ++ LT+L E + NQ+S+
Sbjct: 253 NLAPLSGLTKLTELKLGANQISN 275
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L L L N++ I + +LK L L L N I I + LT L+ L+ NK
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 338
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+S + +LA+LT +N LS N++ + L LT +TQL L++ T
Sbjct: 339 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 384
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
++D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N
Sbjct: 39 DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 95
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
++ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 262 FWINDNQVSD 271
+ NQV+D
Sbjct: 156 LSFSSNQVTD 165
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L NQ+T ++ L L LE LD+S N++ +I
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + +N+VSD +++ L N
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 350
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
+L+ N I I + LT L L L++NQ+T I+ L L NL L+LS N I +I L
Sbjct: 90 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L +L++L SN+++ ++ + +L L+ L++ NK+ I L LTNLE L N+IS
Sbjct: 150 LTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++ + L KL L +
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 269
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL----DRNPVAQ 296
N+IS I +A LT L +N+NQ+ D + ++ L+N L T+Y D +PV+
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TLYFNNISDISPVSS 325
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 114/208 (54%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 232
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ N ++ + +L + +
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 352
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 353 WLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
+L L SN IS I + L L+ L N++ ++ L LT LE L + NK+S I LA
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLA 192
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
LT L L N++ I L LTNL +L L+ N L I L S L LD+A N+IS
Sbjct: 193 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 252
Query: 249 IIQNIAHLTELQEFWINDNQVSD 271
+ ++ LT+L E + NQ+S+
Sbjct: 253 NLAPLSGLTKLTELKLGANQISN 275
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L L L N++ I + +LK L L L N I I + LT L+ L+ NK
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 338
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+S + +LA+LT +N LS N++ + L LT +TQL L++ T
Sbjct: 339 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 384
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N+
Sbjct: 40 LDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Query: 263 WINDNQVSD 271
+ NQV+D
Sbjct: 157 NFSSNQVTD 165
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L + NQ+T ++ L L LE LD+S N++ +I
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 189
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + ++N+VSD +++ L N
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 349
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ S N ++ + +L + +
Sbjct: 292 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNIN 351
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 352 WLSAGHNQISDLTPLANLTRITQLGLND 379
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 26/253 (10%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGD---------------------NKIRIIENLDG 167
+L L SN IS I + L L+ L G+ NK+ I L
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
LTNLE L N+IS I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 252
Query: 228 IENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
+ L KL L + N+IS I +A LT L +N+NQ+ D + ++ L+N L T+
Sbjct: 253 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TL 311
Query: 288 YL----DRNPVAQ 296
Y D +PV+
Sbjct: 312 YFNNISDISPVSS 324
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 21/222 (9%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
IK I+ + L L ++ +NQLT I L L L + ++ N+I +I L +L NL L
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLG------------- 177
L +N+I+ I+ + +L L LEL N I I L GLT+L++L G
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLT 172
Query: 178 --------KNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE 229
NK+S I LA LT L L N++ I L LTNL +L L+ N L I
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 230 NLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
L S L LD+A N+IS + ++ LT+L E + NQ+S+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 274
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I+ I G+++L NL ++ +N+++ I + +L KL + + +N+I I L LTNL L
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
L N+I+ ID L +LT LN L L N + I L LT+L QL N +T ++ L +
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG-NQVTDLKPLANL 171
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
LE LD++ NK+S I +A LT L+ +NQ+SD + +L N
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 217
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 218 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L L L N++ I + +LK L L L N I I + LT L+ L+ NK
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK 337
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+S + +LA+LT +N LS N++ + L LT +TQL L++ T
Sbjct: 338 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 383
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N+
Sbjct: 40 LDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Query: 263 WINDNQVSD 271
NQV+D
Sbjct: 157 NFG-NQVTD 164
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L + NQ+T ++ L L LE LD+S N++ +I
Sbjct: 135 LNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 193
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 253
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 254 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 313
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + +N+VSD +++ L N
Sbjct: 314 TLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTN 353
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 115/208 (55%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 176 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 235
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 236 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 295
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ + N ++ + +L + +
Sbjct: 296 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNIN 355
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 356 WLSAGHNQISDLTPLANLTRITQLGLND 383
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 26/253 (10%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 77 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 136
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGD---------------------NKIRIIENLDG 167
+L L SN IS I + L L+ L G+ NK+ I L
Sbjct: 137 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 196
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
LTNLE L N+IS I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++
Sbjct: 197 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 256
Query: 228 IENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
+ L KL L + N+IS I +A LT L +N+NQ+ D + ++ L+N L T+
Sbjct: 257 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TL 315
Query: 288 YL----DRNPVAQ 296
Y D +PV+
Sbjct: 316 YFNNISDISPVSS 328
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I+ I G+++L NL ++ +N+++ I + +L KL + + +N+I I L LTNL L
Sbjct: 57 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 116
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
L N+I+ ID L +LT LN L L N + I L LT+L QL N +T ++ L +
Sbjct: 117 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANL 175
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
LE LD++ NK+S I +A LT L+ +NQ+SD + +L N
Sbjct: 176 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 221
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 93/188 (49%), Gaps = 22/188 (11%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L+ N I I + +LT L EL L NQL I L +L NL LDL+ N+I +
Sbjct: 200 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 259
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK---IRIIENL------------ 165
L L L +L L +N+IS I + L L LEL +N+ I I NL
Sbjct: 260 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 319
Query: 166 -------DGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
LT L+ L+ NK+S + +LA+LT +N LS N++ + L LT +TQL
Sbjct: 320 ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Query: 219 YLSENGLT 226
L++ T
Sbjct: 380 GLNDQAWT 387
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
++D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N
Sbjct: 43 DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 99
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
++ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 100 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 159
Query: 262 FWINDNQVSD 271
NQV+D
Sbjct: 160 LSFG-NQVTD 168
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L + NQ+T ++ L L LE LD+S N++ +I
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 194
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + +N+VSD +++ L N
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 354
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 26/253 (10%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 78 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 137
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGD---------------------NKIRIIENLDG 167
+L L SN IS I + L L+ L G+ NK+ I L
Sbjct: 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 197
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
LTNLE L N+IS I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 257
Query: 228 IENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
+ L KL L + N+IS I +A LT L +N+NQ+ D + ++ L+N L T+
Sbjct: 258 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TL 316
Query: 288 YL----DRNPVAQ 296
Y D +PV+
Sbjct: 317 YFNNISDISPVSS 329
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 114/208 (54%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 236
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ N ++ + +L + +
Sbjct: 297 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 356
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 357 WLSAGHNQISDLTPLANLTRITQLGLND 384
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I+ I G+++L NL ++ +N+++ I + +L KL + + +N+I I L LTNL L
Sbjct: 58 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 117
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
L N+I+ ID L +LT LN L L N + I L LT+L QL N +T ++ L +
Sbjct: 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANL 176
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
LE LD++ NK+S I +A LT L+ +NQ+SD + +L N
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 222
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 282
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L L L N++ I + +LK L L L N I I + LT L+ L+ NK
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+S + +LA+LT +N LS N++ + L LT +TQL L++ T
Sbjct: 343 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 388
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
++D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N
Sbjct: 44 DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
++ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 101 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 160
Query: 262 FWINDNQVSD 271
NQV+D
Sbjct: 161 LSFG-NQVTD 169
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ RL L N I I + LT+L++L + NQ+T ++ L L LE LD+S N++ +I
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 189
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NLE L +N+IS I + L L L L N+++ I L LTNL +L L N+
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS + L+ LTKL L L N++ I L LT LT L L+EN L I + + + L L
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ +N IS I ++ LT+LQ + +N+VSD +++ L N
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 349
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 114/208 (54%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
N++ I +++L L L+L N + I + +LT L +L+ N ++ + +L + +
Sbjct: 292 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 351
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWIND 266
L +N+IS + +A+LT + + +ND
Sbjct: 352 WLSAGHNQISDLTPLANLTRITQLGLND 379
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 26/253 (10%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + I + LT L ++ + +NQ+ I L L NL L L N+I +I L +L NL
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 132
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGD---------------------NKIRIIENLDG 167
+L L SN IS I + L L+ L G+ NK+ I L
Sbjct: 133 RLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
LTNLE L N+IS I L LT L+ LSL N+L+ I L +LTNLT L L+ N ++
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 252
Query: 228 IENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
+ L KL L + N+IS I +A LT L +N+NQ+ D + ++ L+N L T+
Sbjct: 253 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TL 311
Query: 288 YL----DRNPVAQ 296
Y D +PV+
Sbjct: 312 YFNNISDISPVSS 324
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I+ I G+++L NL ++ +N+++ I + +L KL + + +N+I I L LTNL L
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 112
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
L N+I+ ID L +LT LN L L N + I L LT+L QL N +T ++ L +
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG-NQVTDLKPLANL 171
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
LE LD++ NK+S I +A LT L+ +NQ+SD + +L N
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 217
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 218 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L L L N++ I + +LK L L L N I I + LT L+ L+ NK
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 337
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+S + +LA+LT +N LS N++ + L LT +TQL L++ T
Sbjct: 338 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 383
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+D + L+ LG I+ I+ ++ L NL ++ N+++ I L +LTKL + + N+
Sbjct: 40 LDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+ I L LTNLT L L N +T I+ L + L L+++ N IS I ++ LT LQ+
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Query: 263 WINDNQVSD 271
NQV+D
Sbjct: 157 NFG-NQVTD 164
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 26/256 (10%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
I +L++ + I+ I LT L+ L L NQ+T I L L+ L L + N+I +I
Sbjct: 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN---------------------- 157
L +L NL +LYL + IS I + +L K L LG N
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE 164
Query: 158 -KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLT 216
K++ + + LT+L L L N+I I LASLT L+ + N++ I + T L
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLN 224
Query: 217 QLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN 276
L + N +T + L + +L L++ N+IS I + LT+L+ + NQ+SD ++
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISD---IS 281
Query: 277 VLENNKQLQTIYLDRN 292
VL N QL +++L+ N
Sbjct: 282 VLNNLSQLNSLFLNNN 297
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
+K + I LT L L L NQ+ I L +L +L N+I +I + + L L
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSL 226
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
+ +NKI+ + + +L +L LE+G N+I I + LT L+ L +G N+IS I L +L
Sbjct: 227 KIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNL 286
Query: 191 TKLNILSLQCNRLRT--IENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
++LN L L N+L E + LTNLT L+LS+N +T I L S K ++ D A
Sbjct: 287 SQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLSKXDSADFA 341
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 187 LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNK 246
L S+TKL + ++ +I+ +E LTNL L L+ N +T I L + KL L + NK
Sbjct: 43 LESITKLVV---AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK 99
Query: 247 ISIIQNIAHLTELQEFWINDNQVSD 271
I+ I + +LT L+E ++N++ +SD
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISD 124
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 226 TTIENLLSNEKLETLD---VAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNK 282
++ ++++ E+LE++ VA K++ IQ I +LT L+ +N NQ++D ++ L N
Sbjct: 32 ASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD---ISPLSNLV 88
Query: 283 QLQTIYLDRNPV 294
+L +Y+ N +
Sbjct: 89 KLTNLYIGTNKI 100
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 106/183 (57%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
I++++ + IK ++ I L L L L +NQ+T I + L N+ L L+ N++ +IK
Sbjct: 45 SIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIK 104
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L +L NL L+L NK+ + ++ LKKLK L L N I I L L LE LYLG N
Sbjct: 105 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 164
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
KI+ I L+ LTKL+ LSL+ N++ I L LT L LYLS+N ++ + L + L+
Sbjct: 165 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 224
Query: 240 LDV 242
L++
Sbjct: 225 LEL 227
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 93/166 (56%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I+ ++G+ +L NL L L +N+I+ I + +L + L L NK+ I+ L L NL L
Sbjct: 56 IKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWL 115
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
+L +NK+ + +L L KL LSL+ N + I L L L LYL N +T I L
Sbjct: 116 FLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL 175
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
KL+TL + N+IS I +A LT+LQ +++ N +SD + L+N
Sbjct: 176 TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN 221
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L +++++ ++ I ++ + +L L L L +N+I I + L N+ +L+L NK++
Sbjct: 43 LNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTD 102
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
I LA+L L L L N+++ + +L+ L L L L NG++ I L+ +LE+L +
Sbjct: 103 IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 162
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA 295
NKI+ I ++ LT+L + DNQ+SD + L +LQ +YL +N ++
Sbjct: 163 NNKITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHIS 211
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 156 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 215
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 216 LAGLKNLDVLELFS 229
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
+ IE I L L LEL DNQ+T + L L + L+LS N ++ + + L +++ L
Sbjct: 59 VTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 118
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
L S +I+ + + L L+VL L N+I I L GLTNL+ L +G N+++ + LA+L
Sbjct: 119 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANL 178
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL--LSNEKLETL 240
+KL L N++ I L +L NL +++L +N ++ + L LSN + TL
Sbjct: 179 SKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNLFIVTL 230
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
+ L ++ +T IE + L NL L+L N+I ++ L +L + +L L N + +
Sbjct: 49 IATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA 108
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+ L+ +K L+L +I + L GL+NL+ LYL N+I+ I LA LT L LS+ N+
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQ 168
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+ N LT + NL KL TL NKIS I +A L L E
Sbjct: 169 V-------------------NDLTPLANL---SKLTTLRADDNKISDISPLASLPNLIEV 206
Query: 263 WINDNQVSDWNTVNVLEN 280
+ DNQ+SD + + L N
Sbjct: 207 HLKDNQISDVSPLANLSN 224
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
I L L N +K + I L ++K L+L Q+T + L L NL++L L N+I I
Sbjct: 93 ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 152
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NL+ L + +N+++ + + +L KL L DNKI I L L NL E++L N+
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQ 212
Query: 181 ISRIDNLASLTKLNILSL 198
IS + LA+L+ L I++L
Sbjct: 213 ISDVSPLANLSNLFIVTL 230
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%)
Query: 66 LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA 125
L+ N I + + LT + ELEL N L + + L +++ LDL+ +I ++ L L+
Sbjct: 76 LKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 135
Query: 126 NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRID 185
NL+ LYL N+I+ I + L L+ L +G+N++ + L L+ L L NKIS I
Sbjct: 136 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDIS 195
Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNL 215
LASL L + L+ N++ + L L+NL
Sbjct: 196 PLASLPNLIEVHLKDNQISDVSPLANLSNL 225
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
LD +A L + ++ IE + +L L LEL DN+I + L LT + EL L N
Sbjct: 46 LDGIATLSAF---NTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNP 102
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
+ + +A L + L L ++ + L L+NL LYL
Sbjct: 103 LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD------------------- 143
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN------PV 294
N+I+ I +A LT LQ I +NQV+D L N +L T+ D N P+
Sbjct: 144 ---LNQITNISPLAGLTNLQYLSIGNNQVNDLTP---LANLSKLTTLRADDNKISDISPL 197
Query: 295 AQDPN 299
A PN
Sbjct: 198 ASLPN 202
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
I +I L N + GK+ ++ A L + LS + TIE ++ L NL
Sbjct: 14 PINVIFPDPALANAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIG 73
Query: 218 LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNV 277
L L +N +T + L + K+ L+++ N + + IA L ++ + Q++D +
Sbjct: 74 LELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 133
Query: 278 LENNKQLQTIYLDRN 292
L N LQ +YLD N
Sbjct: 134 LSN---LQVLYLDLN 145
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
+ IE + L L LEL DNQ+T + L L + L+LS N ++ + + L +++ L
Sbjct: 53 VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
L S +I+ + + L L+VL L N+I I L GLTNL+ L +G ++S + LA+L
Sbjct: 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL 172
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL 237
+KL L N++ I L +L NL +++L N ++ + L + L
Sbjct: 173 SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNL 219
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
+ L + +T IE + L NL L+L N+I ++ L +L + +L L N + +
Sbjct: 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+ L+ +K L+L +I + L GL+NL+ LYL N+I+ I LA LT L LS+ +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+ +L L NL+ KL TL NKIS I +A L L E
Sbjct: 163 ---VSDLTPLANLS-------------------KLTTLKADDNKISDISPLASLPNLIEV 200
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
+ +NQ+SD V+ L N L + L + P +
Sbjct: 201 HLKNNQISD---VSPLANTSNLFIVTLTNQTITNQPVF 235
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
I L L N +K + I L ++K L+L Q+T + L L NL++L L N+I I
Sbjct: 87 ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NL+ L + + ++S + + +L KL L+ DNKI I L L NL E++L N+
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206
Query: 181 ISRIDNLASLTKLNILSL 198
IS + LA+ + L I++L
Sbjct: 207 ISDVSPLANTSNLFIVTL 224
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L + L ++ IE V +L L LEL DN+I + L LT + EL L N +
Sbjct: 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
+ +A L + L L ++ + L L+NL LYL
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD---------------------- 137
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN------PVAQD 297
N+I+ I +A LT LQ I + QVSD + L N +L T+ D N P+A
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNKISDISPLASL 194
Query: 298 PN 299
PN
Sbjct: 195 PN 196
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
I +I L N ++ GK+ ++ A L + LS + TIE ++ L NL
Sbjct: 8 AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIG 67
Query: 218 LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNV 277
L L +N +T + L + K+ L+++ N + + IA L ++ + Q++D +
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 278 LENNKQLQTIYLDRN 292
L N LQ +YLD N
Sbjct: 128 LSN---LQVLYLDLN 139
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L L N I I + LT L+ L + + Q++ + L L L L N+I +I
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI 159
L L NL +++L +N+IS + + + L ++ L + I
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR----- 114
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+
Sbjct: 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106
Query: 115 -----------------IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
I +I GL HL LE LYL +NKI+ I + L KL L L DN
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+I I L GLT L+ LYL KN IS + LA L L++L L
Sbjct: 167 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NK++
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I LA+L L L L N+++ + +L+ L L L
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 174
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 175 AGLTKLQNLYLSKNHIS 191
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 196 LAGLKNLDVLELFS 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR----- 114
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+
Sbjct: 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106
Query: 115 -----------------IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
I +I GL HL LE LYL +NKI+ I + L KL L L DN
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+I I L GLT L+ LYL KN IS + LA L L++L L
Sbjct: 167 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NK++
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I LA+L L L L N+++ + +L+ L L L
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 174
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 175 AGLTKLQNLYLSKNHIS 191
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 196 LAGLKNLDVLELFS 209
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 22/150 (14%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI--------------- 115
IK ++ I L + +L L N+LT I+ L L NL L L N+I
Sbjct: 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 116 -------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGL 168
+I GL HL LE LYL +NKI+ I + L KL L L DN+I I L GL
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 174
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSL 198
T L+ LYL KN IS + LA L L++L L
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 204
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NKI+
Sbjct: 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 174
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 204
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I L +L L L L N+++ + +L+ L L L
Sbjct: 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 171
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 172 AGLTKLQNLYLSKNHIS 188
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 192
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 193 LAGLKNLDVLELFS 206
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR----- 114
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+
Sbjct: 45 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 104
Query: 115 -----------------IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
I +I GL HL LE LYL +NKI+ I + L KL L L DN
Sbjct: 105 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 164
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+I I L GLT L+ LYL KN IS + LA L L++L L
Sbjct: 165 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 205
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NK++
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 175
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 176 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 205
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I LA+L L L L N+++ + +L+ L L L
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 172
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 173 AGLTKLQNLYLSKNHIS 189
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 193
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 194 LAGLKNLDVLELFS 207
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NK++
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++R I L L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARL 175
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 176 TKLQNLYLSKNHISDLRALRGLKNLDVLEL 205
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+++++
Sbjct: 45 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 104
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L L L+ L L N IS I + HL +L+ L LG+NKI I L LT L+ L L N
Sbjct: 105 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 164
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYL 220
+I RI LA LTKL L L N + + L L NL L L
Sbjct: 165 QIRRIVPLARLTKLQNLYLSKNHISDLRALRGLKNLDVLEL 205
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 22/144 (15%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLR-------------- 204
I+ ++ + L N+ +L+L NK++ I LA+L L L L N+++
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 205 -----TIENLEALTNLTQ---LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHL 256
I ++ L +L Q LYL N +T I L KL+TL + N+I I +A L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARL 175
Query: 257 TELQEFWINDNQVSDWNTVNVLEN 280
T+LQ +++ N +SD + L+N
Sbjct: 176 TKLQNLYLSKNHISDLRALRGLKN 199
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+++++ ++ L N+T+L+L+ N LT I+ L + + L L + NK+ + ++ L +L+
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA 295
+ N +SD +N L + QL+++YL N +
Sbjct: 116 SLEHNGISD---INGLVHLPQLESLYLGNNKIT 145
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI---- 115
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+I
Sbjct: 65 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 116 ------------------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
+I GL HL LE LYL +NKI+ I + L KL L L DN
Sbjct: 125 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 184
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+I I L GLT L+ LYL KN IS + LA L L++L L
Sbjct: 185 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NKI+
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 213
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 214 LAGLKNLDVLELFS 227
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+++++ ++ L N+T+L+L+ N LT I+ L + + L L + NKI + ++ L +L+
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
+ N +SD +N L + QL+++YL N +
Sbjct: 136 SLEHNGISD---INGLVHLPQLESLYLGNNKI 164
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI---- 115
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+I
Sbjct: 65 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 116 ------------------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
+I GL HL LE LYL +NKI+ I + L KL L L DN
Sbjct: 125 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 184
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+I I L GLT L+ LYL KN IS + LA L L++L L
Sbjct: 185 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NKI+
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I L +L L L L N+++ + +L+ L L L
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 192
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 193 AGLTKLQNLYLSKNHIS 209
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 213
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 214 LAGLKNLDVLELFS 227
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 22/150 (14%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI--------------- 115
IK ++ I L + +L L N+LT I+ L L NL L L N+I
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 116 -------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGL 168
+I GL HL LE LYL +NKI+ I + L KL L L DN+I I L GL
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSL 198
T L+ LYL KN IS + LA L L++L L
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NKI+
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I L +L L L L N+++ + +L+ L L L
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 192
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 193 AGLTKLQNLYLSKNHIS 209
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 213
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 214 LAGLKNLDVLELFS 227
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI---- 115
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+I
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 101
Query: 116 ------------------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
+I GL HL LE LYL +NKI+ I + L KL L L DN
Sbjct: 102 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 161
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+I I L GLT L+ LYL KN IS + LA L L++L L
Sbjct: 162 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 202
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NKI+
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 112
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 172
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 173 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 202
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I L +L L L L N+++ + +L+ L L L
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 112
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 169
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 170 AGLTKLQNLYLSKNHIS 186
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L L N I I + LT L L L DNQ++ I L L L+ L LS N I +++
Sbjct: 131 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 190
Query: 121 LDHLANLEKLYLCS 134
L L NL+ L L S
Sbjct: 191 LAGLKNLDVLELFS 204
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
I+ ++G+ +L N+ KL+L NK++ I+ + +LK L L L +NK++
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 112
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
I +++GL +L E LYLG NKI+ I L+ LTKL+ LSL+ N++ I L L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACL 172
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
T L LYLS+N ++ + L + L+ L++
Sbjct: 173 TKLQNLYLSKNHISDLRALCGLKNLDVLEL 202
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+++++
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 101
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L L L+ L L N IS I + HL +L+ L LG+NKI I L LT L+ L L N
Sbjct: 102 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 161
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYL 220
+IS I LA LTKL L L N + + L L NL L L
Sbjct: 162 QISDIVPLACLTKLQNLYLSKNHISDLRALCGLKNLDVLEL 202
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
I+ ++ + L N+ +L+L NK++ I LA+L L L L N+++ + +L+ L L L
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 112
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
L NG++ I L+ +LE+L + NKI+ I ++ LT+L + DNQ+SD + L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACL 172
Query: 279 ENNKQLQTIYLDRNPVA 295
+LQ +YL +N ++
Sbjct: 173 ---TKLQNLYLSKNHIS 186
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
I+ + + T LKEL L NQ++ + L L LE L ++ NR++ + G+ A L +L
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL 111
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
+L +N++ +++ HLK L++L + +NK++ I L L+ LE L L N+I+ L L
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRL 171
Query: 191 TKLNILSLQCNR 202
K+N + L +
Sbjct: 172 KKVNWIDLTGQK 183
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTN--LE 172
I+ + G+ NL++L+L N+IS + + L KL+ L + N+++ NL+G+ + L
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK---NLNGIPSACLS 109
Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLL 232
L+L N++ D+L L L ILS++ N+L++I L L+ L L L N +T L
Sbjct: 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169
Query: 233 SNEKLETLDVAYNK 246
+K+ +D+ K
Sbjct: 170 RLKKVNWIDLTGQK 183
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 155 GDNK-IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALT 213
GDN I+ + + TNL+EL+L N+IS + L LTKL LS+ NRL+ + + +
Sbjct: 48 GDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC 107
Query: 214 NLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
L++L+L N L ++L+ + LE L + NK+ I + L++L+ ++ N++++
Sbjct: 108 -LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN 164
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 137 ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNIL 196
I + + LK L L N+I + L LT LEEL + +N++ ++ + S L+ L
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRL 111
Query: 197 SLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHL 256
L N LR ++L L NL L + N L +I L KLE LD+ N+I+ N L
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT---NTGGL 168
Query: 257 TELQEF-WIN 265
T L++ WI+
Sbjct: 169 TRLKKVNWID 178
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 96 IENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155
+ + NL+ L LS N+I ++ L L LE+L + N++ + + L L L
Sbjct: 56 LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD 114
Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
+N++R ++L L NLE L + NK+ I L L+KL +L L N I N LT L
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE---ITNTGGLTRL 171
Query: 216 TQL 218
++
Sbjct: 172 KKV 174
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+E L + N +K + I L L L +N+L ++L L NLEIL + N+++ I
Sbjct: 87 LEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM 145
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK 158
L L+ LE L L N+I+ + LKK+ ++L K
Sbjct: 146 LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 167 GLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
GL N + LGK ++ + + L+ + + + ++++ ++ TNL +L+LS N ++
Sbjct: 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS 76
Query: 227 TIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
+ L KLE L V N++ + I L ++++N++ D +++ L+N
Sbjct: 77 DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDSLIHLKN 129
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
C+ RL L N ++ +++ L L+ L + +N+L I L L LE+LDL N I
Sbjct: 106 ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165
Query: 119 KGLDHLANLEKLYLCSNK 136
GL L + + L K
Sbjct: 166 GGLTRLKKVNWIDLTGQK 183
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 10/163 (6%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLE 172
I+ ++G+ +L N+ L L NK+ I + L L L L N+++ + N D LTNL+
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 173 ELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
EL L +N++ + + LT L L+L N+L+++ + LTNLT+L LS N L ++
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 229 ENLLSNE--KLETLDVAYNKISIIQN--IAHLTELQEFWINDN 267
+ ++ +L+ L + N++ + + LT LQ W++DN
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 64 LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
L+L N ++ + N LT LKEL L +NQL + + D L NL L+L+ N+++ +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 119 KG-LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
KG D L NL +L L N++ + D L +LK L L N+++ + + D LT+L+
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209
Query: 174 LYLGKNK 180
++L N
Sbjct: 210 IWLHDNP 216
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 31/198 (15%)
Query: 61 IERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+E L L NL++KIE + L +L LEL+DN+LT +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-------------------- 100
Query: 119 KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGD-NKIRIIEN--LDGLTNLEE 173
+ ++L+ L +L+L +N I I + + + L+ L+LG+ ++ I +GL NL
Sbjct: 101 QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 174 LYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE-N 230
L LG + I NL +L +L L L NRL I + + LT+L +L+L + TIE N
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 231 LLSNEK-LETLDVAYNKI 247
+ K LE L++++N +
Sbjct: 221 AFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 31/198 (15%)
Query: 61 IERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
+E L L NL++KIE + L +L LEL+DN+LT +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-------------------- 100
Query: 119 KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGD-NKIRIIEN--LDGLTNLEE 173
+ ++L+ L +L+L +N I I + + + L+ L+LG+ ++ I +GL NL
Sbjct: 101 QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 174 LYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE-N 230
L LG + I NL +L +L L L NRL I + + LT+L +L+L + TIE N
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 231 LLSNEK-LETLDVAYNKI 247
+ K LE L++++N +
Sbjct: 221 AFDDLKSLEELNLSHNNL 238
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 37/209 (17%)
Query: 81 TTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIR--EIKGLDHLANLEKLYLCSNK 136
T + L L++NQ+ +I+ + L +LEIL LS N IR EI + LANL L L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 137 ISKIENVD--HLKKLKVLELGDNKIRIIEN---------------------------LDG 167
++ I N +L KLK L L +N I I + +G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGL 225
L+NL L L + I NL L KL+ L L N L I + + L +L +L++ ++ +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 226 TTIE-NLLSN-EKLETLDVAYNKISIIQN 252
IE N N + L +++A+N ++++ +
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 12/93 (12%)
Query: 185 DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE----NLLSNEKLE 238
D +++ T+L L+L N+++ I+ + + L +L L LS N + TIE N L+N L
Sbjct: 60 DGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN--LN 115
Query: 239 TLDVAYNKISIIQNIA--HLTELQEFWINDNQV 269
TL++ N+++ I N A +L++L+E W+ +N +
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 9/159 (5%)
Query: 145 HLKKLKVLELGDNKIRIIENLDGLTNLE----ELYLGKNKISRID-NLASLTKLNILSLQ 199
H+ K ++ + IRI E + E EL+ I ++D L++L L+L
Sbjct: 1 HMAKATTIK---DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS 57
Query: 200 CNRLRTIENLEALTNLTQLYLSENGLTTIENLLS-NEKLETLDVAYNKISIIQNIAHLTE 258
N + I +L + NL L L N + IENL + + LE L ++YN+I+ + I L
Sbjct: 58 TNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVN 117
Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD 297
L+ ++++N++++W ++ L +L+ + L NP+ D
Sbjct: 118 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 156
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 81 TTLKELELYDNQLTVIENLD----TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK 136
T +++EL+ + IE +D TL + L LS N I +I L + NL L L N
Sbjct: 24 TEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL 82
Query: 137 ISKIENVDHLK-KLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS---RIDNLASLTK 192
I KIEN+D + L+ L + N+I + ++ L NL LY+ NKI+ ID LA+L K
Sbjct: 83 IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 142
Query: 193 LNILSLQCNRL 203
L L L N L
Sbjct: 143 LEDLLLAGNPL 153
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLIN-LEILDLSFNRIREI 118
+ L L N I+KI ++ + L+ L L N + IENLD + + LE L +S+N+I +
Sbjct: 50 ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 109
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLE 153
G++ L NL LY+ +NKI+ +D L L LE
Sbjct: 110 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 144
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 61 IERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI-----ENLDTLINL-------- 105
+E L L N I++IE + L +L LEL+DN LTVI E L L L
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 106 EILDLSFNRIREIKGLDHLANLEKL-YLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN 164
I +FNR+ + LD L L+KL Y+ + N LK L LG I+ + N
Sbjct: 161 SIPSYAFNRVPSLMRLD-LGELKKLEYISEGAFEGLFN------LKYLNLGMCNIKDMPN 213
Query: 165 LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLY 219
L L LEEL + N I L+SL KL +++ Q + + + L +L +L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELN 272
Query: 220 LSENGLTTIEN 230
L+ N L+++ +
Sbjct: 273 LAHNNLSSLPH 283
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 84 KELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE 141
+ L L +N + +I+ L +LE+L L N IR+I ++
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI--------------------EVG 117
Query: 142 NVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
+ L L LEL DN + +I + + L+ L EL+L N I I + A +++ L
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 200 CNRLRTIE-----NLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ--N 252
L+ +E E L NL L L + + NL LE L+++ N I+ +
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGS 237
Query: 253 IAHLTELQEFWINDNQVS 270
L+ L++ W+ ++QVS
Sbjct: 238 FHGLSSLKKLWVMNSQVS 255
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 157 NKIRIIENLDGLTNLE----ELYLGKNKISRID-NLASLTKLNILSLQCNRLRTIENLEA 211
+ IRI E + E EL+ I ++D L++L L+L N + I +L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSG 68
Query: 212 LTNLTQLYLSENGLTTIENLLS-NEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVS 270
+ NL L L N + IENL + + LE L ++YN+I+ + I L L+ ++++N+++
Sbjct: 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128
Query: 271 DWNTVNVLENNKQLQTIYLDRNPVAQD 297
+W ++ L +L+ + L NP+ D
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYND 155
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 137 ISKIENVDH----LKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLT- 191
I IE +D LK K L L N I I +L G+ NL L LG+N I +I+NL ++
Sbjct: 34 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT---IENLLSNEKLETLDVAYNKI 247
L L + N++ ++ +E L NL LY+S N +T I+ L + +KLE L +A N +
Sbjct: 94 TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 81 TTLKELELYDNQLTVIENLD----TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK 136
T +++EL+ + IE +D TL + L LS N I +I L + NL L L N
Sbjct: 23 TEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL 81
Query: 137 ISKIENVDHLK-KLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS---RIDNLASLTK 192
I KIEN+D + L+ L + N+I + ++ L NL LY+ NKI+ ID LA+L K
Sbjct: 82 IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141
Query: 193 LNILSLQCNRL 203
L L L N L
Sbjct: 142 LEDLLLAGNPL 152
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLIN-LEILDLSFNRIREI 118
+ L L N I+KI ++ + L+ L L N + IENLD + + LE L +S+N+I +
Sbjct: 49 ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLE 153
G++ L NL LY+ +NKI+ +D L L LE
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 129/291 (44%), Gaps = 67/291 (23%)
Query: 83 LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR--EIKGLDHLANLEKLYLCSNKIS 138
L+ELEL +N ++ +E + L NL L L NR++ + L+NL KL + NKI
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 139 KIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI--DNLASLTK 192
+ + L LK LE+GDN + I + GL +LE+L L K ++ I + L+ L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 193 LNILSLQ--------------CNRLRTIE-----NLEALT-------NLTQLYLSENGLT 226
L +L L+ RL+ +E L+ +T NLT L ++ LT
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 227 TIENLLSNE--KLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS------------ 270
+ L L L+++YN IS I+ + L LQE + Q++
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 271 ------DWNTVNVLENN-----KQLQTIYLDRNPVAQDPN----YRRKIKL 306
N + LE + L+T+ LD NP+A D +RR+ +L
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 64 LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTV--IENLDTLINLEILDLSFNRIREIK 119
L L N I K+E L LKEL L NQL + D+L L +LDL N++ +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 120 G--LDHLANLEKLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEEL 174
D L +L++L++C NK++++ ++ L L L L N+++ I + D L++L
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
Query: 175 YLGKNK 180
YL N
Sbjct: 165 YLFGNP 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR--IDNLASLTKLNILSLQCNRLRT 205
++L L DN+I +E D L NL+ELYLG N++ + SLT+L +L L N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 206 IEN--LEALTNLTQLYLSENGLT 226
+ + + L +L +L++ N LT
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT 125
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 46/228 (20%)
Query: 101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVL------ 152
TL++L+ D+S R + KGL HL L L +NKISKI + L+KL+ L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLY---ALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 153 ---------------ELGDNKIRIIEN--LDGLTNLEELYLGKNKI-------SRIDNLA 188
+ DN+IR + GL N+ + +G N + D L
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNK 246
KLN L + +L I + L +L+L N + IE +LL KL L + +N+
Sbjct: 173 ---KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 247 ISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
I +I+N ++ L L+E +++N++S L + K LQ +YL N
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTN 274
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 30/166 (18%)
Query: 105 LEILDLSFNRIREIK--GL--DHLANLEKLYLCSNKISKIENVDHLK--KLKVLELGDNK 158
+ L L++ RI E K G+ D L +L+L NKI IE D L+ KL L LG N+
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 159 IRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLT 216
IR+IEN L L L EL+L NK+SR+ A L L +L +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQV------------------ 268
Query: 217 QLYLSENGLTTIE-NLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
+YL N +T + N YN IS+ N E+Q
Sbjct: 269 -VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 77 IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-G-LDHLANLEKLYL 132
LT L L L NQL + D L L L L+ N++ + G DHL L+KLYL
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 133 CSNKISKIEN--VDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLA 188
N++ + + D L KLK L L N+++ I D LTNL+ L L N++ + + A
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 189 --SLTKLNILSL-----QCNRLRTI 206
L KL ++L C+R T+
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETL 199
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 107 ILDLSFNRIREIKGLD--HLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNK---- 158
+LDL N+I EIK D +L NL L L +NKISKI L KL+ L L N+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 159 ----------IRIIEN---------LDGLTNLEELYLGKN--KISRIDNLA--SLTKLNI 195
+R+ EN +GL + + LG N K S I+N A + KL+
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 196 LSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN- 252
+ + + TI +LT+L+L N +T ++ +L L L +++N IS + N
Sbjct: 176 IRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 253 -IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+A+ L+E +N+N++ L ++K +Q +YL N
Sbjct: 235 SLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNN 273
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 107 ILDLSFNRIREIKGLD--HLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNK---- 158
+LDL N+I EIK D +L NL L L +NKISKI L KL+ L L N+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 159 ----------IRIIEN---------LDGLTNLEELYLGKN--KISRIDNLA--SLTKLNI 195
+R+ EN +GL + + LG N K S I+N A + KL+
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 196 LSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN- 252
+ + + TI +LT+L+L N +T ++ +L L L +++N IS + N
Sbjct: 176 IRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 253 -IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+A+ L+E +N+N++ L ++K +Q +YL N
Sbjct: 235 SLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNN 273
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 77 IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-G-LDHLANLEKLYL 132
LT L L L NQL + D L L L L+ N++ + G DHL L+KLYL
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 133 CSNKISKIEN--VDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLA 188
N++ + + D L KLK L L N+++ I D LTNL+ L L N++ + + A
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 189 --SLTKLNILSLQCNRL 203
L KL ++L N+
Sbjct: 175 FDRLGKLQTITLFGNQF 191
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 10/126 (7%)
Query: 152 LELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIE 207
L+L N ++ + N D LT+L +LYLG NK+ + N LT L L+L N+L+++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 208 N--LEALTNLTQLYLSENGLTTIENLLSNE--KLETLDVAYNKISIIQN--IAHLTELQE 261
N + LT L +L L+ N L ++ + + ++ +L+ L + N++ + + LT LQ
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 262 FWINDN 267
W++DN
Sbjct: 153 IWLHDN 158
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 108 LDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE 163
LDL N ++ + D L +L +LYL NK+ + N + L L L L N+++ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 164 N--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQ 217
N D LT L+EL L N++ + + LT+L L L N+L+++ + + LT+L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 218 LYLSEN 223
++L +N
Sbjct: 153 IWLHDN 158
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 64 LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
L+L N ++ + N LT LKEL L +NQL + + D L NL L L N+++ +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 119 KG-LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
KG D L NL +L L +N++ + D L +LK L L DN+++ + + D LT+L
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Query: 174 LYL 176
++L
Sbjct: 210 IWL 212
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I++I D A K L ++ + L + + ++ I+ ++ + L N+ L
Sbjct: 9 IKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYL 68
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN 230
LG NK+ I L LT L L L N+L+++ N + LTNL +L L EN L ++ +
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L WN ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 36 LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 95
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 96 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 156 DLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L WN ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 37 LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 96
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 97 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 157 DLSSNKIQSI 166
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 31/133 (23%)
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
T+LE+L L +N+I++ID+ A LT+L +L LS+N L +
Sbjct: 298 FTDLEQLTLAQNEINKIDDNA--------------------FWGLTHLLKLNLSQNFLGS 337
Query: 228 IENLLSN--EKLETLDVAYNKISII--QNIAHLTELQEFWINDNQ---VSDWNTVNVLEN 280
I++ + +KLE LD++YN I + Q+ L L+E ++ NQ V D + +
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD----GIFDR 393
Query: 281 NKQLQTIYLDRNP 293
LQ I+L NP
Sbjct: 394 LTSLQKIWLHTNP 406
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 121 LDHLANLEKLYLCSNKISKIE-----NVDHLKKLKVLE--LGDNKIRIIENLDGLTNLEE 173
H +LE+L L N+I+KI+ + HL KL + + LG R+ ENLD LE
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD---KLEV 351
Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
L L N I + + L L L+L N+L+++ + + LT+L +++L N
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+E+L L N I KI++ LT L +L L N L I++ + L LE+LDLS+N IR
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
+ + L NL++L L +N++ + + D L L+ + L N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 99 LDTLINLEILDLSFNRIREIK-----GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKV 151
+TL +L++L+L++N+I +I GLD NL+ L L N + ++ N L K+
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLD---NLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 152 LELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209
++L N I II++ L L+ L L N ++ I + S+ + L N+L T+ +
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD---IFLSGNKLVTLPKI 399
Query: 210 EALTNLTQLYLSENGLTTIE---NLLSNEKLETLDVAYNKISII---QNIAHLTELQEFW 263
NL ++LSEN L ++ LL L+ L + N+ S Q + L++ +
Sbjct: 400 NLTANL--IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 264 INDNQVS-DWNT---VNVLENNKQLQTIYLDRN 292
+ +N + W T +V E LQ +YL+ N
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 73 KIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYL 132
+ IH + ++ ++ L N+L + ++ NL + LS NR+ + L L + L +
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL--IHLSENRLENLDILYFLLRVPHLQI 430
Query: 133 ----------CSNKISKIENVDHLKKLKVLELGDNKIRII-------ENLDGLTNLEELY 175
CS + EN L+ L LG+N +++ + +GL++L+ LY
Sbjct: 431 LILNQNRFSSCSGDQTPSEN----PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 176 LGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
L N ++ + + LT L LSL NRL + + + NL L +S N L N
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA-PNPDV 545
Query: 234 NEKLETLDVAYNKI 247
L LD+ +NK
Sbjct: 546 FVSLSVLDITHNKF 559
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
++ LEL N+L + + D L L L LS N+I+ + D L L LYL NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK----ISRIDNLA 188
+ + N D L +LK L L N+++ + + D LT+L++++L N RID L+
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 125 ANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
++ +L L SNK+ + + D L +L L L N+I+ + + D LT L LYL +NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
+ + N LT+L L+L N+L+++ + + LT+L +++L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 121 LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYL 176
DHL NL++LY SNK++ I D L +L L+L DN ++ I D L +L +YL
Sbjct: 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112
Query: 177 GKNK 180
N
Sbjct: 113 YNNP 116
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 152 LELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIE 207
L L +N+I +E D L NL++LY NK++ I LT+L L L N L++I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 208 N--LEALTNLTQLYLSEN 223
+ L +LT +YL N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L +N ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 36 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 95
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 96 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 156 DLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L +N ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 155 DLSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L +N ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 37 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 96
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 97 AFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 157 DLSSNKIQSI 166
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L +N ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 179 DLSSNKIQSI 188
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 108 LDLSFNRIREIKGLDHLA--NLEKLYLCSNKISKIENVDH--LKKLKVLELGDNKIR--I 161
LDLSFN +R + + L+ L L +I IE+ + L L L L N I+
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 162 IENLDGLTNLEELYLGKNKISRIDN-----LASLTKLNILSLQCNRLRTIENLEALTNLT 216
+ GL++L++L + ++ ++N L +L +LN+ + E LTNL
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 217 QLYLSENGLTTI 228
L LS N + +I
Sbjct: 177 HLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L +N ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 155 DLSSNKIQSI 164
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 108 LDLSFNRIREIKGLDHLA--NLEKLYLCSNKISKIENVDH--LKKLKVLELGDNKIR--I 161
LDLSFN +R + + L+ L L +I IE+ + L L L L N I+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 162 IENLDGLTNLEELYLGKNKISRIDN-----LASLTKLNILSLQCNRLRTIENLEALTNLT 216
+ GL++L++L + ++ ++N L +L +LN+ + E LTNL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 217 QLYLSENGLTTI 228
L LS N + +I
Sbjct: 153 HLDLSSNKIQSI 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66 LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
L +N ++ + + + L+ L+L ++ IE+ +L +L L L+ N I+ +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
L++L+KL ++ +EN + HLK LK L + N ++ E LTNLE L
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 175 YLGKNKISRI 184
L NKI I
Sbjct: 155 DLSSNKIQSI 164
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 108 LDLSFNRIREIKGLDHLA--NLEKLYLCSNKISKIENVDH--LKKLKVLELGDNKIR--I 161
LDLSFN +R + + L+ L L +I IE+ + L L L L N I+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 162 IENLDGLTNLEELYLGKNKISRIDN-----LASLTKLNILSLQCNRLRTIENLEALTNLT 216
+ GL++L++L + ++ ++N L +L +LN+ + E LTNL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 217 QLYLSENGLTTI 228
L LS N + +I
Sbjct: 153 HLDLSSNKIQSI 164
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 17/183 (9%)
Query: 125 ANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
A+ +KL L SNK+S + + L KL++L L DNK++ + L NLE L++ NK
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 181 ISR--IDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNE- 235
+ I L L L L N+L+++ ++LT LT L L N L ++ + ++
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 236 -KLETLDVAYNKISIIQNIAH--LTELQEFWINDNQVS--DWNTVNVLENNKQLQTIYLD 290
L+ L + N++ + A LTEL+ +++NQ+ + LE K LQ L
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ---LQ 213
Query: 291 RNP 293
NP
Sbjct: 214 ENP 216
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYL 132
LT+LKEL LY+NQL + D L L+ L L N+++ + D L L+ L L
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 30/131 (22%)
Query: 86 LELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH 145
L L LTV+ +L+ L+ + LDLS NR+R + +
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP---------------------ALAA 484
Query: 146 LKKLKVLELGDNKIRIIENLDGLTN---LEELYLGKNKI---SRIDNLASLTKLNILSLQ 199
L+ L+VL+ DN +EN+DG+ N L+EL L N++ + I L S +L +L+LQ
Sbjct: 485 LRCLEVLQASDNA---LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 200 CNRLRTIENLE 210
N L E ++
Sbjct: 542 GNSLCQEEGIQ 552
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 76 NIHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS 134
++ L + L+L N+L + L L LE+L S N + + G+ +L L++L LC+
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517
Query: 135 NKI---SKIENVDHLKKLKVLELGDNKI 159
N++ + I+ + +L +L L N +
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 30/131 (22%)
Query: 86 LELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH 145
L L LTV+ +L+ L+ + LDLS NR+R + +
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP---------------------ALAA 484
Query: 146 LKKLKVLELGDNKIRIIENLDGLTN---LEELYLGKNKI---SRIDNLASLTKLNILSLQ 199
L+ L+VL+ DN +EN+DG+ N L+EL L N++ + I L S +L +L+LQ
Sbjct: 485 LRCLEVLQASDNA---LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 200 CNRLRTIENLE 210
N L E ++
Sbjct: 542 GNSLCQEEGIQ 552
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 76 NIHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS 134
++ L + L+L N+L + L L LE+L S N + + G+ +L L++L LC+
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517
Query: 135 NKI---SKIENVDHLKKLKVLELGDNKI 159
N++ + I+ + +L +L L N +
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 114/264 (43%), Gaps = 69/264 (26%)
Query: 81 TTLKELELYDNQLTVIENLDTL----INLEILDLSFNRIREIKGLDHLA---NLEKLYLC 133
T+++ L L ++QL+ N L NL +LDLS+N + + G D A LE +L
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLE 280
Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL 193
N N+ HL +L GL N+ L L ++ + +LASL K+
Sbjct: 281 YN------NIQHL--------------FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 194 NILSLQCNRLRTIENL---------------EALTNLTQLYLSENGLTTIENL------- 231
+ S Q L+ +E+L L NL L LS N T++ L
Sbjct: 321 DDFSFQW--LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 377
Query: 232 LSNEKLETLDVAYNKISIIQNIAH--LTELQEFWINDNQVS------DWNTV-NVLE--- 279
L++ L L++ NKIS I++ A L L+ + N++ +W + N+ E
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 280 -NNKQLQTIYLDRNPVAQDPNYRR 302
NK LQ L RN A P+ +R
Sbjct: 438 SYNKYLQ---LTRNSFALVPSLQR 458
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 100 DTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELG 155
D N+ +L+L+ N++R + + L L + N ISK+E L LKVL L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 156 DNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
N++ + + TNL EL+L N I +I N + + N+++L
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 83 LKELELYDNQLTVIENLD--TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
+KEL+L N L+ I D LE+L+LS N + E L+ L+ L L L +N + ++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 141 ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL--ASLTKLNILSL 198
++ L +N I + G + +YL NKI+ + +L +++ L L
Sbjct: 96 LVG---PSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 199 QCNRLRTIENLEALTN---LTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII----Q 251
+ N + T+ E + L L L N + ++ + KL+TLD++ NK++ + Q
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211
Query: 252 NIAHLTELQEFWIN 265
+ A +T WI+
Sbjct: 212 SAAGVT-----WIS 220
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 114/264 (43%), Gaps = 69/264 (26%)
Query: 81 TTLKELELYDNQLTVIENLDTL----INLEILDLSFNRIREIKGLDHLA---NLEKLYLC 133
T+++ L L ++QL+ N L NL +LDLS+N + + G D A LE +L
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFL- 289
Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL 193
+ N+ HL +L GL N+ L L ++ + +LASL K+
Sbjct: 290 -----EYNNIQHL--------------FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 330
Query: 194 NILSLQCNRLRTIENL---------------EALTNLTQLYLSENGLTTIENL------- 231
+ S Q L+ +E+L L NL L LS N T++ L
Sbjct: 331 DDFSFQW--LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 387
Query: 232 LSNEKLETLDVAYNKISIIQNIAH--LTELQEFWINDNQVS------DWNTV-NVLE--- 279
L++ L L++ NKIS I++ A L L+ + N++ +W + N+ E
Sbjct: 388 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 447
Query: 280 -NNKQLQTIYLDRNPVAQDPNYRR 302
NK LQ L RN A P+ +R
Sbjct: 448 SYNKYLQ---LTRNSFALVPSLQR 468
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 100 DTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELG 155
D N+ +L+L+ N++R + + L L + N ISK+E L LKVL L
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 156 DNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
N++ + + TNL EL+L N I +I N + + N+++L
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 136
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 114/264 (43%), Gaps = 69/264 (26%)
Query: 81 TTLKELELYDNQLTVIENLDTL----INLEILDLSFNRIREIKGLDHLA---NLEKLYLC 133
T+++ L L ++QL+ N L NL +LDLS+N + + G D A LE +L
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLE 285
Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL 193
N N+ HL +L GL N+ L L ++ + +LASL K+
Sbjct: 286 YN------NIQHL--------------FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 325
Query: 194 NILSLQCNRLRTIENL---------------EALTNLTQLYLSENGLTTIENL------- 231
+ S Q L+ +E+L L NL L LS N T++ L
Sbjct: 326 DDFSFQW--LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 382
Query: 232 LSNEKLETLDVAYNKISIIQNIAH--LTELQEFWINDNQVS------DWNTV-NVLE--- 279
L++ L L++ NKIS I++ A L L+ + N++ +W + N+ E
Sbjct: 383 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 442
Query: 280 -NNKQLQTIYLDRNPVAQDPNYRR 302
NK LQ L RN A P+ +R
Sbjct: 443 SYNKYLQ---LTRNSFALVPSLQR 463
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 100 DTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELG 155
D N+ +L+L+ N++R + + L L + N ISK+E L LKVL L
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 156 DNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
N++ + + TNL EL+L N I +I N + + N+++L
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 131
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 86 LELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKI---- 137
LE N L I+N LINL LDL+ +I I L+ L L +N +
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 138 -SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLT--KLN 194
+ + LK L ++ G + I I L LE LYLG N IS I KL
Sbjct: 98 ETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156
Query: 195 ILSLQCNRLRTI--ENLEALTNLTQLYLSENG 224
+L Q N + + E++ +L T L L+ NG
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 29/182 (15%)
Query: 80 LTTLKELEL-YDNQLTV-IENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI 137
L+ L+ L L Y+ L++ E LE+LDL+F R++ NL L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL------- 427
Query: 138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL-----YLGKNKISRIDNLASLTK 192
K+ N+ H +L++ ++ DGL L+ L + K I + ++L +L +
Sbjct: 428 -KVLNLSH----SLLDISSEQL-----FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 193 LNILSLQCNRLRTIENLEALTNLTQLY---LSENGLTTIE-NLLSNEKLETLDVAYNKIS 248
L IL L L +I+ A T+L + LS N LT+ LS+ K L++A N IS
Sbjct: 478 LEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536
Query: 249 II 250
II
Sbjct: 537 II 538
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 102 LINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDN 157
L NL L LS N + I + + NL L L SN + ++ L+ L+VL L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 158 KIRIIEN--LDGLTNLEELYLGKNKISR-----IDNLASLTKLNILSLQCNRLRTIENLE 210
I +++ + + L++LYL +N+ISR I + L KL +L L N+L+ +
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL---- 178
Query: 211 ALTNLTQL 218
LT+L +L
Sbjct: 179 PLTDLQKL 186
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 83 LKELELYDNQLTVIENL--DTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKIS 138
L+ L+L N L ++ L LE+L L N I + + +A L+KLYL N+IS
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 139 K-----IENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
+ I++ + L KL +L+L NK++ + LT+L++L
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKL 186
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 201 NRLRTIENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQNIAHLTE 258
+RLR LTNL L LS N L I E + L LD++ N HL
Sbjct: 52 SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN---------HLHT 102
Query: 259 LQEFWINDNQVSD----WNT------VNVLENNKQLQTIYLDRNPVAQDP 298
L EF +D Q + +N N E+ QLQ +YL +N +++ P
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 161 IIENLDGLTNLEELYLGKNKISRID---NLASLTKLNILSLQCNRLRTI--ENLEALTNL 215
+ ++L T L L L N +SR+ LT L+ L L N L I E + NL
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 216 TQLYLSENGLTTIENLLSN--EKLETLDVAYNKISIIQNIAH--LTELQEFWINDNQVSD 271
L LS N L T++ L + + LE L + N I ++ A + +LQ+ +++ NQ+S
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 272 WNTVNVLENNKQLQTIYLD 290
+ + + NK + + LD
Sbjct: 151 FPVELIKDGNKLPKLMLLD 169
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 25/120 (20%)
Query: 84 KELELYDNQLTVIENLD-TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
+EL+L ++ VIENL TL + +D S N IR++ G L
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL------------------ 63
Query: 143 VDHLKKLKVLELGDNKI-RIIENLD-GLTNLEELYLGKNKISRIDNLASLTKLNILSLQC 200
++LK L + +N+I RI E LD L +L EL L N + + +L L L L+ C
Sbjct: 64 ----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 196 LSLQCNRLRTIENLEA-LTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNI- 253
L L+ ++ IENL A L + S+N + ++ +L+TL V N+I I
Sbjct: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
Query: 254 -AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIV 312
L +L E + +N + + ++ L + K L + + RNPV +YR + P +
Sbjct: 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143
Query: 313 QID 315
+D
Sbjct: 144 VLD 146
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 132 LCSNKISKIENVDH-LKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL--A 188
L KI IEN+ L + ++ DN+IR ++ L L+ L + N+I RI
Sbjct: 26 LRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQ 85
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAY 244
+L L L L N L + +L+ L +L L L + N ++N+K L V Y
Sbjct: 86 ALPDLTELILTNNSLVELGDLDPLASLKSL----TYLCILRNPVTNKKHYRLYVIY 137
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 83 LKELELYDNQLTVIENLD--TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
+KEL+L N L+ I D LE+L+LS N + E L+ L+ L L L +N + ++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 141 ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL--ASLTKLNILSL 198
++ L +N I + G + +YL NKI+ + +L +++ L L
Sbjct: 96 LVG---PSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 199 QCNRLRTIENLEALTN---LTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII----Q 251
+ N + T+ E + L L L N + ++ + KL+TLD++ NK++ + Q
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211
Query: 252 NIAHLTELQEFWIN 265
+ A +T WI+
Sbjct: 212 SAAGVT-----WIS 220
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 82 TLKELELYDNQLTVIEN--LDTLINLEILDLS---FNRIREIKGLDHLANLEKLYLCSNK 136
T + LE N L I N L+NL LDL+ N I E H L L L N
Sbjct: 31 TTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSH-HQLSTLVLTGNP 89
Query: 137 I-----SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLT 191
+ + + LK L +++ G + + I + L NLE LYLG N IS I
Sbjct: 90 LIFMAETSLNGPKSLKHLFLIQTGISNLEFIP-VHNLENLESLYLGSNHISSIKFPKDFP 148
Query: 192 K--LNILSLQCNRLRTI--ENLEALTNLTQLYLSENG 224
L +L Q N + I E++ +L L L+ NG
Sbjct: 149 ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNG 185
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 40/225 (17%)
Query: 99 LDTLINLEILDLSFNRIR-------EIKGLDHLANL-----EKLYLCSNKISKIENVDHL 146
L+ L NL+ LDLS N I ++K L HL L E L L S +
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKEC------ 396
Query: 147 KKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDN-----LASLTKLNILSLQCN 201
+L++L+L ++ I NL L + +D LA L L L+L+ N
Sbjct: 397 PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN 456
Query: 202 RLR--TIEN---LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIA 254
+ TI L+ + +L L LS GL +I+ S K+ +D+++N ++ +I
Sbjct: 457 HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT-CDSID 515
Query: 255 HLTELQEFWINDNQVSDWNTVNVLENN-----KQLQTIYLDRNPV 294
L+ L+ ++N N++N++ Q TI L NP+
Sbjct: 516 SLSHLKGIYLN----LAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ----------------- 97
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 98 ----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N+L + L L NL L L EN L TI
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ----------------- 97
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 98 ----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N+L + L L NL L L EN L TI
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKL 237
SL N+L + L L NL L L EN L TI L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKL 237
SL N+L + L L NL L L EN L TI L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 135 NKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASL 190
+IS L L LEL N++ IE +G ++++EL LG+NKI I N L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 191 TKLNILSLQCNRLRTI--ENLEALTNLTQLYLSEN 223
+L L+L N++ + + E L +LT L L+ N
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 61 IERLLLRWNLIKKIENIHMLT--TLKELELYDNQLTVI-----ENLDTLINLEILDLSFN 113
I+ L L N IK+I N L LK L LYDNQ++ + E+L++L +L + FN
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N L + L L NL L L EN L TI
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N L + L L NL L L EN L TI
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N L + L L NL L L EN L TI
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ----------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 ----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N L + L L NL L L EN L TI
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ----------------- 97
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 98 ----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
SL N L + L L NL L L EN L TI
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 67/163 (41%), Gaps = 27/163 (16%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
T L +L L +LT ++ TL L LDLS N+++ + L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---------------- 98
Query: 141 ENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
L L VL++ N++ + L GL L+ELYL N++ + L KL L
Sbjct: 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKL 237
SL N L + L L NL L L EN L TI L
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 168 LTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
T+LE+L L +N+I++ID+ A LT L L+L N+L+++ + + LT+L +++L N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 121 LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYL 176
H +LE+L L N+I+KI++ L LK L L N+++ + + D LT+L++++L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL 354
Query: 177 GKN----KISRIDNLA 188
N RID L+
Sbjct: 355 HTNPWDCSCPRIDYLS 370
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 80 LTTLKELELYDNQLTVIENLDTLINL---EILDLSFNRIREI 118
LT+L+ L L DN + I+ +N+ +LDL+FN+++ I
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 161 IIENLDGLTNLEELYLGKNKISRIDNLASLTK----LNILSLQCNRL------RTIENLE 210
+ + L L+ L L +N + +A +TK L L + N L RT E
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428
Query: 211 ALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQV 269
++ L LS N LT K++ LD+ N+I SI +++ HL LQE + NQ+
Sbjct: 429 SILVLN---LSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 270 SDWNTVNVLENNKQLQTIYLDRNP 293
V + LQ I+L NP
Sbjct: 486 KSVPD-GVFDRLTSLQYIWLHDNP 508
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 25/85 (29%)
Query: 172 EELYLGKNKIS--RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE 229
+ L L +N IS R+ +++ L++L +L L NR+R+++
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD--------------------FH 94
Query: 230 NLLSNEKLETLDVAYNKISIIQNIA 254
L N+ LE LDV++N+ +QNI+
Sbjct: 95 VFLFNQDLEYLDVSHNR---LQNIS 116
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 104 NLEILDLSFNRIREIKGLDH----LANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNK 158
+L+ L LS N +R ++ L NL L + N + ++ +K++ L L
Sbjct: 388 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 447
Query: 159 IRIIE---------------NLDG----LTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
IR+++ NLD L L+ELY+ +NK+ + + + L ++ +
Sbjct: 448 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIA 507
Query: 200 CNRLRTIEN--LEALTNLTQLYLSEN 223
N+L+++ + + LT+L +++L N
Sbjct: 508 SNQLKSVPDGIFDRLTSLQKIWLHTN 533
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
++ LL+ N +K + ++ L L+ L + +NQL + L L+I+D+ N ++++
Sbjct: 112 SLKSLLVDNNNLKALSDLPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L +LE + +N++ ++ + +L L + +N ++ + +L +LE + G N
Sbjct: 170 DLP--PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNN 225
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
+ + L +L L + N L+T+ +L +L L + +N LT + L + L
Sbjct: 226 ILEELPELQNLPFLTTIYADNNLLKTLPDLPP--SLEALNVRDNYLTDLPEL--PQSLTF 281
Query: 240 LDVAYNKISIIQNIA 254
LDV+ N S + +
Sbjct: 282 LDVSENIFSGLSELP 296
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 21/95 (22%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR--EIKGLDHLANLEKLYLCSNK 136
TT + L LY NQ+T +E D+L L L+L+ N++ + D L L L L
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL---- 95
Query: 137 ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNL 171
H+ +LK + +G + +NL LT++
Sbjct: 96 --------HINQLKSIPMG-----VFDNLKSLTHI 117
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR--IDNLASLTKLNILSLQCNRLRT 205
+VL L N+I +E D LT L L L N+++ + LTKL L+L N+L++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
I + L +LT +YL N E D+ Y K I+Q+ + + L
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPW----------DCECSDILYLKNWIVQHASIVNPLGNGG 152
Query: 264 INDNQVSDWNT 274
+++ + S NT
Sbjct: 153 VDNVKCSGTNT 163
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 29/195 (14%)
Query: 83 LKELELYDNQL-TVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISK 139
L LE NQL + + I L L+L++N+I EI +E L NK+
Sbjct: 332 LGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 140 IENVDHLKKLKVLELGDNKIRIIENLDGLT------------NLEELYLGKNKISRIDN- 186
I N+ K + V D I ++DG N+ + L N+IS+
Sbjct: 392 IPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451
Query: 187 -LASLTKLNILSLQCNRLRTI---------ENLEALTNLTQLYLSENGLTTIENLLSNEK 236
++ + L+ ++L N L I EN + LT + L N LT + +
Sbjct: 452 LFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511
Query: 237 LETL---DVAYNKIS 248
L L D++YN S
Sbjct: 512 LPYLVGIDLSYNSFS 526
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 104 NLEILDLSFNRIREIKGLDH----LANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNK 158
+L+ L LS N +R ++ L NL L + N + ++ +K++ L L
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 159 IRIIE---------------NLDG----LTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
IR+++ NLD L L+ELY+ +NK+ + + + L ++ +
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481
Query: 200 CNRLRTIEN--LEALTNLTQLYLSEN 223
N+L+++ + + LT+L +++L N
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
TT + L LYDNQ+T +E D L L LDL N++ + D L L +L L N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 137 ISKIEN--VDHLKKL 149
+ I D+LK L
Sbjct: 90 LKSIPRGAFDNLKSL 104
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 69 NLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLD 122
N I K+E LT L L+L +NQLTV+ D L L L L+ N+++ I D
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 123 HLANLEKLYL 132
+L +L ++L
Sbjct: 100 NLKSLTHIWL 109
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
TT + L LYDNQ+T +E D L L LDL N++ + D L L +L L N+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 137 ISKIEN--VDHLKKL 149
+ I D+LK L
Sbjct: 98 LKSIPRGAFDNLKSL 112
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 69 NLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLD 122
N I K+E LT L L+L +NQLTV+ D L L L L+ N+++ I D
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 123 HLANLEKLYL 132
+L +L ++L
Sbjct: 108 NLKSLTHIWL 117
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 196 LSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKIS 248
L L NR+ I N L+ NL L L+ NG+ TIE + S LE LD++YN +S
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 196 LSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKIS 248
L L NR+ I N L+ NL L L+ NG+ TIE + S LE LD++YN +S
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
L+ELY+ +NK+ + + + L L +L + N+L+++ + + LT+L +++L N
Sbjct: 453 LKELYISRNKLMTLPDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|2QE9|A Chain A, Crystal Structure Of A Putative Metal-Dependent Hydrolase
(Yiza, Bsu10800) From Bacillus Subtilis At 1.90 A
Resolution
pdb|2QE9|B Chain B, Crystal Structure Of A Putative Metal-Dependent Hydrolase
(Yiza, Bsu10800) From Bacillus Subtilis At 1.90 A
Resolution
Length = 178
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 78 HMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK 136
H LTT EL N+L +EN L TL + I+D+ ++ IR I+G + +A Y NK
Sbjct: 39 HQLTTE---ELLKNRLGGVENILYTLFH--IIDVEYSWIRAIQGKEDIAVQFADYQTLNK 93
Query: 137 ISKIENVDHLKKLKVLELGDNKIR 160
+ + N + + VL+ ++I+
Sbjct: 94 VKSLSNTFRTEIIDVLQTHSDQIK 117
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 82 TLKELELYDNQLTVIEN--LDTLINLEILDLS---FNRIREIKGLDHLANLEKLYLCSNK 136
T + LE N L I+N LINL LDL+ N + E H L + L N
Sbjct: 33 TTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSH-HQLNTIVLTGNP 91
Query: 137 I-----SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI---DNLA 188
+ + + LK L + + G + + I + L NLE L+LG N IS I +N
Sbjct: 92 LIFMAETSLTGPKFLKHLFLTQTGISNLEFIP-VHNLENLESLHLGSNHISSINLPENFP 150
Query: 189 SLTKLNILSLQCNRLRTIE-----NLEALTNLT 216
+ L +L Q N + I +LE TNL+
Sbjct: 151 T-QNLKVLDFQNNAIHYISRKDTNSLEQATNLS 182
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 174 LYLGKNKISR--IDNLASLTKLNILSLQCNRL--RTIENLEALTNLTQLYLSENGLT 226
L LG N IS D + L LNIL L N+L R + + ALT LT++ LS N L+
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIR-EIKGLDHLANLEKLYLCSNKISK-- 139
LK L + N+++ ++ +NLE LD+S N I L + L+ L + NK+S
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 140 IENVDHLKKLKVLELGDNK-IRIIENLDGLTNLEELYLGKNKIS 182
+ +LK+L + N+ + I L L +L+ L L +NK +
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFT 282
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 35/188 (18%)
Query: 96 IENLDTLINLEILDLSFNR----IREIKGLDHLANLEKLYLCSNKI---SKIENVDHLKK 148
+ +L LDLS N + + L + L+ L + SN + K+ L
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 149 LKVLELGDNKIRIIENL-----DGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL 203
L+VL+L N I + DG L+ L + NKIS +++ L L + N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 212
Query: 204 RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS--IIQNIAHLTELQE 261
T I L L+ LD++ NK+S + I+ TEL+
Sbjct: 213 S---------------------TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 262 FWINDNQV 269
I+ NQ
Sbjct: 252 LNISSNQF 259
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 174 LYLGKNKISR--IDNLASLTKLNILSLQCNRL--RTIENLEALTNLTQLYLSENGLT 226
L LG N IS D + L LNIL L N+L R + + ALT LT++ LS N L+
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIR-EIKGLDHLANLEKLYLCSNKISK-- 139
LK L + N+++ ++ +NLE LD+S N I L + L+ L + NK+S
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 236
Query: 140 IENVDHLKKLKVLELGDNK-IRIIENLDGLTNLEELYLGKNKIS 182
+ +LK+L + N+ + I L L +L+ L L +NK +
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFT 279
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 35/188 (18%)
Query: 96 IENLDTLINLEILDLSFNR----IREIKGLDHLANLEKLYLCSNKI---SKIENVDHLKK 148
+ +L LDLS N + + L + L+ L + SN + K+ L
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 149
Query: 149 LKVLELGDNKIRIIENL-----DGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL 203
L+VL+L N I + DG L+ L + NKIS +++ L L + N
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 209
Query: 204 RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS--IIQNIAHLTELQE 261
T I L L+ LD++ NK+S + I+ TEL+
Sbjct: 210 S---------------------TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 262 FWINDNQV 269
I+ NQ
Sbjct: 249 LNISSNQF 256
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 100 DTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI 137
DTL L+ L NRIR+ DH NL K+YL N I
Sbjct: 70 DTLQKLKNLP---NRIRQYSAFDHAQNLIKIYLKGNAI 104
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 113 NRIREIKGLDHLANLEKLYLCSNKI 137
NRIR+ DH NL K+YL N I
Sbjct: 80 NRIRQYSAFDHAQNLIKIYLKGNAI 104
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 209 LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
LE +T + ++ G E L++E+ + LD + + IAHLT ++EFW
Sbjct: 28 LEHVTGRGRTFILAFG----ETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFW 78
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 209 LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
LE +T + ++ G E L++E+ + LD + + IAHLT ++EFW
Sbjct: 28 LEHVTGRGRTFILAFG----ETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFW 78
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 61 IERLLLRWNLIKKIENIHM--LTTLKELELYDNQLTVIEN--LDTLINLEILDL 110
++ L+LR N I + N L++++ L LYDNQ+T + DTL +L L+L
Sbjct: 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 82 TLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKI 137
T+ E+ L N + VI L +DLS N+I E+ L +L L L NKI
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNI 195
+++ K L +GL +L+ L L NKI+ R+D L LN+
Sbjct: 93 TELP-----KSL---------------FEGLFSLQLLLLNANKINXLRVDAFQDLHNLNL 132
Query: 196 LSLQCNRLRTIE--NLEALTNLTQLYLSENGL 225
LSL N+L+TI L + ++L++N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 82 TLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKI 137
T+ E+ L N + VI L +DLS N+I E+ L +L L L NKI
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNI 195
+++ K L +GL +L+ L L NKI+ R+D L LN+
Sbjct: 93 TELP-----KSL---------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 196 LSLQCNRLRTIE--NLEALTNLTQLYLSENGL 225
LSL N+L+TI L + ++L++N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 48/186 (25%)
Query: 132 LCSNKISKI---------------ENVDHLKKLKVLELGDNKI----RIIENLDGLTNLE 172
LC +KIS EN HL +L+ L L N++ +I E + +L+
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT-TIENL 231
+L + +N +S + C+ ++ L L +S N LT TI
Sbjct: 378 QLDISQNSVSYDEKKG----------DCSWTKS---------LLSLNMSSNILTDTIFRC 418
Query: 232 LSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTI 287
L +++ LD+ NKI SI + + L LQE + NQ V D + + LQ I
Sbjct: 419 LP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD----GIFDRLTSLQKI 473
Query: 288 YLDRNP 293
+L NP
Sbjct: 474 WLHTNP 479
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 97 ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVL 152
++LD L L+ + R+ I L + NL L L +N I ++ + D L+ L+ +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI 175
Query: 153 ELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKL----NILSLQCN 201
E G NK+R + + L++L L N++ + D L SL K+ N C
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Query: 202 RL 203
R+
Sbjct: 236 RI 237
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 38/240 (15%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLAN--LEKLYLCSNKIS 138
T L EL+ + N+ ++ L LD SFN+I E LD N L +L +N I+
Sbjct: 148 TQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT 204
Query: 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILS- 197
K++ ++ +L L+ NK+ I+ + LT L N ++ +D +++L+KL L
Sbjct: 205 KLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHC 261
Query: 198 ------------------LQCNRLRTIENLEALTNLTQLYL---SENGLTTIENLLSNEK 236
Q R I+ L+ N TQLYL G+T ++ L N K
Sbjct: 262 IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN-TQLYLLDCQAAGITELD-LSQNPK 319
Query: 237 LETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN---VLENN--KQLQTIYLDR 291
L L + +++ + +++H T+L+ + + D+++V L NN + QTI + +
Sbjct: 320 LVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPK 378
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 23/228 (10%)
Query: 74 IENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133
I H L + + L + +E++ + L + ++++ LD L L+ L L
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLT 336
Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRID---NLASL 190
NK S L L L+L N + + G + +L G N + +D N A +
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNAL----SFSGCCSYSDL--GTNSLRHLDLSFNGAII 390
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAY--NKIS 248
N + LE L +L + + +T LS EKL LD++Y KI
Sbjct: 391 MSANFM-----------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439
Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ 296
LT L + N D NV N L + L + + Q
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 23/228 (10%)
Query: 74 IENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133
I H L + + L + +E++ + L + ++++ LD L L+ L L
Sbjct: 273 IVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLT 331
Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRID---NLASL 190
NK S L L L+L N + + G + +L G N + +D N A +
Sbjct: 332 MNKGSISFKKVALPSLSYLDLSRNAL----SFSGCCSYSDL--GTNSLRHLDLSFNGAII 385
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAY--NKIS 248
N + LE L +L + + +T LS EKL LD++Y KI
Sbjct: 386 MSANFM-----------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 434
Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ 296
LT L + N D NV N L + L + + Q
Sbjct: 435 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 482
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 155 GDNKIRII---ENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-E 210
GD II +DG+T LE+ +SR + T++ I +L ++ T +L E
Sbjct: 228 GDQASMIIILPNQVDGITALEQKLKDPKALSRAEERLYNTEVEI-TLPKFKIETTTDLKE 286
Query: 211 ALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI 249
L+N+ L G +ENLL ++ T+D A K I
Sbjct: 287 VLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQKAFI 325
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 69 NLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLD 122
N I K+E LT L L+L +NQLTV+ D L L L L+ N+++ I D
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 123 HLANLEKLYL 132
+L +L ++L
Sbjct: 100 NLRSLTHIWL 109
>pdb|2NPI|A Chain A, Clp1-Atp-Pcf11 Complex
pdb|2NPI|B Chain B, Clp1-Atp-Pcf11 Complex
Length = 460
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 130 LYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELY 175
L LCS E V KK ELG+N I I LDG++ ++++Y
Sbjct: 293 LVLCSETDPLWEKV---KKTFGPELGNNNIFFIPKLDGVSAVDDVY 335
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 73 KIENIHM-LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA----NL 127
KIE + L+ L L + L + NL L L+ L+LS NRI GLD LA NL
Sbjct: 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI--FGGLDMLAEKLPNL 97
Query: 128 EKLYLCSNKISKIENVDHLKKLKVLE 153
L L NK+ I ++ LKKL+ L+
Sbjct: 98 THLNLSGNKLKDISTLEPLKKLECLK 123
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 221 SENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
SE T+E L++ K+ ++ A I + ++TE+ E+ D VSDW V ++E
Sbjct: 152 SEKRGATLEILVT--KMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEG 209
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 214 NLTQLYLSENGLTTIENLLSNEKLETL-DVAYNKISII--QNIAHLTEL 259
++T+LYL N T + LSN K TL D++ N+IS + Q+ +++T+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,147,184
Number of Sequences: 62578
Number of extensions: 294133
Number of successful extensions: 1619
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 378
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)